	description
PF10417	C-terminal domain of 1-Cys peroxiredoxin
PF12574	120 KDa Rickettsia surface antigen
PF00244	14-3-3 protein
PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
PF04029	2-phosphosulpholactate phosphatase
PF05635	23S rRNA-intervening sequence protein
PF08521	Two-component sensor kinase N-terminal
PF08793	2-cysteine adaptor domain
PF11591	Ferredoxin chloroplastic transit peptide
PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
PF08975	Domain of unknown function (DUF1868)
PF03390	2-hydroxycarboxylate transporter family
PF03171	2OG-Fe(II) oxygenase superfamily
PF13532	2OG-Fe(II) oxygenase superfamily
PF13640	2OG-Fe(II) oxygenase superfamily
PF13661	2OG-Fe(II) oxygenase superfamily
PF13759	Putative 2OG-Fe(II) oxygenase
PF10014	2OG-Fe dioxygenase
PF13239	2TM domain
PF13563	2'-5' RNA ligase superfamily
PF03475	3-alpha domain
PF06983	3-demethylubiquinone-9 3-methyltransferase
PF06052	3-hydroxyanthranilic acid dioxygenase
PF12578	Myotubularin-associated protein
PF00803	3A/RNA2 movement protein family
PF01073	3-beta hydroxysteroid dehydrogenase/isomerase family
PF06725	3D domain
PF02829	3H domain
PF10605	3HB-oligomer hydrolase (3HBOH)
PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
PF04419	4F5 protein family
PF03061	Thioesterase superfamily
PF13279	Thioesterase-like superfamily
PF13622	Thioesterase-like superfamily
PF12729	Four helix bundle sensory module for signal transduction
PF05902	4.1 protein C-terminal domain (CTD)
PF01812	5-formyltetrahydrofolate cyclo-ligase family
PF06189	5'-nucleotidase
PF09038	Tumour suppressor p53-binding protein-1 Tudor
PF03491	Serotonin (5-HT) neurotransmitter transporter, N-terminus
PF07694	5TMR of 5TMR-LYT
PF01367	5'-3' exonuclease, C-terminal SAM fold
PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
PF05761	5' nucleotidase family
PF02872	5'-nucleotidase, C-terminal domain
PF02096	60Kd inner membrane protein
PF01591	6-phosphofructo-2-kinase
PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
PF02495	7kD viral coat protein
PF02294	7kD DNA-binding domain
PF07698	7TM receptor with intracellular HD hydrolase
PF07696	7TMR-DISM extracellular 2
PF07695	7TM diverse intracellular signalling
PF07697	7TM-HD extracellular
PF00001	7 transmembrane receptor (rhodopsin family)
PF00002	7 transmembrane receptor (Secretin family)
PF00003	7 transmembrane sweet-taste receptor of 3 GCPR
PF13853	Olfactory receptor
PF02949	7tm Odorant receptor
PF08395	7tm Chemosensory receptor
PF02117	Serpentine type 7TM GPCR chemoreceptor Sra
PF10292	Serpentine type 7TM GPCR receptor class ab chemoreceptor
PF02175	Serpentine type 7TM GPCR chemoreceptor Srb
PF10316	Serpentine type 7TM GPCR chemoreceptor Srbc
PF10317	Serpentine type 7TM GPCR chemoreceptor Srd
PF10318	Serpentine type 7TM GPCR chemoreceptor Srh
PF10327	Serpentine type 7TM GPCR chemoreceptor Sri
PF10319	Serpentine type 7TM GPCR chemoreceptor Srj
PF10320	Serpentine type 7TM GPCR chemoreceptor Srsx
PF10321	Serpentine type 7TM GPCR chemoreceptor Srt
PF10322	Serpentine type 7TM GPCR chemoreceptor Sru
PF10323	Serpentine type 7TM GPCR chemoreceptor Srv
PF10324	Serpentine type 7TM GPCR chemoreceptor Srw
PF10328	Serpentine type 7TM GPCR chemoreceptor Srx
PF10325	Serpentine type 7TM GPCR chemoreceptor Srz
PF10326	Serpentine type 7TM GPCR chemoreceptor Str
PF14402	7 transmembrane helices usually fused to an inactive transglutaminase
PF07388	Alpha-2,8-polysialyltransferase (POLYST)
PF07966	A1 Propeptide
PF08792	A2L zinc ribbon domain
PF00207	Alpha-2-macroglobulin family
PF07678	A-macroglobulin complement component
PF01835	MG2 domain
PF07703	Alpha-2-macroglobulin family N-terminal region
PF07677	A-macroglobulin receptor
PF00004	ATPase family associated with various cellular activities (AAA)
PF09820	Predicted AAA-ATPase
PF12846	AAA-like domain
PF13086	AAA domain
PF13087	AAA domain
PF13166	AAA domain
PF13173	AAA domain
PF13175	AAA ATPase domain
PF13191	AAA ATPase domain
PF13207	AAA domain
PF13238	AAA domain
PF13245	Part of AAA domain
PF07724	AAA domain (Cdc48 subfamily)
PF13304	AAA domain
PF13401	AAA domain
PF13476	AAA domain
PF13479	AAA domain
PF13481	AAA domain
PF13500	AAA domain
PF13514	AAA domain
PF13521	AAA domain
PF13555	P-loop containing region of AAA domain
PF07726	ATPase family associated with various cellular activities (AAA)
PF13604	AAA domain
PF13614	AAA domain
PF13654	AAA domain
PF13671	AAA domain
PF13872	P-loop containing NTP hydrolase pore-1
PF14516	AAA-like domain
PF04326	Divergent AAA domain
PF07728	AAA domain (dynein-related subfamily)
PF12774	Hydrolytic ATP binding site of dynein motor region D1
PF12775	P-loop containing dynein motor region D3
PF12780	P-loop containing dynein motor region D4
PF12781	ATP-binding dynein motor region D5
PF14363	Domain associated at C-terminal with AAA
PF09821	C-terminal AAA-associated domain
PF08298	PrkA AAA domain
PF04611	Mating type protein A alpha Y mating type dependent binding region
PF03306	Alpha-acetolactate decarboxylase
PF05282	AAR2 protein
PF08142	AARP2CN (NUC121) domain
PF03417	Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
PF07247	Alcohol acetyltransferase
PF13339	Apoptosis antagonizing transcription factor
PF00696	Amino acid kinase family
PF00324	Amino acid permease
PF13520	Amino acid permease
PF13906	C-terminus of AA_permease
PF08403	Amino acid permease N-terminal
PF06684	Amino acid synthesis
PF01490	Transmembrane amino acid transporter protein
PF12430	Abscisic acid G-protein coupled receptor
PF02496	ABA/WDS induced protein
PF14156	Antirepressor AbbA
PF00950	ABC 3 transport family
PF03109	ABC1 family
PF01061	ABC-2 type transporter
PF12679	ABC-2 family transporter protein
PF12698	ABC-2 family transporter protein
PF12730	ABC-2 family transporter protein
PF13346	ABC-2 family transporter protein
PF06182	ABC-2 family transporter protein
PF09818	Predicted ATPase of the ABC class
PF09819	ABC-type cobalt transport system, permease component
PF00664	ABC transporter transmembrane region
PF06472	ABC transporter transmembrane region 2
PF13748	ABC transporter transmembrane region
PF04392	ABC transporter substrate binding protein
PF00005	ABC transporter
PF09822	ABC-type uncharacterized transport system
PF14510	ABC-transporter extracellular N-terminal
PF12848	ABC transporter
PF12407	Homeobox protein
PF05270	Alpha-L-arabinofuranosidase B (ABFB)
PF03806	AbgT putative transporter family
PF00561	alpha/beta hydrolase fold
PF02230	Phospholipase/Carboxylesterase
PF07859	alpha/beta hydrolase fold
PF08386	TAP-like protein
PF12695	Alpha/beta hydrolase family
PF12697	Alpha/beta hydrolase family
PF12715	Abhydrolase family
PF06259	Alpha/beta hydrolase
PF10081	Alpha/beta-hydrolase family
PF15420	Alpha/beta-hydrolase family N-terminus
PF04083	Partial alpha/beta-hydrolase lipase region
PF02517	CAAX protease self-immunity
PF14253	Bacteriophage abortive infection AbiH
PF07751	Abi-like protein
PF14355	Abortive infection C-terminus
PF07815	Abl-interactor HHR
PF03992	Antibiotic biosynthesis monooxygenase
PF09441	ARS binding protein 2
PF14250	AbrB-like transcriptional regulator
PF13000	Acetyl-coenzyme A transporter 1
PF00887	Acyl CoA binding protein
PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
PF08326	Acetyl-CoA carboxylase, central region
PF13822	Acyl-CoA carboxylase epsilon subunit
PF14733	AP2-coincident C-terminal
PF06315	Isocitrate dehydrogenase kinase/phosphatase (AceK)
PF00871	Acetokinase family
PF09290	Prokaryotic acetaldehyde dehydrogenase, dimerisation
PF08882	Acetone carboxylase gamma subunit
PF02550	Acetyl-CoA hydrolase/transferase N-terminal domain
PF13336	Acetyl-CoA hydrolase/transferase C-terminal domain
PF00583	Acetyltransferase (GNAT) family
PF13673	Acetyltransferase (GNAT) domain
PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
PF13880	ESCO1/2 acetyl-transferase
PF00797	N-acetyltransferase
PF13302	Acetyltransferase (GNAT) domain
PF13420	Acetyltransferase (GNAT) domain
PF13444	Acetyltransferase (GNAT) domain
PF13480	Acetyltransferase (GNAT) domain
PF13508	Acetyltransferase (GNAT) domain
PF13523	Acetyltransferase (GNAT) domain
PF13527	Acetyltransferase (GNAT) domain
PF14542	GCN5-related N-acetyl-transferase
PF08674	Acetylcholinesterase tetramerisation domain
PF15270	Metallo-carboxypeptidase inhibitor
PF03767	HAD superfamily, subfamily IIIB (Acid phosphatase)
PF12689	Acid Phosphatase
PF00330	Aconitase family (aconitate hydratase)
PF06434	Aconitate hydratase 2 N-terminus
PF11791	Aconitate B N-terminal domain
PF00694	Aconitase C-terminal domain
PF01756	Acyl-CoA oxidase
PF06857	Malonate decarboxylase delta subunit (MdcD)
PF05777	Drosophila accessory gland-specific peptide 26Ab (Acp26Ab)
PF06313	Drosophila ACP53EA protein
PF01648	4'-phosphopantetheinyl transferase superfamily
PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
PF00873	AcrB/AcrD/AcrF family
PF01842	ACT domain
PF09192	Actin-fragmin kinase, catalytic
PF05058	ActA Protein
PF00976	Corticotropin ACTH domain
PF00022	Actin
PF14408	Ribosomally synthesized peptide in actinomycetes
PF11657	Transcriptional activator TraM
PF11498	Transcriptional activator LAG-3
PF01064	Activin types I and II receptor domain
PF10000	ACT domain
PF13291	ACT domain
PF13710	ACT domain
PF13740	ACT domain
PF13840	ACT domain
PF01643	Acyl-ACP thioesterase
PF00441	Acyl-CoA dehydrogenase, C-terminal domain
PF08028	Acyl-CoA dehydrogenase, C-terminal domain
PF12806	Acetyl-CoA dehydrogenase C-terminal like
PF02770	Acyl-CoA dehydrogenase, middle domain
PF02771	Acyl-CoA dehydrogenase, N-terminal domain
PF14749	Acyl-coenzyme A oxidase N-terminal
PF12590	Acyl-ATP thioesterase
PF12186	Acyl-CoA dehydrogenase C terminal
PF12418	Acyl-CoA dehydrogenase N terminal
PF00708	Acylphosphatase
PF01553	Acyltransferase
PF02551	Acyl-CoA thioesterase
PF00698	Acyl transferase domain
PF02273	Acyl transferase
PF01757	Acyltransferase family
PF09793	Anticodon-binding domain
PF10198	Histone acetyltransferases subunit 3
PF08516	ADAM cysteine-rich
PF05986	ADAM-TS Spacer 1
PF10199	Alpha and gamma adaptin binding protein p34
PF01602	Adaptin N terminal region
PF00928	Adaptor complexes medium subunit family
PF02805	Metal binding domain of Ada
PF06314	Acetoacetate decarboxylase (ADC)
PF13382	Adenine deaminase C-terminal domain
PF03352	Methyladenine glycosylase
PF04008	Adenosine specific kinase
PF02438	Late 100kD protein
PF03052	Adenoviral protein L1 52/55-kDa
PF02703	Early E1A protein
PF01691	Adenovirus E1B 19K protein / small t-antigen
PF01696	Adenovirus EB1 55K protein / large t-antigen
PF04623	Adenovirus E1B protein N-terminus
PF06040	Adenovirus E3 protein
PF05248	Adenovirus E3A
PF03376	Adenovirus E3B protein
PF04834	Early E3 14.5 kDa protein
PF03307	Adenovirus 15.3kD protein in E3 region
PF02440	Adenovirus E3 region protein CR1
PF02439	Adenovirus E3 region protein CR2
PF05385	Mastadenovirus early E4 13 kDa protein
PF04528	Adenovirus early E4 34 kDa protein conserved region
PF06931	Mastadenovirus E4 ORF3 protein
PF04881	Adenovirus GP19K
PF01065	Hexon, adenovirus major coat protein, N-terminal domain
PF03678	Hexon, adenovirus major coat protein, C-terminal domain
PF02456	Adenovirus IVa2 protein
PF00541	Adenoviral fibre protein (knob domain)
PF01686	Adenovirus penton base protein
PF03955	Adenovirus hexon-associated protein (IX)
PF03910	Adenovirus minor core protein PV
PF01310	Adenovirus hexon associated protein, protein VIII
PF05829	Adenovirus late L2 mu core protein (Protein X)
PF00608	Adenoviral fibre protein (repeat/shaft region)
PF02459	Adenoviral DNA terminal protein
PF03228	Adenoviral core protein VII
PF01295	Adenylate cyclase, class-I
PF00709	Adenylosuccinate synthetase
PF12633	Adenylate cyclase NT domain
PF04439	Streptomycin adenylyltransferase
PF09085	Adhesion molecule, immunoglobulin-like
PF04619	Dr-family adhesin
PF03257	Mycoplasma adhesin P1
PF08240	Alcohol dehydrogenase GroES-like domain
PF13823	Alcohol dehydrogenase GroES-associated
PF00106	short chain dehydrogenase
PF13561	Enoyl-(Acyl carrier protein) reductase
PF00107	Zinc-binding dehydrogenase
PF13602	Zinc-binding dehydrogenase
PF11559	Afadin- and alpha -actinin-Binding
PF15202	Adipogenin
PF06377	Adipokinetic hormone
PF00406	Adenylate kinase
PF05191	Adenylate kinase, active site lid
PF05221	S-adenosyl-L-homocysteine hydrolase
PF00670	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
PF08132	S-adenosyl-l-methionine decarboxylase leader peptide
PF02675	S-adenosylmethionine decarboxylase
PF07757	Predicted AdoMet-dependent methyltransferase
PF01941	S-adenosylmethionine synthetase (AdoMet synthetase)
PF03496	ADP-ribosyltransferase exoenzyme
PF04587	ADP-specific Phosphofructokinase/Glucokinase conserved region
PF03747	ADP-ribosylglycohydrolase
PF10397	Adenylosuccinate lyase C-terminus
PF08509	Adenylate cyclase G-alpha binding domain
PF06355	Aegerolysin
PF01117	Aerolysin toxin
PF05110	AF-4 proto-oncoprotein
PF14591	AF0941-like
PF15017	Drug resistance and apoptosis regulator
PF14556	AF2331-like
PF05775	Enterobacteria AfaD invasin protein
PF15339	Acrosome formation-associated factor
PF03969	AFG1-like ATPase
PF07792	Docking domain of Afi1 for Arf3 in vesicle trafficking
PF08493	Aflatoxin regulatory protein
PF01314	Aldehyde ferredoxin oxidoreductase, domains 2 & 3
PF02730	Aldehyde ferredoxin oxidoreductase, N-terminal domain
PF02420	Insect antifreeze protein repeat
PF03756	A-factor biosynthesis hotdog domain
PF08731	Transcription factor AFT
PF11786	Aft1 HRA domain
PF11787	Aft1 HRR domain
PF11785	Aft1 osmotic stress response (OSM) domain
PF12249	Arabinofuranosyltransferase A C terminal
PF12250	Arabinofuranosyltransferase N terminal
PF04671	Erythrocyte membrane-associated giant protein antigen 332
PF05641	Agenet domain
PF07468	Agglutinin
PF05039	Agouti protein
PF10427	Argonaute hook
PF04647	Accessory gene regulator B
PF05931	Staphylococcal AgrD protein
PF04730	Agrobacterium VirD5 protein
PF11440	DNA alpha-glucosyltransferase
PF06396	Angiotensin II, type I receptor-associated protein (AGTRAP)
PF09229	Activator of Hsp90 ATPase, N-terminal
PF14412	A nuclease family of the HNH/ENDO VII superfamily with conserved AHH
PF00578	AhpC/TSA family
PF13911	AhpC/TSA antioxidant enzyme
PF02682	Allophanate hydrolase subunit 1
PF02626	Allophanate hydrolase subunit 2
PF08327	Activator of Hsp90 ATPase homolog 1-like protein
PF09236	Alpha-haemoglobin stabilising protein
PF15334	Aurora kinase A and ninein interacting protein
PF01808	AICARFT/IMPCHase bienzyme
PF14186	Cytoskeletal adhesion
PF08910	Aida N-terminus
PF14962	Mitochondria Localisation Sequence
PF14721	Apoptosis-inducing factor, mitochondrion-associated, C-term
PF04548	AIG1 family
PF06094	AIG2-like family
PF13772	AIG2-like family
PF06316	Enterobacterial Ail/Lom protein
PF01987	Mitochondrial biogenesis AIM24
PF03915	Actin interacting protein 3
PF10592	AIPR protein
PF00731	AIR carboxylase
PF00586	AIR synthase related protein, N-terminal domain
PF02769	AIR synthase related protein, C-terminal domain
PF15298	AJAP1/PANP C-terminus
PF14469	28 kDa A-kinase anchor
PF15304	A-kinase anchor protein 2 C-terminus
PF10469	AKAP7 2'5' RNA ligase-like domain
PF10470	PKA-RI-RII subunit binding domain of A-kinase anchor protein
PF04988	A-kinase anchoring protein 95 (AKAP95)
PF05716	A-kinase anchor protein 110 kDa (AKAP 110)
PF12443	AT-hook-containing transcription factor
PF00490	Delta-aminolevulinic acid dehydratase
PF01262	Alanine dehydrogenase/PNT, C-terminal domain
PF05222	Alanine dehydrogenase/PNT, N-terminal domain
PF00842	Alanine racemase, C-terminal domain
PF01168	Alanine racemase, N-terminal domain
PF09135	Alb1
PF01918	Alba
PF08027	Albumin I
PF11606	Family 31 carbohydrate binding protein
PF00171	Aldehyde dehydrogenase family
PF01081	KDPG and KHG aldolase
PF10120	Putative aldolase
PF00596	Class II Aldolase and Adducin N-terminal domain
PF01263	Aldose 1-epimerase
PF00248	Aldo/keto reductase family
PF01315	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
PF02738	Molybdopterin-binding domain of aldehyde dehydrogenase
PF03752	Short repeats of unknown function
PF08660	Oligosaccharide biosynthesis protein Alg14 like
PF05208	ALG3 protein
PF03155	ALG6, ALG8 glycosyltransferase family
PF11182	Alginate O-acetyl transferase AlgF
PF13372	Alginate export
PF05426	Alginate lyase
PF08787	Alginate lyase
PF13949	ALIX V-shaped domain binding to HIV
PF06029	AlkA N-terminal domain
PF14864	Alkyl sulfatase C-terminal
PF14863	Alkyl sulfatase dimerisation
PF00245	Alkaline phosphatase
PF03561	Allantoicase repeat
PF05953	Allatostatin
PF06351	Allene oxide cyclase
PF05549	Allexivirus 40kDa protein
PF04864	Allinase
PF15309	ALMS motif
PF11744	Aluminium activated malate transporter
PF04030	D-arabinono-1,4-lactone oxidase
PF06401	Alpha-2-macroglobulin RAP, C-terminal domain
PF06400	Alpha-2-macroglobulin RAP, N-terminal domain
PF00128	Alpha amylase, catalytic domain
PF02806	Alpha amylase, C-terminal all-beta domain
PF02903	Alpha amylase, N-terminal ig-like domain
PF09071	Alpha-amylase, C terminal
PF07821	Alpha-amylase C-terminal beta-sheet domain
PF04168	A predicted alpha-helical domain with a conserved ER motif.
PF14456	Alpha-helical domain 2
PF06964	Alpha-L-arabinofuranosidase C-terminus
PF09261	Alpha mannosidase, middle domain
PF08829	Alpha C protein N terminal
PF02883	Adaptin C-terminal domain
PF02296	Alpha adaptin AP2, C-terminal domain
PF01589	Alphavirus E1 glycoprotein
PF00943	Alphavirus E2 glycoprotein
PF01563	Alphavirus E3 glycoprotein
PF03229	Alphavirus glycoprotein J
PF02816	Alpha-kinase family
PF01120	Alpha-L-fucosidase
PF02232	Alpha trans-inducing protein (Alpha-TIF)
PF09608	Putative transmembrane protein (Alph_Pro_TM)
PF15299	Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
PF10369	Small subunit of acetolactate synthase
PF11092	Neuronal protein 3.1 (p311)
PF02430	Apical membrane antigen 1
PF07344	Amastin surface glycoprotein
PF03913	Amb V Allergen
PF12475	Amdovirus non-structural protein
PF05111	Ameloblastin precursor (Amelin)
PF02948	Amelogenin
PF12190	Fungal protease inhibitor
PF04709	Anti-Mullerian hormone, N terminal region
PF01425	Amidase
PF12123	N-acetylmuramoyl-l-alanine amidase
PF01510	N-acetylmuramoyl-L-alanine amidase
PF01520	N-acetylmuramoyl-L-alanine amidase
PF05382	Bacteriophage peptidoglycan hydrolase
PF12671	Putative amidase domain
PF02274	Amidinotransferase
PF01979	Amidohydrolase family
PF04909	Amidohydrolase
PF07969	Amidohydrolase family
PF13147	Amidohydrolase
PF13594	Amidohydrolase
PF12224	Putative amidoligase enzyme
PF09663	Amidohydrolase ring-opening protein (Amido_AtzD_TrzD)
PF11741	AMIN domain
PF10706	Aminoglycoside-2''-adenylyltransferase
PF00155	Aminotransferase class I and II
PF00202	Aminotransferase class-III
PF01063	Aminotransferase class IV
PF00266	Aminotransferase class-V
PF12897	Alanine-glyoxylate amino-transferase
PF01593	Flavin containing amine oxidoreductase
PF02293	AmiS/UreI family transporter
PF01871	AMMECR1
PF00909	Ammonium Transporter Family
PF14828	Amnionless
PF10423	Bacterial AMP nucleoside phosphorylase N-terminus
PF02461	Ammonia monooxygenase
PF05145	Putative ammonia monooxygenase
PF04896	Ammonia monooxygenase/methane monooxygenase, subunit C
PF03782	AMOP domain
PF00501	AMP-binding enzyme
PF13193	AMP-binding enzyme C-terminal domain
PF14535	AMP-binding enzyme C-terminal domain
PF04739	5'-AMP-activated protein kinase beta subunit, interation domain
PF05195	Aminopeptidase P, N-terminal domain
PF15243	Anaphase-promoting complex subunit 15
PF01821	Anaphylotoxin-like domain
PF02166	Androgen receptor
PF06369	Sea anemone cytotoxic protein
PF03139	Vanadium/alternative nitrogenase delta subunit
PF09582	Iron only nitrogenase protein AnfO (AnfO_nitrog)
PF01094	Receptor family ligand binding region
PF12240	Angiomotin C terminal
PF08174	Cell division protein anillin
PF00023	Ankyrin repeat
PF07260	Progressive ankylosis protein (ANKH)
PF12796	Ankyrin repeats (3 copies)
PF13606	Ankyrin repeat
PF13637	Ankyrin repeats (many copies)
PF13857	Ankyrin repeats (many copies)
PF00191	Annexin
PF04547	Calcium-activated chloride channel
PF10731	Thrombin inhibitor from mosquito
PF00212	Atrial natriuretic peptide
PF03452	Anp1
PF03374	Phage antirepressor protein KilAC domain
PF08346	AntA/AntB antirepressor
PF03861	ANTAR domain
PF07651	ANTH domain
PF09156	Anthrax toxin lethal factor, middle domain
PF03497	Anthrax toxin LF subunit
PF05587	Anthrax receptor extracellular domain
PF04715	Anthranilate synthase component I, N terminal region
PF10796	Sigma-S stabilisation anti-adaptor protein
PF02522	Aminoglycoside 3-N-acetyltransferase
PF08264	Anticodon-binding domain of tRNA
PF11410	Antifungal peptide
PF11402	Antifungal protein
PF11641	Glycosylphosphatidylinositol-anchored merozoite surface protein
PF09255	Caf1 Capsule antigen
PF08105	Metchnikowin family
PF08106	Formaecin family
PF08107	Pleurocidin family
PF08108	Halocidin family
PF08109	Lactocin 705 family
PF08110	Ocellatin family
PF08129	Alpha/beta enterocin family
PF08130	Type A lantibiotic family
PF08225	Pseudin antimicrobial peptide
PF08256	Aurein-like antibiotic peptide
PF14861	Plant antimicrobial peptide
PF08018	Frog antimicrobial peptide
PF08023	Frog antimicrobial peptide
PF08025	Spider antimicrobial peptide
PF08024	Ant antimicrobial peptide
PF08026	Bee antimicrobial peptide
PF08036	Diapausin family of antimicrobial peptide
PF08102	Scorpion antimicrobial peptide
PF08103	Uperin family
PF08104	Ponericin L family
PF03230	Antirestriction protein
PF02822	Antistasin family
PF03589	Antitermination protein
PF04014	Antidote-toxin recognition MazE
PF05586	Anthrax receptor C-terminus region
PF03098	Animal haem peroxidase
PF01786	Alternative oxidase
PF15001	AP-5 complex subunit sigma-1
PF00847	AP2 domain
PF14796	Clathrin-adaptor complex-3 beta-1 subunit C-terminal
PF14807	Adaptin AP4 complex epsilon appendage platform
PF02558	Ketopantoate reductase PanE/ApbA
PF08546	Ketopantoate reductase PanE/ApbA C terminal
PF02424	ApbE family
PF12859	Anaphase-promoting complex subunit 1
PF03256	Anaphase-promoting complex, subunit 10 (APC10)
PF05839	Apc13p protein
PF05841	Apc15p protein
PF08672	Anaphase promoting complex (APC) subunit 2
PF12895	Anaphase-promoting complex, cyclosome, subunit 3
PF12896	Anaphase-promoting complex, cyclosome, subunit 4
PF12894	Anaphase-promoting complex subunit 4 WD40 domain
PF12862	Anaphase-promoting complex subunit 5
PF04049	Anaphase promoting complex subunit 8 / Cdc23
PF12856	Anaphase-promoting complex subunit 9
PF14921	Adenomatosis polyposis coli down-regulated 1
PF05972	APC 15 residue motif
PF05956	APC basic domain
PF10471	Anaphase-promoting complex APC subunit 1
PF05923	APC cysteine-rich region
PF15360	APJ endogenous ligand
PF04110	Ubiquitin-like autophagy protein Apg12
PF04108	Autophagy protein Apg17
PF04106	Autophagy protein Apg5
PF04111	Autophagy protein Apg6
PF04109	Autophagy protein Apg9
PF01636	Phosphotransferase enzyme family
PF06105	Aph-1 protein
PF14557	Putative AphA-like transcriptional regulator
PF04655	Aminoglycoside/hydroxyurea antibiotic resistance kinase
PF05918	Apoptosis inhibitory protein 5 (API5)
PF00807	Apidaecin
PF11671	Complementary sex determiner protein
PF05355	Apolipoprotein C-II
PF05778	Apolipoprotein CIII (Apo-CIII)
PF05418	Apovitellenin I (Apo-VLDL-II)
PF04711	Apolipoprotein A-II (ApoA-II)
PF12491	Apolipoprotein B100 C terminal
PF05240	APOBEC-like C-terminal domain
PF08210	APOBEC-like N-terminal domain
PF04691	Apolipoprotein C-I (ApoC-1)
PF15119	Apolipoprotein C4
PF01333	Apocytochrome F, C-terminal
PF05461	Apolipoprotein L
PF01442	Apolipoprotein A1/A4/E domain
PF15148	Apolipoprotein F
PF07464	Apolipophorin-III precursor (apoLp-III)
PF11032	Apolipoprotein M (ApoM)
PF09769	Apolipoprotein O
PF05634	APO RNA-binding
PF10515	beta-amyloid precursor protein C-terminus
PF12924	Copper-binding of amyloid precursor, CuBD
PF12925	E2 domain of amyloid precursor protein
PF02177	Amyloid A4 N-terminal heparin-binding
PF12716	Nuclear pore assembly and biogenesis
PF12139	Adenosine-5'-phosphosulfate reductase beta subunit
PF01583	Adenylylsulphate kinase
PF03440	Aerolysin/Pertussis toxin (APT) domain
PF10351	Golgi-body localisation protein domain
PF06079	Apyrase
PF01261	Xylose isomerase-like TIM barrel
PF07582	AP endonuclease family 2 C terminus
PF12489	Nuclear coactivator
PF09206	Alpha-L-arabinofuranosidase B, catalytic
PF12625	Arabinose-binding domain of AraC transcription regulator, N-term
PF02610	L-arabinose isomerase
PF11762	L-arabinose isomerase C-terminal domain
PF04602	Mycobacterial cell wall arabinan synthesis protein
PF14896	EmbC C-terminal domain
PF02311	AraC-like ligand binding domain
PF14525	AraC-binding-like domain
PF06719	AraC-type transcriptional regulator N-terminus
PF09692	Argonaute siRNA chaperone (ARC) complex subunit Arb1
PF09757	Arb2 domain
PF03869	Arc-like DNA binding domain
PF12942	Archaeal ammonia monooxygenase subunit A (AmoA)
PF01951	Archease protein family (MTH1598/TM1083)
PF01637	Archaeal ATPase
PF01917	Archaebacterial flagellin
PF04659	Archaeal flagella protein
PF06819	Archaeal Peptidase A24 C-terminal Domain
PF06847	Archaeal Peptidase A24 C-terminus Type II
PF08394	Archaeal TRASH domain
PF03079	ARD/ARD' family
PF07275	Antirestriction protein (ArdA)
PF07573	Nitrogen regulatory protein AreA N terminus
PF00798	Arenavirus glycoprotein
PF00843	Arenavirus nucleocapsid protein
PF06317	Arenavirus RNA polymerase
PF00025	ADP-ribosylation factor family
PF14949	ARF7 effector protein C-terminus
PF06456	Arfaptin-like domain
PF01412	Putative GTPase activating protein for Arf
PF00491	Arginase family
PF00764	Arginosuccinate synthase
PF01960	ArgJ family
PF03308	ArgK protein
PF15346	Arginine and glutamate-rich 1
PF11581	Antagonist of EGFR signalling, Argos
PF01316	Arginine repressor, DNA binding domain
PF02863	Arginine repressor, C-terminal domain
PF03485	Arginyl tRNA synthetase N terminal domain
PF15441	Rho guanine nucleotide exchange factor 5/35
PF01388	ARID/BRIGHT DNA binding domain
PF06770	Actin-rearrangement-inducing factor (Arif-1)
PF11527	The ARF-like 2 binding protein BART
PF15062	Haemopoietic lineage transmembrane helix
PF00514	Armadillo/beta-catenin-like repeat
PF10208	Degradation arginine-rich protein for mis-folding
PF04826	Armadillo-like
PF07302	AroM protein
PF11723	Homotrimeric ring hydroxylase
PF05856	ARP2/3 complex 20 kDa subunit (ARPC4)
PF12120	Rifampin ADP-ribosyl transferase
PF02752	Arrestin (or S-antigen), C-terminal domain
PF00339	Arrestin (or S-antigen), N-terminal domain
PF04959	Arsenite-resistance protein 2
PF02374	Anion-transporting ATPase
PF02040	Arsenical pump membrane protein
PF03960	ArsC family
PF06953	Arsenical resistance operon trans-acting repressor ArsD
PF09824	ArsR transcriptional regulator
PF01129	NAD:arginine ADP-ribosyltransferase
PF01606	Arterivirus envelope protein
PF00951	Arterivirus GL envelope glycoprotein
PF02497	Arterivirus glycoprotein
PF01481	Arterivirus nucleocapsid protein
PF04161	Arv1-like family
PF01731	Arylesterase
PF05935	Arylsulfotransferase (ASST)
PF14269	Arylsulfotransferase (ASST)
PF00858	Amiloride-sensitive sodium channel
PF04266	ASCH domain
PF08688	Apx/Shroom domain ASD1
PF08687	Apx/Shroom domain ASD2
PF04729	ASF1 like histone chaperone
PF01671	African swine fever virus multigene family 360 protein
PF05568	African swine fever virus J13L protein
PF05293	African swine fever virus (ASFV) L11L protein
PF06556	IAP-like protein p27 C-terminus
PF15323	Developmental protein
PF09010	Anti-Sigma Factor A
PF08328	Adenylosuccinate lyase C-terminal
PF14698	Argininosuccinate lyase C-terminal
PF05170	AsmA family
PF13109	AsmA-like C-terminal region
PF13502	AsmA-like C-terminal region
PF03590	Aspartate-ammonia ligase
PF01037	AsnC family
PF00733	Asparagine synthase
PF00026	Eukaryotic aspartyl protease
PF06826	Predicted Permease Membrane Region
PF05279	Aspartyl beta-hydroxylase N-terminal region
PF03780	Asp23 family
PF00710	Asparaginase
PF01112	Asparaginase
PF06089	L-asparaginase II
PF14521	Lysine-specific metallo-endopeptidase
PF05118	Aspartyl/Asparaginyl beta-hydroxylase
PF02261	Aspartate decarboxylase
PF01177	Asp/Glu/Hydantoin racemase
PF14669	Putative aspartate racemase
PF09668	Aspartyl protease
PF13650	Aspartyl protease
PF06392	Acid shock protein repeat
PF07100	Anabaena sensory rhodopsin transducer
PF04958	Arginine N-succinyltransferase beta subunit
PF01400	Astacin (Peptidase family M12A)
PF04996	Succinylarginine dihydrolase
PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
PF03115	Astrovirus capsid protein precursor
PF12226	Turkey astrovirus capsid protein
PF13919	Asx homology domain
PF15321	ATPase family AAA domain containing 4
PF14196	L-2-amino-thiazoline-4-carboxylic acid hydrolase
PF04377	Arginine-tRNA-protein transferase, C terminus
PF04376	Arginine-tRNA-protein transferase, N terminus
PF10377	Autophagy-related protein 11
PF10033	Autophagy-related protein 13
PF10186	UV radiation resistance protein and autophagy-related subunit 14
PF08614	Autophagy protein 16 (ATG16)
PF12744	Autophagy protein Atg19, Atg8-binding
PF11700	Vacuole effluxer Atg22 like
PF09451	Autophagy-related protein 27
PF13329	Autophagy-related protein 2 CAD motif
PF09795	Autophagy-related protein 31
PF02991	Autophagy protein Atg8 ubiquitin like
PF09333	ATG C terminal domain
PF03078	ATHILA ORF-1 family
PF07737	Anthrax toxin lethal factor, N- and C-terminal domain
PF03477	ATP cone domain
PF02222	ATP-grasp domain
PF08442	ATP-grasp domain
PF02655	ATP-grasp domain
PF13535	ATP-grasp domain
PF13549	ATP-grasp domain
PF00217	ATP:guanido phosphotransferase, C-terminal catalytic domain
PF02807	ATP:guanido phosphotransferase, N-terminal domain
PF01747	ATP-sulfurylase
PF00231	ATP synthase
PF05176	ATP10 protein
PF00895	ATP synthase protein 8
PF00119	ATP synthase A chain
PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
PF00306	ATP synthase alpha/beta chain, C terminal domain
PF02874	ATP synthase alpha/beta family, beta-barrel domain
PF00430	ATP synthase B/B' CF(0)
PF00137	ATP synthase subunit C
PF01813	ATP synthase subunit D
PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
PF05680	ATP synthase E chain
PF04627	Mitochondrial ATP synthase epsilon chain
PF08112	ATP synthase epsilon subunit
PF01990	ATP synthase (F/14-kDa) subunit
PF05511	Mitochondrial ATP synthase coupling factor 6
PF04718	Mitochondrial ATP synthase g subunit
PF04911	ATP synthase j chain
PF05827	Vacuolar ATP synthase subunit S1 (ATP6S1)
PF06644	ATP11 protein
PF07542	ATP12 chaperone protein
PF12921	Mitochondrial ATPase expression
PF02038	ATP1G1/PLM/MAT8 family
PF12156	Putative metal-binding domain of cation transport ATPase
PF09527	Putative F0F1-ATPase subunit (ATPase_gene1)
PF14397	Sugar-transfer associated ATP-grasp
PF15632	ATP-grasp in the biosynthetic pathway with Ter operon
PF14305	TupA-like ATPgrasp
PF14398	YheC/D like ATP-grasp
PF12966	N-ATPase, AtpR subunit
PF03029	Conserved hypothetical ATP binding protein
PF03668	P-loop ATPase protein family
PF01171	PP-loop family
PF01902	ATP-binding region
PF12424	Plasma membrane calcium transporter ATPase C terminal
PF10775	ATP synthase complex subunit h
PF14960	ATP synthase regulation
PF05493	ATP synthase subunit H
PF03899	ATP synthase I chain
PF09830	ATP adenylyltransferase
PF05353	Delta Atracotoxin
PF03154	Atrophin-1 family
PF15445	acidic terminal segments, variant surface antigen of PfEMP1
PF06232	Embryo-specific protein 3, (ATS3)
PF11263	Borrelia burgdorferi attachment protein P66
PF03769	Attacin, C-terminal region
PF03768	Attacin, N-terminal region
PF08037	Attractin family
PF11512	Agrobacterium tumefaciens protein Atu4866
PF09759	Spinocerebellar ataxia type 10 protein domain
PF12547	Capicua transcriptional repressor modulator
PF08098	Anemonia sulcata toxin III family
PF02178	AT hook motif
PF15187	Oesophageal cancer-related gene 4
PF11583	P-aminobenzoate N-oxygenase AurF
PF09041	Aurora-A binding
PF03472	Autoinducer binding domain
PF00765	Autoinducer synthetase
PF03987	Autophagocytosis associated protein, active-site domain
PF10381	Autophagocytosis associated protein C-terminal
PF03986	Autophagocytosis associated protein (Atg3), N-terminal domain
PF03797	Autotransporter beta-domain
PF12951	Autotransporter-associated beta strand repeat
PF06677	Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
PF15336	Autism susceptibility gene 2 protein
PF02041	Auxin binding protein
PF05703	Auxin canalisation
PF02519	Auxin responsive protein
PF05564	Dormancy/auxin associated protein
PF06507	Auxin response factor
PF02309	AUX/IAA family
PF03708	Avian retrovirus envelope protein, gp85
PF01382	Avidin family
PF11599	RRNA methyltransferase AviRa
PF03377	Xanthomonas avirulence protein, Avr/PthA
PF09794	Transport protein Avl9
PF05394	Avirulence protein
PF05655	Pseudomonas avirulence D protein (AvrD)
PF11725	Pathogenicity factor
PF11529	Melampsora lini avirulence protein AvrL567-A
PF09143	AvrPphF-ORF-2
PF11592	Central core of the bacterial effector protein AvrPto
PF09046	AvrPtoB E3 ubiquitin ligase
PF05627	Cleavage site for pathogenic type III effector avirulence factor Avr
PF06536	Avian adenovirus fibre
PF05512	AWPM-19-like family
PF05448	Acetyl xylan esterase (AXE1)
PF08517	Ataxin-1 and HBP1 module (AXH)
PF08833	Axin beta-catenin binding domain
PF10211	Axonemal dynein light chain
PF03591	AzlC protein
PF05437	Branched-chain amino acid transport protein (AzlD)
PF01356	Alpha amylase inhibitor
PF02137	Adenosine-deaminase (editase) domain
PF00962	Adenosine/AMP deaminase
PF08451	Adenosine/AMP deaminase N-terminal
PF09713	Plant protein 1589 of unknown function (A_thal_3526)
PF02216	B domain
PF04182	B-block binding subunit of TFIIIC
PF02246	Protein L b1 domain
PF02310	B12 binding domain
PF02607	B12 binding domain
PF06522	NADH-ubiquinone reductase complex 1 MLRQ subunit
PF11473	RNA binding protein B2
PF09066	Beta2-adaptin appendage, C-terminal sub-domain
PF02362	B3 DNA binding domain
PF03483	B3/4 domain
PF03484	tRNA synthetase B5 domain
PF01603	Protein phosphatase 2A regulatory B subunit (B56 family)
PF07162	Ciliary basal body-associated, B9 protein
PF07886	BA14K-like protein
PF06989	BAALC N-terminus
PF08840	BAAT / Acyl-CoA thioester hydrolase C terminal
PF02673	Bacitracin resistance protein BacA
PF05791	Bacillus haemolytic enterotoxin (HBL)
PF05968	Bacillus PapR protein
PF07707	BTB And C-terminal Kelch
PF13004	Bacteroidetes-Associated Carbohydrate-binding Often N-terminal
