CHANGELOG.md
CLAUDE.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
design/README.md
design/medh5-1.0-implementation-plan.md
design/medh5-1.0-proposal.md
docs/index.md
docs/examples/bench_encodings.py
docs/examples/bench_io.py
docs/examples/bench_query.py
docs/examples/index.md
docs/examples/reference_writer.py
docs/explanation/data-model.md
docs/explanation/index.md
docs/explanation/refusals.md
docs/guides/classification.md
docs/guides/cohorts.md
docs/guides/deidentify.md
docs/guides/detection.md
docs/guides/export.md
docs/guides/import-dicom.md
docs/guides/import-nifti.md
docs/guides/index.md
docs/guides/longitudinal.md
docs/guides/migrate-0x.md
docs/guides/partial-labels.md
docs/guides/performance.md
docs/guides/registration.md
docs/guides/segmentation.md
docs/guides/validate.md
docs/reference/annotations.md
docs/reference/cli.md
docs/reference/cohort-checks.md
docs/reference/converters.md
docs/reference/curation.md
docs/reference/diagnostic-codes.md
docs/reference/index.md
docs/reference/profiles-and-levels.md
docs/reference/python-api.md
docs/reference/schema.md
docs/reference/storage.md
docs/reference/torch.md
docs/spec/conformance.md
docs/spec/medh5-1.0.md
docs/tutorials/first-sample.md
docs/tutorials/first-training-run.md
docs/tutorials/index.md
medh5/__about__.py
medh5/__init__.py
medh5/_hdf5.py
medh5/bench.py
medh5/collection.py
medh5/document.py
medh5/errors.py
medh5/image.py
medh5/monai.py
medh5/py.typed
medh5/sample.py
medh5/sampling.py
medh5.egg-info/PKG-INFO
medh5.egg-info/SOURCES.txt
medh5.egg-info/dependency_links.txt
medh5.egg-info/entry_points.txt
medh5.egg-info/requires.txt
medh5.egg-info/top_level.txt
medh5/annotations/__init__.py
medh5/annotations/base.py
medh5/annotations/classification.py
medh5/annotations/geometric.py
medh5/annotations/payload.py
medh5/annotations/voxel/__init__.py
medh5/annotations/voxel/bitmask.py
medh5/annotations/voxel/instances.py
medh5/annotations/voxel/labelmap.py
medh5/annotations/voxel/layers.py
medh5/annotations/voxel/mask.py
medh5/annotations/voxel/payload.py
medh5/annotations/voxel/probmap.py
medh5/annotations/voxel/select.py
medh5/annotations/voxel/transcode.py
medh5/cli/__init__.py
medh5/cli/__main__.py
medh5/cli/_common.py
medh5/cli/conformance.py
medh5/cli/convert.py
medh5/cli/curation.py
medh5/cli/dataset.py
medh5/cli/inspect.py
medh5/cli/labels.py
medh5/cli/perf.py
medh5/cli/seg.py
medh5/conformance/__init__.py
medh5/conformance/corpus.py
medh5/conformance/suite.py
medh5/curation/__init__.py
medh5/curation/agreement.py
medh5/curation/identity.py
medh5/curation/provenance.py
medh5/curation/quality.py
medh5/curation/scrub.py
medh5/curation/splits.py
medh5/curation/timeline.py
medh5/curation/tracking.py
medh5/dataset/__init__.py
medh5/dataset/check.py
medh5/dataset/manifest.py
medh5/dataset/split.py
medh5/dataset/stats.py
medh5/geometry/__init__.py
medh5/geometry/affine.py
medh5/geometry/grid.py
medh5/geometry/multiscale.py
medh5/integrity/__init__.py
medh5/integrity/digest.py
medh5/integrity/repair.py
medh5/integrity/verify.py
medh5/io/__init__.py
medh5/io/_legacy_reader.py
medh5/io/dicom.py
medh5/io/dicom_seg.py
medh5/io/grouping.py
medh5/io/legacy.py
medh5/io/nifti.py
medh5/io/nnunetv2.py
medh5/io/report.py
medh5/io/rtstruct.py
medh5/labels/__init__.py
medh5/labels/labelset.py
medh5/labels/registry.py
medh5/labels/vocabularies/amos22-organs.json
medh5/labels/vocabularies/binary-foreground.json
medh5/labels/vocabularies/brats-subregions.json
medh5/schemas/medh5-sample-1.0.schema.json
medh5/storage/__init__.py
medh5/storage/chunking.py
medh5/storage/codecs.py
medh5/storage/index.py
medh5/storage/recompress.py
medh5/torch/__init__.py
medh5/torch/_compat.py
medh5/torch/collate.py
medh5/torch/datasets.py
medh5/torch/handles.py
medh5/transforms/__init__.py
medh5/transforms/affine.py
medh5/transforms/apply.py
medh5/transforms/base.py
medh5/transforms/bspline.py
medh5/transforms/composite.py
medh5/transforms/displacement.py
medh5/transforms/resolve.py
medh5/validate/__init__.py
medh5/validate/report.py
medh5/validate/rules.py
schemas/medh5-sample-1.0.schema.json
tests/__init__.py
tests/v1/__init__.py
tests/v1/conftest.py
tests/v1/test_classification.py
tests/v1/test_cli.py
tests/v1/test_collection.py
tests/v1/test_conformance.py
tests/v1/test_curation.py
tests/v1/test_dataset.py
tests/v1/test_docs_examples.py
tests/v1/test_encodings.py
tests/v1/test_geometric.py
tests/v1/test_geometry.py
tests/v1/test_index.py
tests/v1/test_integrity.py
tests/v1/test_io.py
tests/v1/test_labels.py
tests/v1/test_loaders.py
tests/v1/test_packaging.py
tests/v1/test_properties.py
tests/v1/test_readers.py
tests/v1/test_regressions_1_2_1.py
tests/v1/test_repair.py
tests/v1/test_sample.py
tests/v1/test_sampling.py
tests/v1/test_tracking.py
tests/v1/test_transforms.py
tests/v1/test_validate.py