create_mmseqs_pfam_profile_db :: START
    PFamA type:	seed
    KMER:	5
    Sensitivity:	7.0
    Output directory: /home/salvocos/Desktop/mmseqs-pfam-db-creation/profile-dbs/pfam-mmseqs-profiles
    Threads:	7
    Remove Tmp files:	True
    Compress output:	False
    Index DB:	False
    Write log:	True

MMseqs2 databases CMD:
/home/salvocos/work_repos/sonicparanoid2/sonicparanoid/bin/mmseqs databases Pfam-A.seed /home/salvocos/Desktop/mmseqs-pfam-db-creation/profile-dbs/pfam-mmseqs-profiles/pfama.mmseqs /home/salvocos/Desktop/mmseqs-pfam-db-creation/profile-dbs/pfam-mmseqs-profiles/tmp_pfama.seed.k5s70 --threads 7 -v 3 --remove-tmp-files
STDOUT:
databases Pfam-A.seed /home/salvocos/Desktop/mmseqs-pfam-db-creation/profile-dbs/pfam-mmseqs-profiles/pfama.mmseqs /home/salvocos/Desktop/mmseqs-pfam-db-creation/profile-dbs/pfam-mmseqs-profiles/tmp_pfama.seed.k5s70 --threads 7 -v 3 --remove-tmp-files 

MMseqs Version:              	45111b641859ed0ddd875b94d6fd1aef1a675b7e
Force restart with latest tmp	false
Remove temporary files       	true
Compressed                   	0
Threads                      	7
Verbosity                    	3

convertmsa /home/salvocos/Desktop/mmseqs-pfam-db-creation/profile-dbs/pfam-mmseqs-profiles/tmp_pfama.seed.k5s70/17479552389784082276/db.msa.gz /home/salvocos/Desktop/mmseqs-pfam-db-creation/profile-dbs/pfam-mmseqs-profiles/tmp_pfama.seed.k5s70/17479552389784082276/msa -v 3 

[=Time for merging to msa: 0h 0m 0s 1ms
Time for processing: 0h 0m 3s 376ms
msa2profile /home/salvocos/Desktop/mmseqs-pfam-db-creation/profile-dbs/pfam-mmseqs-profiles/tmp_pfama.seed.k5s70/17479552389784082276/msa /home/salvocos/Desktop/mmseqs-pfam-db-creation/profile-dbs/pfam-mmseqs-profiles/pfama.mmseqs --match-mode 1 --match-ratio 0.5 --threads 7 -v 3 

Finding maximum sequence length and set size.
[=================================================================] 19.63K 6s 266ms
Time for merging to pfama.mmseqs_h: 0h 0m 0s 3ms
Time for merging to pfama.mmseqs: 0h 0m 0s 49ms
Time for processing: 0h 0m 6s 492ms
rmdb /home/salvocos/Desktop/mmseqs-pfam-db-creation/profile-dbs/pfam-mmseqs-profiles/tmp_pfama.seed.k5s70/17479552389784082276/msa -v 3 

Time for processing: 0h 0m 0s 36ms

        STDERR:
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0
  0   114    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
100   114  100   114    0     0     45      0  0:00:02  0:00:02 --:--:--    45
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0
  0  146M    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
  0  146M    0  608k    0     0   182k      0  0:13:39  0:00:03  0:13:36  182k
  3  146M    3 5659k    0     0  1302k      0  0:01:54  0:00:04  0:01:50 1302k
 10  146M   10 15.4M    0     0  2955k      0  0:00:50  0:00:05  0:00:45 3155k
 18  146M   18 26.4M    0     0  4348k      0  0:00:34  0:00:06  0:00:28 5534k
 25  146M   25 37.3M    0     0  5285k      0  0:00:28  0:00:07  0:00:21 7810k
 33  146M   33 48.6M    0     0  6058k      0  0:00:24  0:00:08  0:00:16  9.8M
 41  146M   41 60.2M    0     0  6680k      0  0:00:22  0:00:09  0:00:13 11.1M
 49  146M   49 72.1M    0     0  7203k      0  0:00:20  0:00:10  0:00:10 11.5M
 57  146M   57 84.1M    0     0  7682k      0  0:00:19  0:00:11  0:00:08 11.5M
 65  146M   65 96.2M    0     0  8074k      0  0:00:18  0:00:12  0:00:06 11.8M
 74  146M   74  108M    0     0  8392k      0  0:00:17  0:00:13  0:00:04 11.9M
 82  146M   82  120M    0     0  8686k      0  0:00:17  0:00:14  0:00:03 12.1M
 90  146M   90  132M    0     0  8941k      0  0:00:16  0:00:15  0:00:01 12.2M
 99  146M   99  145M    0     0  9162k      0  0:00:16  0:00:16 --:--:-- 12.1M
100  146M  100  146M    0     0  9122k      0  0:00:16  0:00:16 --:--:-- 11.8M