PF10432	Bacterial phospho-glucose isomerase C-terminal region
PF12173	Bacteriocin class IIc cyclic gassericin A-like
PF01721	Class II bacteriocin
PF10439	Bacteriocin class II with double-glycine leader peptide
PF09221	Bacteriocin class IId cyclical uberolysin-like
PF11758	Aureocin-like type II bacteriocin
PF14406	Ribosomally synthesized peptide in Bacteroidetes
PF04519	Polymer-forming cytoskeletal
PF08379	Bacterial transglutaminase-like N-terminal region
PF06143	Baculovirus 11 kDa family
PF04798	Baculovirus 19 kDa protein conserved region
PF04631	Baculovirus hypothetical protein
PF06096	Baculoviridae 8.2 KDa protein
PF04786	ssDNA binding protein
PF05274	Occlusion-derived virus envelope protein E25
PF04639	Baculoviral E56 protein, specific to ODV envelope
PF04850	Baculovirus E66 occlusion-derived virus envelope protein
PF03258	Baculovirus FP protein
PF04700	Structural glycoprotein p40/gp41 conserved region
PF03273	Baculovirus gp64 envelope glycoprotein family
PF04735	Baculovirus DNA helicase
PF05290	Baculovirus immediate-early protein (IE-0)
PF07206	Baculovirus late expression factor 10 (LEF-10)
PF06385	Baculovirus LEF-11 protein
PF03041	lef-2
PF05847	Nucleopolyhedrovirus late expression factor 3 (LEF-3)
PF04838	Baculoviridae late expression factor 5
PF11792	Baculoviridae late expression factor 5 C-terminal domain
PF06061	Baculoviridae ME53
PF05314	Baculovirus occlusion-derived virus envelope protein EC27
PF05073	Baculovirus P24 capsid protein
PF04766	Nucleopolyhedrovirus p26 protein
PF05214	Baculovirus P33
PF05112	Baculovirus P47 protein
PF04878	Baculovirus P48 protein
PF04583	Baculoviridae p74 conserved region
PF08404	Baculoviridae P74 N-terminal
PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus
PF04512	Baculovirus polyhedron envelope protein, PEP, N terminus
PF05311	Baculovirus 33KDa late protein (PP31)
PF05883	Baculovirus U-box/Ring-like domain
PF05789	Baculovirus VP1054 protein
PF04501	Baculovirus major capsid protein VP39
PF08475	Viral capsid protein 91 N-terminal
PF04913	Baculovirus Y142 protein
PF02043	Bacteriochlorophyll C binding protein
PF00308	Bacterial dnaA  protein
PF08299	Bacterial dnaA protein helix-turn-helix
PF00216	Bacterial DNA-binding protein
PF01311	Bacterial export proteins, family 1
PF01312	FlhB HrpN YscU SpaS Family
PF01313	Bacterial export proteins, family 3
PF05088	Bacterial NAD-glutamate dehydrogenase
PF01152	Bacterial-like globin
PF00296	Luciferase-like monooxygenase
PF05592	Bacterial alpha-L-rhamnosidase
PF08531	Alpha-L-rhamnosidase N-terminal domain
PF01036	Bacteriorhodopsin-like protein
PF09501	Probable sporulation protein (Bac_small_yrzI)
PF01103	Surface antigen
PF01338	Bacillus thuringiensis toxin
PF02397	Bacterial sugar transferase
PF01654	Bacterial Cytochrome Ubiquinol Oxidase
PF02961	Barrier to autointegration factor
PF04684	BAF1 / ABF1 chromatin reorganising factor
PF09256	BAFF-R, TALL-1 binding
PF02179	BAG domain
PF08180	B melanoma antigen family
PF01426	BAH domain
PF06861	BALF1 protein
PF06211	BMP and activin membrane-bound inhibitor (BAMBI) N-terminal domain
PF02923	Restriction endonuclease BamHI
PF07565	Band 3 cytoplasmic domain
PF01145	SPFH domain / Band 7 family
PF13421	SPFH domain-Band 7 family
PF06639	Basal layer antifungal peptide (BAP)
PF05529	B-cell receptor-associated protein 31-like
PF03114	BAR domain
PF01337	Barstar (barnase inhibitor)
PF15462	Bartter syndrome, infantile, with sensorineural deafness (Barttin)
PF00967	Barwin family
PF10455	Bin/amphiphysin/Rvs domain for vesicular trafficking
PF10456	WASP-binding domain of Sorting nexin protein
PF04865	Baseplate J-like protein
PF01586	Myogenic Basic domain
PF05466	Brain acid soluble protein 1 (BASP1 protein)
PF07001	BAT2 N-terminus
PF07584	Aerotolerance regulator N-terminal
PF13584	Oxygen tolerance
PF06968	Biotin and Thiamin Synthesis associated domain
PF01027	Inhibitor of apoptosis-promoting Bax1
PF12811	Bax inhibitor 1 like
PF08031	Berberine and berberine like
PF14777	Cilia BBSome complex subunit 10
PF15272	Spindle pole body component BBP1, C-terminal
PF15271	Spindle pole body component BBP1, Mps2-binding protein
PF14779	Ciliary BBSome complex subunit 1
PF14782	Ciliary BBSome complex subunit 2, C-terminal
PF14783	Ciliary BBSome complex subunit 2, middle region
PF14781	Ciliary BBSome complex subunit 2, N-terminal
PF06726	Bladder cancer-related protein BC10
PF05700	Breast carcinoma amplified sequence 2 (BCAS2)
PF12490	Breast carcinoma amplified sequence 3
PF12399	Branched-chain amino acid ATP-binding cassette transporter
PF02028	BCCT family transporter
PF15461	Beta-carotene 15,15'-dioxygenase
PF10436	Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
PF07284	2-vinyl bacteriochlorophyllide hydratase (BCHF)
PF02327	Bacteriochlorophyll A protein
PF13862	p21-C-terminal region-binding protein
PF00452	Apoptosis regulator proteins, Bcl-2 family
PF12201	Bcl2-interacting killer, BH3-domain containing
PF15286	Apoptosis regulator M11, B cell 2 leukaemia/lymphoma like
PF10514	Pro-apoptotic Bcl-2 protein, BAD
PF11502	B-cell lymphoma 9 protein
PF12304	Beta-casein like protein
PF15318	Putative Bcl-2 like protein of testis
PF08945	Bcl-x interacting, BH3 domain
PF04714	BCL7, N-terminal conserver region
PF09257	BCMA, TALL-1 binding
PF07572	Bucentaur or craniofacial development
PF09036	Bcr-Abl oncoprotein oligomerisation domain
PF01869	BadF/BadG/BcrA/BcrD ATPase family
PF08740	BCS1 N terminal
PF03170	Bacterial cellulose synthase subunit
PF05420	Cellulose synthase operon protein C C-terminus (BCSC_C)
PF14439	Bd3614-like deaminase
PF14442	Bd3614-like deaminase N-terminal
PF08072	BDHCT (NUC031) domain
PF10684	Putative biofilm-dependent modulation protein
PF06208	Borna disease virus G protein
PF06515	Borna disease virus P10 protein
PF06595	Borna disease virus P24 protein
PF06407	Borna disease virus P40 protein
PF02138	Beige/BEACH domain
PF10523	BEN domain
PF03594	Benzoate membrane transport protein
PF07255	Benyvirus 14KDa protein
PF05744	Benyvirus P25/P26 protein
PF02944	BESS motif
PF01062	Bestrophin, RFP-TM, chloride channel
PF03494	Beta-amyloid peptide (beta-APP)
PF10996	Beta-Casp domain
PF00144	Beta-lactamase
PF13354	Beta-lactamase enzyme family
PF12125	D domain of beta-TrCP
PF10435	Beta-galactosidase, domain 2
PF13363	Beta-galactosidase, domain 3
PF13364	Beta-galactosidase jelly roll domain
PF01212	Beta-eliminating lyase
PF13229	Right handed beta helix region
PF09826	Beta propeller domain
PF14350	Beta protein
PF08667	BetR domain
PF00407	Pathogenesis-related protein Bet v I family
PF04538	Brain expressed X-linked like family
PF02929	Beta galactosidase small chain
PF15285	Beclin-1 BH3 domain, Bcl-2-interacting
PF02180	Bcl-2 homology region 4
PF10403	Rad4 beta-hairpin domain 1
PF10404	Rad4 beta-hairpin domain 2
PF10405	Rad4 beta-hairpin domain 3
PF14215	bHLH-MYC and R2R3-MYB transcription factors N-terminal
PF09730	Microtubule-associated protein Bicaudal-D
PF06393	BH3 interacting domain (BID)
PF02369	Bacterial Ig-like domain (group 1)
PF02368	Bacterial Ig-like domain (group 2)
PF07523	Bacterial Ig-like domain (group 3)
PF12245	Bacterial Ig-like domain (group 3)
PF13750	Bacterial Ig-like domain (group 3)
PF13754	Bacterial Ig-like domain (group 3)
PF07532	Bacterial Ig-like domain (group 4)
PF13205	Bacterial Ig-like domain
PF04775	Acyl-CoA thioester hydrolase/BAAT N-terminal region
PF09166	Biliverdin reductase, catalytic
PF06773	Bim protein N-terminus
PF06859	Bicoid-interacting protein 3 (Bin3)
PF03495	Clostridial binary toxin B/anthrax toxin PA
PF02084	Bindin
PF08149	BING4CT (NUC141) domain
PF00351	Biopterin-dependent aromatic amino acid hydroxylase
PF15368	Spermatogenesis family BioT2
PF02785	Biotin carboxylase C-terminal domain
PF00364	Biotin-requiring enzyme
PF13533	Biotin-lipoyl like
PF03744	6-carboxyhexanoate--CoA ligase
PF02632	BioY family
PF06832	Penicillin-Binding Protein C-terminus Family
PF00653	Inhibitor of Apoptosis domain
PF04197	Birnavirus RNA dependent RNA polymerase (VP1)
PF01766	Birnavirus VP2 protein
PF01767	Birnavirus VP3 protein
PF01768	Birnavirus VP4 protein
PF03042	Birnavirus VP5 protein
PF05858	Bovine immunodeficiency virus surface protein (SU)
PF03493	Calcium-activated BK potassium channel alpha subunit
PF07467	Beta-lactamase inhibitor (BLIP)
PF11642	Mite allergen Blo t 5
PF10046	Biogenesis of lysosome-related organelles complex-1 subunit 2
PF12754	Cell-cycle control medial ring component
PF04940	Sensors of blue-light using FAD
PF06375	Bovine leukaemia virus receptor (BLVR)
PF05289	Borrelia hemolysin accessory protein
PF00936	BMC domain
PF15185	Bcl-2-modifying factor, apoptosis
PF04380	Membrane fusogenic activity
PF09132	BmKX
PF02608	Basic membrane protein
PF15282	BMP-2-inducible protein kinase C-terminus
PF12496	Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2
PF06553	BNIP3
PF02012	BNR/Asp-box repeat
PF13088	BNR repeat-like domain
PF13859	BNR repeat-like domain
PF14873	N-terminal domain of BNR-repeat neuraminidase
PF04076	Bacterial OB fold (BOF) protein
PF07441	SigmaK-factor processing regulatory protein BofA
PF08955	BofC C-terminal domain
PF08977	Bypass of Forespore C, N terminal
PF01722	BolA-like protein
PF02044	Bombesin-like peptide
PF05298	Bombinin
PF08096	Bombolitin family
PF04972	BON domain
PF08145	BOP1NT (NUC169) domain
PF15280	Protein aurora borealis N-terminus
PF10512	Cell division cycle-associated protein 8
PF14957	Cdc42 effector
PF05714	Borrelia burgdorferi virulent strain associated lipoprotein
PF06238	Borrelia burgdorferi BBR25 lipoprotein
PF02414	Borrelia ORF-A
PF02999	Borrelia orf-D family
PF04160	Orf-X protein
PF05628	Borrelia membrane protein P13
PF05262	Borrelia P83/100 protein
PF03183	Borrelia repeat protein
PF03978	Borrelia burgdorferi REV protein
PF12298	Eukaryotic mitochondrial regulator protein
PF05588	Clostridium botulinum HA-17 protein
PF00228	Bowman-Birk serine protease inhibitor family
PF08146	BP28CT (NUC211) domain
PF00528	Binding-protein-dependent transport system inner membrane component
PF02653	Branched-chain amino acid transport system / permease component
PF06139	BphX-like
PF08000	Bacterial PH domain
PF03703	Bacterial PH domain
PF14470	Bacterial PH domain
PF06713	Bacterial PH domain
PF10882	Bacterial PH domain
PF10756	Bacterial PH domain
PF02237	Biotin protein ligase C terminal domain
PF03099	Biotin/lipoate A/B protein ligase family
PF09825	Biotin-protein ligase, N terminal
PF08947	BPS (Between PH and SH2)
PF11564	Restriction endonuclease BpuJI - N terminal
PF15516	BpuSI N-terminal domain
PF06753	Bradykinin
PF02485	Core-2/I-Branching enzyme
PF05525	Branched-chain amino acid transport protein
PF07576	BRCA1-associated protein 2
PF13882	Bravo-like intracellular region
PF09169	BRCA2, helical
PF09103	BRCA2, oligonucleotide/oligosaccharide-binding, domain 1
PF09104	BRCA2, oligonucleotide/oligosaccharide-binding, domain 3
PF00634	BRCA2 repeat
PF00533	BRCA1 C Terminus (BRCT) domain
PF12820	Serine-rich domain associated with BRCT
PF06113	Brain and reproductive organ-expressed protein (BRE)
PF08647	BRE1 E3 ubiquitin ligase
PF03032	Brevenin/esculentin/gaegurin/rugosin family
PF07741	Brf1-like TBP-binding domain
PF14965	Negative regulator of p53/TP53
PF04089	BRICHOS domain
PF04427	Brix domain
PF07533	BRK domain
PF09607	Brinker DNA-binding domain
PF02498	BRO family, N-terminal domain
PF03097	BRO1-like domain
PF14961	Broad-minded protein
PF00439	Bromodomain
PF01318	Bromovirus coat protein
PF01573	Bromovirus movement protein
PF07524	Bromodomain associated
PF10104	Di-sulfide bridge nucleocytoplasmic transport domain
PF05244	Brucella outer membrane protein 2
PF08381	Transcription factor regulating root and shoot growth via Pin3
PF13713	Transcription factor BRX N-terminal domain
PF03909	BSD domain
PF07832	Cfr10I/Bse634I restriction endonuclease
PF12280	Brain specific membrane anchored protein
PF04450	Peptidase of plants and bacteria
PF05432	Bone sialoprotein II (BSP-II)
PF08201	BssC/TutF protein
PF13991	BssS protein family
PF06616	BsuBI/PstI restriction endonuclease C-terminus
PF12690	Intracellular proteinase inhibitor
PF03092	BT1 family
PF03704	Bacterial transcriptional activator domain
PF00651	BTB/POZ domain
PF02214	BTB/POZ domain
PF09270	Beta-trefoil DNA-binding domain
PF07742	BTG family
PF00779	BTK motif
PF05232	Bacterial Transmembrane Pair family
PF03437	BtpA family
PF04514	Bluetongue virus non-structural protein NS2
PF09405	CASC3/Barentsz eIF4AIII binding
PF05560	Bacillus thuringiensis P21 molecular chaperone protein
PF09736	Pre-mRNA-splicing factor of RES complex
PF09073	BUD22
PF04426	Bul1 C terminus
PF04425	Bul1 N terminus
PF05307	Bundlin
PF03557	Bunyavirus glycoprotein G1
PF03563	Bunyavirus glycoprotein G2
PF01104	Bunyavirus non-structural protein NS-s
PF03231	Bunyavirus non-structural protein NS-S
PF00952	Bunyavirus nucleocapsid (N) protein
PF04196	Bunyavirus RNA dependent RNA polymerase
PF03181	BURP domain
PF09792	Ubiquitin 3 binding protein But2 C-terminal domain
PF04681	Blastomyces yeast-phase-specific protein
PF05291	Bystin
PF00170	bZIP transcription factor
PF07716	Basic region leucine zipper
PF12498	Basic leucine-zipper C terminal
PF03131	bZIP Maf transcription factor
PF01453	D-mannose binding lectin
PF15617	C-C_Bond_Lyase of the TIM-Barrel fold
PF08782	c-SKI Smad4 binding domain
PF13461	Cell-wall surface anchor repeat
PF07654	Immunoglobulin C1-set domain
PF00386	C1q domain
PF00130	Phorbol esters/diacylglycerol binding domain (C1 domain)
PF03107	C1 domain
PF07649	C1-like domain
PF07975	TFIIH C1-like domain
PF00168	C2 domain
PF05790	Immunoglobulin C2-set domain
PF08205	CD80-like C2-set immunoglobulin domain
PF01413	C-terminal tandem repeated domain in type 4 procollagen
PF06662	D-glucuronyl C5-epimerase C-terminus
PF01681	C6 domain
PF10170	Cysteine-rich domain
PF08742	C8 domain
PF15019	C9orf72-like protein family
PF09678	Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)
PF14159	CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
PF15335	Caspase activity and apoptosis inhibitor 1
PF12515	Ca2+-ATPase N terminal autoinhibitory domain
PF12736	Cell-cycle sustaining, positive selection,
PF15367	Calcium-binding and spermatid-specific protein 1
PF02743	Cache domain
PF08269	Cache domain
PF14827	Sensory domain of two-component sensor kinase
PF09732	Cactus-binding C-terminus of cactin protein
PF10312	Conserved mid region of cactin
PF03596	Cadmium resistance transporter
PF00028	Cadherin domain
PF12733	Cadherin-like beta sandwich domain
PF08266	Cadherin-like
PF01049	Cadherin cytoplasmic region
PF08758	Cadherin prodomain like
PF09232	Caenorhabditis elegans Her-1
PF07440	Caerin 1 protein
PF11600	Chromatin assembly factor 1 complex p150 subunit, N-terminal
PF15512	Chromatin assembly factor complex 1 subunit p60, C-terminal
PF04857	CAF1 family ribonuclease
PF15539	CAF1 complex subunit p150, region binding to CAF1-p60 at C-term
PF15557	CAF1 complex subunit p150, region binding to PCNA
PF12253	Chromatin assembly factor 1 subunit A
PF12265	Histone-binding protein RBBP4 or subunit C of CAF1 complex
PF13117	Cag pathogenicity island protein Cag12
PF03507	CagA exotoxin
PF15066	Cancer-associated gene protein 1 family
PF03135	CagE, TrbE, VirB family, component of type IV transporter system
PF03524	Conjugal transfer protein
PF14585	CagY type 1 repeat
PF07337	DC-EC Repeat
PF09053	CagZ
PF03185	Calcium-activated potassium channel, beta subunit
PF04847	Calcipressin
PF11535	Calcium binding
PF07888	Calcium binding and coiled-coil domain (CALCOCO1) like
PF06387	D1 dopamine receptor-interacting protein (calcyon)
PF00214	Calcitonin / CGRP / IAPP family
PF02029	Caldesmon
PF05042	Caleosin related protein
PF00915	Calicivirus coat protein
PF08435	Calicivirus coat protein C-terminal
PF05752	Calicivirus minor structural protein
PF08405	Viral polyprotein N-terminal
PF07887	Calmodulin binding protein-like
PF01067	Calpain large subunit, domain III
PF00748	Calpain inhibitor
PF00402	Calponin family repeat
PF00262	Calreticulin family
PF05556	Calcineurin-binding protein (Calsarcin)
PF01216	Calsequestrin
PF03160	Calx-beta domain
PF15170	Calcium/calmodulin-dependent protein kinase II inhibitor
PF02888	Calmodulin binding domain
PF08332	Calcium/calmodulin dependent protein kinase II Association
PF14963	Calcium signal-modulating cyclophilin ligand
PF05538	Campylobacter major outer membrane protein
PF07373	CAMP factor (Cfa)
PF07537	CamS sex pheromone cAM373 precursor
PF11971	CAMSAP CH domain
PF08683	Microtubule-binding calmodulin-regulated spectrin-associated
PF10562	Calmodulin-binding domain C0 of NMDA receptor NR1 subunit
PF07839	Plant calmodulin-binding domain
PF05792	Candida agglutinin-like (ALS)
PF11766	Cell-wall agglutinin N-terminal ligand-sugar binding
PF00188	Cysteine-rich secretory protein family
PF15255	WASH complex subunit CAP-Z interacting, central region
PF07918	CAP160 repeat
PF12153	LPS binding domain of CAP18 (C terminal)
PF11735	Cryptococcal mannosyltransferase 1
PF12287	Cytoplasmic activation/proliferation-associated protein-1 C term
PF11729	nodavirus capsid protein
PF04451	Large eukaryotic DNA virus major capsid protein
PF05159	Capsule polysaccharide biosynthesis protein
PF14052	Capsule assembly protein Wzi
PF05704	Capsular polysaccharide synthesis protein
PF14102	Capsule biosynthesis CapC
PF06251	Capsule biosynthesis GfcC
PF14504	CAP-associated N-terminal
PF08603	Adenylate cyclase associated (CAP) C terminal
PF01302	CAP-Gly domain
PF01213	Adenylate cyclase associated (CAP) N terminal
PF11102	Group 4 capsule polysaccharide formation lipoprotein gfcB
PF01039	Carboxyl transferase domain
PF13620	Carboxypeptidase regulatory-like domain
PF02977	Carboxypeptidase A inhibitor
PF05388	Carboxypeptidase Y pro-peptide
PF00194	Eukaryotic-type carbonic anhydrase
PF10645	Carbohydrate binding
PF01256	Carbohydrate kinase
PF08261	Carcinustatin peptide
PF00619	Caspase recruitment domain
PF07705	CARDB
PF02559	CarD-like/TRCF domain
PF01623	Carlavirus putative nucleic acid binding protein
PF11531	Coactivator-associated arginine methyltransferase 1 N terminal
PF08462	Carmovirus coat protein
PF00755	Choline/Carnitine o-acyltransferase
PF09150	Orange carotenoid protein, N-terminal
PF06373	Cocaine and amphetamine regulated transcript protein (CART)
PF07779	10 TM Acyl Transferase domain found in Cas1p
PF09559	Cas6 Crispr
PF12366	Cancer susceptibility candidate 1
PF00363	Casein
PF00997	Kappa casein
PF08172	CASP C terminal
PF14526	Integron-associated effector binding protein
PF10174	RIM-binding protein of the cytomatrix active zone
PF09651	CRISPR-associated protein (Cas_APE2256)
PF09670	CRISPR-associated protein (Cas_Cas02710)
PF01867	CRISPR associated protein Cas1
PF09707	CRISPR-associated protein (Cas_Cas2CT1978)
PF01930	Domain of unknown function DUF83
PF09704	CRISPR-associated protein (Cas_Cas5)
PF01881	CRISPR associated protein Cas6
PF09700	CRISPR-associated protein (Cas_Cmr3)
PF09701	CRISPR-associated protein (Cas_Cmr5)
PF09703	CRISPR-associated protein (Cas_Csa4)
PF09702	CRISPR-associated protein (Cas_Csa5)
PF09709	CRISPR-associated protein (Cas_Csd1)
PF03378	CAS/CSE protein, C-terminus
PF09659	CRISPR-associated protein (Cas_Csm6)
PF09711	CRISPR-associated protein (Cas_Csn2)
PF09620	CRISPR-associated protein (Cas_csx3)
PF09657	CRISPR-associated protein Csx8 (Cas_Csx8)
PF09658	CRISPR-associated protein (Cas_Csx9)
PF09611	CRISPR-associated protein (Cas_Csy1)
PF09614	CRISPR-associated protein (Cas_Csy2)
PF09615	CRISPR-associated protein (Cas_Csy3)
PF09618	CRISPR-associated protein (Cas_Csy4)
PF09344	CT1975-like protein
PF09706	CRISPR-associated protein (Cas_CXXC_CXXC)
PF09455	CRISPR-associated (Cas) DxTHG family
PF09617	CRISPR-associated protein GSU0053 (Cas_GSU0053)
PF09609	CRISPR-associated protein, GSU0054 family (Cas_GSU0054)
PF09623	CRISPR-associated protein NE0113 (Cas_NE0113)
PF09484	CRISPR-associated protein TM1802 (cas_TM1802)
PF09652	Putative CRISPR-associated protein (Cas_VVA1548)
PF00302	Chloramphenicol acetyltransferase
PF00199	Catalase
PF06628	Catalase-related immune-responsive
PF00666	Cathelicidin
PF08773	Cathepsin C exclusion domain
PF00689	Cation transporting ATPase, C-terminus
PF00690	Cation transporter/ATPase, N-terminus
PF01545	Cation efflux family
PF15149	Cation channel sperm-associated protein subunit beta protein family
PF15020	Cation channel sperm-associated protein subunit delta
PF15064	Cation channel sperm-associated protein subunit gamma
PF03123	CAT RNA binding domain
PF04731	Caudal like protein activation region
PF02413	Caudovirales tail fibre assembly protein
PF03233	Aphid transmission protein
PF03310	Caulimovirus DNA-binding protein
PF01693	Caulimovirus viroplasmin
PF01146	Caveolin
PF04771	Chicken anaemia virus VP-3 protein
PF08763	Voltage gated calcium channel IQ domain
PF14798	Calcium homeostasis modulator
PF02275	Linear amide C-N hydrolases, choloylglycine hydrolase family
PF08406	CbbQ/NirQ/NorQ C-terminal
PF03914	CBF/Mak21 family
PF02045	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
PF00808	Histone-like transcription factor (CBF/NF-Y) and archaeal histone
PF08143	CBFNT (NUC161) domain
PF02312	Core binding factor beta subunit
PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
PF02570	Precorrin-8X methylmutase
PF01888	CbiD
PF01890	Cobalamin synthesis G C-terminus
PF11761	Cobalamin biosynthesis central region
PF11760	Cobalamin synthesis G N-terminal
PF02571	Precorrin-6x reductase CbiJ/CobK
PF06180	Cobalt chelatase (CbiK)
PF01891	Cobalt uptake substrate-specific transmembrane region
PF02553	Cobalt transport protein component CbiN
PF02361	Cobalt transport protein
PF01903	CbiX
PF01955	Adenosylcobinamide amidohydrolase
PF07434	CblD like pilus biogenesis initiator
PF02262	CBL proto-oncogene N-terminal domain 1
PF02761	CBL proto-oncogene N-terminus, EF hand-like domain
PF02762	CBL proto-oncogene N-terminus, SH2-like domain
PF14683	Polysaccharide lyase family 4, domain III
PF09212	Carbohydrate binding module 27
PF09478	Carbohydrate binding domain CBM49
PF00734	Fungal cellulose binding domain
PF02013	Cellulose or protein binding domain
PF03425	Carbohydrate binding domain (family 11)
PF01607	Chitin binding Peritrophin-A domain
PF03426	Carbohydrate binding domain (family 15)
PF03424	Carbohydrate binding domain (family 17/28)
PF03427	Carbohydrate binding domain (family 19)
PF00553	Cellulose binding domain
PF00686	Starch binding domain
PF03370	Putative phosphatase regulatory subunit
PF03423	Carbohydrate binding domain (family 25)
PF00942	Cellulose binding domain
PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
PF02018	Carbohydrate binding domain
PF02839	Carbohydrate binding domain
PF14600	Cellulose-binding domain
PF03422	Carbohydrate binding module (family 6)
PF06204	Putative carbohydrate binding domain
PF03442	Carbohydrate binding domain X2
PF12192	Fungal calcium binding protein
PF07960	CBP4
PF00571	CBS domain
PF09490	Probable cobalt transporter subunit (CbtA)
PF09489	Probable cobalt transporter subunit (CbtB)
PF04942	CC domain
PF15625	CC2D2A N-terminal C2 domain
PF11105	Arthropod cardioacceleratory peptide 2a
PF07860	WisP family C-Terminal Region
PF07362	Post-segregation antitoxin CcdA
PF01845	CcdB protein
PF15188	Coiled-coil domain-containing protein 167
PF15254	Coiled-coil domain-containing protein 14
PF14923	Coiled-coil protein 142
PF14915	CCDC144C protein coiled-coil region
PF14662	Coiled-coil region of CCDC155
PF14989	Coiled-coil domain containing 32
PF15295	Coiled-coil domain-containing protein 50  N-terminus
PF15236	Coiled-coil domain-containing protein 66
PF15374	Coiled-coil domain-containing protein 71L
PF14917	Coiled coil protein 74, C terminal
PF14968	Coiled coil protein 84
PF14916	Coiled-coil domain of unknown function
PF15482	Coiled-coil domain-containing glutamate-rich protein family 1
PF02754	Cysteine-rich domain
PF03379	CcmB protein
PF04995	Heme exporter protein D (CcmD)
PF03100	CcmE
PF03918	Cytochrome C biogenesis protein
PF03597	Cytochrome oxidase maturation protein cbb3-type
PF03150	Di-haem cytochrome c peroxidase
PF15013	CCSMST1 family
PF06203	CCT motif
PF09425	Divergent CCT motif
PF04103	CD20-like family
PF14984	CD24 protein
PF06365	CD34/Podocalyxin family
PF01130	CD36 family
PF09191	CD4, extracellular
PF12567	Leukocyte receptor CD45
PF04549	CD47 transmembrane region
PF15116	CAMPATH-1 antigen
PF12301	CD99 antigen like protein 2
PF08045	Cell division control protein 14, SIN component
PF06395	CDC24 Calponin
PF09507	DNA polymerase subunit Cdc27
PF08564	Cdc37 C terminal domain
PF08565	Cdc37 Hsp90 binding domain
PF03234	Cdc37 N terminal kinase binding
PF02724	CDC45-like protein
PF02933	Cell division protein 48 (CDC48), domain 2
PF02359	Cell division protein 48 (CDC48), N-terminal domain
PF03381	LEM3 (ligand-effect modulator 3) family / CDC50 family
PF09079	CDC6, C terminal
PF05179	RNA pol II accessory factor, Cdc73 family
PF10563	Cadmium carbonic anhydrase repeat
PF11731	Pathogenicity locus
PF02611	CDP-diacylglycerol pyrophosphatase
PF03598	CO dehydrogenase/acetyl-CoA synthase complex beta subunit
PF03599	CO dehydrogenase/acetyl-CoA synthase delta subunit
PF02234	Cyclin-dependent kinase inhibitor
PF09806	Cyclin-dependent kinase 2-associated protein
PF03261	Cyclin-dependent kinase 5 activator protein
PF05706	Cyclin-dependent kinase inhibitor 3 (CDKN3)
PF05995	Cysteine dioxygenase type I
PF01066	CDP-alcohol phosphatidyltransferase
PF08009	CDP-alcohol phosphatidyltransferase 2
PF05174	Cysteine-rich D. radiodurans N terminus
PF15213	CMT1A duplicated region transcript 4 protein
PF08839	DNA replication factor CDT1 like
PF03498	Cytolethal distending toxin A/C family
PF15359	Carnitine deficiency-associated protein 3
PF14997	CECR6/TMEM121 family
PF00272	Cecropin family
PF10729	Cell division activator CedA
PF12662	Complement Clr-like EGF-like
PF02927	N-terminal ig-like domain of cellulase
PF03500	Cellulose synthase subunit D
PF00150	Cellulase (glycosyl hydrolase family 5)
PF12876	Sugar-binding cellulase-like
PF03552	Cellulose synthase
PF03040	CemA family
PF10511	Trappin protein transglutaminase binding domain
PF09026	Centromere protein B dimerisation domain
PF04218	CENP-B N-terminal DNA-binding domain
PF11699	Mif2/CENP-C like
PF15620	Centromere assembly component CENP-C middle DNMT3B-binding region
PF10490	Rb-binding domain of kinetochore protein Cenp-F/LEK1
PF10473	Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
PF10481	Cenp-F N-terminal domain
PF05837	Centromere protein H (CENP-H)
PF07778	Mis6
PF11802	Centromere-associated protein K
PF13092	Kinetochore complex Sim4 subunit Fta1
PF11111	Centromere protein M (CENP-M)
PF05238	Kinetochore protein CHL4 like
PF09496	Cenp-O kinetochore centromere component
PF13096	CENP-A-nucleosome distal (CAD) centromere subunit, CENP-P
PF13094	CENP-Q, a CENPA-CAD centromere complex subunit
PF06729	Kinetochore component, CENP-R
PF15630	Kinetochore component CENP-S
PF15511	Centromere kinetochore component CENP-T
PF13097	CENP-A nucleosome associated complex (NAC) subunit
PF15510	Centromere kinetochore component W
PF09415	CENP-S associating Centromere protein X
PF15622	Kinetochore assembly subunit CENP-C N-terminal
PF09287	CEP-1, DNA binding
PF15308	CEP170 C-terminus
PF14933	CEP19-like protein
PF15007	Centrosomal spindle body, CEP44
PF14073	Centrosome localisation domain of Cep57
PF14197	Centrosome localisation domain of PPC89
PF06657	Centrosome microtubule-binding domain of Cep57
PF15627	CEP76 C2 domain
PF05875	Ceramidase
PF04734	Neutral/alkaline non-lysosomal ceramidase
PF07249	Cerato-platanin
PF11439	Type III secretion system filament chaperone CesA
PF05932	Tir chaperone protein (CesT) family
PF05264	Choristoneura fumiferana antifreeze protein (CfAFP)
PF09443	Cripto_Frl-1_Cryptic (CFC)
PF05730	CFEM domain
PF11526	Subunit of cleavage factor IA Pcf11
PF14396	Cystic fibrosis TM conductance regulator (CFTR), regulator domain
PF03859	CG-1 domain
PF10233	Uncharacterized conserved protein CG6151-P
PF08821	CGGC domain
PF08617	Kinase binding protein CGI-121
PF03879	Cgr1 family
PF06306	Beta-1,4-N-acetylgalactosaminyltransferase (CgtA)
PF00307	Calponin homology (CH) domain
PF06150	ChaB
PF04752	ChaC-like protein
PF05235	CHAD domain
PF02431	Chalcone-flavanone isomerase
PF02797	Chalcone and stilbene synthases, C-terminal domain
PF00195	Chalcone and stilbene synthases, N-terminal domain
PF03502	Nucleoside-specific channel-forming protein, Tsx
PF05257	CHAP domain
PF10448	20S proteasome chaperone
PF07824	Type III secretion chaperone domain
PF09295	ChAPs (Chs5p-Arf1p-binding proteins)
PF03924	CHASE domain
PF05226	CHASE2 domain
PF05227	CHASE3 domain
PF05228	CHASE4 domain
PF12770	CHAT domain
PF03173	Putative carbohydrate binding domain
PF03174	Chitobiase/beta-hexosaminidase C-terminal domain
PF13290	Chitobiase/beta-hexosaminidase C-terminal domain
PF06747	CHCH domain
PF04420	CHD5-like protein
PF08074	CHDCT2 (NUC038) domain
PF08073	CHDNT (NUC034) domain
PF01339	CheB methylesterase
PF04509	CheC-like family
PF03975	CheD chemotactic sensory transduction
PF04283	Chemotaxis signal transduction system protein F from archaea
PF01739	CheR methyltransferase, SAM binding domain
PF03705	CheR methyltransferase, all-alpha domain
PF01584	CheW-like domain
PF13690	Chemotaxis phosphatase CheX
PF09078	CheY binding
PF04344	Chemotaxis phosphatase, CheZ
PF05679	Chondroitin N-acetylgalactosaminyltransferase
PF14645	Chibby family
PF06483	Chitinase C
PF11434	Chemotaxis-inhibiting protein CHIPS
PF15355	Stretch-responsive small skeletal muscle X protein, Chisel
PF08329	Chitinase A, N-terminal domain
PF00187	Chitin recognition protein
PF03067	Chitin binding domain
PF00379	Insect cuticle protein
PF01644	Chitin synthase
PF08407	Chitin synthase N-terminal
PF03142	Chitin synthase
PF07548	Chlamydia polymorphic membrane protein middle domain
PF09675	Chlamydia-phage Chp2 scaffold (Chlamy_scaf)
PF01308	Chlamydia major outer membrane protein
PF03503	Chlamydia cysteine-rich outer membrane protein 3
PF03504	Chlamydia cysteine-rich outer membrane protein 6
PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
PF05475	Chlamydia virulence protein PGP3-D
PF13541	Subunit ChlI of Mg-chelatase
PF00504	Chlorophyll A-B binding protein
PF07224	Chlorophyllase
PF12740	Chlorophyllase enzyme
PF14476	Petal formation-expressed
PF11098	Chlorosome envelope protein C
PF06598	Chlorovirus glycoprotein repeat
PF06778	Chlorite dismutase
PF02962	5-carboxymethyl-2-hydroxymuconate isomerase
PF09193	Cholecystokinin A receptor, N-terminal
PF01633	Choline/ethanolamine kinase
PF04428	Choline kinase N terminus
PF12411	Choline sulfatase enzyme C terminal
PF04515	Plasma-membrane choline transporter
PF09129	Cholesterol oxidase, substrate-binding
PF14592	Chondroitinase B
PF06566	Chondroitin sulphate attachment domain
PF04968	CHORD
PF05961	Chordopoxvirus A13L protein
PF05846	Chordopoxvirus A15 protein
PF05941	Chordopoxvirus A20R protein
PF06015	Chordopoxvirus A30L protein
PF05966	Chordopoxvirus A33R protein
PF05989	Chordopoxvirus A35R protein
PF06138	Chordopoxvirus E11 protein
PF05796	Chordopoxvirus protein G2
PF06129	Chordopoxvirus G3 protein
PF05803	Chordopoxvirus L2 protein
PF05864	Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7)
PF12624	N-terminal region of Chorein, a TM vesicle-mediated sorter
PF01723	Chorion protein
PF03964	Chorion family 2
PF05387	Chorion family 3
PF05836	Chorion protein S16
PF00425	chorismate binding enzyme
PF01264	Chorismate synthase
PF04345	Chorismate lyase
PF10216	CO2 hydration protein (ChpXY)
PF07452	CHRD domain
PF05535	Chromadorea ALT protein
PF02417	Chromate transporter
PF09828	Chromate resistance exported protein
PF00385	Chromo (CHRromatin Organisation MOdifier) domain
PF13889	Chromosome segregation during meiosis
PF01393	Chromo shadow domain
PF12271	Chitin synthase III catalytic subunit
PF06573	Churchill protein
PF06228	Haem utilisation ChuX/HutX
PF13585	C-terminal domain of CHU protein family
PF07538	Clostridial hydrophobic W
PF09649	Histone chaperone domain CHZ
PF07347	NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)
PF08547	Complex I intermediate-associated protein 30 (CIA30)
PF05093	Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis
PF09774	Caffeine-induced death protein 2
PF02017	CIDE-N domain
PF08134	cIII protein family
PF00878	Cation-independent mannose-6-phosphate receptor repeat
PF02464	Competence-damaged protein
PF02443	Circovirus capsid protein
PF06022	Plasmodium variant antigen protein Cir/Yir/Bir
PF10197	N-terminal domain of CBF1 interacting co-repressor CIR
PF04487	CITED
PF04223	Citrate lyase, alpha subunit (CitF)
PF01874	ATP:dephospho-CoA triphosphoribosyl transferase
PF03600	Citrate transporter
PF08218	Citrate lyase ligase C-terminal domain
PF00285	Citrate synthase
PF05520	Citrus tristeza virus P18 protein
PF12431	Transcriptional regulator
PF03802	Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
PF12605	Casein kinase 1 gamma C terminal
PF15011	Casein Kinase 2 substrate
PF15297	Cytoskeleton-associated protein 2 C-terminus
PF01111	Cyclin-dependent kinase regulatory subunit
PF01214	Casein kinase II regulatory subunit
PF03805	Cytoadherence-linked asexual protein
PF14769	Flagellar C1a complex subunit C1a-32
PF12348	CLASP N terminal
PF04021	Class III signal peptide
PF00637	Region in Clathrin and VPS
PF09268	Clathrin, heavy-chain linker
PF15045	Clathrin-binding box of Aftiphilin, vesicle trafficking
PF13838	Clathrin-H-link
PF01086	Clathrin light chain
PF01394	Clathrin propeller repeat
PF01217	Clathrin adaptor complex small chain
PF13903	PMP-22/EMP/MP20/Claudin tight junction
PF06653	Tight junction protein, Claudin-like
PF05452	Clavanin
PF07062	Clc-like
PF08434	Calcium-activated chloride channel
PF07675	Cleaved Adhesin Domain
PF03505	Clostridium enterotoxin
PF12032	Regulatory CLIP domain of proteinases
PF02487	CLN3 protein
PF15014	Ceroid-lipofuscinosis neuronal protein 5
PF15156	Ceroid-lipofuscinosis neuronal protein 6
PF03515	Colicin-like bacteriocin tRNase domain
PF03513	Cloacin immunity protein
PF01785	Closterovirus coat protein
PF06597	Clostridium P-47 protein
PF06807	Pre-mRNA cleavage complex II protein Clp1
PF10431	C-terminal, D2-small domain, of ClpB protein
PF02617	ATP-dependent Clp protease adaptor protein ClpS
PF05602	Cleft lip and palate transmembrane protein 1 (CLPTM1)
PF02861	Clp amino terminal domain
