LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
pyprego/__init__.py
pyprego/_fast_encode.py
pyprego/_pyprego.pyi
pyprego/compute.py
pyprego/export.py
pyprego/genomic.py
pyprego/kmers.py
pyprego/motif_db.py
pyprego/pssm.py
pyprego/py.typed
pyprego/regression.py
pyprego/types.py
pyprego/utils.py
pyprego/visualization.py
pyprego.egg-info/PKG-INFO
pyprego.egg-info/SOURCES.txt
pyprego.egg-info/dependency_links.txt
pyprego.egg-info/not-zip-safe
pyprego.egg-info/requires.txt
pyprego.egg-info/top_level.txt
pyprego/data/HOCOMOCO_motifs.csv.gz
pyprego/data/HOMER_motifs.csv.gz
pyprego/data/JASPAR_motifs.csv.gz
pyprego/data/JOLMA_motifs.csv.gz
pyprego/data/all_motif_datasets.csv.gz
src/_pyprego.h
src/_pyprego_init.cpp
src/dinuc_ops.cpp
src/dna_utils.h
src/energy_ops.cpp
src/kmer_ops.cpp
src/log_sum_exp.h
src/score_ops.cpp
tests/test_compute.py
tests/test_edge_cases.py
tests/test_genomic.py
tests/test_high_level.py
tests/test_integration.py
tests/test_kmers.py
tests/test_motif_db.py
tests/test_ported_dinucs.py
tests/test_ported_kmers.py
tests/test_ported_motifdb.py
tests/test_ported_rc.py
tests/test_ported_screening.py
tests/test_properties.py
tests/test_pssm.py
tests/test_regression.py
tests/test_utils.py
tests/test_visualization.py