LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
setup.cfg
setup.py
test-requirements.txt
tox.ini
src/__init__.py
src/deps.txt
src/cromshell/__init__.py
src/cromshell/__main__.py
src/cromshell/log.py
src/cromshell.egg-info/PKG-INFO
src/cromshell.egg-info/SOURCES.txt
src/cromshell.egg-info/dependency_links.txt
src/cromshell.egg-info/entry_points.txt
src/cromshell.egg-info/requires.txt
src/cromshell.egg-info/top_level.txt
src/cromshell/abort/__init__.py
src/cromshell/abort/command.py
src/cromshell/alias/__init__.py
src/cromshell/alias/command.py
src/cromshell/cost/__init__.py
src/cromshell/cost/command.py
src/cromshell/counts/__init__.py
src/cromshell/counts/command.py
src/cromshell/list/__init__.py
src/cromshell/list/command.py
src/cromshell/list_outputs/__init__.py
src/cromshell/list_outputs/command.py
src/cromshell/logs/__init__.py
src/cromshell/logs/command.py
src/cromshell/metadata/__init__.py
src/cromshell/metadata/command.py
src/cromshell/slim_metadata/__init__.py
src/cromshell/slim_metadata/command.py
src/cromshell/status/__init__.py
src/cromshell/status/command.py
src/cromshell/submit/__init__.py
src/cromshell/submit/command.py
src/cromshell/timing/__init__.py
src/cromshell/timing/command.py
src/cromshell/update_server/__init__.py
src/cromshell/update_server/command.py
src/cromshell/utilities/__init__.py
src/cromshell/utilities/command_setup_utils.py
src/cromshell/utilities/config_options_file_utils.py
src/cromshell/utilities/cromshellconfig.py
src/cromshell/utilities/http_utils.py
src/cromshell/utilities/io_utils.py
src/cromshell/utilities/submissions_file_utils.py
src/cromshell/utilities/workflow_id_utils.py
src/cromshell/utilities/workflow_status_utils.py
src/cromshell_draft_release.egg-info/PKG-INFO
src/cromshell_draft_release.egg-info/SOURCES.txt
src/cromshell_draft_release.egg-info/dependency_links.txt
src/cromshell_draft_release.egg-info/entry_points.txt
src/cromshell_draft_release.egg-info/requires.txt
src/cromshell_draft_release.egg-info/top_level.txt
tests/__init__.py
tests/conftest.py
tests/acceptance/__init__.py
tests/acceptance/test_placeholder.py
tests/integration/__init__.py
tests/integration/conftest.py
tests/integration/test_abort.py
tests/integration/test_alias.py
tests/integration/test_counts.py
tests/integration/test_list_outputs.py
tests/integration/test_logs.py
tests/integration/test_submit.py
tests/integration/test_update_server.py
tests/integration/utility_test_functions.py
tests/integration/mock_data/all.workflow.database.tsv
tests/metadata/GetZmwCounts.metadata.json
tests/metadata/MASseqStarcodeCbcParameterSweep.metadata.json
tests/metadata/succeeded_helloworld.metadata.json
tests/resources/README.md
tests/resources/cromwell_application.conf
tests/unit/__init__.py
tests/unit/conftest.py
tests/unit/test_alias.py
tests/unit/test_config_options_file_utils.py
tests/unit/test_cost.py
tests/unit/test_counts.py
tests/unit/test_cromshellconfig.py
tests/unit/test_http_utils.py
tests/unit/test_io_utils.py
tests/unit/test_list_outputs.py
tests/unit/test_logs.py
tests/unit/test_metadata.py
tests/unit/test_slim_metadata.py
tests/unit/test_status.py
tests/unit/test_submissions_file_utils.py
tests/unit/test_submit.py
tests/unit/test_workflow_id_utils.py
tests/unit/mock_data/all.workflow.database.tsv
tests/unit/mock_data/cromshell_config.json
tests/unit/mock_data/doom_workflow_slim_metadata.json
tests/unit/mock_data/failed_helloworld_metadata.json
tests/unit/mock_data/failed_workflow_slim_metadata.json
tests/unit/mock_data/running_helloworld_metadata.json
tests/unit/mock_data/running_workflow_slim_metadata.json
tests/unit/mock_data/submitted_helloworld_metadata.json
tests/unit/mock_data/succeeded_helloworld_metadata.json
tests/unit/mock_data/succeeded_workflow_slim_metadata.json
tests/unit/mock_data/.ipynb_checkpoints/Untitled-checkpoint.ipynb
tests/unit/mock_data/config_options_file_utils/invalid.json
tests/unit/mock_data/config_options_file_utils/valid.json
tests/unit/mock_data/counts/test_workflow_status_failed_helloword_metadata.txt
tests/unit/mock_data/counts/test_workflow_status_succeded_workflow_slim_metadata.txt
tests/unit/mock_data/list_outputs/cromwell_output_api_example.json
tests/unit/mock_data/list_outputs/helloworld_dict_of_outputs.json
tests/unit/mock_data/list_outputs/helloworld_task_level_outputs.txt
tests/unit/mock_data/list_outputs/helloworld_workflow_level_outputs.txt
tests/unit/mock_data/list_outputs/print_file_like_value_in_dict_example.txt
tests/unit/mock_data/list_outputs/print_file_like_value_in_dict_no_indent_example.txt
tests/unit/mock_data/list_outputs/succeeded_helloworld.outputs.metadata.json
tests/unit/mock_data/logs/PAPIV2_helloworld_metadata.json
tests/unit/mock_data/logs/fail_Mutect2.json
tests/unit/mock_data/logs/failed_workflow_no_calls.json
tests/unit/mock_data/logs/local_helloworld_metadata.json
tests/unit/mock_data/logs/success.json
tests/unit/mock_data/logs/will_fail.json
tests/unit/mock_data/submit/submission_file_template.text
tests/workflows/fail-mutect2.inputs.json
tests/workflows/fail-mutect2.wdl
tests/workflows/gpu_cuda_test.json
tests/workflows/gpu_cuda_test.wdl
tests/workflows/helloWorld.json
tests/workflows/helloWorld.wdl
tests/workflows/helloWorldFail.wdl
tests/workflows/mutect2.inputs.json
tests/workflows/mutect2.wdl
tests/workflows/not_valid.json
tests/workflows/not_valid.wdl
tests/workflows/will_fail.json
tests/workflows/will_fail.wdl
tests/workflows/azure/helloWorld_azure.wdl