PF00574	Clp protease
PF10383	Transcription-silencing protein Clr2
PF14420	Clr5 domain
PF10607	CTLH/CRA C-terminal to LisH motif domain
PF13236	Clustered mitochondria
PF10234	Clusterin-associated protein-1
PF01093	Clusterin
PF15044	Mitochondrial function, CLU-N-term
PF03026	Influenza C virus M1 protein
PF03021	Influenza C virus M2 protein
PF02353	Mycolic acid cyclopropane synthetase
PF08583	Cytochrome c oxidase biogenesis protein Cmc1 like
PF02543	Carbamoyltransferase
PF04989	Cephalosporin hydroxylase
PF02627	Carboxymuconolactone decarboxylase family
PF14617	U3-containing 90S pre-ribosomal complex subunit
PF12467	Cucumber mosaic virus 1a protein family
PF12503	Cucumber mosaic virus 1a protein C terminal
PF08001	CMV US
PF09316	C-myb, C-terminal
PF07736	Chorismate mutase type I
PF01817	Chorismate mutase type II
PF08077	Chloramphenicol resistance gene leader peptide
PF05738	Cna protein B-type domain
PF12717	non-SMC mitotic condensation complex subunit 1
PF12922	non-SMC mitotic condensation complex subunit 1, N-term
PF05786	Condensin complex subunit 2
PF12719	Nuclear condensing complex subunits, C-term domain
PF05785	Rho-activating domain of cytotoxic necrotizing factor
PF00780	CNH domain
PF09447	Cnl2/NKP2 family protein
PF00027	Cyclic nucleotide-binding domain
PF08750	CNP1-like family
PF05881	2',3'-cyclic nucleotide 3'-phosphodiesterase (CNP or CNPase)
PF15043	CB1 cannabinoid receptor-interacting protein 1
PF01110	Ciliary neurotrophic factor
PF00795	Carbon-nitrogen hydrolase
PF08695	Cytochrome oxidase complex assembly protein 1
PF01121	Dephospho-CoA kinase
PF08764	Staphylococcus aureus coagulase
PF02035	Coagulin
PF07718	Coatomer beta C-terminal region
PF10389	Bacteriophage coat protein B
PF14806	Coatomer beta subunit appendage platform
PF04733	Coatomer epsilon subunit
PF04053	Coatomer WD associated region
PF07875	Coat F domain
PF07552	Spore Coat Protein X and V domain
PF02629	CoA binding domain
PF13380	CoA binding domain
PF13727	CoA-binding domain
PF01144	Coenzyme A transferase
PF02515	CoA-transferase family III
PF01122	Eukaryotic cobalamin-binding protein
PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
PF03186	CobD/Cbib protein
PF09469	Cordon-bleu ubiquitin-like domain
PF02514	CobN/Magnesium Chelatase
PF04833	COBRA-like protein
PF06209	Cofactor of BRCA1 (COBRA1)
PF02654	Cobalamin-5-phosphate synthase
PF12556	Cobaltochelatase CobS subunit N terminal
PF06213	Cobalamin biosynthesis protein CobT
PF11775	Cobalamin biosynthesis protein CobT VWA domain
PF02283	Cobinamide kinase / cobinamide phosphate guanyltransferase
PF02492	CobW/HypB/UreG, nucleotide-binding domain
PF07683	Cobalamin synthesis protein cobW C-terminal domain
PF01923	Cobalamin adenosyltransferase
PF15296	Codanin-1 C-terminus
PF06018	CodY GAF-like domain
PF00135	Carboxylesterase family
PF01983	Guanylyl transferase CofC like
PF00241	Cofilin/tropomyosin-type actin-binding protein
PF06148	COG (conserved oligomeric Golgi) complex component, COG2
PF08318	COG4 transport protein
PF10392	Golgi transport complex subunit 5
PF06419	Conserved oligomeric complex COG6
PF10191	Golgi complex component 7 (COG7)
PF00963	Cohesin domain
PF12765	HEAT repeat associated with sister chromatid cohesion
PF10345	Cohesin loading factor
PF06054	Competence protein CoiA-like family
PF05710	Coiled coil
PF09813	Coiled-coil domain-containing protein 56
PF06286	Coleoptericin
PF01410	Fibrillar collagen C-terminal domain
PF01024	Colicin pore forming domain
PF12639	DNase/tRNase domain of colicin-like bacteriocin
PF12106	Colicin C terminal ribonuclease domain
PF11429	Colicin D
PF11504	Colicin Ia
PF03857	Colicin immunity protein
PF09204	Bacterial self-protective colicin-like immunity
PF14859	Colicin M
PF01320	Colicin immunity protein / pyocin immunity protein
PF02674	Colicin V production protein
PF01114	Colipase, N-terminal domain
PF15083	Colipase-like
PF02740	Colipase, C-terminal domain
PF01391	Collagen triple helix repeat (20 copies)
PF05737	Collagen binding domain
PF12904	Putative collagen-binding domain of a collagenase
PF07484	Phage Tail Collar Domain
PF01484	Nematode cuticle collagen N-terminal domain
PF02679	(2R)-phospho-3-sulfolactate synthase (ComA)
PF03047	COMC family
PF10719	Late competence development protein ComFB
PF14173	ComG operon protein 7
PF11033	Competence protein J (ComJ)
PF06338	ComK protein
PF02247	Large coat protein
PF02248	Small coat protein
PF11598	Cartilage oligomeric matrix protein
PF05205	COMPASS (Complex proteins associated with Set1p) component shg1
PF03772	Competence protein
PF11546	Staphylococcal complement inhibitor SCIN
PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
PF05347	Complex 1 protein (LYR family)
PF13232	Complex1_LYR-like
PF13233	Complex1_LYR-like
PF05952	Bacillus competence pheromone ComX
PF10815	ComZ
PF10346	Conidiation protein 6
PF00668	Condensation domain
PF12422	Condensin II non structural maintenance of chromosomes subunit
PF00029	Connexin
PF03508	Gap junction alpha-1 protein (Cx43)
PF03509	Gap junction alpha-8 protein (Cx50)
PF10582	Gap junction channel protein cysteine-rich domain
PF02950	Conotoxin
PF15281	Consortin C-terminus
PF03601	Conserved hypothetical protein 698
PF03602	Conserved hypothetical protein 95
PF14395	Phage phiEco32-like COOH.NH2 ligase-type 2
PF08752	Coatomer gamma subunit appendage platform subdomain
PF14218	Circadian oscillating protein COP23
PF05275	Copper resistance protein B precursor (CopB)
PF04234	CopC domain
PF05425	Copper resistance protein D
PF07970	Endoplasmic reticulum vesicle transporter
PF07002	Copine
PF08507	COPI associated protein
PF06957	Coatomer (COPI) alpha subunit C-terminus
PF11525	Copper resistance protein K
PF00127	Copper binding proteins, plastocyanin/azurin family
PF00649	Copper fist DNA binding domain
PF15340	Cooperator of PRMT5 family
PF01218	Coproporphyrinogen III oxidase
PF05019	Coenzyme Q (ubiquinone) biosynthesis protein Coq4
PF03232	Ubiquinone biosynthesis protein COQ7
PF08511	COQ9
PF04803	Cor1/Xlr/Xmr conserved region
PF01544	CorA-like Mg2+ transporter protein
PF03471	Transporter associated domain
PF03311	Cornichon protein
PF02389	Cornifin (SPRR) family
PF05528	Coronavirus gene 5 protein
PF04694	Coronavirus ORF3 protein
PF06336	Coronavirus 5a protein
PF03262	Coronavirus 6B/7B protein
PF02398	Coronavirus protein 7
PF03187	Corona nucleocapsid I protein
PF01635	Coronavirus M matrix/glycoprotein
PF06145	Coronavirus nonstructural protein NS1
PF04753	Coronavirus non-structural protein NS2
PF05213	Coronavirus NS2A protein
PF03053	ORF3b coronavirus protein
PF03905	Coronavirus non-structural protein NS4
PF12093	Coronavirus NS8 protein
PF00937	Coronavirus nucleocapsid protein
PF06478	Coronavirus RPol N-terminus
PF01600	Coronavirus S1 glycoprotein
PF01601	Coronavirus S2 glycoprotein
PF09727	Cortactin-binding protein-2
PF09304	Cortexillin I, coiled coil
PF11057	Cortexin of kidney
PF14705	Costars
PF10628	Outer spore coat protein E (CotE)
PF08757	CotH protein
PF11007	Spore coat associated protein JA (CotJA)
PF12652	CotJB protein
PF13657	HipA N-terminal domain
PF00115	Cytochrome C and Quinol oxidase polypeptide I
PF14880	Cytochrome oxidase c assembly
PF02628	Cytochrome oxidase assembly protein
PF14138	Cytochrome c oxidase assembly protein COX16
PF05051	Cytochrome C oxidase copper chaperone (COX17)
PF00116	Cytochrome C oxidase subunit II, periplasmic domain
PF09125	Cytochrome C oxidase subunit II, transmembrane
PF02790	Cytochrome C oxidase subunit II, transmembrane domain
PF00510	Cytochrome c oxidase subunit III
PF02936	Cytochrome c oxidase subunit IV
PF03626	Prokaryotic Cytochrome C oxidase subunit IV
PF07835	Bacterial aa3 type cytochrome c oxidase subunit IV
PF02284	Cytochrome c oxidase subunit Va
PF01215	Cytochrome c oxidase subunit Vb
PF02046	Cytochrome c oxidase subunit VIa
PF02297	Cytochrome oxidase c subunit VIb
PF02937	Cytochrome c oxidase subunit VIc
PF02238	Cytochrome c oxidase subunit VIIa
PF05392	Cytochrome C oxidase chain VIIB
PF02935	Cytochrome c oxidase subunit VIIc
PF02285	Cytochrome oxidase c subunit VIII
PF06240	Carbon monoxide dehydrogenase subunit G (CoxG)
PF08113	Cytochrome c oxidase subunit IIa family
PF06481	COX Aromatic Rich Motif
PF12557	Cob(I)alamin adenosyltransferase N terminal
PF03450	CO dehydrogenase flavoprotein C-terminal domain
PF02552	CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
PF02672	CP12 domain
PF04516	CP2 transcription factor
PF01383	CpcD/allophycocyanin linker domain
PF07823	Cyclic phosphodiesterase-like protein
PF09367	CpeS-like protein
PF06206	CpeT/CpcT family (DUF1001)
PF15481	Chondroitin proteoglycan 4
PF08144	CPL (NUC119) domain
PF08230	Cpl-7 lysozyme C-terminal domain
PF00166	Chaperonin 10 Kd subunit
PF00118	TCP-1/cpn60 chaperonin family
PF14507	CppA C-terminal
PF14506	CppA N-terminal
PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
PF13299	Cleavage and polyadenylation factor 2 C-terminal
PF11718	Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term
PF03178	CPSF A subunit region
PF07931	Chloramphenicol phosphotransferase-like protein
PF09717	Plasmodium falciparum domain of unknown function (CPW_WPC)
PF14353	CpXC protein
PF04174	A circularly permuted ATPgrasp
PF14403	Circularly permuted ATP-grasp type 2
PF10147	Growth arrest and DNA-damage-inducible proteins-interacting protein 1
PF06589	Circumsporozoite-related antigen (CRA)
PF00650	CRAL/TRIO domain
PF13716	Divergent CRAL/TRIO domain
PF03765	CRAL/TRIO, N-terminal domain
PF07016	Cysteine-rich acidic integral membrane protein precursor
PF07046	Cytoplasmic repetitive antigen (CRA) like repeat
PF02537	CrcB-like protein
PF08624	Chromatin remodelling complex Rsc7/Swp82 subunit
PF05981	CreA protein
PF01321	Creatinase/Prolidase N-terminal domain
PF02633	Creatinine amidohydrolase
PF09030	Creb binding
PF06123	Inner membrane protein CreD
PF11520	Chromatin protein Cren7
PF10472	eIF2-alpha phosphatase phosphorylation constitutive repressor
PF00473	Corticotropin-releasing factor family
PF05428	Corticotropin-releasing factor binding protein (CRF-BP)
PF10380	Transcription factor CRF1
PF10534	Connector enhancer of kinase suppressor of ras
PF07416	Crinivirus P26 protein
PF10235	Microtubule-associated protein CRIPT
PF08562	Crisp
PF08798	CRISPR associated protein
PF09827	CRISPR associated protein Cas2
PF09481	CRISPR-associated protein Cse1 (CRISPR_cse1)
PF09485	CRISPR-associated protein Cse2 (CRISPR_cse2)
PF07417	Transcriptional regulator Crl
PF08767	CRM1 C terminal
PF09048	Cro
PF00325	Bacterial regulatory proteins, crp family
PF05745	Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA)
PF08762	CRPV capsid protein like
PF01985	CRS1 / YhbY (CRM) domain
PF08627	CRT-like
PF08728	CRT10
PF07143	Hydroxyneurosporene synthase (CrtC)
PF01147	Crustacean CHH/MIH/GIH neurohormone family
PF03858	Crustacean neurohormone H
PF07029	CryBP1 protein
PF12546	Blue/Ultraviolet sensing protein C terminal
PF00030	Beta/Gamma crystallin
PF00525	Alpha crystallin A chain, N terminal
PF09076	Beta/Gamma crystallin
PF08964	Beta/Gamma crystallin
PF04969	CS domain
PF05532	CsbD-like
PF00313	'Cold-shock' DNA-binding domain
PF08506	Cse1
PF05337	Macrophage colony stimulating factor-1 (CSF-1)
PF10627	Curli assembly protein CsgE
PF10614	Type VIII secretion system (T8SS), CsgF protein
PF03783	Curli production assembly/transport component CsgG
PF08943	CsiD
PF12539	Chromosome segregation protein Csm1/Pcs1
PF12288	Carboxysome shell peptide mid-region
PF08936	Carboxysome Shell Carbonic Anhydrase
PF02599	Global regulator protein family
PF12792	CSS motif domain associated with EAL
PF06002	Alpha-2,3-sialyltransferase (CST-I)
PF02554	Carbon starvation protein CstA
PF14327	Hinge domain of cleavage stimulation factor subunit 2
PF14304	Transcription termination and cleavage factor C-terminal
PF15623	Cancer/testis gene family 47
PF04442	Cytochrome c oxidase assembly protein CtaG/Cox11
PF15489	CST, telomere maintenance, complex subunit CTC1
PF15491	CST, telomere maintenance, complex subunit CTC1
PF12815	Spt5 C-terminal nonapeptide repeat binding Spt4
PF01556	DnaJ C terminal domain
PF04818	RNA polymerase II-binding domain.
PF09696	Ctf8
PF00859	CTF/NF-I family transcription modulation region
PF06934	Fatty acid cis/trans isomerase (CTI)
PF10482	Tumour-suppressor protein CtIP N-terminal domain
PF12243	CTD kinase subunit gamma CTK3
PF12350	CTD kinase subunit gamma CTK3 C-terminus
PF07863	Homologues of TraJ from Bacteroides conjugative transposon
PF08347	N-terminal CTNNB1 binding
PF08216	Catenin-beta-like, Arm-motif containing nuclear
PF01982	Domain of unknown function DUF120
PF06418	CTP synthase N-terminus
PF01148	Cytidylyltransferase family
PF01467	Cytidylyltransferase
PF02348	Cytidylyltransferase
PF04145	Ctr copper transporter family
PF05848	Firmicute transcriptional repressor of class III stress genes (CtsR)
PF06922	Citrus tristeza virus P13 protein
PF04808	Citrus tristeza virus (CTV) P23 protein
PF07184	Citrus tristeza virus P33 protein
PF06706	Citrus tristeza virus 6-kDa protein
PF07459	CTX phage RstB protein
PF11617	Protein metal binding site
PF00394	Multicopper oxidase
PF07731	Multicopper oxidase
PF07732	Multicopper oxidase
PF02578	Multi-copper polyphenol oxidoreductase laccase
PF01082	Copper type II ascorbate-dependent monooxygenase, N-terminal domain
PF03712	Copper type II ascorbate-dependent monooxygenase, C-terminal domain
PF00431	CUB domain
PF02408	CUB-like domain
PF03263	Cucumovirus protein 2B
PF00760	Cucumovirus coat protein
PF02845	CUE domain
PF11515	Mouse development and cellular proliferation protein Cullin-7
PF00888	Cullin family
PF03556	Cullin binding
PF10557	Cullin protein neddylation domain
PF00190	Cupin
PF07883	Cupin domain
PF05899	Protein of unknown function (DUF861)
PF08007	Cupin superfamily protein
PF06172	Cupin superfamily (DUF985)
PF12852	Cupin
PF12973	ChrR Cupin-like domain
PF13621	Cupin-like domain
PF13473	Cupredoxin-like domain
PF07012	Curlin associated repeat
PF07325	Curtovirus V2 protein
PF07436	Curtovirus V3 protein
PF11604	Copper binding periplasmic protein CusF
PF02376	CUT domain
PF11500	Spindle pole body formation-associated protein
PF08559	Cut8 six-helix bundle
PF14483	Cut8 dimerisation domain
PF14482	Cut8 proteasome-binding domain
PF03091	CutA1 divalent ion tolerance protein
PF03932	CutC family
PF08140	Crustacean cuticle protein repeat
PF08184	Cuticle protein 7 isoform family
PF11018	Pupal cuticle protein C1
PF01083	Cutinase
PF01179	Copper amine oxidase, enzyme domain
PF07833	Copper amine oxidase N-terminal domain
PF02727	Copper amine oxidase, N2 domain
PF02728	Copper amine oxidase, N3 domain
PF02298	Plastocyanin-like domain
PF08881	CVNH domain
PF12542	Pre-mRNA splicing factor
PF08315	cwf18 pre-mRNA splicing factor
PF08312	cwf21 domain
PF04677	Protein similar to CwfJ C-terminus 1
PF04676	Protein similar to CwfJ C-terminus 2
PF04889	Cwf15/Cwc15 cell cycle control protein
PF01473	Putative cell wall binding repeat
PF04122	Putative cell wall binding repeat 2
PF01705	CX module
PF15211	VEGF co-regulated chemokine 1
PF12109	CXCR4 Chemokine receptor N terminal
PF03128	CXCXC repeat
PF03692	Putative zinc- or iron-chelating domain
PF02560	Cyanate lyase C-terminal domain
PF05328	CybS
PF10438	Cyclo-malto-dextrinase C-terminal domain
PF09087	Cyclomaltodextrinase, N-terminal
PF04199	Putative cyclase
PF04673	Polyketide synthesis cyclase
PF08613	Cyclin
PF02984	Cyclin, C-terminal domain
PF00134	Cyclin, N-terminal domain
PF04126	Cyclophilin-like
PF03784	Cyclotide family
PF09600	Cyd operon protein YbgE (Cyd_oper_YbgE)
PF15241	Cylicin N-terminus
PF05865	Cypovirus polyhedrin protein
PF10414	Sirohaem synthase dimerisation region
PF00031	Cystatin domain
PF12734	Cysteine-rich TM module stress tolerance
PF00007	Cystine-knot domain
PF01053	Cys/Met metabolism PLP-dependent enzyme
PF14206	Cysteine-rich CPCC
PF14255	Cysteine-rich CPXCG
PF14375	Cysteine-rich CWC
PF00839	Cysteine rich repeat
PF14205	Cysteine-rich KTR
PF14194	Cysteine-rich VLP
PF00173	Cytochrome b5-like Heme/Steroid binding domain
PF12378	Trypsin-sensitive surface-exposed protein
PF07271	Cytadhesin P30/P32
PF08802	Cytochrome B6-F complex Fe-S subunit
PF01928	CYTH domain
PF02224	Cytidylate kinase
PF13189	Cytidylate kinase-like family
PF15153	Cytokine-like protein 1
PF09786	Cytochrome B561, N terminal
PF10643	Photosystem P840 reaction-centre cytochrome c-551
PF13435	Cytochrome c554 and c-prime
PF14522	Cytochrome c7
PF11783	Cytochrome c bacterial
PF13442	Cytochrome C oxidase, cbb3-type, subunit III
PF05038	Cytochrome Cytochrome b558 alpha-subunit
PF00283	Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits
PF00284	Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit
PF03188	Eukaryotic cytochrome b561
PF07361	Cytochrome b562
PF00032	Cytochrome b(C-terminal)/b6/petD
PF00033	Cytochrome b(N-terminal)/b6/petB
PF13631	Cytochrome b(N-terminal)/b6/petB
PF00034	Cytochrome c
PF02167	Cytochrome C1 family
PF14537	Cytochrome c3
PF14495	Cytochrome c-550 domain
PF02335	Cytochrome c552
PF02085	Class III cytochrome C family
PF01322	Cytochrome C'
PF01578	Cytochrome C assembly protein
PF02239	Cytochrome D1 heme domain
PF03264	NapC/NirT cytochrome c family, N-terminal region
PF02276	Photosynthetic reaction centre cytochrome C subunit
PF09265	Cytokinin dehydrogenase 1, FAD and cytokinin binding
PF10407	Cdc14 phosphatase binding protein N-terminus
PF01801	Cytomegalovirus glycoprotein L
PF06084	Cytomegalovirus TRL10 protein
PF05984	Cytomegalovirus UL20A protein
PF06284	Cytomegalovirus UL84 protein
PF05963	Cytomegalovirus US3 protein
PF09000	Cytotoxic
PF01265	Cytochrome c/c1 heme lyase
PF02322	Cytochrome oxidase subunit II
PF12270	Cytochrome c oxidase subunit IV
PF13682	Chemoreceptor zinc-binding domain
PF09719	Putative redox-active protein (C_GCAxxG_C_C)
PF02363	Cysteine rich repeat
PF07908	D-aminoacylase, C-terminal region
PF14031	Putative serine dehydratase domain
PF07065	D123
PF08706	D5 N terminal like
PF07876	Stress responsive A/B Barrel Domain
PF02109	DAD family
PF05454	Dystroglycan (Dystrophin-associated glycoprotein 1)
PF03982	Diacylglycerol acyltransferase
PF00609	Diacylglycerol kinase accessory domain
PF00781	Diacylglycerol kinase catalytic domain
PF01219	Prokaryotic diacylglycerol kinase
PF14513	Diacylglycerol kinase N-terminus
PF00793	DAHP synthetase I family
PF01474	Class-II DAHP synthetase family
PF02733	Dak1 domain
PF13684	Dihydroxyacetone kinase family
PF02734	DAK2 domain
PF07478	D-ala D-ala ligase C-terminus
PF01820	D-ala D-ala ligase N-terminus
PF05746	DALR anticodon binding domain
PF09190	DALR domain
PF05869	DNA N-6-adenine-methyltransferase (Dam)
PF03045	DAN domain
PF01266	FAD dependent oxidoreductase
PF15199	D-amino acid oxidase activator
PF15228	Death-associated protein
PF07213	DAP10 membrane protein
PF10236	Mitochondrial ribosomal death-associated protein 3
PF05173	Dihydrodipicolinate reductase, C-terminus
PF01113	Dihydrodipicolinate reductase, N-terminus
PF08503	Tetrahydrodipicolinate succinyltransferase N-terminal
PF15268	Dapper
PF07930	D-aminopeptidase, domain B
PF07932	D-aminopeptidase, domain C
PF01678	Diaminopimelate epimerase
PF05395	Protein phosphatase inhibitor 1/DARPP-32
PF08655	DASH complex subunit Ask1
PF08649	DASH complex subunit Dad1
PF08654	DASH complex subunit Dad2
PF08656	DASH complex subunit Dad3
PF08650	DASH complex subunit Dad4
PF08653	DASH complex subunit Dam1
PF08651	DASH complex subunit Duo1
PF08227	DASH complex subunit Hsk3 like
PF08287	Spc19
PF08657	DASH complex subunit Spc34
PF03344	Daxx Family
PF11029	DAZ associated protein 2 (DAZAP2)
PF01682	DB module
PF14545	Dof, BCAP, and BANK (DBB) motif,
PF14443	DBC1
PF10683	Hermes transposase DNA-binding domain
PF03108	MuDR family transposase
PF13892	DNA-binding domain
PF02277	Phosphoribosyltransferase
PF12361	Duffy-antigen binding protein
PF08147	DBP10CT (NUC160) domain
PF03880	DbpA RNA binding domain
PF05011	Lariat debranching enzyme, C-terminal domain
PF15349	DDB1- and CUL4-associated factor 16
PF14939	DDB1-and CUL4-substrate receptor 15, WD repeat
PF06559	2'-deoxycytidine 5'-triphosphate deaminase (DCD)
PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
PF08211	Cytidine and deoxycytidylate deaminase zinc-binding region
PF06058	Dcp1-like decapping family
PF05026	Dcp2, box A domain
PF05652	Scavenger mRNA decapping enzyme (DcpS) N-terminal
PF11969	Scavenger mRNA decapping enzyme C-term binding
PF14047	Dppa2/4 conserved region
PF11739	Dicarboxylate transport
PF06808	DctM-like transporters
PF04290	Tripartite ATP-independent periplasmic transporters, DctQ component
PF03605	Anaerobic c4-dicarboxylate membrane transporter
PF03606	C4-dicarboxylate anaerobic carrier
PF03607	Doublecortin
PF07782	DC-STAMP-like protein
PF10172	Det1 complexing ubiquitin ligase
PF10161	Putative mitochondrial precursor protein
PF03455	dDENN domain
PF03184	DDE superfamily endonuclease
PF02914	Bacteriophage Mu transposase
PF13358	DDE superfamily endonuclease
PF13546	DDE superfamily endonuclease
PF01609	Transposase DDE domain
PF13586	Transposase DDE domain
PF13612	Transposase DDE domain
PF13701	Transposase DDE domain group 1
PF13737	Transposase DDE domain
PF13751	Transposase DDE domain
PF13843	Transposase IS4
PF13808	DDE_Tnp_1-associated
PF04693	Archaeal putative transposase ISC1217
PF13359	DDE superfamily endonuclease
PF03400	IS1 transposase
PF12762	ISXO2-like transposase domain
PF13610	DDE domain
PF03050	Transposase IS66 family
PF13817	IS66 C-terminal element
PF07592	Rhodopirellula transposase DDE domain
PF01610	Transposase
PF01526	Tn3 transposase DDE domain
PF02862	DDHD domain
PF03345	Oligosaccharyltransferase 48 kDa subunit beta
PF08841	Diol dehydratase reactivase ATPase-like domain
PF12747	DdrB-like protein
PF09756	DDRGK domain
PF02791	DDT domain
PF12121	Dermaseptin
PF00270	DEAD/DEAH box helicase
PF12343	Cold shock protein DEAD box A
PF06733	DEAD_2
PF08494	DEAD/H associated
PF00531	Death domain
PF14786	Tube Death domain
PF04624	Dec-1 repeat
PF04626	Dec-1 protein, C terminal region
PF04625	DEC-1 protein, N-terminal region
PF02352	Decorin binding protein
PF01335	Death effector domain
PF01548	Transposase
PF06920	Dedicator of cytokinesis
PF00323	Mammalian defensin
PF01097	Arthropod defensin
PF08131	Defensin-like peptide family
PF07936	Potassium-channel blocking toxin
PF00711	Beta defensin
PF13841	Beta defensin
PF14862	Big defensin
PF00879	Defensin propeptide
PF08181	DegQ (SacQ) family
PF05384	Sensor protein DegS
PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
PF02645	Uncharacterised protein, DegV family COG1307
PF13486	Reductive dehalogenase subunit
PF10778	Halocarboxylic acid dehydrogenase DehI
PF09098	Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding
PF13816	Haem-containing dehydratase
PF02286	Dehydratase large subunit
PF02288	Dehydratase medium subunit
PF02287	Dehydratase small subunit
PF00257	Dehydrin
PF08766	DEK C terminal domain
PF12041	Transcriptional regulator DELLA protein N terminal
PF05599	Deltaretrovirus Tax protein
PF05372	Delta lysin family
PF15498	Nephrin and CD2AP-binding protein, Dendrin
PF02141	DENN (AEX-3) domain
PF02336	Capsid protein VP4
PF01791	DeoC/LacD family aldolase
PF00455	DeoR C terminal sensor domain
PF00610	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
PF15343	Decidual protein induced by progesterone family
PF04511	Der1-like family
PF14704	Dermatopontin
PF15291	Dermcidin, antibiotic peptide
PF06771	Viral Desmoplakin N-terminus
PF05497	Destabilase
PF01880	Desulfoferrodoxin
PF06397	Desulfoferrodoxin, N-terminal domain
PF09737	De-etiolated protein 1 Det1
PF01905	CRISPR-associated negative auto-regulator DevR/Csa2
PF10539	Development and cell death domain
PF15198	Dexamethasone-induced
PF09033	DNA Fragmentation factor 45kDa, C terminal domain
PF09230	DNA fragmentation factor 40 kDa
PF04127	DNA / pantothenate metabolism flavoprotein
PF08630	Dfp1/Him1, central region
PF08859	DGC domain
PF07324	DiGeorge syndrome critical region 6 (DGCR6) protein
PF11024	Dispersed gene family protein 1 of Trypanosoma cruzi region 4
PF11038	Dispersed gene family protein 1 of Trypanosoma cruzi region 5
PF11040	Dispersed gene family protein 1 of Trypanosoma cruzi C-terminus
PF05035	2-keto-3-deoxy-galactonokinase
PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
PF09626	Dihaem cytochrome c
PF08385	Dynein heavy chain, N-terminal region 1
PF08393	Dynein heavy chain, N-terminal region 2
PF00701	Dihydrodipicolinate synthetase family
PF00186	Dihydrofolate reductase
PF06442	R67 dihydrofolate reductase
PF01368	DHH family
PF02272	DHHA1 domain
PF02833	DHHA2 domain
PF14286	DHHW protein
PF12890	Dihydro-orotase-like
PF10418	Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
PF01180	Dihydroorotate dehydrogenase
PF01959	3-dehydroquinate synthase (EC 4.6.1.3)
PF01487	Type I 3-dehydroquinase
PF01220	Dehydroquinase class II
PF01761	3-dehydroquinate synthase
PF14571	Stress-induced protein Di19, C-terminal
PF05651	Putative sugar diacid recognition
PF05358	DicB protein
PF03368	Dicer dimerisation domain
PF11492	Cricket paralysis virus, VP4
PF04706	Dickkopf N-terminal cysteine-rich region
PF10069	Sensory domain found in DIguanylate Cyclases & Two-component systems
PF09267	Dictyostelium STAT, coiled coil
PF05720	Cell-cell adhesion domain
PF05462	Slime mold cyclic AMP receptor
PF00526	Dictyostelium (slime mold) repeat
PF05086	Dictyostelium (Slime Mold) REP protein
PF04562	Dictyostelium spore coat protein, N terminus
PF04922	DIE2/ALG10 family
PF01843	DIL domain
PF08194	DIM protein
PF02966	Mitosis protein DIM1
PF08100	Dimerisation domain
PF05699	hAT family C-terminal dimerisation region
PF02281	Transposase Tn5 dimerisation domain
PF09505	Dimethylamine methyltransferase (Dimeth_PyL)
PF05163	DinB family
PF12867	DinB superfamily
PF06183	DinI-like family
PF00775	Dioxygenase
PF04444	Catechol dioxygenase N terminus
PF14226	non-haem dioxygenase in morphine synthesis N-terminal
PF01866	Putative diphthamide synthesis protein
PF02763	Diphtheria toxin, C domain
PF01324	Diphtheria toxin, R domain
PF02764	Diphtheria toxin, T domain
PF11763	Cell-wall adhesin ligand-binding C-terminal
PF03018	Dirigent-like protein
PF06584	DIRP
PF10635	DisA bacterial checkpoint controller linker region
PF08480	Disaggregatase related
PF06848	Disaggregatase related repeat
PF02457	DisA bacterial checkpoint controller nucleotide-binding
PF02377	Dishevelled specific domain
PF00200	Disintegrin
PF04505	Interferon-induced transmembrane protein
PF06491	Disulphide isomerase
PF06750	Bacterial Peptidase A24 N-terminal domain
PF05141	Pyoverdine/dityrosine biosynthesis protein
PF04977	Septum formation initiator
PF05103	DivIVA protein
PF00778	DIX domain
PF01965	DJ-1/PfpI family
PF13587	N-terminal domain of DJ-1_PfpI family
PF08068	DKCLD (NUC011) domain
PF13644	DKNYY family
PF14878	Death-like domain of SPT6
PF01738	Dienelactone hydrolase family
PF05783	Dynein light intermediate chain (DLIC)
PF12413	Homeobox protein distal-less-like N terminal
PF04914	DltD C-terminal region
PF04918	DltD central region
PF04915	DltD N-terminal region
PF00751	DM DNA binding domain
PF10517	Electron transfer DM13
PF07841	DM4/DM12 family
PF03474	DMRTA motif
PF05499	DNA methyltransferase 1-associated protein 1 (DMAP1)
PF06464	DMAP1-binding Domain
PF07263	Dentin matrix protein 1 (DMP1)
PF07836	DmpG-like communication domain
PF08826	DMPK coiled coil domain like
PF00885	6,7-dimethyl-8-ribityllumazine synthase
PF12374	Double-sex mab3 related transcription factor 1
PF04976	DMSO reductase anchor subunit (DmsC)
PF08696	DNA replication factor Dna2
PF11638	DnaA N-terminal domain
PF00772	DnaB-like helicase N terminal domain
PF07261	Replication initiation and membrane attachment
PF10410	DnaB-helicase binding domain of primase
PF03796	DnaB-like helicase C terminal domain
PF08278	DNA primase DnaG DnaB-binding
PF07319	Primosomal protein DnaI N-terminus
PF00226	DnaJ domain
PF14308	X-domain of DnaJ-containing
PF00684	DnaJ central domain
PF12339	DNA-J related protein
PF09115	DNA polymerase III, delta subunit, C terminal
PF11590	DNA polymerase catalytic subunit Pol
PF08452	DNA polymerase family B exonuclease domain, N-terminal
PF02577	Bifunctional nuclease
PF03265	Deoxyribonuclease II
PF14040	Deoxyribonuclease NucA/NucB
PF08713	DNA alkylation repair enzyme
PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
PF13724	DNA-binding domain
PF07157	DNA circularisation protein N-terminus
PF03989	DNA gyrase C-terminal domain, beta-propeller
PF00204	DNA gyrase B
PF00986	DNA gyrase B subunit, carboxyl terminus
PF03603	DNA polymerase III psi subunit
PF01653	NAD-dependent DNA ligase adenylation domain
PF04679	ATP dependent DNA ligase C terminal region
PF01068	ATP dependent DNA ligase domain
PF04675	DNA ligase N terminus
PF11411	DNA ligase IV
PF03120	NAD-dependent DNA ligase OB-fold domain
PF14743	DNA ligase OB-like domain
PF03119	NAD-dependent DNA ligase C4 zinc finger domain
PF00145	C-5 cytosine-specific DNA methylase
PF01119	DNA mismatch repair protein, C-terminal domain
PF11053	Terminase DNA packaging enzyme
PF11123	DNA packaging protein
PF02499	Probable DNA packing protein, C-terminus
PF02500	Probable DNA packing protein, N-terminus
PF00875	DNA photolyase
PF07733	Bacterial DNA polymerase III alpha subunit
PF14480	DNA polymerase III polC-type N-terminus I
PF11490	DNA polymerase III polC-type N-terminus II
PF00712	DNA polymerase III beta subunit, N-terminal domain
PF02767	DNA polymerase III beta subunit, central domain
PF02768	DNA polymerase III beta subunit, C-terminal domain
PF04364	DNA polymerase III chi subunit, HolC
PF06144	DNA polymerase III, delta subunit
PF13177	DNA polymerase III, delta subunit
PF14840	Processivity clamp loader gamma complex DNA pol III C-term
PF12169	DNA polymerase III subunits gamma and tau domain III
PF12168	DNA polymerase III subunits tau domain IV DnaB-binding
PF12170	DNA polymerase III tau subunit V interacting with alpha
PF06440	DNA polymerase III, theta subunit
PF00476	DNA polymerase family A
PF12254	DNA polymerase alpha subunit p180 N terminal
PF01612	3'-5' exonuclease
PF00136	DNA polymerase family B
PF03175	DNA polymerase type B, organellar and viral
PF08408	DNA polymerase family B viral insert
PF03104	DNA polymerase family B, exonuclease domain
PF10108	Predicted 3'-5' exonuclease related to the exonuclease domain of PolB
PF14792	DNA polymerase beta palm
PF14791	DNA polymerase beta thumb
PF04081	DNA polymerase delta, subunit 4
PF04042	DNA polymerase alpha/epsilon subunit B
PF10391	Fingers domain of DNA polymerase lambda
PF04931	DNA polymerase phi
PF00336	DNA polymerase (viral) C-terminal domain
PF00242	DNA polymerase (viral) N-terminal domain
PF02916	DNA polymerase processivity factor
PF04104	Eukaryotic and archaeal DNA primase, large subunit
PF01896	Eukaryotic and archaeal DNA primase small subunit
PF02481	DNA recombination-mediator protein A
PF14966	DNA repair REX1-B
PF03604	DNA directed RNA polymerase, 7 kDa subunit
PF00521	DNA gyrase/topoisomerase IV, subunit A
PF14709	double strand RNA binding domain from DEAD END PROTEIN 1
PF14072	DNA-sulfur modification-associated
PF01712	Deoxynucleoside kinase
PF12047	Cytosine specific DNA methyltransferase replication foci domain
PF14429	C2 domain in Dock180 and Zizimin proteins
PF00404	Dockerin type I repeat
PF08990	Erythronolide synthase docking
PF07311	Dodecin
PF14144	Seed dormancy control
PF03351	DOMON domain
PF08883	Dopa 4,5-dioxygenase family
PF04118	Dopey, N-terminal
PF11466	Prion-like protein Doppel
PF14839	DOR family
PF04124	Dor1-like family
PF08123	Histone methylation protein DOT1
PF11388	Phagosome trafficking protein DotA
PF09475	Dot/Icm secretion system protein (dot_icm_IcmQ)
PF07680	TQO small subunit DoxA
PF04173	TQO small subunit DoxD
PF07681	DoxX
PF13564	DoxX-like family
PF13781	DoxX-like family
PF08781	Transcription factor DP
PF03330	Rare lipoprotein A (RlpA)-like double-psi beta-barrel
PF14913	DPCD protein family
PF07297	Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)
PF08285	Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)
PF14207	DpnD/PcfM-like protein
PF04556	DpnII restriction endonuclease
PF12213	DNA polymerases epsilon N terminal
PF14049	Dppa2/4 conserved region in higher vertebrates
PF00930	Dipeptidyl peptidase IV (DPP IV) N-terminal region
PF04244	Deoxyribodipyrimidine photo-lyase-related protein
PF05186	Dpy-30 motif
PF10034	Q-cell neuroblast polarisation
PF07357	Dinitrogenase reductase ADP-ribosyltransferase (DRAT)
PF15550	Draxin
PF11719	DNA replication and checkpoint protein
PF05558	DREPP plasma membrane polypeptide
PF05219	DREV methyltransferase
PF06345	DRF Autoregulatory Domain
PF06346	Formin Homology Region 1
PF06367	Diaphanous FH3 Domain
PF06371	Diaphanous GTPase-binding Domain
PF07539	Down-regulated in metastasis
PF07522	DNA repair metallo-beta-lactamase
PF06044	Dam-replacing family
PF14860	DrrA phosphatidylinositol 4-phosphate binding domain
PF02635	DsrE/DsrF-like family
PF13686	DsrE/DsrF/DrsH-like family
PF07085	DRTGG domain
PF09750	Alternative splicing regulator
PF12393	Dr family adhesin
PF01916	Deoxyhypusine synthase
PF01323	DSBA-like thioredoxin domain
PF02600	Disulfide bond formation protein DsbB
PF11412	Disulphide bond corrector protein DsbC
PF10411	Disulfide bond isomerase protein N-terminus
PF02683	Cytochrome C biogenesis protein transmembrane region
PF13386	Cytochrome C biogenesis protein transmembrane region
PF12355	Down syndrome cell adhesion molecule C terminal
PF01984	Double-stranded DNA-binding domain
PF08148	DSHCT (NUC185) domain
PF12316	Segment polarity protein dishevelled (Dsh) C terminal
PF01414	Delta serrate ligand
PF11989	Retrograde transport protein Dsl1 C terminal
PF11988	Retrograde transport protein Dsl1 N terminal
PF00782	Dual specificity phosphatase, catalytic domain
PF14671	Dual specificity protein phosphatase, N-terminal half
PF10781	Dextransucrase DSRB
PF04358	DsrC like protein
PF08679	Dissimilatory sulfite reductase D (DsrD)
PF04077	DsrH like protein
PF00035	Double-stranded RNA binding motif
PF05160	DSS1/SEM1 family
PF08828	Doublesex dimerisation domain
PF00908	dTDP-4-dehydrorhamnose 3,5-epimerase
PF08070	DTHCT (NUC029) region
PF02593	Thymidylate synthase
PF03942	DTW domain
PF06207	Protein of unknown function (DUF1002)
PF06210	Protein of unknown function (DUF1003)
PF06219	Protein of unknown function (DUF1005)
