Metadata-Version: 2.1
Name: celltraj_copperma
Version: 0.1.0
Summary: Toolset for single-cell trajectory modeling.
Author-email: Jeremy Copperman <copperma@ohsu.edu>
Project-URL: Homepage, https://github.com/jcopperm/celltraj
Project-URL: Issues, https://github.com/jcopperm/celltraj/issues
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.5
Description-Content-Type: text/markdown
License-File: LICENSE
License-File: AUTHORS.rst
Requires-Dist: numpy
Requires-Dist: h5py
Requires-Dist: matplotlib
Requires-Dist: pyemma
Requires-Dist: scipy
Requires-Dist: scikit-image
Requires-Dist: scikit-learn
Requires-Dist: pystackreg
Provides-Extra: dependencies
Requires-Dist: mahotas ; extra == 'dependencies'
Requires-Dist: umap-learn ; extra == 'dependencies'
Requires-Dist: pytorch ; extra == 'dependencies'
Requires-Dist: pandas ; extra == 'dependencies'
Requires-Dist: dask ; extra == 'dependencies'
Requires-Dist: msmtools ; extra == 'dependencies'
Requires-Dist: csaps ; extra == 'dependencies'
Requires-Dist: pygpcca ; extra == 'dependencies'
Requires-Dist: btrack ; extra == 'dependencies'
Requires-Dist: adjustText ; extra == 'dependencies'
Requires-Dist: cmapfile ; extra == 'dependencies'

celltraj
========

[![image](https://img.shields.io/pypi/v/celltraj.svg)](https://pypi.python.org/pypi/celltraj)

[![image](https://img.shields.io/travis/jcopperm/celltraj.svg)](https://travis-ci.com/jcopperm/celltraj)

[![Documentation Status](https://readthedocs.org/projects/celltraj/badge/?version=latest)](https://celltraj.readthedocs.io/en/latest/?version=latest)

A toolset for single-cell trajectory modeling.

-   Free software: MIT license
-   Documentation: <https://jcopperm.github.io/celltraj>.
-   Morphodynamical Trajectory Embedding tutorial:
    <https://github.com/jcopperm/celltraj/blob/main/tutorials/trajectory_embedding.ipynb>

Features
--------

-   TODO

Credits
-------

This package was created with
[Cookiecutter](https://github.com/audreyr/cookiecutter) and the
[audreyr/cookiecutter-pypackage](https://github.com/audreyr/cookiecutter-pypackage)
project template.
