README.md
setup.py
epitopepredict/__init__.py
epitopepredict/analysis.py
epitopepredict/app.py
epitopepredict/base.py
epitopepredict/cluster.py
epitopepredict/config.py
epitopepredict/description.txt
epitopepredict/flask_serve.py
epitopepredict/neo.py
epitopepredict/peptutils.py
epitopepredict/plotting.py
epitopepredict/pymolutils.py
epitopepredict/seqdepot.py
epitopepredict/seqdepot_py3.py
epitopepredict/sequtils.py
epitopepredict/tepitope.py
epitopepredict/tests.py
epitopepredict/tornado_serve.py
epitopepredict/utilities.py
epitopepredict/web.py
epitopepredict.egg-info/PKG-INFO
epitopepredict.egg-info/SOURCES.txt
epitopepredict.egg-info/dependency_links.txt
epitopepredict.egg-info/entry_points.txt
epitopepredict.egg-info/requires.txt
epitopepredict.egg-info/top_level.txt
epitopepredict/mhcdata/blosum50.csv
epitopepredict/mhcdata/blosum62.csv
epitopepredict/mhcdata/iedb_mhc1_alleles.csv
epitopepredict/mhcdata/pmbec.csv
epitopepredict/mhcdata/quantiles_iedbmhc1.csv
epitopepredict/mhcdata/quantiles_mhcflurry.csv
epitopepredict/mhcdata/quantiles_netmhciipan.csv
epitopepredict/mhcdata/quantiles_tepitope.csv
epitopepredict/mhcnuggets/mhcnuggets_lstm/H-2-DB.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/H-2-KB.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/H-2-KD.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A0101.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A0201.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A0202.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A0203.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A0206.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A0301.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A1101.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A2301.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A2402.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A2501.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A2601.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A2602.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A2603.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A2902.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A3001.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A3002.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A3101.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A3201.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A3301.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A6801.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A6802.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A6901.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-A8001.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B0702.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B0801.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B0802.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B0803.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B1501.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B1503.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B1509.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B1517.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B1801.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B2705.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B3501.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B3901.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B4001.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B4002.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B4402.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B4403.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B4501.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B4601.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B5101.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B5301.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B5401.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B5701.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/HLA-B5801.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/Mamu-A01.h5
epitopepredict/mhcnuggets/mhcnuggets_lstm/Mamu-A02.h5
epitopepredict/presets/bovine_like_mhc2.csv
epitopepredict/presets/broad_coverage_mhc1.csv
epitopepredict/presets/human_common_mhc2.csv
epitopepredict/presets/mhc1_supertypes.csv
epitopepredict/presets/mhc2_supertypes.csv
epitopepredict/presets/us_african_mhc1.csv
epitopepredict/presets/us_caucasion_mhc1.csv
epitopepredict/static/OpenSans-Regular.ttf
epitopepredict/static/custom.css
epitopepredict/static/favicon.ico
epitopepredict/static/logo.png
epitopepredict/static/pattern1.png
epitopepredict/static/sorttable.js
epitopepredict/templates/base.html
epitopepredict/templates/global.html
epitopepredict/templates/index.html
epitopepredict/templates/makeconfig.html
epitopepredict/templates/neoepitope.html
epitopepredict/templates/sequence.html
epitopepredict/tepitope/alleles.txt
epitopepredict/tepitope/bola_hla.drb.txt
epitopepredict/tepitope/tepitope_pockets.txt
epitopepredict/tepitope/pssm/HLA-DRB1*0101.csv
epitopepredict/tepitope/pssm/HLA-DRB1*0301.csv
epitopepredict/tepitope/pssm/HLA-DRB1*0401.csv
epitopepredict/tepitope/pssm/HLA-DRB1*0402.csv
epitopepredict/tepitope/pssm/HLA-DRB1*0404.csv
epitopepredict/tepitope/pssm/HLA-DRB1*0701.csv
epitopepredict/tepitope/pssm/HLA-DRB1*0801.csv
epitopepredict/tepitope/pssm/HLA-DRB1*1101.csv
epitopepredict/tepitope/pssm/HLA-DRB1*1302.csv
epitopepredict/tepitope/pssm/HLA-DRB1*1501.csv
epitopepredict/tepitope/pssm/HLA-DRB5*0101.csv
epitopepredict/tepitope/pssm/pssm.txt
epitopepredict/testing/HIV-1.fa
epitopepredict/testing/input.vcf
epitopepredict/testing/zaire-ebolavirus.faa
epitopepredict/testing/zaire-ebolavirus.gb