PF06226	Protein of unknown function (DUF1007)
PF06230	Protein of unknown function (DUF1009)
PF06231	Protein of unknown function (DUF1010)
PF06237	Protein of unknown function (DUF1011)
PF06241	Protein of unknown function (DUF1012)
PF06242	Protein of unknown function (DUF1013)
PF06244	Protein of unknown function (DUF1014)
PF06245	Protein of unknown function (DUF1015)
PF06250	Protein of unknown function (DUF1016)
PF06252	Protein of unknown function (DUF1018)
PF06254	Protein of unknown function (DUF1019)
PF06255	Protein of unknown function (DUF1020)
PF06257	Protein of unknown function (DUF1021)
PF06260	Protein of unknown function (DUF1024)
PF06262	Possibl zinc metallo-peptidase
PF06265	Protein of unknown function (DUF1027)
PF06267	Family of unknown function (DUF1028)
PF06269	Protein of unknown function (DUF1029)
PF06270	Protein of unknown function (DUF1030)
PF06275	Protein of unknown function (DUF1031)
PF06278	Protein of unknown function (DUF1032)
PF06279	Protein of unknown function (DUF1033)
PF06280	Fn3-like domain (DUF1034)
PF06281	Protein of unknown function (DUF1035)
PF06282	Protein of unknown function (DUF1036)
PF06287	Protein of unknown function (DUF1039)
PF01954	Protein of unknown function DUF104
PF06288	Protein of unknown function (DUF1040)
PF06292	Domain of Unknown Function (DUF1041)
PF06294	Domain of Unknown Function (DUF1042)
PF06295	Protein of unknown function (DUF1043)
PF06296	Protein of unknown function (DUF1044)
PF06299	Protein of unknown function (DUF1045)
PF06304	Protein of unknown function (DUF1048)
PF06305	Protein of unknown function (DUF1049)
PF06319	Protein of unknown function (DUF1052)
PF06327	Domain of Unknown Function (DUF1053)
PF06335	Protein of unknown function (DUF1054)
PF06341	Protein of unknown function (DUF1056)
PF06342	Alpha/beta hydrolase of unknown function (DUF1057)
PF06348	Protein of unknown function (DUF1059)
PF01956	Integral membrane protein DUF106
PF06353	Protein of unknown function (DUF1062)
PF06356	Protein of unknown function (DUF1064)
PF06358	Protein of unknown function (DUF1065)
PF06362	Protein of unknown function (DUF1067)
PF06364	Protein of unknown function (DUF1068)
PF06370	Protein of unknown function (DUF1069)
PF06376	Protein of unknown function (DUF1070)
PF06378	Protein of unknown function (DUF1071)
PF06380	Protein of unknown function (DUF1072)
PF06381	Protein of unknown function (DUF1073)
PF06382	Protein of unknown function (DUF1074)
PF06388	Protein of unknown function (DUF1075)
PF06416	Protein of unknown function (DUF1076)
PF06417	Protein of unknown function (DUF1077)
PF06435	Repeat of unknown function (DUF1079)
PF01958	Domain of unknown function DUF108
PF06439	Domain of Unknown Function (DUF1080)
PF06448	Domain of Unknown Function (DUF1081)
PF06449	Mitochondrial domain of unknown function (DUF1082)
PF06452	Domain of unknown function (DUF1083)
PF06454	Protein of unknown function (DUF1084)
PF06461	Domain of Unknown Function (DUF1086)
PF06465	Domain of Unknown Function (DUF1087)
PF06469	Domain of Unknown Function (DUF1088)
PF06476	Protein of unknown function (DUF1090)
PF06477	Protein of unknown function (DUF1091)
PF06485	Protein of unknown function (DUF1092)
PF06486	Protein of unknown function (DUF1093)
PF06493	Protein of unknown function (DUF1096)
PF06496	Protein of unknown function (DUF1097)
PF06497	Protein of unknown function (DUF1098)
PF01345	Domain of unknown function DUF11
PF06500	Alpha/beta hydrolase of unknown function (DUF1100)
PF06503	Protein of unknown function (DUF1101)
PF06510	Protein of unknown function (DUF1102)
PF06513	Repeat of unknown function (DUF1103)
PF06518	Protein of unknown function (DUF1104)
PF06523	Protein of unknown function (DUF1106)
PF06526	Protein of unknown function (DUF1107)
PF06531	Protein of unknown function (DUF1108)
PF06532	Protein of unknown function (DUF1109)
PF01969	Protein of unknown function DUF111
PF06533	Protein of unknown function (DUF1110)
PF06537	Protein of unknown function (DUF1111)
PF06541	Protein of unknown function (DUF1113)
PF06544	Protein of unknown function (DUF1115)
PF06545	Protein of unknown function (DUF1116)
PF06547	Protein of unknown function (DUF1117)
PF06549	Protein of unknown function (DUF1118)
PF06550	Protein of unknown function (DUF1119)
PF06551	Protein of unknown function (DUF1120)
PF06557	Protein of unknown function (DUF1122)
PF06563	Protein of unknown function (DUF1125)
PF06565	Repeat of unknown function (DUF1126)
PF06568	Domain of unknown function (DUF1127)
PF06569	Protein of unknown function (DUF1128)
PF06570	Protein of unknown function (DUF1129)
PF06572	Protein of unknown function (DUF1131)
PF06575	Protein of unknown function (DUF1132)
PF06576	Protein of unknown function (DUF1133)
PF06577	Protein of unknown function (DUF1134)
PF06582	Repeat of unknown function (DUF1136)
PF06587	Protein of unknown function (DUF1137)
PF06592	Protein of unknown function (DUF1138)
PF06599	Protein of unknown function (DUF1139)
PF06600	Protein of unknown function (DUF1140)
PF06608	Protein of unknown function (DUF1143)
PF06610	Protein of unknown function (DUF1144)
PF06611	Protein of unknown function (DUF1145)
PF06612	Protein of unknown function (DUF1146)
PF06615	Protein of unknown function (DUF1147)
PF06618	Protein of unknown function (DUF1148)
PF06619	Protein of unknown function (DUF1149)
PF06620	Protein of unknown function (DUF1150)
PF06625	Protein of unknown function (DUF1151)
PF06626	Protein of unknown function (DUF1152)
PF06627	Protein of unknown function (DUF1153)
PF06631	Protein of unknown function (DUF1154)
PF06633	Protein of unknown function (DUF1155)
PF06634	Protein of unknown function (DUF1156)
PF06636	Protein of unknown function (DUF1157)
PF06643	Protein of unknown function (DUF1158)
PF01976	Protein of unknown function DUF116
PF06648	Protein of unknown function (DUF1160)
PF06649	Protein of unknown function (DUF1161)
PF06650	Protein of unknown function (DUF1162)
PF06651	Protein of unknown function (DUF1163)
PF06658	Protein of unknown function (DUF1168)
PF06663	Protein of unknown function (DUF1170)
PF06666	Protein of unknown function (DUF1173)
PF06671	Repeat of unknown function (DUF1174)
PF06672	Protein of unknown function (DUF1175)
PF06674	Protein of unknown function (DUF1176)
PF06675	Protein of unknown function (DUF1177)
PF06676	Protein of unknown function (DUF1178)
PF06678	Protein of unknown function (DUF1179)
PF06679	Protein of unknown function (DUF1180)
PF06680	Protein of unknown function (DUF1181)
PF06681	Protein of unknown function (DUF1182)
PF06682	Protein of unknown function (DUF1183)
PF06683	Protein of unknown function (DUF1184)
PF06685	Protein of unknown function (DUF1186)
PF06688	Protein of unknown function (DUF1187)
PF06690	Protein of unknown function (DUF1188)
PF06691	Protein of unknown function (DUF1189)
PF06693	Protein of unknown function (DUF1190)
PF06697	Protein of unknown function (DUF1191)
PF06698	Protein of unknown function (DUF1192)
PF06702	Protein of unknown function (DUF1193)
PF06707	Protein of unknown function (DUF1194)
PF06708	Protein of unknown function (DUF1195)
PF06709	Protein of unknown function (DUF1196)
PF06711	Protein of unknown function (DUF1198)
PF06712	Protein of unknown function (DUF1199)
PF06716	Protein of unknown function (DUF1201)
PF06717	Protein of unknown function (DUF1202)
PF06718	Protein of unknown function (DUF1203)
PF06721	Protein of unknown function (DUF1204)
PF06722	Protein of unknown function (DUF1205)
PF06724	Domain of Unknown Function (DUF1206)
PF06727	Protein of unknown function (DUF1207)
PF06736	Protein of unknown function (DUF1211)
PF06738	Protein of unknown function (DUF1212)
PF06740	Protein of unknown function (DUF1213)
PF06742	Protein of unknown function (DUF1214)
PF06744	Protein of unknown function (DUF1215)
PF06746	Protein of unknown function (DUF1216)
PF06748	Protein of unknown function (DUF1217)
PF06749	Protein of unknown function (DUF1218)
PF06755	Protein of unknown function (DUF1219)
PF06758	Repeat of unknown function (DUF1220)
PF06760	Protein of unknown function (DUF1221)
PF06764	Protein of unknown function (DUF1223)
PF06777	Protein of unknown function (DUF1227)
PF06779	Protein of unknown function (DUF1228)
PF06797	Protein of unknown function (DUF1229)
PF01986	Domain of unknown function DUF123
PF06799	Protein of unknown function (DUF1230)
PF06802	Protein of unknown function (DUF1231)
PF06803	Protein of unknown function (DUF1232)
PF06806	Putative excisionase (DUF1233)
PF06822	Protein of unknown function (DUF1235)
PF06823	Protein of unknown function (DUF1236)
PF06824	Protein of unknown function (DUF1237)
PF06836	Protein of unknown function (DUF1240)
PF06840	Protein of unknown function (DUF1241)
PF06842	Protein of unknown function (DUF1242)
PF06844	Protein of unknown function (DUF1244)
PF06849	Protein of unknown function (DUF1246)
PF06851	Protein of unknown function (DUF1247)
PF06852	Protein of unknown function (DUF1248)
PF06853	Protein of unknown function (DUF1249)
PF06855	Protein of unknown function (DUF1250)
PF06856	Protein of unknown function (DUF1251)
PF06862	Protein of unknown function (DUF1253)
PF06863	Protein of unknown function (DUF1254)
PF06865	Protein of unknown function (DUF1255)
PF06866	Protein of unknown function (DUF1256)
PF06868	Protein of unknown function (DUF1257)
PF06869	Protein of unknown function (DUF1258)
PF01989	Protein of unknown function DUF126
PF06880	Protein of unknown function (DUF1262)
PF06882	Protein of unknown function (DUF1263)
PF06884	Protein of unknown function (DUF1264)
PF06887	Protein of unknown function (DUF1265)
PF06889	Protein of unknown function (DUF1266)
PF06896	Protein of unknown function (DUF1268)
PF06897	Protein of unknown function (DUF1269)
PF06900	Protein of unknown function (DUF1270)
PF06906	Protein of unknown function (DUF1272)
PF06908	Protein of unknown function (DUF1273)
PF06912	Protein of unknown function (DUF1275)
PF06916	Protein of unknown function (DUF1279)
PF01995	Domain of unknown function DUF128
PF06918	Protein of unknown function (DUF1280)
PF06924	Protein of unknown function (DUF1281)
PF06930	Protein of unknown function (DUF1282)
PF06932	Protein of unknown function (DUF1283)
PF06935	Protein of unknown function (DUF1284)
PF06938	Protein of unknown function (DUF1285)
PF06939	Protein of unknown function (DUF1286)
PF06940	Domain of unknown function (DUF1287)
PF06945	Protein of unknown function (DUF1289)
PF06947	Protein of unknown function (DUF1290)
PF06949	Protein of unknown function (DUF1292)
PF06950	Protein of unknown function (DUF1293)
PF06961	Protein of unknown function (DUF1294)
PF06966	Protein of unknown function (DUF1295)
PF06972	Protein of unknown function (DUF1296)
PF06973	Domain of unknown function (DUF1297)
PF06974	Protein of unknown function (DUF1298)
PF06975	Protein of unknown function (DUF1299)
PF06979	Protein of unknown function (DUF1301)
PF06980	Protein of unknown function (DUF1302)
PF06993	Protein of unknown function (DUF1304)
PF06996	Protein of unknown function (DUF1305)
PF06998	Protein of unknown function (DUF1307)
PF07000	Protein of unknown function (DUF1308)
PF01998	Protein of unknown function DUF131
PF07006	Protein of unknown function (DUF1310)
PF07007	Protein of unknown function (DUF1311)
PF07009	Protein of unknown function (DUF1312)
PF07011	Protein of unknown function (DUF1313)
PF07013	Protein of unknown function (DUF1314)
PF07023	Protein of unknown function (DUF1315)
PF07026	Protein of unknown function (DUF1317)
PF07027	Protein of unknown function (DUF1318)
PF07028	Protein of unknown function (DUF1319)
PF07030	Protein of unknown function (DUF1320)
PF07032	Protein of unknown function (DUF1322)
PF07037	Putative transcription regulator (DUF1323)
PF07038	Protein of unknown function (DUF1324)
PF07039	SGF29 tudor-like domain
PF07040	Protein of unknown function (DUF1326)
PF07041	Protein of unknown function (DUF1327)
PF07043	Protein of unknown function (DUF1328)
PF07044	Protein of unknown function (DUF1329)
PF07045	Protein of unknown function (DUF1330)
PF07048	Protein of unknown function (DUF1331)
PF07056	Protein of unknown function (DUF1335)
PF07059	Protein of unknown function (DUF1336)
PF07063	Domain of unknown function (DUF1338)
PF02001	Protein of unknown function  DUF134
PF07067	Protein of unknown function (DUF1340)
PF07071	Protein of unknown function (DUF1341)
PF07072	Protein of unknown function (DUF1342)
PF07075	Protein of unknown function (DUF1343)
PF07076	Protein of unknown function (DUF1344)
PF07077	Protein of unknown function (DUF1345)
PF07079	Protein of unknown function (DUF1347)
PF07080	Protein of unknown function (DUF1348)
PF07081	Protein of unknown function (DUF1349)
PF07082	Protein of unknown function (DUF1350)
PF07083	Protein of unknown function (DUF1351)
PF07086	Protein of unknown function (DUF1352)
PF07087	Protein of unknown function (DUF1353)
PF07090	Protein of unknown function (DUF1355)
PF07092	Protein of unknown function (DUF1356)
PF07094	Protein of unknown function (DUF1357)
PF07096	Protein of unknown function (DUF1358)
PF07097	Protein of unknown function (DUF1359)
PF07098	Protein of unknown function (DUF1360)
PF07099	Protein of unknown function (DUF1361)
PF07101	Protein of unknown function (DUF1363)
PF07102	Protein of unknown function (DUF1364)
PF07103	Protein of unknown function (DUF1365)
PF07104	Protein of unknown function (DUF1366)
PF07105	Protein of unknown function (DUF1367)
PF07112	Protein of unknown function (DUF1368)
PF02006	Protein of unknown function DUF137
PF07114	Protein of unknown function (DUF1370)
PF07115	Protein of unknown function (DUF1371)
PF07116	Protein of unknown function (DUF1372)
PF07117	Protein of unknown function (DUF1373)
PF07118	Protein of unknown function (DUF1374)
PF07119	Protein of unknown function (DUF1375)
PF07120	Protein of unknown function (DUF1376)
PF07125	Protein of unknown function (DUF1378)
PF07126	Protein of unknown function (DUF1379)
PF07128	Protein of unknown function (DUF1380)
PF07129	Protein of unknown function (DUF1381)
PF07131	Protein of unknown function (DUF1382)
PF07134	Protein of unknown function (DUF1383)
PF07136	Protein of unknown function (DUF1385)
PF07138	Protein of unknown function (DUF1386)
PF07139	Protein of unknown function (DUF1387)
PF07142	Repeat of unknown function (DUF1388)
PF07146	Protein of unknown function (DUF1389)
PF07150	Protein of unknown function (DUF1390)
PF07151	Protein of unknown function (DUF1391)
PF07154	Protein of unknown function (DUF1392)
PF07159	Protein of unknown function (DUF1394)
PF07160	Protein of unknown function (DUF1395)
PF07161	Protein of unknown function (DUF1396)
PF07165	Protein of unknown function (DUF1397)
PF07166	Protein of unknown function (DUF1398)
PF07173	Protein of unknown function (DUF1399)
PF07176	Alpha/beta hydrolase of unknown function (DUF1400)
PF07180	Protein of unknown function (DUF1401)
PF07182	Protein of unknown function (DUF1402)
PF07183	Protein of unknown function (DUF1403)
PF07185	Protein of unknown function (DUF1404)
PF07187	Protein of unknown function (DUF1405)
PF07190	Protein of unknown function (DUF1406)
PF07193	Protein of unknown function (DUF1408)
PF07197	Protein of unknown function (DUF1409)
PF07198	Protein of unknown function (DUF1410)
PF07199	Protein of unknown function (DUF1411)
PF07203	Protein of unknown function (DUF1412)
PF07205	Domain of unknown function (DUF1413)
PF07208	Protein of unknown function (DUF1414)
PF07209	Protein of unknown function (DUF1415)
PF07210	Protein of unknown function (DUF1416)
PF07214	Protein of unknown function (DUF1418)
PF07215	Protein of unknown function (DUF1419)
PF07220	Protein of unknown function (DUF1420)
PF07223	Protein of unknown function (DUF1421)
PF07226	Protein of unknown function (DUF1422)
PF07227	Protein of unknown function (DUF1423)
PF07232	Putative rep protein (DUF1424)
PF07233	Protein of unknown function (DUF1425)
PF07234	Protein of unknown function (DUF1426)
PF07235	Protein of unknown function (DUF1427)
PF07237	Protein of unknown function (DUF1428)
PF07242	Protein of unknown function (DUF1430)
PF07248	Protein of unknown function (DUF1431)
PF07252	Protein of unknown function (DUF1433)
PF07254	Protein of unknown function (DUF1434)
PF07256	Protein of unknown function (DUF1435)
PF07262	Protein of unknown function (DUF1436)
PF07270	Protein of unknown function (DUF1438)
PF07273	Protein of unknown function (DUF1439)
PF07274	Protein of unknown function (DUF1440)
PF07278	Protein of unknown function (DUF1441)
PF07279	Protein of unknown function (DUF1442)
PF07280	Protein of unknown function (DUF1443)
PF07285	Protein of unknown function (DUF1444)
PF07286	Protein of unknown function (DUF1445)
PF07287	Protein of unknown function (DUF1446)
PF07288	Protein of unknown function (DUF1447)
PF07289	Protein of unknown function (DUF1448)
PF07290	Protein of unknown function (DUF1449)
PF07293	Protein of unknown function (DUF1450)
PF07295	Protein of unknown function (DUF1451)
PF07301	Protein of unknown function (DUF1453)
PF07305	Protein of unknown function (DUF1454)
PF07306	Protein of unknown function (DUF1455)
PF07308	Protein of unknown function (DUF1456)
PF07312	Protein of unknown function (DUF1459)
PF07313	Protein of unknown function (DUF1460)
PF07314	Protein of unknown function (DUF1461)
PF07315	Protein of unknown function (DUF1462)
PF07316	Protein of unknown function (DUF1463)
PF07318	Protein of unknown function (DUF1464)
PF07323	Protein of unknown function (DUF1465)
PF07326	Protein of unknown function (DUF1466)
PF07330	Protein of unknown function (DUF1467)
PF07332	Protein of unknown function (DUF1469)
PF07336	Protein of unknown function (DUF1470)
PF07338	Protein of unknown function (DUF1471)
PF07339	Protein of unknown function (DUF1472)
PF07341	Protein of unknown function (DUF1473)
PF07342	Protein of unknown function (DUF1474)
PF07343	Protein of unknown function (DUF1475)
PF07345	Domain of unknown function (DUF1476)
PF07346	Protein of unknown function (DUF1477)
PF07349	Protein of unknown function (DUF1478)
PF07350	Protein of unknown function (DUF1479)
PF02520	Domain of unknown function DUF148
PF07351	Protein of unknown function (DUF1480)
PF07356	Protein of unknown function (DUF1481)
PF07358	Protein of unknown function (DUF1482)
PF07363	Protein of unknown function (DUF1484)
PF07364	Protein of unknown function (DUF1485)
PF07368	Protein of unknown function (DUF1487)
PF07369	Protein of unknown function (DUF1488)
PF07370	Protein of unknown function (DUF1489)
PF07371	Protein of unknown function (DUF1490)
PF07372	Protein of unknown function (DUF1491)
PF07374	Protein of unknown function (DUF1492)
PF07377	Protein of unknown function (DUF1493)
PF07379	Protein of unknown function (DUF1494)
PF07381	Winged helix DNA-binding domain (DUF1495)
PF07383	Protein of unknown function (DUF1496)
PF07384	Protein of unknown function (DUF1497)
PF07385	Protein of unknown function (DUF1498)
PF07386	Protein of unknown function (DUF1499)
PF02576	Uncharacterised BCR, YhbC family COG0779
PF07389	Protein of unknown function (DUF1500)
PF07394	Protein of unknown function (DUF1501)
PF07397	Repeat of unknown function (DUF1502)
PF07399	Protein of unknown function (DUF1504)
PF07403	Protein of unknown function (DUF1505)
PF07405	Protein of unknown function (DUF1506)
PF07408	Protein of unknown function (DUF1507)
PF07411	Domain of unknown function (DUF1508)
PF07420	Protein of unknown function (DUF1509)
PF07423	Protein of unknown function (DUF1510)
PF07431	Protein of unknown function (DUF1512)
PF07433	Protein of unknown function (DUF1513)
PF07438	Protein of unknown function (DUF1514)
PF07439	Protein of unknown function (DUF1515)
PF07457	Protein of unknown function (DUF1516)
PF07466	Protein of unknown function (DUF1517)
PF07469	Domain of unknown function (DUF1518)
PF07481	Domain of Unknown Function (DUF1521)
PF07482	Domain of Unknown Function (DUF1522)
PF07509	Protein of unknown function (DUF1523)
PF07510	Protein of unknown function (DUF1524)
PF07511	Protein of unknown function (DUF1525)
PF07515	Protein of unknown function (DUF1528)
PF07485	Domain of Unknown Function (DUF1259)
PF07550	Protein of unknown function (DUF1533)
PF07551	Protein of unknown function (DUF1534)
PF07005	Protein of unknown function, DUF1537
PF07556	Protein of unknown function (DUF1538)
PF07560	Domain of Unknown Function (DUF1539)
PF07561	Domain of Unknown Function (DUF1540)
PF07563	Protein of unknown function (DUF1541)
PF07564	Domain of Unknown Function (DUF1542)
PF07566	Domain of Unknown Function (DUF1543)
PF07571	Protein of unknown function (DUF1546)
PF07577	Domain of Unknown Function (DUF1547)
PF07579	Domain of Unknown Function (DUF1548)
PF02582	Uncharacterised ACR, YagE family COG1723
PF07585	Protein of unknown function (DUF1551)
PF07588	Protein of unknown function (DUF1554)
PF07590	Protein of unknown function (DUF1556)
PF07597	Protein of unknown function (DUF1560)
PF07598	Protein of unknown function (DUF1561)
PF07599	Protein of unknown function (DUF1563)
PF07600	Protein of unknown function (DUF1564)
PF07602	Protein of unknown function (DUF1565)
PF07603	Protein of unknown function (DUF1566)
PF07606	Protein of unknown function (DUF1569)
PF07607	Protein of unknown function (DUF1570)
PF07608	Protein of unknown function (DUF1571)
PF07609	Protein of unknown function (DUF1572)
PF07610	Protein of unknown function (DUF1573)
PF07611	Protein of unknown function (DUF1574)
PF07613	Protein of unknown function (DUF1576)
PF07614	Protein of unknown function (DUF1577)
PF07617	Protein of unknown function (DUF1579)
PF07618	Protein of unknown function (DUF1580)
PF07619	Protein of unknown function (DUF1581)
PF07621	Protein of unknown function (DUF1582)
PF07622	Protein of unknown function (DUF1583)
PF07625	Protein of unknown function (DUF1586)
PF07628	Protein of unknown function (DUF1589)
PF02586	Uncharacterised ACR, COG2135
PF07629	Protein of unknown function (DUF1590)
PF07632	Protein of unknown function (DUF1593)
PF07642	Outer membrane protein family (DUF1597)
PF07643	Protein of unknown function (DUF1598)
PF07659	Domain of Unknown Function (DUF1599)
PF01519	Protein of unknown function DUF16
PF07667	Protein of unknown function (DUF1600)
PF07671	Protein of unknown function (DUF1601)
PF07673	Protein of unknown function (DUF1602)
PF07713	Protein of unknown function (DUF1604)
PF07753	Protein of unknown function (DUF1609)
PF02588	Uncharacterized BCR, YitT family COG1284
PF07754	Domain of unknown function (DUF1610)
PF07755	Protein of unknown function (DUF1611)
PF07756	Protein of unknown function (DUF1612)
PF07758	Protein of unknown function (DUF1614)
PF07759	Protein of unknown function (DUF1615)
PF07760	Protein of unknown function (DUF1616)
PF07761	Protein of unknown function (DUF1617)
PF07762	Protein of unknown function (DUF1618)
PF07773	Protein of unknown function (DUF1619)
PF02589	Uncharacterised ACR, YkgG family COG1556
PF07774	Protein of unknown function (DUF1620)
PF07784	Protein of unknown function (DUF1622)
PF07785	Protein of unknown function (DUF1623)
PF07786	Protein of unknown function (DUF1624)
PF07787	Protein of unknown function (DUF1625)
PF07788	Protein of unknown function (DUF1626)
PF07789	Protein of unknown function (DUF1627)
PF07790	Protein of unknown function (DUF1628)
PF07791	Protein of unknown function (DUF1629)
PF07793	Protein of unknown function (DUF1631)
PF07857	CEO family (DUF1632)
PF07794	Protein of unknown function (DUF1633)
PF07843	Protein of unknown function (DUF1634)
PF07795	Protein of unknown function (DUF1635)
PF07845	Protein of unknown function (DUF1636)
PF07847	Protein of unknown function (DUF1637)
PF07796	Protein of unknown function (DUF1638)
PF07797	Protein of unknown function (DUF1639)
PF02591	Putative zinc ribbon domain
PF07798	Protein of unknown function (DUF1640)
PF07849	Protein of unknown function (DUF1641)
PF07852	Protein of unknown function (DUF1642)
PF07799	Protein of unknown function (DUF1643)
PF07800	Protein of unknown function (DUF1644)
PF07816	Protein of unknown function (DUF1645)
PF07854	Protein of unknown function (DUF1646)
PF07801	Protein of unknown function (DUF1647)
PF07853	Protein of unknown function (DUF1648)
PF07855	Protein of unknown function (DUF1649)
PF02592	Uncharacterized ACR, YhhQ family COG1738
PF07864	Protein of unknown function (DUF1651)
PF07865	Protein of unknown function (DUF1652)
PF07866	Protein of unknown function (DUF1653)
PF07867	Protein of unknown function (DUF1654)
PF07868	Protein of unknown function (DUF1655)
PF07869	Protein of unknown function (DUF1656)
PF07870	Protein of unknown function (DUF1657)
PF07871	Protein of unknown function (DUF1658)
PF07872	Protein of unknown function (DUF1659)
PF07874	Prophage protein (DUF1660)
PF07877	Protein of unknown function (DUF1661)
PF07878	Protein of unknown function (DUF1662)
PF07909	Protein of unknown function (DUF1663)
PF07889	Protein of unknown function (DUF1664)
PF07891	Protein of unknown function (DUF1666)
PF07892	Protein of unknown function (DUF1667)
PF07893	Protein of unknown function (DUF1668)
PF07894	Protein of unknown function (DUF1669)
PF02594	Uncharacterised ACR, YggU family COG1872
PF07900	Protein of unknown function (DUF1670)
PF07901	Protein of unknown function (DUF1672)
PF07895	Protein of unknown function (DUF1673)
PF07896	Protein of unknown function (DUF1674)
PF07897	Protein of unknown function (DUF1675)
PF07898	Protein of unknown function (DUF1676)
PF07911	Protein of unknown function (DUF1677)
PF07913	Protein of unknown function (DUF1678)
PF07914	Protein of unknown function (DUF1679)
PF07944	Putative glycosyl hydrolase of unknown function (DUF1680)
PF07933	Protein of unknown function (DUF1681)
PF07946	Protein of unknown function (DUF1682)
PF07920	Protein of unknown function (DUF1684)
PF07939	Protein of unknown function (DUF1685)
PF07937	Protein of unknown function (DUF1686)
PF07955	Protein of unknown function (DUF1687)
PF07958	Protein of unknown function (DUF1688)
PF07954	Protein of unknown function (DUF1689)
PF02596	Uncharacterised ArCR, COG2043
PF07956	Protein of Unknown function (DUF1690)
PF07950	Protein of unknown function (DUF1691)
PF07984	Domain of unknown function (DUF1693)
PF07997	Protein of unknown function (DUF1694)
PF08002	Protein of unknown function (DUF1697)
PF08004	Protein of unknown function (DUF1699)
PF08006	Protein of unknown function (DUF1700)
PF08012	Protein of unknown function (DUF1702)
PF08011	Protein of unknown function (DUF1703)
PF08014	Domain of unknown function (DUF1704)
PF08019	Domain of unknown function (DUF1705)
PF08020	Protein of unknown function (DUF1706)
PF08044	Domain of unknown function (DUF1707)
PF08101	Domain of unknown function (DUF1708)
PF08217	Fungal domain of unknown function (DUF1712)
PF08213	Mitochondrial domain of unknown function (DUF1713)
PF05414	Viral domain of unknown function (DUF1717)
PF08224	Domain of unknown function (DUF1719)
PF08226	Domain of unknown function (DUF1720)
PF08349	Protein of unknown function (DUF1722)
PF08350	Domain of unknown function (DUF1724)
PF08333	Protein of unknown function (DUF1725)
PF08351	Domain of unknown function (DUF1726)
PF08353	Domain of unknown function (DUF1727)
PF08354	Domain of unknown function (DUF1729)
PF08331	Domain of unknown function (DUF1730)
PF08338	Domain of unknown function (DUF1731)
PF08340	Domain of unknown function (DUF1732)
PF08522	Domain of unknown function (DUF1735)
PF08409	Domain of unknown function (DUF1736)
PF08410	Domain of unknown function (DUF1737)
PF08401	Domain of unknown function (DUF1738)
PF08427	Domain of unknown function (DUF1741)
PF08489	Domain of unknown function (DUF1743)
PF08490	Domain of unknown function (DUF1744)
PF08508	Fungal domain of unknown function (DUF1746)
PF08520	Fungal protein of unknown function (DUF1748)
PF08538	Protein of unknown function (DUF1749)
PF08551	Eukaryotic integral membrane protein (DUF1751)
PF08550	Fungal protein of unknown function (DUF1752)
PF08555	Eukaryotic family of unknown function (DUF1754)
PF08560	Protein of unknown function (DUF1757)
PF05585	Putative peptidase (DUF1758)
PF03564	Protein of unknown function (DUF1759)
PF08570	Protein of unknown function (DUF1761)
PF08574	Protein of unknown function (DUF1762)
PF08576	Eukaryotic protein of unknown function (DUF1764)
PF08578	Protein of unknown function (DUF1765)
PF08585	Domain of unknown function (DUF1767)
PF08719	Domain of unknown function (DUF1768)
PF08588	Protein of unknown function (DUF1769)
PF02620	Uncharacterized ACR, COG1399
PF08589	Fungal protein of unknown function (DUF1770)
PF08590	Domain of unknown function (DUF1771)
PF08592	Domain of unknown function (DUF1772)
PF08611	Fungal protein of unknown function (DUF1774)
PF07987	Domain of unkown function (DUF1775)
PF08643	Fungal family of unknown function (DUF1776)
PF08648	Protein of unknown function (DUF1777)
PF08681	Protein of unknown function (DUF1778)
PF08680	Protein of unknown function (DUF1779)
PF08682	Protein of unknown function (DUF1780)
PF08699	Domain of unknown function (DUF1785)
PF08735	Putative pyruvate format-lyase activating enzyme (DUF1786)
PF08747	Domain of unknown function (DUF1788)
PF08748	Domain of unknown function (DUF1789)
PF02622	Uncharacterized ACR, COG1678
PF08759	Domain of unknown function (DUF1792)
PF08760	Domain of unknown function (DUF1793)
PF08768	Domain of unknown function (DUF1794)
PF08786	Domain of unknown function (DUF1795)
PF08795	Putative papain-like cysteine peptidase (DUF1796)
PF08796	Protein of unknown function (DUF1797)
PF08807	Bacterial domain of unknown function (DUF1798)
PF08809	Phage related hypothetical protein (DUF1799)
PF08811	Protein of unknown function (DUF1800)
PF08818	Domain of unknown function (DU1801)
PF08819	Domain of unknown function (DUF1802)
PF08820	Domain of unknown function (DUF1803)
PF08822	Protein of unknown function (DUF1804)
PF08827	Domain of unknown function (DUF1805)
PF08830	Protein of unknown function (DUF1806)
PF08837	Protein of unknown function (DUF1810)
PF08838	Protein of unknown function (DUF1811)
PF08843	Nucleotidyl transferase of unknown function (DUF1814)
PF08844	Domain of unknown function (DUF1815)
PF08846	Domain of unknown function (DUF1816)
PF08847	Domain of unknown function (DUF1817)
PF08848	Domain of unknown function (DUF1818)
PF08849	Putative inner membrane protein (DUF1819)
PF08850	Domain of unknown function (DUF1820)
PF08852	Protein of unknown function (DUF1822)
PF08853	Domain of unknown function (DUF1823)
PF08854	Domain of unknown function (DUF1824)
PF08855	Domain of unknown function (DUF1825)
PF08856	Protein of unknown function (DUF1826)
PF08860	Domain of unknown function (DUF1827)
PF08861	Domain of unknown function DUF1828
PF08862	Domain of unknown function DUF1829
PF08865	Domain of unknown function (DUF1830)
PF08866	Putative amino acid metabolism
PF08870	Domain of unknown function (DUF1832)
PF08875	Domain of unknown function (DUF1833)
PF08873	Domain of unknown function (DUF1834)
PF08874	Domain of unknown function (DUF1835)
PF08876	Domain of unknown function (DUF1836)
PF08878	Domain of unknown function (DUF1837)
PF08894	Protein of unknown function (DUF1838)
PF08893	Domain of unknown function (DUF1839)
PF08895	Domain of unknown function (DUF1840)
PF08897	Domain of unknown function (DUF1841)
PF08896	Domain of unknown function (DUF1842)
PF08898	Domain of unknown function (DUF1843)
PF08899	Domain of unknown function (DUF1844)
PF08900	Domain of unknown function (DUF1845)
PF08903	Domain of unknown function (DUF1846)
PF08901	Protein of unknown function (DUF1847)
PF08902	Domain of unknown function (DUF1848)
PF08904	Domain of unknown function (DUF1849)
PF08905	Domain of unknown function (DUF1850)
PF08906	Domain of unknown function (DUF1851)
PF08908	Domain of unknown function (DUF1852)
PF08907	Domain of unknown function (DUF1853)
PF08909	Domain of unknown function (DUF1854)
PF08983	Domain of unknown function (DUF1856)
PF08982	Domain of unknown function (DUF1857)
PF08984	Domain of unknown function (DUF1858)
PF08948	Domain of unknown function (DUF1859)
PF08949	Domain of unknown function (DUF1860)
PF08950	Protein of unknown function (DUF1861)
PF08937	MTH538 TIR-like domain (DUF1863)
PF08933	Domain of unknown function (DUF1864)
PF08952	Domain of unknown function (DUF1866)
PF08956	Domain of unknown function (DUF1869)
PF02638	Glycosyl hydrolase like GH101
PF08965	Domain of unknown function (DUF1870)
PF08958	Domain of unknown function (DUF1871)
PF08960	Domain of unknown function (DUF1874)
PF08961	Domain of unknown function (DUF1875)
PF08962	Domain of unknown function (DUF1876)
PF08974	Domain of unknown function (DUF1877)
PF08963	Protein of unknown function (DUF1878)
PF02639	Uncharacterized BCR, YaiI/YqxD family COG1671
PF08976	Domain of unknown function (DUF1880)
PF08966	Domain of unknown function (DUF1882)
PF08980	Domain of unknown function (DUF1883)
PF08967	Domain of unknown function (DUF1884)
PF08968	Domain of unknown function (DUF1885)
PF09171	Domain of unknown function (DUF1886)
PF09002	Domain of unknown function (DUF1887)
PF08985	Domain of unknown function (DUF1888)
PF08986	Domain of unknown function (DUF1889)
PF09001	Domain of unknown function (DUF1890)
PF09004	Domain of unknown function (DUF1891)
PF08987	Protein of unknown function (DUF1892)
PF08979	Domain of unknown function (DUF1894)
PF08988	Protein of unknown function (DUF1895)
PF08989	Domain of unknown function (DUF1896)
PF09005	Domain of unknown function (DUF1897)
PF08953	Domain of unknown function (DUF1899)
PF01579	Domain of unknown function (DUF19)
PF02641	Uncharacterized ACR, COG1993
PF08954	Domain of unknown function (DUF1900)
PF08972	Domain of unknown function (DUF1902)
PF08991	Domain of unknown function (DUF1903)
PF08921	Domain of unknown function (DUF1904)
PF08922	Domain of unknown function (DUF1905)
PF08924	Domain of unknown function (DUF1906)
PF08925	Domain of Unknown Function (DUF1907)
PF08926	Domain of unknown function (DUF1908)
PF08928	Domain of unknown function (DUF1910)
PF08929	Domain of unknown function (DUF1911)
PF08930	Domain of unknown function (DUF1912)
PF08931	Domain of unknown function (DUF1913)
PF08932	Domain of unknown function (DUF1914)
PF08939	Domain of unknown function (DUF1917)
PF08940	Domain of unknown function (DUF1918)
PF08942	Domain of unknown function (DUF1919)
PF02643	Uncharacterized ACR, COG1430
PF09081	Domain of unknown function (DUF1921)
PF09082	Domain of unknown function (DUF1922)
PF09083	Domain of unknown function (DUF1923)
PF09086	Domain of unknown function (DUF1924)
PF09094	Domain of unknown function (DUF1925)
PF09095	Domain of unknown function (DUF1926)
PF09118	Domain of unknown function (DUF1929)
PF09122	Domain of unknown function (DUF1930)
PF09123	Domain of unknown function (DUF1931)
PF09130	Domain of unknown function (DUF1932)
PF09147	Domain of unknown function (DUF1933)
PF09148	Domain of unknown function (DUF1934)
PF09149	Domain of unknown function (DUF1935)
PF09151	Domain of unknown function (DUF1936)
PF09152	Domain of unknown function (DUF1937)
PF09153	Domain of unknown function (DUF1938)
PF09154	Domain of unknown function (DUF1939)
PF09155	Domain of unknown function (DUF1940)
PF09167	Domain of unknown function (DUF1942)
PF09172	Domain of unknown function (DUF1943)
PF09175	Domain of unknown function (DUF1944)
PF09178	Domain of unknown function (DUF1945)
PF09183	Domain of unknown function (DUF1947)
PF09185	Domain of unknown function (DUF1948)
PF09186	Domain of unknown function (DUF1949)
PF09187	Domain of unknown function(DUF1950)
PF09188	Domain of unknown function (DUF1951)
PF09189	Domain of unknown function (DUF1952)
PF09196	Domain of unknown function (DUF1953)
PF09199	Domain of unknown function (DUF1954)
PF09205	Domain of unknown function (DUF1955)
PF09209	Domain of unknown function (DUF1956)
PF09210	Domain of unknown function (DUF1957)
PF09211	Domain of unknown function (DUF1958)
PF09218	Domain of unknown function (DUF1959)
PF09224	Domain of unknown function (DUF1961)
PF09227	Domain of unknown function (DUF1962)
PF09234	Domain of unknown function (DUF1963)
PF09244	Domain of unknown function (DUF1964)
PF09248	Domain of unknown function (DUF1965)
PF09260	Domain of unknown function (DUF1966)
PF09269	Domain of unknown function (DUF1967)
PF09291	Domain of unknown function (DUF1968)
PF09301	Domain of unknown function (DUF1970)
PF09313	Domain of unknown function (DUF1971)
PF09314	Domain of unknown function (DUF1972)
PF09315	Domain of unknown function (DUF1973)
PF09317	Domain of unknown function (DUF1974)
PF09318	Domain of unknown function (DUF1975)
PF09320	Domain of unknown function (DUF1977)
PF09321	Domain of unknown function (DUF1978)
PF09322	Domain of unknown function (DUF1979)
PF09323	Domain of unknown function (DUF1980)
PF09324	Domain of unknown function (DUF1981)
PF09326	Domain of unknown function (DUF1982)
PF09327	Domain of unknown function (DUF1983)
PF09331	Domain of unknown function (DUF1985)
PF09342	Domain of unknown function (DUF1986)
PF09345	Domain of unknown function (DUF1987)
PF09347	Domain of unknown function (DUF1989)
PF09348	Domain of unknown function (DUF1990)
PF09350	Domain of unknown function (DUF1992)
PF09351	Domain of unknown function (DUF1993)
PF09353	Domain of unknown function (DUF1995)
PF09362	Domain of unknown function (DUF1996)
PF09366	Protein of unknown function (DUF1997)
PF09369	Domain of unknown function (DUF1998)
PF09390	Protein of unknown function (DUF1999)
PF09391	Protein of unknown function (DUF2000)
PF09393	Protein of unknown function (DUF2001)
PF09400	Protein of unknown function (DUF2002)
PF09404	Eukaryotic protein of unknown function (DUF2003)
PF09406	Protein of unknown function (DUF2004)
PF09407	Protein of unknown function (DUF2005)
PF09413	Domain of unknown function (DUF2007)
PF09418	Protein of unknown function (DUF2009)
PF09428	Fungal protein of unknown function (DUF2011)
PF09430	Protein of unknown function (DUF2012)
PF09431	Protein of unknown function (DUF2013)
PF09427	Domain of unknown function (DUF2014)
PF09435	Fungal protein of unknown function (DUF2015)
PF09436	Domain of unknown function (DUF2016)
PF09438	Domain of unknown function (DUF2017)
PF09442	Domain of unknown function (DUF2018)
PF09450	Domain of unknown function (DUF2019)
PF02656	Domain of unknown function (DUF202)
PF09449	Domain of unknown function (DUF2020)
PF09633	Protein of unknown function (DUF2023)
PF09630	Domain of unknown function (DUF2024)
PF09634	Protein of unknown function (DUF2025)
PF09641	Protein of unknown function (DUF2026)
PF09640	Domain of unknown function (DUF2027)
PF09667	Domain of unknown function (DUF2028)
PF09594	Protein of unknown function (DUF2029)
PF09592	Protein of unknown function (DUF2031)
PF10356	Protein of unknown function (DUF2034)
PF09724	Uncharacterized conserved protein (DUF2036)
PF10217	Uncharacterized conserved protein (DUF2039)
PF02659	Domain of unknown function DUF
PF09745	Coiled-coil domain-containing protein 55 (DUF2040)
PF09743	Uncharacterized conserved protein (DUF2042)
PF09740	Uncharacterized conserved protein (DUF2043)
PF09741	Uncharacterized conserved protein (DUF2045)
PF09755	Uncharacterized conserved protein H4 (DUF2046)
PF09752	Uncharacterized conserved protein (DUF2048)
PF09738	Double stranded RNA binding protein (DUF2051)
PF09747	Coiled-coil domain containing protein (DUF2052)
PF09767	Predicted membrane protein (DUF2053)
PF10218	Uncharacterized conserved protein (DUF2054)
PF09829	Uncharacterized protein conserved in bacteria (DUF2057)
PF09831	Uncharacterized protein conserved in bacteria (DUF2058)
PF09832	Uncharacterized protein conserved in bacteria (DUF2059)
PF09834	Predicted membrane protein (DUF2061)
PF09835	Uncharacterized protein conserved in bacteria (DUF2062)
PF09836	Uncharacterized protein conserved in bacteria (DUF2063)
PF09837	Uncharacterized protein conserved in bacteria (DUF2064)
PF09838	Uncharacterized protein conserved in bacteria (DUF2065)
PF09839	Uncharacterized protein conserved in bacteria (DUF2066)
PF09840	Uncharacterized protein conserved in archaea (DUF2067)
PF09842	Predicted membrane protein (DUF2069)
PF09843	Predicted membrane protein (DUF2070)
PF09844	Uncharacterized conserved protein (COG2071)
PF09845	Zn-ribbon containing protein (DUF2072)
PF09846	Uncharacterized protein conserved in archaea (DUF2073)
PF09847	Predicted permease (DUF2074)
PF09848	Uncharacterized conserved protein (DUF2075)
PF09849	Uncharacterized protein conserved in bacteria (DUF2076)
PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
PF09852	Predicted membrane protein (DUF2079)
PF02677	Uncharacterized BCR, COG1636
PF09853	Putative transposon-encoded protein (DUF2080)
PF09855	Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)
PF09856	Predicted transcriptional regulator (DUF2083)
PF09857	Uncharacterized protein conserved in bacteria (DUF2084)
PF09858	Predicted membrane protein (DUF2085)
PF09860	Uncharacterized protein conserved in bacteria (DUF2087)
PF09861	Domain of unknown function (DUF2088)
PF09862	Protein of unknown function (DUF2089)
PF09863	Uncharacterized protein conserved in bacteria (DUF2090)
PF09865	Predicted periplasmic protein (DUF2092)
PF09866	Uncharacterized protein conserved in bacteria (DUF2093)
PF09867	Uncharacterized protein conserved in bacteria (DUF2094)
PF09868	Uncharacterized protein conserved in archaea (DUF2095)
PF09869	Uncharacterized protein conserved in archaea (DUF2096)
PF09870	Uncharacterized protein conserved in archaea (DUF2097)
PF09871	Uncharacterized protein conserved in archaea (DUF2098)
PF09872	Uncharacterized protein conserved in archaea (DUF2099)
PF01595	Domain of unknown function DUF21
PF09873	Uncharacterized protein conserved in archaea (DUF2100)
PF09874	Predicted membrane protein (DUF2101)
PF09875	Uncharacterized protein conserved in archaea (DUF2102)
PF09876	Predicted metal-binding protein (DUF2103)
PF09877	Predicted membrane protein (DUF2104)
PF09878	Predicted membrane protein (DUF2105)
PF09879	Predicted membrane protein (DUF2106)
PF09880	Predicted membrane protein (DUF2107)
PF09881	Predicted membrane protein (DUF2108)
PF09882	Predicted membrane protein (DUF2109)
PF02680	Uncharacterized ArCR, COG1888
PF09883	Uncharacterized protein conserved in archaea (DUF2110)
PF09884	Uncharacterized protein conserved in archaea (DUF2111)
PF09885	Uncharacterized protein conserved in archaea (DUF2112)
PF09886	Uncharacterized protein conserved in archaea (DUF2113)
PF09887	Uncharacterized protein conserved in archaea (DUF2114)
PF09888	Uncharacterized protein conserved in archaea (DUF2115)
PF09889	Uncharacterized protein containing a Zn-ribbon (DUF2116)
PF09890	Uncharacterized protein conserved in archaea (DUF2117)
PF09891	Uncharacterized protein conserved in archaea (DUF2118)
PF09892	Uncharacterized protein conserved in archaea (DUF2119)
PF02681	Divergent PAP2 family
PF09893	Uncharacterized protein conserved in archaea (DUF2120)
PF09894	Uncharacterized protein conserved in archaea (DUF2121)
PF09895	RecB-family nuclease (DUF2122)
PF09897	Uncharacterized protein conserved in archaea (DUF2124)
PF09898	Uncharacterized protein conserved in bacteria (DUF2125)
PF09899	Putative amidoligase enzyme (DUF2126)
PF09900	Predicted membrane protein (DUF2127)
PF09902	Uncharacterized protein conserved in bacteria (DUF2129)
PF09903	Uncharacterized protein conserved in bacteria (DUF2130)
PF09905	Uncharacterized conserved protein (DUF2132)
PF09906	Uncharacterized protein conserved in bacteria (DUF2135)
PF09907	Uncharacterized protein conserved in bacteria (DUF2136)
PF09909	Uncharacterized protein conserved in bacteria (DUF2138)
PF09910	Uncharacterized protein conserved in archaea (DUF2139)
PF09911	Uncharacterized protein conserved in bacteria (DUF2140)
PF09912	Uncharacterized protein conserved in bacteria (DUF2141)
PF09913	Predicted membrane protein (DUF2142)
PF09916	Uncharacterized protein conserved in bacteria (DUF2145)
PF10220	Uncharacterized conserved protein (DUF2146)
PF09917	Uncharacterized protein conserved in bacteria (DUF2147)
PF09918	Uncharacterized protein containing a ferredoxin domain (DUF2148)
PF09919	Uncharacterized conserved protein (DUF2149)
PF09920	Uncharacterized protein conserved in archaea (DUF2150)
PF10221	Cell cycle and development regulator
PF10222	Uncharacterized conserved protein (DUF2152)
PF09921	Uncharacterized protein conserved in archaea (DUF2153)
PF09922	Cell wall-active antibiotics response protein (DUF2154)
PF09923	Uncharacterized protein conserved in bacteria (DUF2155)
PF09924	Uncharacterized conserved protein (DUF2156)
PF09925	Predicted membrane protein (DUF2157)
PF09926	Uncharacterized small protein (DUF2158)
PF09928	Predicted small integral membrane protein (DUF2160)
PF09929	Uncharacterized conserved protein (DUF2161)
PF09930	Predicted transporter (DUF2162)
PF09931	Uncharacterized conserved protein (DUF2163)
PF09932	Uncharacterized conserved protein (DUF2164)
PF09933	Predicted small integral membrane protein (DUF2165)
PF09935	Protein of unknown function (DUF2167)
PF09937	Uncharacterized protein conserved in bacteria (DUF2169)
PF02697	Uncharacterized ACR, COG1753
PF09938	Uncharacterized protein conserved in bacteria (DUF2170)
PF09939	Uncharacterized protein conserved in bacteria (DUF2171)
PF09940	Domain of unknown function (DUF2172)
PF09941	Uncharacterized conserved protein (DUF2173)
PF09943	Uncharacterized protein conserved in archaea (DUF2175)
PF09945	Predicted membrane protein (DUF2177)
PF09946	Predicted membrane protein (DUF2178)
PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
PF02698	DUF218 domain
PF09947	Uncharacterized protein conserved in archaea (DUF2180)
PF10223	Uncharacterized conserved protein (DUF2181)
PF09948	Predicted metal-binding integral membrane protein (DUF2182)
PF09949	Uncharacterized conserved protein (DUF2183)
PF09950	Uncharacterized protein conserved in bacteria (DUF2184)
PF09951	Protein of unknown function (DUF2185)
PF09952	Uncharacterized protein conserved in bacteria (DUF2186)
PF09953	Uncharacterized protein conserved in bacteria (DUF2187)
PF09954	Uncharacterized protein conserved in bacteria (DUF2188)
PF09955	Predicted integral membrane protein (DUF2189)
PF09956	Uncharacterized conserved protein (DUF2190)
PF09957	Uncharacterized protein conserved in bacteria (DUF2191)
PF09958	Uncharacterized protein conserved in archaea (DUF2192)
PF09959	Uncharacterized protein conserved in archaea (DUF2193)
PF09960	Uncharacterized protein conserved in bacteria (DUF2194)
PF09961	Uncharacterized protein conserved in bacteria (DUF2195)
PF09962	Uncharacterized conserved protein (DUF2196)
PF09963	Uncharacterized protein conserved in bacteria (DUF2197)
PF09964	Uncharacterized protein conserved in bacteria (DUF2198)
PF09965	Uncharacterized protein conserved in bacteria (DUF2199)
PF01629	Domain of unknown function DUF22
PF02713	Domain of unknown function DUF220
PF09966	Uncharacterized protein conserved in bacteria (DUF2200)
PF09967	VWA-like domain (DUF2201)
PF13203	Putative metallopeptidase domain
PF09968	Uncharacterized protein domain (DUF2202)
PF09969	Uncharacterized conserved protein (DUF2203)
PF09970	Nucleotidyl transferase of unknown function (DUF2204)
PF10224	Predicted coiled-coil protein (DUF2205)
PF09971	Predicted membrane protein (DUF2206)
PF09972	Predicted membrane protein (DUF2207)
PF09973	Predicted membrane protein (DUF2208)
PF09974	Uncharacterized protein conserved in archaea (DUF2209)
PF02714	Domain of unknown function DUF221
PF09979	Uncharacterized protein conserved in bacteria (DUF2213)
PF09980	Predicted membrane protein (DUF2214)
PF10225	Uncharacterized conserved protein (DUF2215)
PF10226	Uncharacterized conserved proteins (DUF2216)
PF10265	Uncharacterized conserved protein (DUF2217)
PF09981	Uncharacterized protein conserved in bacteria (DUF2218)
PF09982	Uncharacterized protein conserved in bacteria (DUF2219)
PF02720	Domain of unknown function (DUF222)
PF09983	Uncharacterized protein conserved in bacteria C-term(DUF2220)
PF09984	Uncharacterized signal transduction histidine kinase domain (DUF2222)
PF09985	Domain of unknown function (DUF2223)
PF09986	Uncharacterized protein conserved in bacteria (DUF2225)
PF09987	Uncharacterized protein conserved in archaea (DUF2226)
PF09988	Uncharacterized metal-binding protein (DUF2227)
PF10228	Uncharacterised conserved protein (DUF2228)
PF09989	CoA enzyme activase uncharacterised domain (DUF2229)
PF02721	Domain of unknown function DUF223
PF09990	Predicted membrane protein (DUF2231)
PF09991	Predicted membrane protein (DUF2232)
PF09992	Predicted periplasmic protein (DUF2233)
PF09994	Uncharacterized alpha/beta hydrolase domain (DUF2235)
PF09995	Uncharacterized protein conserved in bacteria (DUF2236)
PF09996	Uncharacterized protein conserved in bacteria (DUF2237)
PF09997	Predicted membrane protein (DUF2238)
PF09998	Uncharacterized protein conserved in bacteria (DUF2239)
PF09999	Uncharacterized protein conserved in archaea (DUF2240)
PF10001	Uncharacterized protein conserved in bacteria (DUF2242)
PF10002	Predicted membrane protein (DUF2243)
PF10003	Integral membrane protein (DUF2244)
PF10229	Uncharacterized conserved protein (DUF2246)
PF10004	Uncharacterized protein conserved in bacteria (DUF2247)
PF10005	Uncharacterized protein conserved in bacteria (DUF2248)
PF10006	Uncharacterized conserved protein (DUF2249)
PF10007	Uncharacterized protein conserved in archaea (DUF2250)
PF10008	Uncharacterized protein conserved in bacteria (DUF2251)
PF10009	Uncharacterized protein conserved in bacteria (DUF2252)
PF10011	Predicted membrane protein (DUF2254)
PF10012	Uncharacterized protein conserved in bacteria (DUF2255)
PF10013	Uncharacterized protein conserved in bacteria (DUF2256)
PF10015	Uncharacterized protein conserved in archaea (DUF2258)
PF10016	Predicted secreted protein (DUF2259)
PF02890	Borrelia family of unknown function DUF226
PF10020	Uncharacterized protein conserved in bacteria (DUF2262)
PF10021	Uncharacterized protein conserved in bacteria (DUF2263)
PF10022	Uncharacterized protein conserved in bacteria (DUF2264)
PF10023	Predicted aminopeptidase (DUF2265)
PF10025	Uncharacterized conserved protein (DUF2267)
PF10026	Predicted Zn-dependent protease (DUF2268)
PF10027	Predicted integral membrane protein (DUF2269)
PF10028	Predicted integral membrane protein (DUF2270)
PF10029	Predicted periplasmic protein (DUF2271)
PF10030	Uncharacterized protein conserved in bacteria (DUF2272)
PF10031	Small integral membrane protein (DUF2273)
PF10038	Protein of unknown function (DUF2274)
PF10039	Predicted integral membrane protein (DUF2275)
PF10040	Uncharacterized conserved protein (DUF2276)
PF10041	Uncharacterized conserved protein (DUF2277)
PF10042	Uncharacterized conserved protein (DUF2278)
PF10043	Predicted periplasmic lipoprotein (DUF2279)
PF02989	Lyme disease proteins of unknown function
PF10045	Uncharacterized conserved protein (DUF2280)
PF10047	Protein of unknown function (DUF2281)
PF10048	Predicted integral membrane protein (DUF2282)
PF10049	Protein of unknown function (DUF2283)
PF10050	Predicted metal-binding protein (DUF2284)
PF10074	Uncharacterized conserved protein (DUF2285)
PF10051	Uncharacterized protein conserved in archaea (DUF2286)
PF10052	Protein of unknown function (DUF2288)
PF02995	Protein of unknown function (DUF229)
PF10053	Uncharacterized conserved protein (DUF2290)
PF10054	Predicted periplasmic lipoprotein (DUF2291)
PF10055	Uncharacterized small protein (DUF2292)
PF10056	Uncharacterized conserved protein (DUF2293)
PF10057	Uncharacterized conserved protein (DUF2294)
PF10058	Predicted integral membrane metal-binding protein (DUF2296)
PF10060	Uncharacterized membrane protein (DUF2298)
PF10061	Uncharacterized conserved protein (DUF2299)
PF03003	Poxvirus proteins of unknown function
PF10062	Predicted secreted protein (DUF2300)
PF10063	Uncharacterized integral membrane protein (DUF2301)
PF10065	Uncharacterized conserved protein (DUF2303)
PF10066	Uncharacterized conserved protein (DUF2304)
PF10230	Uncharacterised conserved protein (DUF2305)
PF10067	Predicted membrane protein (DUF2306)
PF10070	Uncharacterized protein conserved in bacteria (DUF2309)
PF10071	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
PF10073	Uncharacterized protein conserved in bacteria (DUF2312)
PF10076	Uncharacterized protein conserved in bacteria (DUF2313)
PF10077	Uncharacterized protein conserved in bacteria (DUF2314)
PF10231	Uncharacterised conserved protein (DUF2315)
PF10078	Uncharacterized protein conserved in bacteria (DUF2316)
PF10079	Uncharacterized protein conserved in bacteria (DUF2317)
PF10080	Predicted membrane protein (DUF2318)
PF10082	Uncharacterized protein conserved in bacteria (DUF2320)
PF10083	Uncharacterized protein conserved in bacteria (DUF2321)
PF10084	Uncharacterized protein conserved in bacteria (DUF2322)
PF10086	Putative membrane peptidase family (DUF2324)
PF10087	Uncharacterized protein conserved in bacteria (DUF2325)
PF10088	Uncharacterized protein conserved in bacteria (DUF2326)
PF10090	Uncharacterized protein conserved in bacteria (DUF2328)
PF10092	Uncharacterized protein conserved in bacteria (DUF2330)
PF10093	Uncharacterized protein conserved in bacteria (DUF2331)
PF10094	Uncharacterized protein conserved in bacteria (DUF2332)
PF10095	Uncharacterized protein conserved in bacteria (DUF2333)
PF10096	Uncharacterized protein conserved in bacteria (DUF2334)
PF10097	Predicted membrane protein (DUF2335)
PF10098	Uncharacterized protein conserved in bacteria (DUF2336)
PF10100	Uncharacterized protein conserved in bacteria (DUF2338)
PF10101	Predicted membrane protein (DUF2339)
PF03008	Archaea bacterial proteins of unknown function
PF10209	Uncharacterized conserved protein (DUF2340)
PF10102	Domain of unknown function (DUF2341)
PF10103	Uncharacterised conserved protein (DUF2342)
PF10105	Uncharacterized protein conserved in bacteria (DUF2344)
PF10106	Uncharacterized protein conserved in bacteria (DUF2345)
PF09803	Uncharacterized conserved protein (DUF2346)
PF09804	Uncharacterized conserved protein (DUF2347)
PF09807	Uncharacterized conserved protein (DUF2348)
PF09817	Uncharacterized conserved protein (DUF2352)
PF09789	Uncharacterized coiled-coil protein (DUF2353)
PF10189	Conserved protein (DUF2356)
PF09823	Domain of unknown function (DUF2357)
PF10184	Uncharacterized conserved protein (DUF2358)
PF10151	Uncharacterised conserved protein (DUF2359)
PF03057	Protein of unknown function
PF10152	Predicted coiled-coil domain-containing protein (DUF2360)
PF10153	Uncharacterised conserved protein (DUF2361)
PF10154	Uncharacterized conserved protein (DUF2362)
PF10155	Uncharacterized conserved protein (DUF2363)
PF10157	Uncharacterized conserved protein (DUF2365)
PF10171	Uncharacterised conserved protein (DUF2366)
PF10164	Uncharacterized conserved protein (DUF2367)
PF10166	Uncharacterised conserved protein (DUF2368)
PF10179	Uncharacterised conserved protein (DUF2369)
PF03072	MG032/MG096/MG288 family 1
PF10176	Protein of unknown function (DUF2370)
PF10177	Uncharacterised conserved protein (DUF2371)
PF10178	Uncharacterised conserved protein (DUF2372)
PF10180	Uncharacterised conserved protein (DUF2373)
PF09574	Protein  of unknown function (Duf2374)
PF09558	Protein of unknown function (DUF2375)
PF09550	Conserved hypothetical phage protein (DUF2376)
PF09536	Protein of unknown function (DUF2378)
PF09543	Protein of unknown function (DUF2379)
PF09533	Predicted lipoprotein of unknown function (DUF2380)
PF09544	Protein of unknown function (DUF2381)
PF09557	Domain of unknown function (DUF2382)
PF09537	Domain of unknown function (DUF2383)
PF09722	Protein of unknown function (DUF2384)
PF09539	Protein of unknown function (DUF2385)
PF09526	Probable metal-binding protein (DUF2387)
PF09498	Protein of unknown function (DUF2388)
PF09493	Tryptophan-rich protein (DUF2389)
PF03080	Domain of unknown function (DUF239)
PF09523	Protein of unknown function (DUF2390)
PF09622	Putative integral membrane protein (DUF2391)
PF10288	Protein of unknown function (DUF2392)
PF09624	Protein of unknown function (DUF2393)
PF09654	Protein of unknown function (DUF2396)
PF09660	Protein of unknown function (DUF2397)
PF09661	Protein of unknown function (DUF2398)
PF09664	Protein of unknown function C-terminus (DUF2399)
PF03086	MG032/MG096/MG288 family 2
PF09674	Protein of unknown function (DUF2400)
PF10287	Putative TOS1-like glycosyl hydrolase (DUF2401)
PF10290	Glycine-rich protein domain (DUF2403)
PF10296	Putative integral membrane protein conserved region (DUF2404)
PF10293	Domain of unknown function (DUF2405)
PF10295	Uncharacterised protein (DUF2406)
PF10302	DUF2407 ubiquitin-like domain
PF13373	DUF2407 C-terminal domain
PF10303	Protein of unknown function (DUF2408)
PF03087	Arabidopsis protein of unknown function
PF10307	Hypothetical protein (DUF2410)
PF10304	Domain of unknown function (DUF2411)
PF10310	Protein of unknown function (DUF2413)
PF10309	Protein of unknown function (DUF2414)
PF10313	Uncharacterised protein domain (DUF2415)
PF10315	Protein of unknown function (DUF2416)
PF10329	Region of unknown function (DUF2417)
PF10332	Protein of unknown function (DUF2418)
PF10343	Protein of unknown function (DUF2419)
PF10336	Protein of unknown function (DUF2420)
PF10334	Protein of unknown function (DUF2421)
PF10337	Protein of unknown function (DUF2422)
PF10338	Protein of unknown function (DUF2423)
PF10340	Protein of unknown function (DUF2424)
PF10348	Domain of unknown function (DUF2427)
PF10350	Putative death-receptor fusion protein (DUF2428)
PF03103	Domain of unknown function (DUF243)
PF10353	Protein of unknown function (DUF2430)
PF10354	Domain of unknown function (DUF2431)
PF10360	Protein of unknown function (DUF2433)
PF10361	Protein of unknown function (DUF2434)
PF10363	Protein of unknown function (DUF2435)
PF10365	Domain of unknown function (DUF2436)
PF10370	Domain of unknown function (DUF2437)
PF10382	Protein of unknown function (DUF2439)
PF03112	Uncharacterized protein family (ORF7) DUF
PF10386	Protein of unknown function (DUF2441)
PF10387	Protein of unknown function (DUF2442)
PF10398	Protein of unknown function (DUF2443)
PF10476	Protein of unknown function C-terminus (DUF2448)
PF10475	Protein of unknown function N-terminal domain (DUF2450)
PF10474	Protein of unknown function C-terminus (DUF2451)
PF10504	Protein of unknown function (DUF2452)
PF10507	Protein of unknown function (DUF2453)
PF10521	Protein of unknown function (DUF2454)
PF10445	Protein of unknown function (DUF2456)
PF10446	Protein of unknown function (DUF2457)
PF10454	Protein of unknown function (DUF2458)
PF09601	Protein of unknown function (DUF2459)
PF09343	Conserved hypothetical protein 2217 (DUF2460)
PF09365	Conserved hypothetical protein (DUF2461)
PF09495	Protein of unknown function (DUF2462)
PF09591	Protein of unknown function (DUF2463)
PF10240	Protein of unknown function (DUF2464)
PF10239	Protein of unknown function (DUF2465)
PF10611	Protein of unknown function (DUF2469)
PF03140	Plant protein of unknown function
PF10615	Protein of unknown function (DUF2470)
PF10616	Protein of unknown function (DUF2471)
PF10617	Protein of unknown function (DUF2474)
PF10629	Protein of unknown function (DUF2475)
PF10630	Protein of unknown function (DUF2476)
PF10631	Protein of unknown function (DUF2477)
PF10649	Protein of unknown function (DUF2478)
PF10651	Domain of unknown function (DUF2479)
PF10652	Protein of unknown function (DUF2480)
PF10654	Protein of unknown function (DUF2481)
PF10655	Hypothetical protein of unknown function (DUF2482)
PF10656	Hypothetical protein of unknown function (DUF2483)
PF10658	Protein of unknown function (DUF2484)
PF10667	Protein of unknown function (DUF2486)
PF10673	Protein of unknown function (DUF2487)
PF10675	Protein of unknown function (DUF2489)
PF03158	Multigene family 530 protein
PF10677	Protein of unknown function (DUF2490)
PF10679	Protein of unknown function (DUF2491)
PF10678	Protein of unknown function (DUF2492)
PF10686	Protein of unknown function (DUF2493)
PF10689	Protein of unknown function (DUF2496)
PF10691	Protein of unknown function (DUF2497)
PF10692	Protein of unknown function (DUF2498)
PF10693	Protein of unknown function (DUF2499)
PF10694	Protein of unknown function (DUF2500)
PF10696	Protein of unknown function (DUF2501)
PF10697	Protein of unknown function (DUF2502)
PF10698	Protein of unknown function (DUF2505)
PF10702	Protein of unknown function (DUF2507)
PF10704	Protein of unknown function (DUF2508)
PF10713	Protein of unknown function (DUF2509)
PF10708	Protein of unknown function (DUF2510)
PF10709	Protein of unknown function (DUF2511)
PF10710	Protein of unknown function (DUF2512)
PF10711	Hypothetical protein (DUF2513)
PF10721	Protein of unknown function (DUF2514)
PF10720	Protein of unknown function (DUF2515)
PF10724	Protein of unknown function (DUF2516)
PF10725	Protein of unknown function (DUF2517)
PF10726	Protein of function (DUF2518)
PF10728	Domain of unknown function (DUF2520)
PF10730	Protein of unknown function (DUF2521)
PF10747	Protein of unknown function (DUF2522)
PF10734	Protein of unknown function (DUF2523)
PF10732	Protein of unknown function (DUF2524)
PF10733	Protein of unknown function (DUF2525)
PF10735	Protein of unknown function (DUF2526)
PF10736	Protein of unknown function (DUF2627)
PF10800	Protein of unknown function (DUF2528)
PF10740	Protein of unknown function (DUF2529)
PF10745	Protein of unknown function (DUF2530)
PF10748	Protein of unknown function (DUF2531)
PF10811	Protein of unknown function (DUF2532)
PF10752	Protein of unknown function (DUF2533)
PF10749	Protein of unknown function (DUF2534)
PF10751	Protein of unknown function (DUF2535)
PF10750	Protein of unknown function (DUF2536)
PF10801	Protein of unknown function (DUF2537)
PF10804	Protein of unknown function (DUF2538)
PF10802	Protein of unknown function (DUF2540)
PF10807	Protein of unknown function (DUF2541)
PF10808	Protein of unknown function (DUF2542)
PF10820	Protein of unknown function (DUF2543)
PF11245	Protein of unknown function (DUF2544)
PF10810	Protein of unknown function (DUF2545)
PF10818	Protein of unknown function (DUF2547)
PF10739	Protein of unknown function (DUF2550)
PF10826	Protein of unknown function (DUF2551)
PF10827	Protein of unknown function (DUF2552)
PF10830	Protein of unknown function (DUF2553)
PF10829	Protein of unknown function (DUF2554)
PF10742	Protein of unknown function (DUF2555)
PF10831	Protein of unknown function (DUF2556)
PF10832	Protein of unknown function (DUF2559)
PF10834	Protein of unknown function (DUF2560)
PF10812	Protein of unknown function (DUF2561)
PF10814	Protein of unknown function (DUF2562)
PF10817	Protein of unknown function (DUF2563)
PF10819	Protein of unknown function (DUF2564)
PF10753	Protein of unknown function (DUF2566)
PF10821	Protein of unknown function (DUF2567)
PF10823	Protein of unknown function (DUF2568)
PF10754	Protein of unknown function (DUF2569)
PF03192	Pyrococcus protein of unknown function, DUF257
PF10828	Protein of unknown function (DUF2570)
PF10833	Protein of unknown function (DUF2572)
PF10835	Protein of unknown function (DUF2573)
PF10836	Protein of unknown function (DUF2574)
PF10837	Protein of unknown function (DUF2575)
PF10845	Protein of unknown function (DUF2576)
PF10844	Protein of unknown function (DUF2577)
PF10843	Protein of unknown function (DUF2578)
PF03193	Protein of unknown function, DUF258
PF10824	Protein of unknown function (DUF2580)
PF10771	Protein of unknown function (DUF2582)
PF10762	Protein of unknown function (DUF2583)
PF10763	Protein of unknown function (DUF2584)
PF10755	Protein of unknown function (DUF2585)
PF10758	Protein of unknown function (DUF2586)
PF10759	Protein of unknown function (DUF2587)
PF11655	Protein of unknown function (DUF2589)
PF10761	Protein of unknown function (DUF2590)
PF10765	Protein of unknown function (DUF2591)
PF10766	Protein of unknown function (DUF2592)
PF10767	Protein of unknown function (DUF2593)
PF10769	Protein of unknown function (DUF2594)
PF10772	Protein of unknown function (DUF2597)
PF10783	Protein of unknown function (DUF2599)
PF03195	Protein of unknown function DUF260
PF10776	Protein of unknown function (DUF2600)
PF10782	Protein of unknown function (DUF2602)
PF10788	Protein of unknown function (DUF2603)
PF10790	Protein of Unknown function (DUF2604)
PF10792	Protein of unknown function (DUF2605)
PF10794	Protein of unknown function (DUF2606)
PF10795	Protein of unknown function (DUF2607)
PF11019	Protein of unknown function (DUF2608)
PF03196	Protein of unknown function, DUF261
PF11020	Domain of unknown function (DUF2610)
PF11022	Protein of unknown function (DUF2611)
PF11041	Protein of unknown function (DUF2612)
PF11021	Protein of unknown function (DUF2613)
PF11023	Protein of unknown function (DUF2614)
PF11027	Protein of unknown function (DUF2615)
PF11077	Protein of unknown function (DUF2616)
PF10936	Protein of unknown function DUF2617
PF10940	Protein of unknown function (DUF2618)
PF10942	Protein of unknown function (DUF2619)
PF03235	Protein of unknown function DUF262
PF10941	Protein of unknown function DUF2620
PF11084	Protein of unknown function (DUF2621)
PF11080	Protein of unknown function (DUF2622)
PF11115	Protein of unknown function (DUF2623)
PF11116	Protein of unknown function (DUF2624)
PF10946	Protein of unknown function DUF2625
PF11117	Protein of unknown function (DUF2626)
PF11118	Protein of unknown function (DUF2627)
PF10947	Protein of unknown function (DUF2628)
PF10945	Protein of unknown function (DUF2629)
PF10944	Protein of unknown function (DUF2630)
PF10939	Protein of unknown function (DUF2631)
PF10943	Protein of unknown function (DUF2632)
PF11119	Protein of unknown function (DUF2633)
PF10934	Protein of unknown function (DUF2634)
PF10948	Protein of unknown function (DUF2635)
PF11120	Protein of unknown function (DUF2636)
PF10935	Protein of unknown function (DUF2637)
PF10937	Protein of unknown function (DUF2638)
PF11121	Protein of unknown function (DUF2639)
PF10842	Protein of unknown function (DUF2642)
PF10841	Protein of unknown function (DUF2644)
PF10840	Protein of unknown function (DUF2645)
PF10839	Protein of unknown function (DUF2647)
PF10855	Protein of unknown function (DUF2648)
PF10854	Protein of unknown function (DUF2649)
PF10853	Protein of unknown function (DUF2650)
PF10852	Protein of unknown function (DUF2651)
PF10851	Protein of unknown function (DUF2652)
PF10850	Protein of unknown function (DUF2653)
PF10849	Protein of unknown function (DUF2654)
PF10848	Protein of unknown function (DUF2655)
PF10847	Protein of unknown function (DUF2656)
PF10858	Protein of unknown function (DUF2659)
PF10859	Protein of unknown function (DUF2660)
PF10860	Protein of unknown function (DUF2661)
PF10864	Protein of unknown function (DUF2663)
PF10867	Protein of unknown function (DUF2664)
PF11654	Protein of unknown function (DUF2665)
PF10869	Protein of unknown function (DUF2666)
PF10868	Protein of unknown function (DUF2667)
PF10873	Protein of unknown function (DUF2668)
PF10876	Protein of unknown function (DUF2669)
PF03268	Caenorhabditis protein of unknown function, DUF267
PF10875	Protein of unknown function (DUF2670)
PF10877	Protein of unknown function (DUF2671)
PF10878	Protein of unknown function (DUF2672)
PF10880	Protein of unknown function (DUF2673)
PF10879	Protein of unknown function (DUF2674)
PF11247	Protein of unknown function (DUF2675)
PF10838	Protein of unknown function (DUF2677)
PF10856	Protein of unknown function (DUF2678)
PF03269	Caenorhabditis protein of unknown function, DUF268
PF10925	Protein of unknown function (DUF2680)
PF10883	Protein of unknown function (DUF2681)
PF10909	Protein of unknown function (DUF2682)
PF10884	Protein of unknown function (DUF2683)
PF10885	Protein of unknown function (DUF2684)
PF10886	Protein of unknown function (DUF2685)
PF10887	Protein of unknown function (DUF2686)
PF10892	Protein of unknown function (DUF2688)
PF10894	Protein of unknown function (DUF2689)
PF03270	Protein of unknown function, DUF269
PF10901	Protein of unknown function (DUF2690)
PF10903	Protein of unknown function (DUF2691)
PF10902	Protein of unknown function (DUF2693)
PF10904	Protein of unknown function (DUF2694)
PF10905	Protein of unknown function (DUF2695)
PF10906	Protein of unknown function (DUF2697)
PF10912	Protein of unknown function (DUF2700)
PF10857	Protein of unknown function (DUF2701)
PF10863	Protein of unknown function (DUF2702)
PF10865	Domain of unknown function (DUF2703)
PF10866	Protein of unknown function (DUF2704)
PF10920	Protein of unknown function (DUF2705)
PF10913	Protein of unknown function (DUF2706)
PF10917	Protein of unknown function (DUF2708)
PF10915	Protein of unknown function (DUF2709)
PF10921	Protein of unknown function (DUF2710)
PF10924	Protein of unknown function (DUF2711)
PF10916	Protein of unknown function (DUF2712)
PF10897	Protein of unknown function (DUF2713)
PF10896	Protein of unknown function (DUF2714)
PF10895	Protein of unknown function (DUF2715)
PF10898	Protein of unknown function (DUF2716)
PF10911	Protein of unknown function (DUF2717)
PF10918	Protein of unknown function (DUF2718)
PF10891	Protein of unknown function (DUF2719)
PF03312	Protein of unknown function (DUF272)
PF11026	Protein of unknown function (DUF2721)
PF10846	Protein of unknown function (DUF2722)
PF11028	Protein of unknown function (DUF2723)
PF10893	Protein of unknown function (DUF2724)
PF10881	Protein of unknown function (DUF2726)
PF10870	Protein of unknown function (DUF2729)
PF03314	Protein of unknown function, DUF273
PF10805	Protein of unknown function (DUF2730)
PF10806	Protein of unknown function (DUF2731)
PF10809	Protein of unknown function (DUF2732)
PF10813	Protein of unknown function (DUF2733)
PF10931	Protein of unknown function (DUF2735)
PF10930	Protein of unknown function (DUF2737)
PF10927	Protein of unknown function (DUF2738)
PF10872	Protein of unknown function (DUF2740)
PF10890	Protein of unknown function (DUF2741)
PF10888	Protein of unknown function (DUF2742)
PF10899	Protein of unknown function (DUF2743)
PF10910	Protein of unknown function (DUF2744)
PF10922	Protein of unknown function (DUF2745)
PF10874	Protein of unknown function (DUF2746)
PF10871	Protein of unknown function (DUF2748)
PF10907	Protein of unknown function (DUF2749)
PF11042	Protein of unknown function (DUF2750)
PF10825	Protein of unknown function (DUF2752)
PF10952	Protein of unknown function (DUF2753)
PF10953	Protein of unknown function (DUF2754)
PF10954	Protein of unknown function (DUF2755)
PF10956	Protein of unknown function (DUF2756)
PF10955	Protein of unknown function (DUF2757)
PF10957	Protein of unknown function (DUF2758)
PF10958	Protein of unknown function (DUF2759)
PF03434	DUF276
PF10816	Domain of unknown function (DUF2760)
PF10959	Protein of unknown function (DUF2761)
PF10960	Protein of unknown function (DUF2762)
PF10961	Protein of unknown function (DUF2763)
PF10962	Protein of unknown function (DUF2764)
PF10963	Protein of unknown function (DUF2765)
PF10964	Protein of unknown function (DUF2766)
PF10965	Protein of unknown function (DUF2767)
PF10966	Protein of unknown function (DUF2768)
PF10967	Protein of unknown function (DUF2769)
PF10968	Protein of unknown function (DUF2770)
PF10969	Protein of unknown function (DUF2771)
PF10970	Protein of unknown function (DUF2772)
PF10971	Protein of unknown function (DUF2773)
PF11242	Protein of unknown function (DUF2774)
PF10950	Protein of unknown function (DUF2775)
PF10951	Protein of unknown function (DUF2776)
PF10949	Protein of unknown function (DUF2777)
PF10908	Protein of unknown function (DUF2778)
PF11074	Domain of unknown function(DUF2779)
PF11075	Protein of unknown function VcgC/VcgE (DUF2780)
PF10914	Protein of unknown function (DUF2781)
PF11191	Protein of unknown function (DUF2782)
PF10932	Protein of unknown function (DUF2783)
PF10861	Protein of Unknown function (DUF2784)
PF10978	Protein of unknown function (DUF2785)
PF10979	Protein of unknown function (DUF2786)
PF10980	Protein of unknown function (DUF2787)
PF10981	Protein of unknown function (DUF2788)
PF10982	Protein of unknown function (DUF2789)
PF10976	Protein of unknown function (DUF2790)
PF10923	P-loop Domain of unknown function (DUF2791)
PF10983	Protein of unknown function (DUF2793)
PF10984	Protein of unknown function (DUF2794)
PF11387	Protein of unknown function (DUF2795)
PF10986	Protein of unknown function (DUF2796)
PF10977	Protein of unknown function (DUF2797)
PF11391	Protein of unknown function (DUF2798)
PF10973	Protein of unknown function (DUF2799)
PF10926	Protein of unknown function (DUF2800)
PF10975	Protein of unknown function (DUF2802)
PF10972	Protein of unknown function (DUF2803)
PF10974	Protein of unknown function (DUF2804)
PF10985	Protein of unknown function (DUF2805)
PF10987	Protein of unknown function (DUF2806)
PF10988	Protein of unknown function (DUF2807)
PF10989	Protein of unknown function (DUF2808)
PF10990	Protein of unknown function (DUF2809)
PF03436	Domain of unknown function (DUF281)
PF10928	Protein of unknown function (DUF2810)
PF10929	Protein of unknown function (DUF2811)
PF11193	Protein of unknown function (DUF2812)
PF11398	Protein of unknown function (DUF2813)
PF10991	Protein of unknown function (DUF2815)
PF10992	Protein of unknown function (DUF2816)
PF10994	Protein of unknown function (DUF2817)
PF10993	Protein of unknown function (DUF2818)
PF10995	Protein of unknown function (DUF2819)
PF03380	Caenorhabditis protein of unknown function, DUF282
PF11034	Protein of unknown function (DUF2823)
PF11039	Protein of unknown function (DUF2824)
PF11442	Protein of unknown function (DUF2826)
PF10933	Protein of unknown function (DUF2827)
PF11443	Domain of unknown function (DUF2828)
PF11195	Protein of unknown function (DUF2829)
PF11125	Protein of unknown function (DUF2830)
PF11090	Protein of unknown function (DUF2833)
PF11196	Protein of unknown function (DUF2834)
PF11197	Protein of unknown function (DUF2835)
PF10997	Protein of unknown function (DUF2837)
PF10998	Protein of unknown function (DUF2838)
PF10999	Protein of unknown function (DUF2839)
PF11000	Protein of unknown function (DUF2840)
PF11001	Protein of unknown function (DUF2841)
PF11003	Protein of unknown function (DUF2842)
PF11005	Protein of unknown function (DUF2844)
PF11006	Protein of unknown function (DUF2845)
PF11008	Protein of unknown function (DUF2846)
PF11009	Protein of unknown function (DUF2847)
PF11010	Protein of unknown function (DUF2848)
PF11011	Protein of unknown function (DUF2849)
PF03382	Mycoplasma protein of unknown function, DUF285
PF11012	Protein of unknown function (DUF2850)
PF11013	Protein of unknown function (DUF2851)
PF11014	Protein of unknown function (DUF2852)
PF11015	Protein of unknown function (DUF2853)
PF11016	Protein of unknown function (DUF2854)
PF11017	Protein of unknown function (DUF2855)
PF11043	Protein of unknown function (DUF2856)
PF11198	Protein of unknown function (DUF2857)
PF11072	Protein of unknown function (DUF2859)
PF11059	Protein of unknown function (DUF2860)
PF11060	Protein of unknown function (DUF2861)
PF11061	Protein of unknown function (DUF2862)
PF11062	Protein of unknown function (DUF2863)
PF11064	Protein of unknown function (DUF2865)
PF11065	Protein of unknown function (DUF2866)
PF11066	Protein of unknown function (DUF2867)
PF11067	Protein of unknown function (DUF2868)
PF03384	Drosophila protein of unknown function, DUF287
PF11069	Protein of unknown function (DUF2870)
PF11070	Protein of unknown function (DUF2871)
PF11071	Protein of unknown function (DUF2872)
PF11395	Protein of unknown function (DUF2873)
PF11396	Protein of unknown function (DUF2874)
PF11394	Protein of unknown function (DUF2875)
PF11392	Protein of unknown function (DUF2877)
PF11086	Protein of unknown function (DUF2878)
PF03385	Protein of unknown function, DUF288
PF11082	Protein of unknown function (DUF2880)
PF11087	Protein of unknown function (DUF2881)
PF11097	Protein of unknown function (DUF2883)
PF11101	Protein of unknown function (DUF2884)
PF11103	Protein of unknown function (DUF2887)
PF11135	Protein of unknown function (DUF2888)
PF11136	Protein of unknown function (DUF2889)
PF11081	Protein of unknown function (DUF2890)
PF11199	Protein of unknown function (DUF2891)
PF11127	Protein of unknown function (DUF2892)
PF11459	Protein of unknwon function (DUF2893)
PF11445	Protein of unknown function (DUF2894)
PF11444	Protein of unknown function (DUF2895)
PF11446	Protein of unknown function (DUF2897)
PF11449	Protein of unknown function (DUF2899)
PF01724	Domain of unknown function DUF29
PF01060	Transthyretin-like family
PF11146	Protein of unknown function (DUF2905)
PF11137	Protein of unknown function (DUF2909)
PF11139	Protein of unknown function (DUF2910)
PF11138	Protein of unknown function (DUF2911)
PF11140	Protein of unknown function (DUF2913)
PF11141	Protein of unknown function (DUF2914)
PF11142	Protein of unknown function (DUF2917)
PF11143	Protein of unknown function (DUF2919)
PF11144	Protein of unknown function (DUF2920)
PF11145	Protein of unknown function (DUF2921)
PF11148	Protein of unknown function (DUF2922)
PF11149	Protein of unknown function (DUF2924)
PF11150	Protein of unknown function (DUF2927)
PF11151	Protein of unknown function (DUF2929)
PF11152	Protein of unknown function (DUF2930)
PF11153	Protein of unknown function (DUF2931)
PF11666	Protein of unknown function (DUF2933)
PF11154	Protein of unknown function (DUF2934)
PF11155	Domain of unknown function (DUF2935)
PF11157	Protein of unknown function (DUF2937)
PF11158	Protein of unknown function (DUF2938)
PF11159	Protein of unknown function (DUF2939)
PF03445	Putative nucleotidyltransferase DUF294
PF11161	Protein of unknown function (DUF2946)
PF11160	Protein of unknown function (DUF2945)
PF11162	Protein of unknown function (DUF2946)
PF11163	Protein of unknown function (DUF2947)
PF11164	Protein of unknown function (DUF2948)
PF11165	Protein of unknown function (DUF2949)
PF10335	Putative nucleotidyltransferase substrate binding domain
PF03478	Protein of unknown function (DUF295)
PF11453	Protein of unknown function (DUF2950)
PF11166	Protein of unknown function (DUF2951)
PF11167	Protein of unknown function (DUF2953)
PF11168	Protein of unknown function (DUF2955)
PF11169	Protein of unknown function (DUF2956)
PF11170	Protein of unknown function (DUF2957)
PF11171	Protein of unknown function (DUF2958)
PF11172	Protein of unknown function (DUF2959)
PF03479	Domain of unknown function (DUF296)
PF11173	Protein of unknown function (DUF2960)
PF11175	Protein of unknown function (DUF2961)
PF11176	Protein of unknown function (DUF2962)
PF11178	Protein of unknown function (DUF2963)
PF11177	Protein of unknown function (DUF2964)
PF11179	Protein of unknown function (DUF2967)
PF11180	Protein of unknown function (DUF2968)
PF11184	Protein of unknown function (DUF2969)
PF11174	Protein of unknown function (DUF2970)
PF11185	Protein of unknown function (DUF2971)
PF11186	Protein of unknown function (DUF2972)
PF11189	Protein of unknown function (DUF2973)
PF11187	Protein of unknown function (DUF2974)
PF11188	Protein of unknown function (DUF2975)
PF11190	Protein of unknown function (DUF2976)
PF11192	Protein of unknown function (DUF2977)
PF11200	Protein of unknown function (DUF2981)
PF11201	Protein of unknown function (DUF2982)
PF11203	Protein of unknown function (DUF2984)
PF11204	Protein of unknown function (DUF2985)
PF11661	Protein of unknown function (DUF2986)
PF11205	Protein of unknown function (DUF2987)
PF11207	Protein of unknown function (DUF2989)
PF11693	Protein of unknown function (DUF2990)
PF11208	Protein of unknown function (DUF2992)
PF11209	Protein of unknown function (DUF2993)
PF11210	Protein of unknown function (DUF2996)
PF11211	Protein of unknown function (DUF2997)
PF11212	Protein of unknown function (DUF2999)
PF11452	Protein of unknown function (DUF3000)
PF11448	Protein of unknown function (DUF3005)
PF11213	Protein of unknown function (DUF3006)
PF11460	Protein of unknown function (DUF3007)
PF11450	Protein of unknwon function (DUF3008)
PF11215	Protein of unknown function (DUF3010)
PF11218	Protein of unknown function (DUF3011)
PF11216	Protein of unknown function (DUF3012)
PF11217	Protein of unknown function (DUF3013)
PF11219	Protein of unknown function (DUF3014)
PF11220	Protein of unknown function (DUF3015)
PF11454	Protein of unknown function (DUF3016)
PF11222	Protein of unknown function (DUF3017)
PF11455	Protein  of unknown function (DUF3018)
PF11456	Protein of unknown function (DUF3019)
PF03625	Domain of unknown function DUF302
PF11223	Protein of unknown function (DUF3020)
PF11457	Protein of unknown function (DUF3021)
PF11226	Protein of unknown function (DUF3022)
PF11224	Protein of unknown function (DUF3023)
PF11225	Protein of unknown function (DUF3024)
PF11227	Protein of unknown function (DUF3025)
PF11228	Protein of unknown function (DUF3027)
PF11229	Protein of unknown function (DUF3028)
PF11230	Protein of unknown function (DUF3029)
PF03629	Domain of unknown function (DUF303)
PF11231	Protein of unknown function (DUF3034)
PF11233	Protein of unknown function (DUF3035)
PF11236	Protein of unknown function (DUF3037)
PF11237	Protein of unknown function (DUF3038)
PF11238	Protein of unknown function (DUF3039)
PF11239	Protein of unknown function (DUF3040)
PF11240	Protein of unknown function (DUF3042)
PF11241	Protein of unknown function (DUF3043)
PF11243	Protein of unknown function (DUF3045)
PF11248	Protein of unknown function (DUF3046)
PF11249	Protein of unknown function (DUF3047)
PF11258	Protein of unknown function (DUF3048)
PF11250	Protein of unknown function (DUF3049)
PF03713	Domain of unknown function (DUF305)
PF11251	Protein of unknown function (DUF3050)
PF11252	Protein of unknown function (DUF3051)
PF11253	Protein of unknown function (DUF3052)
PF11254	Protein of unknown function (DUF3053)
PF11255	Protein of unknown function (DUF3054)
PF11256	Protein of unknown function (DUF3055)
PF11259	Protein of unknown function (DUF3060)
PF11266	Protein of unknown function (DUF3066)
PF11267	Protein of unknown function (DUF3067)
PF11271	Protein of unknown function (DUF3068)
PF11269	Protein of unknown function (DUF3069)
PF03733	Domain of unknown function (DUF307)
PF11270	Protein of unknown function (DUF3070)
PF11268	Protein of unknown function (DUF3071)
PF11272	Protein of unknown function (DUF3072)
PF11273	Protein of unknown function (DUF3073)
PF11274	Protein of unknown function (DUF3074)
PF11275	Protein of unknown function (DUF3077)
PF11276	Protein of unknown function (DUF3078)
PF11278	Protein of unknown function (DUF3079)
PF03729	Short repeat of unknown function (DUF308)
PF11279	Protein of unknown function (DUF3080)
PF11280	Protein of unknown function (DUF3081)
PF11282	Protein of unknown function (DUF3082)
PF11281	Protein of unknown function (DUF3083)
PF11283	Protein of unknown function (DUF3084)
PF11284	Protein of unknown function (DUF3085)
PF11285	Protein of unknown function (DUF3086)
PF11286	Protein of unknown function (DUF3087)
PF11287	Protein of unknown function (DUF3088)
PF11288	Protein of unknown function (DUF3089)
PF03745	Domain of unknown function (DUF309)
PF11290	Protein of unknown function (DUF3090)
PF11291	Protein of unknown function (DUF3091)
PF11289	Protein of unknown function (DUF3092)
PF11292	Protein of unknown function (DUF3093)
PF11293	Protein of unknown function (DUF3094)
PF11294	Protein of unknown function (DUF3095)
PF11295	Protein of unknown function (DUF3096)
PF11296	Protein of unknown function (DUF3097)
PF11297	Protein of unknown function (DUF3098)
PF11298	Protein of unknown function (DUF3099)
PF01732	Putative peptidase (DUF31)
PF03750	Protein of unknown function (DUF310)
PF11299	Protein of unknown function (DUF3100)
PF11300	Protein of unknown function (DUF3102)
PF11301	Protein of unknown function (DUF3103)
PF11302	Protein of unknown function (DUF3104)
PF11303	Protein of unknown function (DUF3105)
PF11304	Protein of unknown function (DUF3106)
PF11305	Protein of unknown function (DUF3107)
PF11306	Protein of unknown function (DUF3108)
PF11307	Protein of unknown function (DUF3109)
PF11360	Protein of unknown function (DUF3110)
PF11309	Protein of unknown function (DUF3112)
PF11310	Protein of unknown function (DUF3113)
PF11311	Protein of unknown function (DUF3114)
PF11312	Protein of unknown function (DUF3115)
PF11313	Protein of unknown function (DUF3116)
PF11314	Protein of unknown function (DUF3117)
PF11317	Protein of unknown function (DUF3119)
PF11318	Protein of unknown function (DUF3120)
PF11319	Protein of unknown function (DUF3121)
PF11320	Protein of unknown function (DUF3122)
PF11321	Protein of unknown function (DUF3123)
PF11322	Protein of unknown function (DUF3124)
PF11323	Protein of unknown function (DUF3125)
PF11324	Protein of unknown function (DUF3126)
PF11325	Domain of unknown function (DUF3127)
PF11326	Protein of unknown function (DUF3128)
PF11327	Protein of unknown function (DUF3129)
PF03754	Domain of unknown function (DUF313)
PF11328	Protein of unknown function (DUF3130
PF11329	Protein of unknown function (DUF3131)
PF11330	Protein of unknown function (DUF3132)
PF11331	Protein of unknown function (DUF3133)
PF11332	Protein of unknown function (DUF3134)
PF11333	Protein of unknown function (DUF3135)
PF11334	Protein of unknown function (DUF3136)
PF11335	Protein of unknown function (DUF3137)
PF11336	Protein of unknown function (DUF3138)
PF11337	Protein of unknown function (DUF3139)
PF11338	Protein of unknown function (DUF3140)
PF11339	Protein of unknown function (DUF3141)
PF11340	Protein of unknown function (DUF3142)
PF11341	Protein of unknown function (DUF3143)
PF11342	Protein of unknown function (DUF3144)
PF11343	Protein of unknown function (DUF3145)
PF11344	Protein of unknown function (DUF3146)
PF11345	Protein of unknown function (DUF3147)
PF11347	Protein of unknown function (DUF3148)
PF11346	Protein of unknown function (DUF3149)
PF11348	Protein of unknown function (DUF3150)
PF11349	Protein of unknown function (DUF3151)
PF11350	Protein of unknown function (DUF3152)
PF11353	Protein of unknown function (DUF3153)
PF11351	Protein of unknown function (DUF3154)
PF11352	Protein of unknown function (DUF3155)
PF11354	Protein of unknown function (DUF3156)
PF11355	Protein of unknown function (DUF3157)
PF11358	Protein of unknown function (DUF3158)
PF11361	Protein of unknown function (DUF3159)
PF03761	Domain of unknown function (DUF316)
PF11369	Protein of unknown function (DUF3160)
PF11362	Protein of unknown function (DUF3161)
PF11363	Protein of unknown function (DUF3164)
PF11364	Protein of unknown function (DUF3165)
PF11365	Protein of unknown function (DUF3166)
PF11367	Protein of unknown function (DUF3168)
PF11368	Protein of unknown function (DUF3169)
PF11371	Protein of unknown function (DUF3172)
PF11372	Domain of unknown function (DUF3173)
PF11373	Protein of unknown function (DUF3175)
PF11374	Protein of unknown function (DUF3176)
PF11375	Protein of unknown function (DUF3177)
PF11376	Protein of unknown function (DUF3179)
PF03773	Predicted permease
PF11377	Protein of unknown function (DUF3180)
PF11378	Protein of unknown function (DUF3181)
PF11379	Protein of unknown function (DUF3182)
PF11380	Protein of unknown function (DUF3184)
PF11381	Protein of unknown function (DUF3185)
PF11382	Protein of unknown function (DUF3186)
PF11383	Protein of unknown function (DUF3187)
PF11384	Protein of unknown function (DUF3188)
PF11385	Protein of unknown function (DUF3189)
PF11399	Protein of unknown function (DUF3192)
PF11419	Protein of unknown function (DUF3194)
PF11424	Protein of unknown function (DUF3195)
PF11428	Protein of unknown function (DUF3196)
PF11432	Protein of unknown function (DUF3197)
PF11433	Protein of unknown function (DUF3198)
PF11436	Protein of unknown function (DUF3199)
PF03777	Small secreted domain (DUF320)
PF11447	Protein of unknown function (DUF3201)
PF11462	Protein of unknown function (DUF3203)
PF11472	Protein of unknown function (DUF3206)
PF11482	Protein of unknown function (DUF3208)
PF11483	Protein of unknown function (DUF3209)
PF03778	Protein of unknown function (DUF321)
PF11489	Protein of unknown function (DUF3210)
PF11485	Protein of unknown function (DUF3211)
PF11486	Protein of unknown function (DUF3212)
PF11491	Protein of unknown function (DUF3213)
PF11503	Protein of unknown function (DUF3215)
PF11505	Protein of unknown function (DUF3216)
PF11506	Protein of unknown function (DUF3217)
PF11508	Protein of unknown function (DUF3218)
PF11514	Protein of unknown function (DUF3219)
PF11516	Protein of unknown function (DUF3120)
PF11518	Protein of unknown function (DUF3221)
PF11519	Protein of unknown function (DUF3222)
PF11523	Protein of unknown function (DUF3223)
PF11528	Protein of unknown function (DUF3224)
PF11533	Protein of unknown function (DUF3225)
PF11536	Protein of unknown function (DUF3226)
PF11537	Protein of unknown function (DUF3227)
PF11539	Protein of unknown function (DUF3228)
PF11553	Protein of unknown function (DUF3231)
PF11554	Protein of unknown function (DUF3232)
PF11557	Protein of unknown function (DUF3233)
PF11572	Protein of unknown function (DUF3234)
PF11574	Protein of unknown function (DUF3235)
PF11576	Protein of unknown function (DUF3236)
PF11578	Protein of unknown function (DUF3237)
PF11579	Protein of unknown function (DUF3238)
PF11580	Protein of unknown function (DUF3239)
PF11582	Protein of unknown function (DUF3240)
PF11586	Protein of unknown function (DUF3242)
PF11588	Protein of unknown function (DUF3243)
PF11589	Domain of unknown function (DUF3244)
PF11595	Protein of unknown function (DUF3245)
PF11596	Protein of unknown function (DUF3246)
PF11607	Protein of unknown function (DUF3247)
PF11609	Protein of unknown function (DUF3248)
PF11615	Protein of unknown function (DUF3249)
PF03804	Viral domain of unknown function
PF11618	Protein of unknown function (DUF3250)
PF11622	Protein of unknown function (DUF3251)
PF11623	Protein of unknown function (DUF3252)
PF11625	Protein of unknown function (DUF3253)
PF11630	Protein of unknown function (DUF3254)
PF11631	Protein of unknown function (DUF3255)
PF11644	Protein of unknown function (DUF3256)
PF11646	Protein of unknown function DUF3258
PF11652	Protein of unknown function (DUF3259)
PF03860	Domain of Unknown Function (DUF326)
PF11658	Protein of unknown function (DUF3260)
PF11659	Protein of unknown function (DUF3261)
PF11660	Protein of unknown function (DUF3262)
PF11662	Protein of unknown function (DUF3263)
PF11665	Protein of unknown function (DUF3265)
PF11667	Protein of unknown function (DUF3267)
PF11672	Protein of unknown function (DUF3268)
PF11673	Protein of unknown function (DUF3269)
PF03885	Protein of unknown function (DUF327)
PF11674	Protein of unknown function (DUF3270)
PF11675	Protein of unknown function (DUF3271)
PF11676	Protein of unknown function (DUF3272)
PF11677	Protein of unknown function (DUF3273)
PF11678	Protein of unknown function (DUF3274)
PF11679	Protein of unknown function (DUF3275)
PF11680	Protein of unknown function (DUF3276)
PF11681	Protein of unknown function (DUF3277)
PF11683	Protein of unknown function (DUF3278)
PF11682	Protein of unknown function (DUF3279)
PF03883	Protein of unknown function (DUF328)
PF11684	Protein of unknown function (DUF2380)
PF11685	Protein of unknown function (DUF3281)
PF11686	Protein of unknown function (DUF3283)
PF11687	Domain of unknown function (DUF3284)
PF11688	Protein of unknown function (DUF3285)
PF11690	Protein of unknown function (DUF3287)
PF11691	Protein of unknown function (DUF3288)
PF11692	Protein of unknown function (DUF3289)
PF03884	Domain of unknown function (DUF329)
PF11694	Protein of unknown function (DUF3290)
PF11695	Domain of unknown function (DUF3291)
PF11696	Protein of unknown function (DUF3292)
PF11697	Protein of unknown function (DUF3293)
PF07957	Protein of unknown function (DUF3294)
PF11702	Protein of unknown function (DUF3295)
PF11726	Protein of unknown function (DUF3296)
PF11730	Protein of unknown function (DUF3297)
PF11738	Protein of unknown function (DUF3298)
PF11736	Protein of unknown function (DUF3299)
PF03886	Protein of unknown function (DUF330)
PF11737	Protein of unknown function (DUF3300)
PF11743	Protein of unknown function (DUF3301)
PF11742	Protein of unknown function (DUF3302)
PF11746	Protein of unknown function (DUF3303)
PF11745	Protein of unknown function (DUF3304)
PF11749	Protein of unknown function (DUF3305)
PF11748	Protein of unknown function (DUF3306)
PF11750	Protein of unknown function (DUF3307)
PF11751	Protein of unknown function (DUF3308)
PF11752	Protein of unknown function (DUF3309)
PF03889	Domain of unknown function
PF11753	Protein of unknwon function (DUF3310)
PF11755	Protein of unknown function (DUF3311)
PF11768	Protein of unknown function (DUF3312)
PF11769	Protein of unknown function (DUF3313)
PF11771	Protein of unknown function (DUF3314)
PF11776	Domain of unknown function (DUF3315)
PF11777	Protein of unknown function (DUF3316)
PF11779	Protein of unknown function (DUF3317)
PF11780	Protein of unknown function (DUF3318)
PF11782	Protein of unknown function (DUF3319)
PF11784	Protein of unknown function (DUF3320)
PF11968	Putative methyltransferase (DUF3321)
PF11795	Uncharacterized protein conserved in bacteria N-term (DUF3322)
PF11796	Protein of unknown function N-terminus (DUF3323)
PF11797	Protein of unknown function C-terminal (DUF3324)
PF11804	Protein of unknown function (DUF3325)
PF11805	Protein of unknown function (DUF3326)
PF11806	Domain of unknown function (DUF3327)
PF11807	Domain of unknown function (DUF3328)
PF11808	Domain of unknown function (DUF3329)
PF03891	Domain of unknown function (DUF333)
PF11809	Domain of unknown function (DUF3330)
PF11811	Domain of unknown function (DUF3331)
PF11810	Domain of unknown function (DUF3332)
PF11812	Domain of unknown function (DUF3333)
PF11813	Protein of unknown function (DUF3334)
PF11814	Peptidase_C39 like family
PF11815	Domain of unknown function (DUF3336)
PF11816	Domain of unknown function (DUF3337)
PF11819	Domain of unknown function (DUF3338)
PF11820	Protein of unknown function (DUF3339)
PF03904	Domain of unknown function (DUF334)
PF11818	C-terminal domain of tail specific protease (DUF3340)
PF11821	Protein of unknown function (DUF3341)
PF11822	Domain of unknown function (DUF3342)
PF11823	Protein of unknown function (DUF3343)
PF11824	Protein of unknown function (DUF3344)
PF11826	Protein of unknown function (DUF3346)
PF11827	Protein of unknown function (DUF3347)
PF11828	Protein of unknown function (DUF3348)
PF11829	Protein of unknown function (DUF3349)
PF11830	Domain of unknown function (DUF3350)
PF11832	Protein of unknown function (DUF3352)
PF11833	Protein of unknown function (DUF3353)
PF11834	Domain of unknown function (DUF3354)
PF11835	Domain of unknown function (DUF3355)
PF11836	Protein of unknown function (DUF3356)
PF11837	Domain of unknown function (DUF3357)
PF11839	Protein of unknown function (DUF3359)
PF03928	Domain of unknown function (DUF336)
PF11840	Protein of unknown function (DUF3360)
PF11841	Domain of unknown function (DUF3361)
PF11842	Domain of unknown function (DUF3362)
PF11843	Protein of unknown function (DUF3363)
PF11844	Domain of unknown function (DUF3364)
PF11845	Protein of unknown function (DUF3365)
PF11846	Domain of unknown function (DUF3366)
PF11847	Domain of unknown function (DUF3367)
PF11848	Domain of unknown function (DUF3368)
PF11849	Domain of unknown function (DUF3369)
PF11850	Protein of unknown function (DUF3370)
PF11851	Domain of unknown function (DUF3371)
PF11852	Domain of unknown function (DUF3372)
PF11853	Protein of unknown function (DUF3373)
PF11854	Protein of unknown function (DUF3374)
PF11855	Protein of unknown function (DUF3375)
PF11856	Protein of unknown function (DUF3376)
PF11857	Domain of unknown function (DUF3377)
PF11858	Domain of unknown function (DUF3378)
PF11859	Protein of unknown function (DUF3379)
PF11860	Protein of unknown function (DUF3380)
PF11861	Domain of unknown function (DUF3381)
PF11862	Domain of unknown function (DUF3382)
PF11863	Protein of unknown function (DUF3383)
PF11864	Domain of unknown function (DUF3384)
PF11865	Domain of unknown function (DUF3385)
PF11866	Protein of unknown function (DUF3386)
PF11867	Domain of unknown function (DUF3387)
PF11868	Protein of unknown function (DUF3388)
PF11869	Protein of unknown function (DUF3389)
PF11870	Domain of unknown function (DUF3390)
PF11871	Domain of unknown function (DUF3391)
PF11872	Protein of unknown function (DUF3392)
PF11873	Domain of unknown function (DUF3393)
PF11874	Domain of unknown function (DUF3394)
PF11875	Domain of unknown function (DUF3395)
PF11876	Protein of unknown function (DUF3396)
PF11877	Protein of unknown function (DUF3397)
PF11878	Domain of unknown function (DUF3398)
PF11879	Domain of unknown function (DUF3399)
PF03956	Membrane protein of unknown function (DUF340)
PF11880	Domain of unknown function (DUF3400)
PF11881	Domain of unknown function (DUF3401)
PF11882	Domain of unknown function (DUF3402)
PF11883	Domain of unknown function (DUF3403)
PF11884	Domain of unknown function (DUF3404)
PF11885	Protein of unknown function (DUF3405)
PF11886	Domain of unknown function (DUF3406)
PF11887	Protein of unknown function (DUF3407)
PF11888	Protein of unknown function (DUF3408)
PF11889	Domain of unknown function (DUF3409)
PF11890	Domain of unknown function (DUF3410)
PF11891	Domain of unknown function (DUF3411)
PF11892	Domain of unknown function (DUF3412)
PF11893	Domain of unknown function (DUF3413)
PF11894	Protein of unknown function (DUF3414)
PF11895	Domain of unknown function (DUF3415)
PF11896	Domain of unknown function (DUF3416)
PF11897	Protein of unknown function (DUF3417)
PF11898	Domain of unknown function (DUF3418)
PF11899	Protein of unknown function (DUF3419)
PF03961	Protein of unknown function (DUF342)
PF11900	Domain of unknown function (DUF3420)
PF11901	Protein of unknown function (DUF3421)
PF11902	Protein of unknown function (DUF3422)
PF11903	Protein of unknown function (DUF3423)
PF11905	Domain of unknown function (DUF3425)
PF11906	Protein of unknown function (DUF3426)
PF11907	Domain of unknown function (DUF3427)
PF11911	Protein of unknown function (DUF3429)
PF11912	Protein of unknown function (DUF3430)
PF11913	Protein of unknown function (DUF3431)
PF11914	Domain of unknown function (DUF3432)
PF11915	Protein of unknown function (DUF3433)
PF11917	Protein of unknown function (DUF3435)
PF11918	Domain of unknown function (DUF3436)
PF11919	Domain of unknown function (DUF3437)
PF11920	Protein of unknown function (DUF3438)
PF11921	Domain of unknown function (DUF3439)
PF11922	Domain of unknown function (DUF3440)
PF11923	Domain of unknown function (DUF3441)
PF11924	Protein of unknown function (DUF3442)
PF11925	Protein of unknown function (DUF3443)
PF11926	Domain of unknown function (DUF3444)
PF11927	Protein of unknown function (DUF3445)
PF11928	Domain of unknown function (DUF3446)
PF11929	Domain of unknown function (DUF3447)
PF11931	Domain of unknown function (DUF3449)
PF11932	Protein of unknown function (DUF3450)
PF11933	Domain of unknown function (DUF3451)
PF11934	Domain of unknown function (DUF3452)
PF11935	Domain of unknown function (DUF3453)
PF11936	Domain of unknown function (DUF3454)
PF11937	Protein of unknown function (DUF3455)
PF11938	TLR4 regulator and MIR-interacting MSAP
PF11939	Protein of unknown function (DUF3457)
PF11940	Domain of unknown function (DUF3458)
PF11941	Domain of unknown function (DUF3459)
PF03984	Repeat of unknown function (DUF346)
PF11943	Protein of unknown function (DUF3460)
PF11944	Protein of unknown function (DUF3461)
PF11946	Domain of unknown function (DUF3463)
PF11947	Protein of unknown function (DUF3464)
PF11948	Protein of unknown function (DUF3465)
PF11949	Protein of unknown function (DUF3466)
PF11950	Protein of unknown function (DUF3467)
PF11952	Protein of unknown function (DUF3469)
PF03988	Repeat of Unknown Function (DUF347)
PF11953	Domain of unknown function (DUF3470)
PF11954	Domain of unknown function (DUF3471)
PF11958	Domain of unknown function (DUF3472)
PF11959	Domain of unknown function (DUF3473)
PF11960	Domain of unknown function (DUF3474)
PF11961	Domain of unknown function (DUF3475)
PF11963	Protein of unknown function (DUF3477)
PF11965	Domain of unknown function (DUF3479)
PF03990	Domain of unknown function (DUF348)
PF11979	Domain of unknown function (DUF3480)
PF11980	Domain of unknown function (DUF3481)
PF11981	Domain of unknown function (DUF3482)
PF11982	Domain of unknown function (DUF3483)
PF11983	Domain of unknown function (DUF3484)
PF11984	Protein of unknown function (DUF3485)
PF11985	Protein of unknown function (DUF3486)
PF11990	Protein of unknown function (DUF3487)
PF11992	Domain of unknown function (DUF3488)
PF11994	Protein of unknown function (DUF3489)
PF03993	Domain of Unknown Function (DUF349)
PF11995	Domain of unknown function (DUF3490)
PF11996	Protein of unknown function (DUF3491)
PF11997	Domain of unknown function (DUF3492)
PF11998	Protein of unknown function (DUF3493)
PF11999	Protein of unknown function (DUF3494)
PF12001	Domain of unknown function (DUF3496)
PF12003	Domain of unknown function (DUF3497)
PF12004	Domain of unknown function (DUF3498)
PF12005	Protein of unknown function (DUF3499)
PF01796	DUF35 OB-fold domain
PF03994	Domain of Unknown Function (DUF350)
PF12006	Protein of unknown function (DUF3500)
PF12007	Protein of unknown function (DUF3501)
PF12010	Domain of unknown function (DUF3502)
PF12011	Domain of unknown function (DUF3503)
PF12012	Domain of unknown function (DUF3504)
PF12013	Protein of unknown function (DUF3505)
PF12014	Domain of unknown function (DUF3506)
PF12015	Domain of unknown function (DUF3507)
PF12018	Domain of unknown function (DUF3508)
PF12021	Protein of unknown function (DUF3509)
PF12022	Domain of unknown function (DUF3510)
PF12023	Domain of unknown function (DUF3511)
PF12024	Domain of unknown function (DUF3512)
PF12026	Domain of unknown function (DUF3513)
PF12027	Protein of unknown function (DUF3514)
PF12028	Protein of unknown function (DUF3515)
PF12029	Domain of unknown function (DUF3516)
PF12030	Domain of unknown function (DUF3517)
PF12031	Domain of unknown function (DUF3518)
PF12033	Protein of unknown function (DUF3519)
PF12034	Domain of unknown function (DUF3520)
PF12035	Protein of unknown function (DUF3521)
PF12036	Protein of unknown function (DUF3522)
PF12037	Domain of unknown function (DUF3523)
PF12038	Domain of unknown function (DUF3524)
PF12039	Protein of unknown function (DUF3525)
PF12040	Domain of unknown function (DUF3526)
PF12043	Domain of unknown function (DUF3527)
PF12045	Protein of unknown function (DUF3528)
PF12046	Protein of unknown function (DUF3529)
PF12048	Protein of unknown function (DUF3530)
PF12049	Protein of unknown function (DUF3531)
PF12051	Protein of unknown function (DUF3533)
PF12053	Domain of unknown function (DUF3534)
PF12054	Domain of unknown function (DUF3535)
PF12055	Domain of unknown function (DUF3536)
PF12056	Protein of unknown function (DUF3537)
PF12057	Domain of unknown function (DUF3538)
PF12058	Protein of unknown function (DUF3539)
PF04007	Protein of unknown function (DUF354)
PF12059	Protein of unknown function (DUF3540)
PF12060	Domain of unknown function (DUF3541)
PF12061	Protein of unknown function (DUF3542)
PF12063	Domain of unknown function (DUF3543)
PF12064	Domain of unknown function (DUF3544)
PF12065	Protein of unknown function (DUF3545)
PF12066	Domain of unknown function (DUF3546)
PF12068	Domain of unknown function (DUF3548)
PF12069	Protein of unknown function (DUF3549)
PF12070	Protein of unknown function (DUF3550/UPF0682)
PF12071	Protein of unknown function (DUF3551)
PF12072	Domain of unknown function (DUF3552)
PF12073	Protein of unknown function (DUF3553)
PF12074	Domain of unknown function (DUF3554)
PF12077	Transmembrane protein of unknown function (DUF3556)
PF12078	Domain of unknown function (DUF3557)
PF12079	Protein of unknown function (DUF3558)
PF04009	Protein of unknown function (DUF356)
PF12083	Domain of unknown function (DUF3560)
PF12084	Protein of unknown function (DUF3561)
PF12085	Protein of unknown function (DUF3562)
PF12086	Protein of unknown function (DUF3563)
PF12087	Protein of unknown function (DUF3564)
PF12088	Protein of unknown function (DUF3565)
PF12089	Transmembrane domain of unknown function (DUF3566)
PF12091	Protein of unknown function (DUF3567)
PF12092	Protein of unknown function (DUF3568)
PF04010	Protein of unknown function (DUF357)
PF12094	Protein of unknown function (DUF3570)
PF12095	Protein of unknown function (DUF3571)
PF12096	Protein of unknown function (DUF3572)
PF12097	Protein of unknown function (DUF3573)
PF12098	Protein of unknown function (DUF3574)
PF12099	Protein of unknown function (DUF3575)
PF12100	Domain of unknown function (DUF3576)
PF12101	Protein of unknown function (DUF3577)
PF12102	Domain of unknown function (DUF3578)
PF12112	Protein of unknown function (DUF3579)
PF12117	Protein of unknown function (DUF3580)
PF12119	Protein of unknown function (DUF3581)
PF12122	Protein of unknown function (DUF3582)
PF12126	Protein of unknown function (DUF3583)
PF12128	Protein of unknown function (DUF3584)
PF12130	Protein of unknown function (DUF3585)
PF12131	Protein of unknown function (DUF3586)
PF12132	Protein of unknown function (DUF3587)
PF12140	Protein of unknown function (DUF3588)
PF12141	Protein of unknown function (DUF3589)
PF04019	Protein of unknown function (DUF359)
PF12148	Protein of unknown function (DUF3590)
PF12157	Protein of unknown function (DUF3591)
PF12158	Protein of unknown function (DUF3592)
PF12159	Protein of unknown function (DUF3593)
PF12165	Domain of unknown function (DUF3594)
PF12166	Protein of unknown function (DUF3595)
PF12167	Domain of unknown function (DUF3596)
PF12200	Domain of unknown function (DUF3597)
PF12204	Domain of unknown function (DUF3598)
PF12206	Domain of unknown function (DUF3599)
PF12172	Rubredoxin-like zinc ribbon domain (DUF35_N)
PF04020	Membrane protein of unknown function
PF12207	Domain of unknown function (DUF3600)
PF12208	Domain of unknown function (DUF3601)
PF12223	Protein of unknown function (DUF3602)
PF12227	Protein of unknown function (DUF3603)
PF12228	Protein of unknown function (DUF3604)
PF12239	Protein of unknown function (DUF3605)
PF12244	Protein of unknown function (DUF3606)
PF12257	Protein of unknown function (DUF3608)
PF12259	Protein of unknown function (DUF3609)
PF12272	Protein of unknown function (DUF3610)
PF12263	Protein of unknown function (DUF3611)
PF12268	Protein of unknown function (DUF3612)
PF12266	Protein of unknown function (DUF3613)
PF12267	Protein of unknown function (DUF3614)
PF12274	Protein of unknown function (DUF3615)
PF12275	Protein of unknown function (DUF3616)
PF12276	Protein of unknown function (DUF3617)
PF12277	Protein of unknown function (DUF3618)
PF12279	Protein of unknown function (DUF3619)
PF04015	Domain of unknown function (DUF362)
PF12281	Protein of unknown function (DUF3620)
PF12285	Protein of unknown function (DUF3621)
PF12286	Protein of unknown function (DUF3622)
PF12291	Protein of unknown function (DUF3623)
PF12292	Protein of unknown function (DUF3624)
PF12293	Protein of unknown function (DUF3625)
PF12294	Protein of unknown function (DUF3626)
PF12299	Protein of unknown function (DUF3627)
PF12300	Protein of unknown function (DUF3628)
PF12302	Protein of unknown function (DUF3629)
PF12305	Protein of unknown function (DUF3630)
PF12307	Protein of unknown function (DUF3631)
PF12311	Protein of unknown function (DUF3632)
PF12315	Protein of unknown function (DUF3633)
PF12321	Protein of unknown function (DUF3634)
PF12330	Domain of unknown function (DUF3635)
PF12331	Protein of unknown function (DUF3636)
PF12337	Protein of unknown function (DUF3637)
PF12340	Protein of unknown function (DUF3638)
PF12341	Protein of unknown function (DUF3639)
PF04016	Domain of unknown function (DUF364)
PF12342	Protein of unknown function (DUF3640)
PF12345	Protein of unknown function (DUF3641)
PF12182	Bacterial lipoprotein
PF12356	Protein of unknown function (DUF3643)
PF12358	Protein of unknown function (DUF3644)
PF12359	Protein of unknown function (DUF3645)
PF12362	DNA polymerase III gamma and tau subunits C terminal
PF12363	Phage protein
PF12364	Protein of unknown function (DUF3648)
PF12365	Protein of unknown function (DUF3649)
PF04033	Domain of unknown function (DUF365)
PF12368	Protein of unknown function (DUF3650)
PF12371	Protein of unknown function (DUF3651)
PF12372	Huntingtin protein region
PF12375	Phage protein
PF12376	Protein of unknown function (DUF3654)
PF12379	Protein of unknown function (DUF3655)
PF12392	Collagenase
PF12394	Protein of unknown function (DUF3657)
PF12395	Protein of unknown function
PF12396	Protein of unknown function (DUF3659)
PF04017	Domain of unknown function (DUF366)
PF12398	Receptor serine/threonine kinase
PF12400	Vaculolar membrane protein
PF12401	Protein of unknown function (DUF2662)
PF12404	Peptidase
PF12406	Surface protein
PF12427	Branched-chain amino acid aminotransferase
PF12408	Ribose-5-phosphate isomerase
PF12412	Protein of unknown function (DUF3667)
PF12416	Cep120 protein
PF12417	Zinc finger protein
PF04034	Domain of unknown function (DUF367)
PF12419	SNF2 Helicase protein
PF12420	Protein of unknown function
PF12421	Fibronectin type III protein
PF12425	Protein of unknown function (DUF3673)
PF12426	RNA dependent RNA polymerase
PF12428	Protein of unknown function (DUF3675)
PF12429	Protein of unknown function (DUF3676)
PF12432	Protein of unknown function (DUF3677)
PF12435	Protein of unknown function (DUF3678)
PF12438	Protein of unknown function (DUF3679)
PF04018	Domain of unknown function (DUF368)
PF12441	Protein of unknown function (DUF3680)
PF12442	Protein of unknown function (DUF3681)
PF12446	Protein of unknown function (DUF3682)
PF12447	Protein of unknown function (DUF3683)
PF12449	Protein of unknown function (DUF3684)
PF12452	Protein of unknown function (DUF3685)
PF12458	ATPase involved in DNA repair
PF12459	D-Ala-teichoic acid biosynthesis protein
PF12461	Protein of unknown function (DUF3688)
PF12463	Protein of unknown function (DUF3689)
PF12469	CRISPR-associated protein
PF12472	Phage related protein
PF12473	Kinesin protein
PF12494	Protein of unknown function (DUF3695)
PF12476	Protein of unknown function (DUF3696)
PF12478	Ubiquitin-associated protein 2
PF12479	Protein of unknown function (DUF3698)
PF12480	Protein of unknown function (DUF3699)
PF04025	Domain of unknown function (DUF370)
PF12481	Aluminium induced protein
PF12482	Phage integrase protein
PF12486	ImpA domain protein
PF12487	Protein of unknown function (DUF3703)
PF12488	Protein of unknown function (DUF3704)
PF12499	Pherophorin
PF12501	Phosphate ATP-binding cassette transporter
PF12493	Protein of unknown function (DUF3709)
PF04027	Domain of unknown function (DUF371)
PF12502	Protein of unknown function (DUF3710)
PF12505	Protein of unknown function (DUF3712)
PF12506	Protein of unknown function (DUF3713)
PF12508	Protein of unknown function (DUF3714)
PF12509	Protein of unknown function (DUF3715)
PF12511	Protein of unknown function (DUF3716)
PF12512	Protein of unknown function (DUF3717)
PF12514	Protein of unknown function (DUF3718)
PF12516	Protein of unknown function (DUF3719)
PF04036	Domain of unknown function (DUF372)
PF12517	Protein of unknown function (DUF3720)
PF12518	Protein of unknown function
PF12519	Protein of unknown function (DUF3722)
PF12520	Protein of unknown function (DUF3723)
PF12521	Protein of unknown function (DUF3724)
PF12523	Protein of unknown function (DUF3725)
PF12525	Protein of unknown function (DUF3726)
PF12527	Protein of unknown function (DUF3727)
PF12528	Prepilin peptidase dependent protein C (DUF3728)
PF12526	Protein of unknown function (DUF3729)
PF04123	Domain of unknown function (DUF373)
PF12530	Protein of unknown function (DUF3730)
PF12531	DNA-K related protein
PF12532	Protein of unknown function (DUF3732)
PF12534	Leucine-rich repeat containing protein 8
PF12536	Patatin phospholipase
PF12537	Protein of unknown function (DUF3735)
PF12540	Protein of unknown function (DUF3736)
PF12541	Protein of unknown function (DUF3737)
PF12543	Protein of unknown function (DUF3738)
PF12545	Filamentous haemagglutinin family outer membrane protein
PF04028	Domain of unknown function (DUF374)
PF12548	Sulfatase protein
PF12552	Protein of unknown function (DUF3741)
PF12553	Protein of unknown function (DUF3742)
PF12558	ATP-binding cassette cobalt transporter
PF12560	Protein of unknown function (DUF3745)
PF12562	Protein of unknown function (DUF3746)
PF12565	Protein of unknown function (DUF3747)
PF12566	Protein of unknown function (DUF3748)
PF12568	Acetyltransferase (GNAT) domain
PF12570	Protein of unknown function (DUF3750)
PF12571	Phage tail-collar fibre protein
PF12572	Protein of unknown function (DUF3752)
PF12575	Protein of unknown function (DUF3753)
PF12576	Protein of unknown function (DUF3754)
PF12579	Protein of unknown function (DUF3755)
PF12581	Protein of unknown function (DUF3756)
PF12582	Protein of unknown function (DUF3757)
PF12585	Protein of unknown function (DUF3759)
PF12586	Protein of unknown function (DUF3760)
PF12587	Protein of unknown function (DUF3761)
PF12591	Protein of unknown function (DUF3762)
PF12592	Protein of unknown function (DUF3763)
PF12594	Protein of unknown function (DUF3764)
PF12611	Protein of unknown function (DUF3766)
PF12597	Protein of unknown function (DUF3767)
PF12599	Protein of unknown function (DUF3768)
PF12600	Protein of unknown function (DUF3769)
PF04041	Domain of unknown function (DUF377)
PF12603	Protein of unknown function (DUF3770)
PF12607	Protein of unknown function (DUF3772)
PF12608	Protein of unknown function (DUF3773)
PF12609	Wound-induced protein
PF12616	Protein of unknown function (DUF3775)
PF12618	Protein of unknown function (DUF3776)
PF12620	Protein of unknown function (DUF3778)
PF12621	Phosphate metabolism protein
PF04070	Domain of unknown function (DUF378)
PF12635	Protein of unknown function (DUF3780)
PF12636	Protein of unknown function (DUF3781)
PF12644	Protein of unknown function (DUF3782)
PF12646	Domain of unknown function (DUF3783)
PF12650	Domain of unknown function (DUF3784)
PF12653	Protein of unknown function (DUF3785)
PF12654	Domain of unknown function (DUF3786)
PF12655	Domain of unknown function (DUF3787)
PF12663	Protein of unknown function (DUF3788)
PF12664	Protein of unknown function (DUF3789)
PF12668	Protein of unknown function (DUF3791)
PF12670	Protein of unknown function (DUF3792)
PF12672	Protein of unknown function (DUF3793)
PF12673	Domain of unknown function (DUF3794)
PF12675	Protein of unknown function (DUF3795)
PF12676	Protein of unknown function (DUF3796)
PF12677	Domain of unknown function (DUF3797)
PF12683	Protein of unknown function (DUF3798)
PF12684	PDDEXK-like domain of unknown function (DUF3799)
PF12686	Protein of unknown function (DUF3800)
PF12687	Protein of unknown function (DUF3801)
PF12290	Protein of unknown function (DUF3802)
PF12707	Protein of unknown function (DUF3804)
PF12712	Domain of unknown function (DUF3805)
PF12713	Domain of unknown function (DUF3806)
PF12720	Protein of unknown function (DUF3807)
PF10300	Protein of unknown function (DUF3808)
PF12723	Protein of unknown function (DUF3809)
PF04038	Domain of unknown function (DUF381)
PF12725	Protein of unknown function (DUF3810)
PF11656	YjbD family (DUF3811)
PF12757	Protein of unknown function (DUF3812)
PF12758	Protein of unknown function (DUF3813)
PF12769	Domain of unknown function (DUF3814)
PF12821	Protein of unknown function (DUF3815)
PF12822	Protein of unknown function (DUF3816)
PF12823	Domain of unknown function (DUF3817)
PF12825	Domain of unknown function in PX-proteins (DUF3818)
PF12842	Domain of unknown function (DUF3819)
PF04037	Domain of unknown function (DUF382)
PF12843	Protein of unknown function (DUF3820)
PF12863	Domain of unknown function (DUF3821)
PF12864	Protein of unknown function (DUF3822)
PF12866	Protein of unknown function (DUF3823)
PF12868	Domain of unknwon function (DUF3824)
PF12873	Domain of unknown function (DUF3825)
PF12875	Protein of unknown function (DUF3826)
PF12877	Domain of unknown function (DUF3827)
PF12883	Protein of unknown function (DUF3828)
PF12889	Protein of unknown function (DUF3829)
PF04063	Domain of unknown function (DUF383)
PF12903	Protein of unknown function (DUF3830)
PF12909	Protein of unknown function (DUF3832)
PF12915	Protein of unknown function (DUF3833)
PF12916	Protein of unknown function (DUF3834)
PF12927	Domain of unknown function (DUF3835)
PF12930	Family of unknown function (DUF3836)
PF12939	Domain of unknown function (DUF3837)
PF12943	Protein of unknown function (DUF3839)
PF04064	Domain of unknown function (DUF384)
PF12944	Protein of unknown function (DUF3840)
PF12952	Domain of unknown function (DUF3841)
PF12953	Domain of unknown function (DUF3842)
PF12954	Protein of unknown function (DUF3843)
PF12955	Domain of unknown function (DUF3844)
PF12956	Domain of Unknown Function with PDB structure
PF12957	Domain of unknown function (DUF3846)
PF12958	Protein of unknown function (DUF3847)
PF12959	Protein of unknown function (DUF3848)
PF12960	Protein of unknown function (DUF3849)
PF04075	Domain of unknown function (DUF385)
PF12961	Domain of Unknown Function with PDB structure (DUF3850)
PF12962	Protein of unknown function (DUF3851)
PF12963	Protein of unknown function (DUF3852)
PF12964	Protein of unknown function (DUF3853)
PF12965	Domain of unknown function (DUF3854)
PF12967	Domain of Unknown Function with PDB structure (DUF3855)
PF12968	Domain of Unknown Function (DUF3856)
PF12969	Domain of Unknown Function with PDB structure (DUF3857)
PF12970	Domain of Unknown Function with PDB structure (DUF3858)
PF12975	Domain of unknown function (DUF3859)
PF04074	Domain of unknown function (DUF386)
PF12976	Domain of Unknown Function with PDB structure (DUF3860)
PF12977	Domain of Unknown Function with PDB structure (DUF3861)
PF12978	Domain of Unknown Function with PDB structure (DUF3862)
PF12979	Domain of Unknown Function with PDB structure (DUF3863)
PF12980	Domain of Unknown Function with PDB structure (DUF3864)
PF12981	Domain of Unknown Function with PDB structure (DUF3865)
PF12982	Protein of unknown function (DUF3866)
PF12983	Protein of unknown function (DUF3867)
PF12984	Domain of unknown function, B. Theta Gene description (DUF3868)
PF12985	Domain of unknown function (DUF3869)
PF04079	Putative transcriptional regulators (Ypuh-like)
PF12986	Domain of unknown function (DUF3870)
PF12987	Domain of unknown function, B. Theta Gene description (DUF3871)
PF12988	Domain of unknown function, B. Theta Gene description (DUF3872)
PF12989	Domain of unknown function, B. Theta Gene description (DUF3873)
PF12990	Domain of unknonw function from B. Theta Gene description (DUF3874)
PF12991	Domain of unknown function, B. Theta Gene description (DUF3875)
PF12992	Domain of unknown function, B. Theta Gene description (DUF3876)
PF12993	Domain of unknown function, E. rectale Gene description (DUF3877)
PF12994	Domain of unknown function, E. rectale Gene description (DUF3878)
PF12995	Domain of unknown function, E. rectale Gene description (DUF3879)
PF12996	DUF based on E. rectale Gene description (DUF3880)
PF12997	Domain of unknown function, E. rectale Gene description (DUF3881)
PF07066	Lactococcus phage M3 protein
PF13020	Domain of unknown function (DUF3883)
PF13024	Protein of unknown function (DUF3884)
PF13021	Domain of unknown function (DUF3885)
PF13025	Protein of unknown function (DUF3886)
PF13026	Protein of unknown function (DUF3887)
PF13027	Protein of unknown function (DUF3888)
PF13028	Protein of unknown function (DUF3889)
PF04087	Domain of unknown function (DUF389)
PF13029	Domain of unknown function (DUF3890)
PF13030	Protein of unknown function (DUF3891)
PF13031	Protein of unknown function (DUF3892)
PF13032	Domain of unknown function (DUF3893)
PF13033	Protein of unknown function (DUF3894)
PF13034	Protein of unknown function (DUF3895)
PF13035	Protein of unknown function (DUF3896)
PF13036	Protein of unknown function (DUF3897)
PF13037	Domain of unknown function (DUF3898)
PF13038	Domain of unknown function (DUF3899)
PF01837	Domain of unknown function DUF39
PF04094	Protein of unknown function (DUF390)
PF13039	Protein of unknown function (DUF3900)
PF13040	Protein of unknown function (DUF3901)
PF13042	Protein of unknown function (DUF3902)
PF13043	Domain of unknown function (DUF3903)
PF13044	Protein of unknown function (DUF3904)
PF13045	Protein of unknown function (DUF3905)
PF13046	Protein of unknown function (DUF3906)
PF13047	Protein of unknown function (DUF3907)
PF13048	Protein of unknown function (DUF3908)
PF13077	Protein of unknown function (DUF3909)
PF13049	Protein of unknown function (DUF3910)
PF13050	Protein of unknown function (DUF3911)
PF13051	Protein of unknown function (DUF3912)
PF13052	Protein of unknown function (DUF3913)
PF13053	Protein of unknown function (DUF3914)
PF13054	Protein of unknown function (DUF3915)
PF13079	Protein of unknown function (DUF3916)
PF13055	Protein of unknown function (DUF3917)
PF13056	Protein of unknown function (DUF3918)
PF13057	Protein of unknown function (DUF3919)
PF13058	Protein of unknown function (DUF3920)
PF13060	Protein of unknown function (DUF3921)
PF13059	Protein of unknown function (DUF3992)
PF13061	Protein of unknown function (DUF3923)
PF13062	Protein of unknown function (DUF3924)
PF13063	Protein of unknown function (DUF3925)
PF13080	Protein of unknown function (DUF3926)
PF13064	Protein of unknown function (DUF3927)
PF13065	Protein of unknown function (DUF3928)
PF13066	Protein of unknown function (DUF3929)
PF04134	Protein of unknown function, DUF393
PF13067	Protein of unknown function (DUF3930)
PF13082	Protein of unknown function (DUF3931)
PF13068	Protein of unknown function (DUF3932)
PF13069	Protein of unknown function (DUF3933)
PF13070	Protein of unknown function (DUF3934)
PF13071	Protein of unknown function (DUF3935)
PF13072	Protein of unknown function (DUF3936)
PF13073	Protein of unknown function (DUF3937)
PF13074	Protein of unknown function (DUF3938)
PF13075	Protein of unknown function (DUF3939)
PF13076	Protein of unknown function (DUF3940)
PF13081	Domain of unknown function (DUF3941)
PF13078	Protein of unknown function (DUF3942)
PF13084	Domain of unknown function (DUF3943)
PF13099	Domain of unknown function (DUF3944)
PF13101	Protein of unknown function (DUF3945)
PF13135	Protein of unknown function (DUF3947)
PF13134	Protein of unknown function (DUF3948)
PF13133	Protein of unknown function (DUF3949)
PF13132	Domain of unknown function (DUF3950)
PF13131	Protein of unknown function (DUF3951)
PF13130	Domain of unknown function (DUF3952)
PF13129	Protein of unknown function (DUF3953)
PF13128	Protein of unknown function (DUF3954)
PF13127	Protein of unknown function (DUF3955)
PF13104	Protein of unknown function (DUF3956)
PF13125	Protein of unknown function (DUF3958)
PF13105	Protein of unknown function (DUF3959)
PF13142	Domain of unknown function (DUF3960)
PF13106	Domain of unknown function (DUF3961)
PF13111	Protein of unknown function (DUF3962)
PF13124	Protein of unknown function (DUF3963)
PF13107	Protein of unknown function (DUF3964)
PF13112	Protein of unknown function (DUF3965)
PF13110	Protein of unknown function (DUF3966)
PF13152	Protein of unknown function (DUF3967)
PF13108	Protein of unknown function (DUF3969)
PF04149	Domain of unknown function (DUF397)
PF13113	Protein of unknown function (DUF3970)
PF13116	Protein of unknown function
PF13118	Protein of unknown function (DUF3972)
PF13119	Domain of unknown function (DUF3973)
PF13120	Domain of unknown function (DUF3974)
PF13126	Protein of unknown function (DUF3975)
PF13121	Domain of unknown function (DUF3976)
PF13122	Protein of unknown function (DUF3977)
PF13123	Protein of unknown function (DUF3978)
PF13141	Protein of unknown function (DUF3979)
PF13140	Domain of unknown function (DUF3980)
PF13139	Domain of unknown function (DUF3981)
PF13138	Protein of unknown function (DUF3982)
PF13137	Protein of unknown function (DUF3983)
PF13136	Protein of unknown function (DUF3984)
PF13153	Protein of unknown function (DUF3985)
PF13143	Protein of unknown function (DUF3986)
PF13148	Protein of unknown function (DUF3987)
PF13149	Protein of unknown function (DUF3988)
PF13150	Protein of unknown function (DUF3989)
PF04187	Protein of unknown function, DUF399
PF13151	Protein of unknown function (DUF3990)
PF13154	Protein of unknown function (DUF3991)
PF13157	Protein of unknown function (DUF3992)
PF13158	Protein of unknown function (DUF3993)
PF13159	Domain of unknown function (DUF3994)
PF13160	Protein of unknown function (DUF3995)
PF13161	Protein of unknown function (DUF3996)
PF13162	Protein of unknown function (DUF3997)
PF13163	Protein of unknown function (DUF3999)
PF13165	Protein of unknown function (DUF4001)
PF13164	Protein of unknown function (DUF4002)
PF13170	Protein of unknown function (DUF4003)
PF13171	Protein of unknown function (DUF4004)
PF13178	Protein of unknown function (DUF4005)
PF13179	Family of unknown function (DUF4006)
PF13182	Protein of unknown function (DUF4007)
PF04165	Protein of unknown function (DUF401)
PF13194	Domain of unknown function (DUF4010)
PF13195	Protein of unknown function (DUF4011)
PF13196	Protein of unknown function (DUF4012)
PF13197	Protein of unknown function (DUF4013)
PF13198	Protein of unknown function (DUF4014)
PF13200	Putative glycosyl hydrolase domain
PF13209	Protein of unknown function (DUF4017)
PF13210	Domain of unknown function (DUF4018)
PF13211	Protein of unknown function (DUF4019)
PF04167	Protein of unknown function (DUF402)
PF13212	Domain of unknown function (DUF4020)
PF13213	Protein of unknown function (DUF4021)
PF13214	Protein of unknown function (DUF4022)
PF13215	Protein of unknown function (DUF4023)
PF13216	Protein of unknown function (DUF4024)
PF13217	Protein of unknown function (DUF4025)
PF13218	Protein of unknown function (DUF4026)
PF13219	Protein of unknown function (DUF4027)
PF13220	Protein of unknown function (DUF4028)
PF13221	Protein of unknown function (DUF4029)
PF13222	Protein of unknown function (DUF4030)
PF13223	Protein of unknown function (DUF4031)
PF13224	Domain of unknown function (DUF4032)
PF13225	Domain of unknown function (DUF4033)
PF13226	Domain of unknown function (DUF4034)
PF13227	Protein of unknown function (DUF4035)
PF13228	Domain of unknown function (DUF4037)
PF13204	Protein of unknown function (DUF4038)
PF13244	Domain of unknown function (DUF4040)
PF13250	Domain of unknown function (DUF4041)
PF13251	Domain of unknown function (DUF4042)
PF13252	Protein of unknown function (DUF4043)
PF13253	Protein of unknown function (DUF4044)
PF13254	Domain of unknown function (DUF4045)
PF13255	Protein of unknown function (DUF4046)
PF13256	Domain of unknown function (DUF4047)
PF13257	Domain of unknown function (DUF4048)
PF13258	Domain of unknown function (DUF4049)
PF13259	Protein of unknown function (DUF4050)
PF13260	Protein of unknown function (DUF4051)
PF13261	Protein of unknown function (DUF4052)
PF13262	Protein of unknown function (DUF4054)
PF13264	Domain of unknown function (DUF4055)
PF13265	Protein of unknown function (DUF4056)
PF13266	Protein of unknown function (DUF4057)
PF13267	Protein of unknown function (DUF4058)
PF13268	Protein of unknown function (DUF4059)
PF04175	Protein of unknown function (DUF406)
PF13269	Protein of unknown function (DUF4060)
PF13270	Domain of unknown function (DUF4061)
PF13271	Domain of unknown function (DUF4062)
PF13272	Protein of unknown function (DUF4063)
PF13273	Protein of unknown function (DUF4064)
PF13274	Protein of unknown function (DUF4065)
PF13278	Putative amidotransferase
PF13282	Domain of unknown function (DUF4070)
PF13281	Domain of unknown function (DUF4071)
PF13284	Domain of unknown function (DUF4072)
PF13285	Domain of unknown function (DUF4073)
PF13293	Domain of unknown function (DUF4074)
PF13294	Domain of unknown function (DUF4075)
PF13295	Domain of unknown function (DUF4077)
PF13300	Domain of unknown function (DUF4078)
PF13301	Protein of unknown function (DUF4079)
PF13311	Protein of unknown function (DUF4080)
PF13312	Domain of unknown function (DUF4081)
PF13313	Domain of unknown function (DUF4082)
PF13314	Domain of unknown function (DUF4083)
PF13321	Domain of unknown function (DUF4084)
PF13315	Protein of unknown function (DUF4085)
PF13316	Protein of unknown function (DUF4087)
PF13317	Protein of unknown function (DUF4088)
PF13318	Protein of unknown function (DUF4089)
PF13319	Protein of unknown function (DUF4090)
PF13320	Domain of unknown function (DUF4091)
PF13322	Domain of unknown function (DUF4092)
PF13331	Domain of unknown function (DUF4093)
PF13334	Domain of unknown function (DUF4094)
PF13338	Domain of unknown function (DUF4095)
PF13340	Putative transposase of IS4/5 family (DUF4096)
PF13349	Domain of unknown function (DUF4097)
PF13345	Domain of unknown function (DUF4098)
PF13351	Protein of unknown function (DUF4099)
PF04190	Protein of unknown function (DUF410)
PF13352	Protein of unknown function (DUF4100)
PF13355	Protein of unknown function (DUF4101)
PF13356	Domain of unknown function (DUF4102)
PF13387	Domain of unknown function (DUF4105)
PF13388	Protein of unknown function (DUF4106)
PF13389	Protein of unknown function (DUF4107)
PF13390	Protein of unknown function (DUF4108)
PF13397	Domain of unknown function (DUF4109)
PF04214	Protein of unknown function, DUF
PF13422	Domain of unknown function (DUF4110)
PF13427	Domain of unknown function (DUF4111)
PF13430	Domain of unknown function (DUF4112)
PF13438	Domain of unknown function (DUF4113)
PF13448	Domain of unknown function (DUF4114)
PF13464	Domain of unknown function (DUF4115)
PF13475	Domain of unknown function (DUF4116)
PF13491	Domain of unknown function (DUF4117)
PF13493	Domain of unknown function (DUF4118)
PF13494	Domain of unknown function, B. Theta Gene description (DUF4119)
PF04217	Protein of unknown function, DUF412
PF13496	Domain of unknown function (DUF4120)
PF13497	Domain of unknown function (DUF4121)
PF13498	Domain of unknown function (DUF4122)
PF13503	Domain of unknown function (DUF4123)
PF13511	Domain of unknown function (DUF4124)
PF13526	Protein of unknown function (DUF4125)
PF13548	Domain of unknown function (DUF4126)
PF13552	Protein of unknown function (DUF4127)
PF13554	Bacteriophage related domain of unknown function
PF13559	Domain of unknown function (DUF4129)
PF04219	Protein of unknown function, DUF
PF13566	Domain of unknown function (DUF4130
PF13567	Domain of unknown function (DUF4131)
PF13569	Domain of unknown function (DUF4132)
PF13571	Domain of unknown function (DUF4133)
PF13572	Domain of unknown function (DUF4134)
PF13575	Domain of unknown function (DUF4135)
PF13590	Domain of unknown function (DUF4136)
PF13593	SBF-like CPA transporter family (DUF4137)
PF13595	Domain of unknown function (DUF4138)
PF13598	Domain of unknown function (DUF4139)
PF13600	N-terminal domain of unknown function (DUF4140)
PF13605	Domain of unknown function (DUF4141)
PF13628	Domain of unknown function (DUF4142)
PF13635	Domain of unknown function (DUF4143)
PF13642	protein structure with unknown function
PF13643	Domain of unknown function (DUF4145)
PF13652	Domain of unknown function (DUF4146)
PF13660	Domain of unknown function (DUF4147)
PF13663	Domain of unknown function (DUF4148)
PF13664	Domain of unknown function (DUF4149)
PF13665	Domain of unknown function (DUF4150)
PF13680	Protein of unknown function (DUF4152)
PF13687	Domain of unknown function (DUF4153)
PF13689	Domain of unknown function (DUF4154)
PF13698	Domain of unknown function (DUF4156)
PF13699	Domain of unknown function (DUF4157)
PF13700	Domain of unknown function (DUF4158)
PF13709	Domain of unknown function (DUF4159)
PF04222	Protein of unknown function (DUF416)
PF13711	Domain of unknown function (DUF4160)
PF13722	C-terminal domain on CstA (DUF4161)
PF13732	Domain of unknown function (DUF4162)
PF13739	Domain of unknown function (DUF4163)
PF13747	Domain of unknown function (DUF4164)
PF13752	Domain of unknown function (DUF4165)
PF13761	Domain of unknown function (DUF4166)
PF13763	Domain of unknown function (DUF4167)
PF13767	Domain of unknown function (DUF4168)
PF13770	Domain of unknown function (DUF4169)
PF04224	Protein of unknown function, DUF417
PF13773	Domain of unknown function (DUF4170)
PF13775	Domain of unknown function (DUF4171)
PF13776	Domain of unknown function (DUF4172)
PF13777	Domain of unknown function (DUF4173)
PF13778	Domain of unknown function (DUF4174)
PF13779	Domain of unknown function (DUF4175)
PF13780	Domain of unknown function (DUF4176)
PF13783	Domain of unknown function (DUF4177)
PF13785	Domain of unknown function (DUF4178)
PF13786	Domain of unknown function (DUF4179)
PF04235	Protein of unknown function (DUF418)
PF13788	Domain of unknown function (DUF4180)
PF13789	Domain of unknown function (DUF4181)
PF13790	Domain of unknown function (DUF4182)
PF13799	Domain of unknown function (DUF4183)
PF13803	Domain of unknown function (DUF4184)
PF13810	Domain of unknown function (DUF4185)
PF13811	Domain of unknown function (DUF4186)
PF13821	Domain of unknown function (DUF4187)
PF13826	Domain of unknown function (DUF4188)
PF13827	Domain of unknown function (DUF4189)
PF13828	Domain of unknown function (DUF4190)
PF13829	Domain of unknown function (DUF4191)
PF13830	Domain of unknown function (DUF4192)
PF13834	Domain of unknown function (DUF4193)
PF13835	Domain of unknown function (DUF4194)
PF13836	Domain of unknown function (DUF4195)
PF13846	Domain of unknown function (DUF4196)
PF13852	Protein of unknown function (DUF4197)
PF10670	Domain of unknown function (DUF4198)
PF13858	Protein of unknown function (DUF4199)
PF04238	Protein of unknown function (DUF420)
PF13863	Domain of unknown function (DUF4200)
PF13870	Domain of unknown function (DUF4201)
PF13875	Domain of unknown function (DUF4202)
PF13886	Domain of unknown function (DUF4203)
PF13898	Domain of unknown function (DUF4205)
PF13901	Domain of unknown function (DUF4206)
PF13904	Domain of unknown function (DUF4207)
PF13907	Domain of unknown function (DUF4208)
PF13910	Domain of unknown function (DUF4209)
PF04239	Protein of unknown function (DUF421)
PF13915	Domain of unknown function (DUF4210)
PF13926	Domain of unknown function (DUF4211)
PF13937	Domain of unknown function (DUF4212)
PF13938	Domain of unknown function (DUF4213)
PF13946	Domain of unknown function (DUF4214)
PF13948	Domain of unknown function (DUF4215)
PF13952	Domain of unknown function (DUF4216)
PF13959	Domain of unknown function (DUF4217)
PF13960	Domain of unknown function (DUF4218)
PF13961	Domain of unknown function (DUF4219)
PF04240	Protein of unknown function (DUF422)
PF13968	Domain of unknown function (DUF4220)
PF13970	Domain of unknown function (DUF4221)
PF13973	Domain of unknown function (DUF4222)
PF13978	Protein of unknown function (DUF4223)
PF13986	Domain of unknown function (DUF4224)
PF13988	Protein of unknown function (DUF4225)
PF10774	Domain of unknown function (DUF4226)
PF14004	Protein of unknown function (DUF4227)
PF14009	Domain of unknown function (DUF4228)
PF14012	Protein of unknown function (DUF4229)
PF04241	Protein of unknown function (DUF423)
PF14014	Protein of unknown function (DUF4230)
PF14015	Protein of unknown function (DUF4231)
PF14016	Protein of unknown function (DUF4232)
PF14017	Protein of unknown function (DUF4233)
PF14018	Domain of unknown function (DUF4234)
PF14019	Protein of unknown function (DUF4235)
PF14020	Protein of unknown function (DUF4236)
PF14021	Protein of unknown function (DUF4237)
PF14022	Protein of unknown function (DUF4238)
PF14023	Protein of unknown function (DUF4239)
PF04242	Protein of unknown function (DUF424)
PF14024	Protein of unknown function (DUF4240)
PF14025	Protein of unknown function (DUF4241)
PF14026	Protein of unknown function (DUF4242)
PF14027	Protein of unknown function (DUF4243)
PF14029	Protein of unknown function (DUF4244)
PF14030	Protein of unknown function (DUF4245)
PF14033	Protein of unknown function (DUF4246)
PF14042	Domain of unknown function (DUF4247)
PF14053	Domain of unknown function (DUF4248)
PF14054	Domain of unknown function (DUF4249)
PF14056	Domain of unknown function (DUF4250)
PF14059	Domain of unknown function (DUF4251)
PF14060	Domain of unknown function (DUF4252)
PF14062	Domain of unknown function (DUF4253)
PF14063	Protein of unknown function (DUF4254)
PF14065	Protein of unknown function (DUF4255)
PF14066	Protein of unknown function (DUF4256)
PF14074	Protein of unknown function (DUF4257)
PF14076	Domain of unknown function (DUF4258)
PF14078	Domain of unknown function (DUF4259)
PF14079	Domain of unknown function (DUF4260)
PF14080	Domain of unknown function (DUF4261)
PF14081	Domain of unknown function (DUF4262)
PF14082	Domain of unknown function (DUF4263)
PF14084	Protein of unknown function (DUF4264)
PF14085	Domain of unknown function (DUF4265)
PF14086	Domain of unknown function (DUF4266)
PF14087	Domain of unknown function (DUF4267)
PF14088	Domain of unknown function (DUF4268)
PF14091	Domain of unknown function (DUF4269)
PF04248	Domain of unknown function (DUF427)
PF14092	Domain of unknown function (DUF4270)
PF14093	Domain of unknown function (DUF4271)
PF14094	Domain of unknown function (DUF4272)
PF14096	Domain of unknown function (DUF4274)
PF14101	Domain of unknown function (DUF4275)
PF14103	Domain of unknown function (DUF4276)
PF14104	Domain of unknown function (DUF4277)
PF14105	Domain of unknown function (DUF4278)
PF14106	Domain of unknown function (DUF4279)
PF14107	Domain of unknown function (DUF4280)
PF14108	Domain of unknown function (DUF4281)
PF14110	Domain of unknown function (DUF4282)
PF14111	Domain of unknown function (DUF4283)
PF14112	Domain of unknown function (DUF4284)
PF14113	Domain of unknown function (DUF4285)
PF14114	Domain of unknown function (DUF4286)
PF14117	Domain of unknown function (DUF4287)
PF14119	Domain of unknown function (DUF4288)
PF14121	Domain of unknown function (DUF4289)
PF04250	Protein of unknown function (DUF429)
PF14123	Domain of unknown function (DUF4290)
PF14124	Domain of unknown function (DUF4291)
PF14125	Domain of unknown function (DUF4292)
PF14126	Domain of unknown function (DUF4293)
PF14127	Domain of unknown function (DUF4294)
PF14128	Domain of unknown function (DUF4295)
PF14129	Domain of unknown function (DUF4296)
PF14130	Domain of unknown function (DUF4297)
PF14131	Domain of unknown function (DUF4298)
PF14132	Domain of unknown function (DUF4299)
PF01861	Protein of unknown function DUF43
PF14133	Domain of unknown function (DUF4300)
PF14134	Domain of unknown function (DUF4301)
PF14135	Domain of unknown function (DUF4302)
PF14136	Domain of unknown function (DUF4303)
PF14137	Domain of unknown function (DUF4304)
PF14146	Domain of unknown function (DUF4305)
PF14154	Domain of unknown function (DUF4306)
PF14155	Domain of unknown function (DUF4307)
PF14172	Domain of unknown function (DUF4309)
PF14187	Domain of unknown function (DUF4310)
PF14188	Domain of unknown function (DUF4311)
PF14189	Domain of unknown function (DUF4312)
PF14190	Domain of unknown function (DUF4313)
PF14192	Domain of unknown function (DUF4314)
PF14193	Domain of unknown function (DUF4315)
PF14195	Domain of unknown function (DUF4316)
PF14199	Domain of unknown function (DUF4317)
PF14201	Domain of unknown function (DUF4318)
PF14203	Domain of unknown function (DUF4319)
PF04254	Protein of unknown function (DUF432)
PF14208	Domain of unknown function (DUF4320)
PF14209	Domain of unknown function (DUF4321)
PF14210	Domain of unknown function (DUF4322)
PF14213	Domain of unknown function (DUF4325)
PF14216	Domain of unknown function (DUF4326)
PF14217	Domain of unknown function (DUF4327)
PF14219	Domain of unknown function (DUF4328)
PF14220	Domain of unknown function (DUF4329)
PF04255	Protein of unknown function (DUF433)
PF14221	Domain of unknown function (DUF4330)
PF14224	Domain of unknown function (DUF4331)
PF14229	Domain of unknown function (DUF4332)
PF14230	Domain of unknown function (DUF4333)
PF14232	Domain of unknown function (DUF4334)
PF14233	Domain of unknown function (DUF4335)
PF14234	Domain of unknown function (DUF4336)
PF14235	Domain of unknown function (DUF4337)
PF14236	Domain of unknown function (DUF4338)
PF14237	Domain of unknown function (DUF4339)
PF04256	Protein of unknown function (DUF434)
PF14238	Domain of unknown function (DUF4340)
PF14241	Domain of unknown function (DUF4341)
PF14242	Domain of unknown function (DUF4342)
PF14243	Domain of unknown function (DUF4343)
PF14247	Domain of unknown function (DUF4344)
PF14248	Domain of unknown function (DUF4345)
PF14251	Domain of unknown function (DUF4346)
PF14252	Domain of unknown function (DUF4347)
PF14254	Domain of unknown function (DUF4348)
PF14257	Domain of unknown function (DUF4349)
PF14258	Domain of unknown function (DUF4350)
PF14261	Domain of unknown function (DUF4351)
PF11611	Domain of unknown function (DUF4352)
PF14262	Domain of unknown function (DUF4353)
PF14263	Domain of unknown function (DUF4354)
PF14265	Domain of unknown function (DUF4355)
PF14266	Domain of unknown function (DUF4356)
PF14267	Domain of unknown function (DUF4357)
PF14270	Domain of unknown function (DUF4358)
PF14271	Domain of unknown function (DUF4359)
PF04260	Protein of unknown function (DUF436)
PF14273	Domain of unknown function (DUF4360)
PF14274	Domain of unknown function (DUF4361)
PF14275	Domain of unknown function (DUF4362)
PF14276	Domain of unknown function (DUF4363)
PF14277	Domain of unknown function (DUF4364)
PF14280	Domain of unknown function (DUF4365)
PF14283	Domain of unknown function (DUF4366)
PF14285	Domain of unknown function (DUF4367)
PF14287	Domain of unknown function (DUF4368)
PF14289	Domain of unknown function (DUF4369)
PF14290	Domain of unknown function (DUF4370)
PF14291	Domain of unknown function (DUF4371)
PF14294	Domain of unknown function (DUF4372)
PF14297	Domain of unknown function (DUF4373)
PF14298	Domain of unknown function (DUF4374)
PF14300	Domain of unknown function (DUF4375)
PF14301	Domain of unknown function (DUF4376)
PF14302	Domain of unknown function (DUF4377)
PF14309	Domain of unknown function (DUF4378)
PF14311	Domain of unknown function (DUF4379)
PF04282	Family of unknown function (DUF438)
PF14315	Domain of unknown function (DUF4380)
PF14316	Domain of unknown function (DUF4381)
PF14321	Domain of unknown function (DUF4382)
PF14325	Domain of unknown function (DUF4383)
PF14326	Domain of unknown function (DUF4384)
PF14328	Domain of unknown function (DUF4385)
PF14329	Domain of unknown function (DUF4386)
PF14330	Domain of unknown function (DUF4387)
PF14332	Domain of unknown function (DUF4388)
PF14333	Domain of unknown function (DUF4389)
PF14334	Domain of unknown function (DUF4390)
PF14335	Domain of unknown function (DUF4391)
PF14336	Domain of unknown function (DUF4392)
PF14337	Domain of unknown function (DUF4393)
PF14339	Domain of unknown function (DUF4394)
PF14340	Domain of unknown function (DUF4395)
PF14342	Domain of unknown function (DUF4396)
PF14344	Domain of unknown function (DUF4397)
PF14346	Domain of unknown function (DUF4398)
PF14347	Domain of unknown function (DUF4399)
PF04269	Protein of unknown function, DUF440
PF14348	Domain of unknown function (DUF4400)
PF14351	Domain of unknown function (DUF4401)
PF14352	Domain of unknown function (DUF4402)
PF14356	Domain of unknown function (DUF4403)
PF14357	Domain of unknown function (DUF4404)
PF14358	Domain of unknown function (DUF4405)
PF14359	Domain of unknown function (DUF4406)
PF14362	Domain of unknown function (DUF4407)
PF14364	Domain of unknown function (DUF4408)
PF14365	Domain of unknown function (DUF4409)
PF04284	Protein of unknown function (DUF441)
PF14366	Domain of unknown function (DUF4410)
PF14367	Domain of unknown function (DUF4411)
PF14371	Domain of unknown function (DUF4412)
PF14372	Domain of unknown function (DUF4413)
PF14377	Domain of unknown function (DUF4414)
PF14384	Domain of unknown function (DUF4415)
PF14385	Domain of unknown function (DUF4416)
PF14386	Domain of unknown function (DUF4417)
PF14387	Domain of unknown function (DUF4418)
PF14388	Domain of unknown function (DUF4419)
PF04273	Putative phosphatase (DUF442)
PF14390	Domain of unknown function (DUF4420)
PF14391	Domain of unknown function (DUF4421)
PF14393	Domain of unknown function (DUF4422)
PF14394	Domain of unknown function (DUF4423)
PF14415	Domain of unknown function (DUF4424)
PF14466	Domain of unknown function (DUF4425)
PF14467	Domain of unknown function (DUF4426)
PF14468	Protein of unknown function (DUF4427)
PF14471	Domain of unknown function (DUF4428)
PF14472	Domain of unknown function (DUF4429)
PF04276	Protein of unknown function (DUF443)
PF14478	Domain of unknown function (DUF4430)
PF14485	Domain of unknown function (DUF4431)
PF14486	Domain of unknown function (DUF4432)
PF14487	Domain of unknown function (DUF4433)
PF14488	Domain of unknown function (DUF4434)
PF14491	Protein of unknown function (DUF4435)
PF14494	Domain of unknown function (DUF4436)
PF14499	Domain of unknown function (DUF4437)
PF14505	Domain of unknown function (DUF4438)
PF14530	Domain of unknown function (DUF4439)
PF04285	Protein of unknown function (DUF444)
PF14534	Domain of unknown function (DUF4440)
PF14536	Domain of unknown function (DUF4441)
PF14539	Domain of unknown function (DUF4442)
PF14544	Domain of unknown function (DUF4443)
PF14563	Domain of unknown function (DUF4444)
PF14574	Domain of unknown function (DUF4445)
PF14584	Protein of unknown function (DUF4446)
PF14590	Domain of unknown function (DUF4447)
PF14610	Protein of unknown function (DUF4448)
PF14613	Protein of unknown function (DUF4449)
PF04286	Protein of unknown function (DUF445)
PF14614	Domain of unknown function (DUF4450)
PF14616	Domain of unknown function (DUF4451)
PF14618	Domain of unknown function (DUF4452)
PF14627	Domain of unknown function (DUF4453)
PF14628	Domain of unknown function (DUF4454)
PF14643	Domain of unknown function (DUF4455)
PF14644	Domain of unknown function (DUF4456)
PF14652	Domain of unknown function (DUF4457)
PF14660	Domain of unknown function (DUF4458)
PF14673	Domain of unknown function (DUF4459)
PF04287	tRNA pseudouridine synthase C
PF14687	Domain of unknown function (DUF4460)
PF14688	Domain of unknown function (DUF4461)
PF14692	Domain of unknown function (DUF4462)
PF14703	Domain of unknown function (DUF4463)
PF14713	Domain of unknown function (DUF4464)
PF14717	Domain of unknown function (DUF4465)
PF14725	Domain of unknown function (DUF4466)
PF14729	Domain of unknown function with cystatin-like fold (DUF4467)
PF14730	Domain of unknown function (DUF4468) with TBP-like fold
PF14734	Domain of unknown function (DUF4469) with IG-like fold
PF04289	Protein of unknown function (DUF447)
PF14737	Domain of unknown function (DUF4470)
PF14740	Domain of unknown function (DUF4471)
PF14739	Domain of unknown function (DUF4472)
PF14747	Domain of unknown function (DUF4473)
PF14751	Domain of unknown function (DUF4474)
PF14753	Domain of unknown function (DUF4475)
PF14771	Domain of unknown function (DUF4476)
PF14780	Domain of unknown function (DUF4477)
PF14793	Domain of unknown function (DUF4478)
PF14794	Domain of unknown function (DUF4479)
PF04296	Protein of unknown function (DUF448)
PF13715	Domain of unknown function (DUF4480)
PF14800	Domain of unknown function (DUF4481)
PF14818	Domain of unknown function (DUF4482)
PF14825	Domain of unknown function (DUF4483)
PF14831	Domain of unknown function (DUF4484)
PF14846	Domain of unknown function (DUF4485)
PF14858	Domain of unknown function (DUF4486)
PF14868	Domain of unknown function (DUF4487)
PF14869	Domain of unknown function (DUF4488)
PF14879	Domain of unknown function (DUF4489)
PF14892	Domain of unknown function (DUF4490)
PF14898	Domain of unknown function (DUF4491)
PF14899	Domain of unknown function (DUF4492)
PF14900	Domain of unknown function (DUF4493)
PF14902	Domain of unknown function (DUF4494)
PF14906	Domain of unknown function (DUF4495)
PF14908	Domain of unknown function (DUF4496)
PF14924	Protein of unknown function (DUF4497)
PF14926	Domain of unknown function (DUF4498)
PF14934	Domain of unknown function (DUF4499)
PF01863	Protein of unknown function DUF45
PF14937	Domain of unknown function (DUF4500)
PF14946	Domain of unknown function (DUF4501)
PF14950	Domain of unknown function (DUF4502)
PF14951	Domain of unknown function (DUF4503)
PF14953	Domain of unknown function (DUF4504)
PF14956	Domain of unknown function (DUF4505)
PF14958	Domain of unknown function (DUF4506)
PF14964	Domain of unknown function (DUF4507)
PF14969	Domain of unknown function (DUF4508)
PF14970	Domain of unknown function (DUF4509)
PF14971	Domain of unknown function (DUF4510)
PF14974	Domain of unknown function (DUF4511)
PF14975	Domain of unknown function (DUF4512)
PF14983	Domain of unknown function (DUF4513)
PF14986	Domain of unknown function (DUF4514)
PF14988	Domain of unknown function (DUF4515)
PF14990	Domain of unknown function (DUF4516)
PF15006	Domain of unknown function (DUF4517)
PF15008	Domain of unknown function (DUF4518)
PF15012	Domain of unknown function (DUF4519)
PF04301	Protein of unknown function (DUF452)
PF15016	Domain of unknown function (DUF4520)
PF15021	Protein of unknown function (DUF4521)
PF15022	Protein of unknown function (DUF4522)
PF15023	Protein of unknown function (DUF4523)
PF15025	Domain of unknown function (DUF4524)
PF15027	Domain of unknown function (DUF4525)
PF15029	Protein of unknown function (DUF4526)
PF15030	Protein of unknown function (DUF4527)
PF15031	Domain of unknown function (DUF4528)
PF15032	Protein of unknown function (DUF4529)
PF15039	Domain of unknown function (DUF4530)
PF15041	Domain of unknown function (DUF4531)
PF15046	Protein of unknown function (DUF4532)
PF15047	Protein of unknown function (DUF4533)
PF15049	Protein of unknown function (DUF4534)
PF15054	Domain of unknown function (DUF4535)
PF15055	Domain of unknown function (DUF4536)
PF15057	Domain of unknown function (DUF4537)
PF15061	Domain of unknown function (DUF4538)
PF15072	Domain of unknown function (DUF4539)
PF04304	Protein of unknown function (DUF454)
PF15073	Domain of unknown function (DUF4540)
PF15074	Domain of unknown function (DUF4541)
PF15075	Domain of unknown function (DUF4542)
PF15076	Domain of unknown function (DUF4543)
PF15077	Domain of unknown function (DUF4544)
PF15078	Domain of unknown function (DUF4545)
PF15079	Domain of unknown function (DUF4546)
PF15080	Domain of unknown function (DUF4547)
PF15081	Domain of unknown function (DUF4548)
PF15082	Domain of unknown function (DUF4549)
PF04305	Protein of unknown function (DUF455)
PF15084	Domain of unknown function (DUF4550)
PF15087	Protein of unknown function (DUF4551)
PF15089	Domain of unknown function (DUF4552)
PF15090	Domain of unknown function (DUF4553)
PF15091	Domain of unknown function (DUF4554)
PF15093	Domain of unknown function (DUF4555)
PF15094	Domain of unknown function (DUF4556)
PF15101	Domain of unknown function (DUF4557)
PF15104	Domain of unknown function (DUF4558)
PF15112	Domain of unknown function (DUF4559)
PF04306	Protein of unknown function (DUF456)
PF15118	Domain of unknown function (DUF4560)
PF15120	Domain of unknown function (DUF4561)
PF15123	Domain of unknown function (DUF4562)
PF15124	Domain of unknown function (DUF4563)
PF15169	Domain of unknown function (DUF4564)
PF15127	Protein of unknown function (DUF4565)
PF15130	Domain of unknown function (DUF4566)
PF15131	Domain of unknown function (DUF4567)
PF15132	Domain of unknown function (DUF4568)
PF15133	Domain of unknown function (DUF4569)
PF04307	Predicted membrane-bound metal-dependent hydrolase (DUF457)
PF15134	Domain of unknown function (DUF4570)
PF15137	Domain of unknown function (DUF4571)
PF15139	Domain of unknown function (DUF4572)
PF15140	Domain of unknown function (DUF4573)
PF15141	Domain of unknown function (DUF4574)
PF15143	Domain of unknown function (DUF4575)
PF15144	Domain of unknown function (DUF4576)
PF15145	Domain of unknown function (DUF4577)
PF15147	Domain of unknown function (DUF4578)
PF15158	Domain of unknown function (DUF4579)
PF04308	Protein of unknown function (DUF458)
PF15162	Domain of unknown function (DUF4580)
PF15167	Domain of unknown function (DUF4581)
PF15189	Domain of unknown function (DUF4582)
PF15190	Domain of unknown function (DUF4583)
PF15223	Domain of unknown function (DUF4584)
PF15232	Domain of unknown function (DUF4585)
PF15239	Domain of unknown function (DUF4586)
PF15248	Domain of unknown function (DUF4587)
PF15251	Domain of unknown function (DUF4588)
PF15252	Domain of unknown function (DUF4589)
PF04311	Protein of unknown function (DUF459)
PF15257	Domain of unknown function (DUF4590)
PF15261	Domain of unknown function (DUF4591)
PF15262	Domain of unknown function (DUF4592)
PF15263	Domain of unknown function (DUF4593)
PF15266	Domain of unknown function (DUF4594)
PF15283	Domain of unknown function (DUF4595) with porin-like fold
PF15363	Domain of unknown function (DUF4596)
PF15366	Domain of unknown function (DUF4597)
PF15370	Domain of unknown function (DUF4598)
PF15371	Domain of unknown function (DUF4599)
PF01864	Putative integral membrane protein DUF46
PF04312	Protein of unknown function (DUF460)
PF15372	Domain of unknown function (DUF4600)
PF15373	Domain of unknown function (DUF4601)
PF15375	Domain of unknown function (DUF4602)
PF15376	Domain of unknown function (DUF4603)
PF15377	Domain of unknown function (DUF4604)
PF15378	Domain of unknown function (DUF4605)
PF15379	Domain of unknown function (DUF4606)
PF15380	Domain of unknown function (DUF4607)
PF15381	Domain of unknown function (DUF4608)
PF15382	Domain of unknown function (DUF4609)
PF04314	Protein of unknown function (DUF461)
PF15384	Domain of unknown function (DUF4610)
PF15387	Domain of unknown function (DUF4611)
PF15389	Domain of unknown function (DUF4612)
PF15390	Domain of unknown function (DUF4613)
PF15391	Domain of unknown function (DUF4614)
PF15393	Domain of unknown function (DUF4615)
PF15394	Domain of unknown function (DUF4616)
PF15395	Domain of unknown function (DUF4617)
PF15397	Domain of unknown function (DUF4618)
PF15398	Domain of unknown function (DUF4619)
PF04315	Protein of unknown function, DUF462
PF15399	Domain of unknown function (DUF4620)
PF15414	Protein of unknown function (DUF4621)
PF15415	Protein of unknown function (DUF4622)
PF15416	Domain of unknown function (DUF4623)
PF15417	Domain of unknown function (DUF4624)
PF15418	Domain of unknown function (DUF4625)
PF15422	Domain of unknown function (DUF4626)
PF15425	Domain of unknown function (DUF4627)
PF15429	Domain of unknown function (DUF4628)
PF15442	Domain of unknown function (DUF4629)
PF04317	YcjX-like family, DUF463
PF15443	Domain of unknown function (DUF4630)
PF15450	Domain of unknown function (DUF4631)
PF15451	Domain of unknown function (DUF4632)
PF15464	Domain of unknown function (DUF4633)
PF15465	Domain of unknown function (DUF4634)
PF15466	Domain of unknown function (DUF4635)
PF15468	Domain of unknown function (DUF4636)
PF15470	Domain of unknown function (DUF4637)
PF15472	Domain of unknown function (DUF4638)
PF15479	Domain of unknown function (DUF4639)
PF04327	Protein of unknown function (DUF464)
PF15480	Domain of unknown function (DUF4640)
PF15483	Domain of unknown function (DUF4641)
PF15484	Domain of unknown function (DUF4642)
PF15485	Domain of unknown function (DUF4643)
PF15486	Domain of unknown function (DUF4644)
PF15488	Domain of unknown function (DUF4645)
PF15496	Domain of unknown function (DUF4646)
PF15504	Domain of unknown function (DUF4647)
PF15505	Domain of unknown function (DUF4648)
PF15507	Domain of unknown function (DUF4649)
PF04325	Protein of unknown function (DUF465)
PF15509	Domain of unknown function (DUF4650)
PF15513	Domain of unknown function (DUF4651)
PF15525	Domain of unknown function (DUF4652)
PF15546	Domain of unknown function (DUF4653)
PF15547	Domain of unknown function (DUF4654)
PF15548	Domain of unknown function (DUF4655)
PF15551	Domain of unknown function (DUF4656)
PF15552	Domain of unknown function (DUF4657)
PF15555	Domain of unknown function (DUF4658)
PF15558	Domain of unknown function (DUF4659)
PF04328	Protein of unknown function (DUF466)
PF15559	Domain of unknown function (DUF4660)
PF15576	Domain of unknown function (DUF4661)
PF15578	Domain of unknown function (DUF4662)
PF04318	Protein of unknown function (DUF468)
PF04320	Protein with unknown function (DUF469)
PF04322	Protein of unknown function (DUF473)
PF04332	Protein of unknown function (DUF475)
PF04334	Protein of unknown function (DUF478)
PF04336	Protein of unknown function, DUF479
PF04337	Protein of unknown function, DUF480
PF04338	Protein of unknown function, DUF481
PF04339	Protein of unknown function, DUF482
PF04467	Protein of unknown function (DUF483)
PF04340	Protein of unknown function, DUF484
PF04341	Protein of unknown function, DUF485
PF04342	Protein of unknown function, DUF486
PF04343	Protein of unknown function, DUF488
PF04356	Protein of unknown function (DUF489)
PF04357	Family of unknown function (DUF490)
PF04359	Protein of unknown function (DUF493)
PF04361	Protein of unknown function (DUF494)
PF04363	Protein of unknown function (DUF496)
PF04365	Protein of unknown function (DUF497)
PF04430	Protein of unknown function (DUF498/DUF598)
PF04465	Protein of unknown function (DUF499)
PF04366	Family of unknown function (DUF500)
PF04417	Protein of unknown function (DUF501)
PF04367	Protein of unknown function (DUF502)
PF04456	Protein of unknown function (DUF503)
PF04457	Protein of unknown function (DUF504)
PF04458	Protein of unknown function (DUF505)
PF04720	Protein of unknown function (DUF506)
PF04368	Protein of unknown function (DUF507)
PF04370	Domain of unknown function (DUF508)
PF04459	Protein of unknown function (DUF512)
PF04415	Protein of unknown function (DUF515)
PF04461	Protein of unknown function (DUF520)
PF04412	Protein of unknown function (DUF521)
PF04463	Protein of unknown function (DUF523)
PF04411	Protein of unknown function (DUF524)
PF04379	Protein of unknown function (DUF525)
PF04409	Protein of unknown function (DUF530)
PF04407	Protein of unknown function (DUF531)
PF04391	Protein of unknown function (DUF533)
PF04393	Protein of unknown function (DUF535)
PF04394	Protein of unknown function, DUF536
PF04398	Protein of unknown function, DUF538
PF04400	Protein of unknown function (DUF539)
PF04418	Domain of unknown function (DUF543)
PF04424	Protein of unknown function (DUF544)
PF04784	Protein of unknown function, DUF547
PF04447	Protein of unknown function (DUF550)
PF04448	Protein of unknown function (DUF551)
PF04472	Protein of unknown function (DUF552)
PF04473	Transglutaminase-like domain
PF04474	Protein of unknown function (DUF554)
PF04475	Protein of unknown function (DUF555)
PF04476	Protein of unknown function (DUF556)
PF04480	Protein of unknown function (DUF559)
PF04575	Protein of unknown function (DUF560)
PF04481	Protein of unknown function (DUF561)
PF04763	Protein of unknown function (DUF562)
PF04577	Protein of unknown function (DUF563)
PF04483	Protein of unknown function (DUF565)
PF04484	Family of unknown function (DUF566)
PF04526	Protein of unknown function (DUF568)
PF04601	Protein of unknown function (DUF569)
PF04489	Protein of unknown function (DUF570)
PF04502	Family of unknown function (DUF572)
PF04504	Protein of unknown function, DUF573
PF04746	Protein of unknown function (DUF575)
PF04507	Protein of unknown function, DUF576
PF04510	Family of unknown function (DUF577)
PF01882	Protein of unknown function DUF58
PF04570	Protein of unknown function (DUF581)
PF04522	Protein of unknown function (DUF585)
PF04532	Protein of unknown function (DUF587)
PF04535	Domain of unknown function (DUF588)
PF01883	Domain of unknown function DUF59
PF04569	Protein of unknown function
PF04574	Protein of unknown function (DUF592)
PF04578	Protein of unknown function, DUF594
PF04591	Protein of unknown function, DUF596
PF04654	Protein of unknown function, DUF599
PF04634	Protein of unknown function, DUF600
PF04642	Protein of unknown function, DUF601
PF04645	Protein of unknown function, DUF603
PF04646	Protein of unknown function, DUF604
PF04652	Vta1 like
PF04657	Protein of unknown function, DUF606
PF04678	Protein of unknown function, DUF607
PF04685	Protein of unknown function, DUF608
PF01886	Protein of unknown function DUF61
PF04747	Protein of unknown function, DUF612
PF04764	Protein of unknown function (DUF613)
PF04751	Protein of unknown function (DUF615)
PF04765	Protein of unknown function (DUF616)
PF04759	Protein of unknown function, DUF617
PF04768	Protein of unknown function (DUF619)
PF04788	Protein of unknown function (DUF620)
PF04789	Protein of unknown function (DUF621)
PF04854	Protein of unknown function, DUF624
PF04776	Protein of unknown function (DUF626)
PF04781	Protein of unknown function (DUF627)
PF04780	Protein of unknown function (DUF629)
PF01889	Membrane protein of unknown function DUF63
PF04783	Protein of unknown function (DUF630)
PF04782	Protein of unknown function (DUF632)
PF04816	Family of unknown function (DUF633)
PF04830	Possible hemagglutinin (DUF637)
PF04842	Plant protein of unknown function (DUF639)
PF04852	Protein of unknown function (DUF640)
PF04859	Plant protein of unknown function (DUF641)
PF04862	Protein of unknown function (DUF642)
PF04867	Protein of unknown function (DUF643)
PF04875	Protein of unknown function, DUF645
PF04884	Vitamin B6 photo-protection and homoeostasis
PF04890	Family of unknown function (DUF648)
PF04894	Archaeal protein of unknown function (DUF650)
PF04895	Archaeal protein of unknown function (DUF651)
PF04919	Protein of unknown function (DUF655)
PF04920	Family of unknown function (DUF656)
PF04936	Protein of unknown function (DUF658)
PF04937	Protein of unknown function (DUF 659)
PF04950	Protein of unknown function (DUF663)
PF04978	Protein of unknown function (DUF664)
PF05006	Protein of unknown function (DUF666)
PF05018	Protein of unknown function (DUF667)
PF05003	Protein of unknown function (DUF668)
PF05037	Protein of unknown function (DUF669)
PF05054	Protein of unknown function (DUF673)
PF05056	Protein of unknown function (DUF674)
PF05057	Putative serine esterase (DUF676)
PF05055	Protein of unknown function (DUF677)
PF05077	Protein of unknown function (DUF678)
PF05078	Protein of unknown function (DUF679)
PF05079	Protein of unknown function (DUF680)
PF05080	Protein of unknown function (DUF681)
PF05081	Protein of unknown function (DUF682)
PF05075	Protein of unknown function (DUF684)
PF05085	Protein of unknown function (DUF685)
PF05095	Protein of unknown function (DUF687)
PF05097	Protein of unknown function (DUF688)
PF05108	Protein of unknown function (DUF690)
PF05114	Protein of unknown function (DUF692)
PF05113	Protein of unknown function (DUF693)
PF05107	Family of unknown function (DUF694)
PF05117	Family of unknown function (DUF695)
PF05128	Domain of unknown function (DUF697)
PF01901	Protein of unknown function  DUF70
PF05142	Domain of unknown function (DUF702)
PF05152	Protein of unknown function (DUF705)
PF05153	Family of unknown function (DUF706)
PF05212	Protein of unknown function (DUF707)
PF05341	Protein of unknown function (DUF708)
PF05167	Uncharacterised ACR (DUF711)
PF05218	Protein of unknown function (DUF713)
PF04819	Family of unknown function (DUF716)
PF05338	Protein of unknown function (DUF717)
PF05336	Domain of unknown function (DUF718)
PF05334	Protein of unknown function (DUF719)
PF01904	Protein of unknown function DUF72
PF05302	Protein of unknown function (DUF720)
PF05258	Protein of unknown function (DUF721)
PF05263	Protein of unknown function (DUF722)
PF05265	Protein of unknown function (DUF723)
PF05266	Protein of unknown function (DUF724)
PF05267	Protein of unknown function (DUF725)
PF05277	Protein of unknown function (DUF726)
PF05303	Protein of unknown function (DUF727)
PF05304	Protein of unknown function (DUF728)
PF05325	Protein of unknown function (DUF730)
PF05305	Protein of unknown function (DUF732)
PF05306	Protein of unknown function (DUF733)
PF05246	Protein of unknown function (DUF735)
PF05284	Protein of unknown function (DUF736)
PF05300	Protein of unknown function (DUF737)
PF05339	Protein of unknown function (DUF739)
PF05340	Protein of unknown function (DUF740)
PF05331	Protein of unknown function (DUF742)
PF05332	Protein of unknown function (DUF743)
PF05335	Protein of unknown function (DUF745)
PF05344	Domain of Unknown Function (DUF746)
PF05346	Eukaryotic membrane protein family
PF05359	Domain of Unknown Function (DUF748)
PF05370	Domain of unknown function (DUF749)
PF04721	Domain of unknown function (DUF750)
PF05421	Protein of unknown function (DUF751)
PF05444	Protein of unknown function (DUF753)
PF05449	Protein of unknown function (DUF754)
PF05501	Domain of unknown function (DUF755)
PF05506	Domain of unknown function (DUF756)
PF05527	Domain of unknown function (DUF758)
PF05537	Borrelia burgdorferi protein of unknown function (DUF759)
PF05542	Protein of unknown function (DUF760)
PF05553	Cotton fibre expressed protein
PF05555	Coxiella burnetii protein of unknown function (DUF762)
PF05559	Protein of unknown function (DUF763)
PF05561	Borrelia burgdorferi protein of unknown function (DUF764)
PF05570	Circovirus protein of unknown function (DUF765)
PF05571	Protein of unknown function (DUF766)
PF05589	Protein of unknown function (DUF768)
PF05590	Xylella fastidiosa protein of unknown function (DUF769)
PF01910	Domain of unknown function DUF77
PF05591	Protein of unknown function (DUF770)
PF05595	Domain of unknown function (DUF771)
PF05598	Transposase domain (DUF772)
PF05600	Protein of unknown function (DUF773)
PF05603	Protein of unknown function (DUF775)
PF05604	Protein of unknown function (DUF776)
PF05606	Borrelia burgdorferi protein of unknown function (DUF777)
PF05608	Protein of unknown function (DUF778)
PF05610	Protein of unknown function (DUF779)
PF05611	Caenorhabditis elegans protein of unknown function (DUF780)
PF05612	Mouse protein of unknown function (DUF781)
PF05614	Circovirus protein of unknown function (DUF782)
PF05619	Borrelia burgdorferi protein of unknown function (DUF787)
PF05620	Protein of unknown function (DUF788)
PF05623	Protein of unknown function (DUF789)
PF05626	Protein of unknown function (DUF790)
PF05631	Protein of unknown function (DUF791)
PF05632	Borrelia burgdorferi protein of unknown function (DUF792)
PF05633	Protein of unknown function (DUF793)
PF05638	Protein of unknown function (DUF796)
PF05643	Putative bacterial lipoprotein (DUF799)
PF05650	Domain of unknown function (DUF802)
PF05656	Protein of unknown function (DUF805)
PF05657	Protein of unknown function (DUF806)
PF05660	Coxiella burnetii protein of unknown function (DUF807)
PF05661	Protein of unknown function (DUF808)
PF05663	Protein of unknown function (DUF809)
PF05664	Protein of unknown function (DUF810)
PF05667	Protein of unknown function (DUF812)
PF05670	Domain of unknown function (DUF814)
PF05673	Protein of unknown function (DUF815)
PF05674	Baculovirus protein of unknown function (DUF816)
PF05675	Protein of unknown function (DUF817)
PF05677	Chlamydia CHLPS protein (DUF818)
PF05684	Protein of unknown function (DUF819)
PF05687	Plant protein of unknown function (DUF822)
PF05689	Salmonella repeat of unknown function (DUF823)
PF05688	Salmonella repeat of unknown function (DUF824)
PF05695	Plant protein of unknown function (DUF825)
PF05696	Protein of unknown function (DUF826)
PF05705	Eukaryotic protein of unknown function (DUF829)
PF05708	Orthopoxvirus protein of unknown function (DUF830)
PF05734	Herpesvirus protein of unknown function (DUF832)
PF05754	Domain of unknown function (DUF834)
PF05763	Protein of unknown function (DUF835)
PF05768	Glutaredoxin-like domain (DUF836)
PF05769	Protein of unknown function (DUF837)
PF05787	Bacterial protein of unknown function (DUF839)
PF05801	Lagovirus protein of unknown function (DUF840)
PF05811	Eukaryotic protein of unknown function (DUF842)
PF05814	Baculovirus protein of unknown function (DUF843)
PF05815	Baculovirus protein of unknown function (DUF844)
PF05820	Baculovirus protein of unknown function (DUF845)
PF05832	Eukaryotic protein of unknown function (DUF846)
PF05852	Gammaherpesvirus protein of unknown function (DUF848)
PF05853	Prokaryotic protein of unknown function (DUF849)
PF05867	Protein of unknown function (DUF851)
PF05872	Bacterial protein of unknown function (DUF853)
PF05895	Siphovirus protein of unknown function (DUF859)
PF01934	Protein of unknown function DUF86
PF05904	Plant protein of unknown function (DUF863)
PF05906	Herpesvirus-7 repeat of unknown function (DUF865)
PF05907	Eukaryotic protein of unknown function (DUF866)
PF05908	Protein of unknown function (DUF867)
PF05910	Plant protein of unknown function (DUF868)
PF05911	Plant protein of unknown function (DUF869)
PF01935	Domain of unknown function DUF87
PF05912	Caenorhabditis elegans protein of unknown function (DUF870)
PF05913	Bacterial protein of unknown function (DUF871)
PF05915	Eukaryotic protein of unknown function (DUF872)
PF05917	Helicobacter pylori protein of unknown function (DUF874)
PF05936	Bacterial protein of unknown function (DUF876)
PF05943	Protein of unknown function (DUF877)
PF05947	Bacterial protein of unknown function (DUF879)
PF05949	Bacterial protein of unknown function (DUF881)
PF05957	Bacterial protein of unknown function (DUF883)
PF05959	Nucleopolyhedrovirus protein of unknown function (DUF884)
PF05960	Bacterial protein of unknown function (DUF885)
PF01937	Protein of unknown function DUF89
PF05974	Domain of unknown function (DUF892)
PF05979	Bacterial protein of unknown function (DUF896)
PF05982	Domain of unknown function (DUF897)
PF05987	Bacterial protein of unknown function (DUF898)
PF05988	Bacterial protein of unknown function (DUF899)
PF05990	Alpha/beta hydrolase of unknown function (DUF900)
PF06001	Domain of Unknown Function (DUF902)
PF06004	Bacterial protein of unknown function (DUF903)
PF06005	Protein of unknown function (DUF904)
PF06006	Bacterial protein of unknown function (DUF905)
PF06012	Domain of Unknown Function (DUF908)
PF01939	Protein of unknown function DUF91
PF06014	Bacterial protein of unknown function (DUF910)
PF06023	Archaeal protein of unknown function (DUF911)
PF06024	Nucleopolyhedrovirus protein of unknown function (DUF912)
PF06025	Domain of Unknown Function (DUF913)
PF06027	Eukaryotic protein of unknown function (DUF914)
PF06028	Alpha/beta hydrolase of unknown function (DUF915)
PF06030	Bacterial protein of unknown function (DUF916)
PF06032	Protein of unknown function (DUF917)
PF06033	Nucleopolyhedrovirus protein of unknown function (DUF918)
PF06034	Nucleopolyhedrovirus protein of unknown function (DUF919)
PF01940	Integral membrane protein DUF92
PF06037	Bacterial protein of unknown function (DUF922)
PF06041	Bacterial protein of unknown function (DUF924)
PF06042	Bacterial protein of unknown function (DUF925)
PF06048	Domain of unknown function (DUF927)
PF06051	Domain of Unknown Function (DUF928)
PF06053	Domain of unknown function (DUF929)
PF06059	Domain of Unknown Function (DUF930)
PF06067	Domain of unknown function (DUF932)
PF06073	Bacterial protein of unknown function (DUF934)
PF06074	Protein of unknown function (DUF935)
PF06075	Plant protein of unknown function (DUF936)
PF06078	Bacterial protein of unknown function (DUF937)
PF06080	Protein of unknown function (DUF938)
PF06081	Bacterial protein of unknown function (DUF939)
PF11728	DUF939 C-terminal domain
PF06082	Bacterial putative lipoprotein (DUF940)
PF06092	Enterobacterial putative membrane protein (DUF943)
PF06097	Bacterial protein of unknown function (DUF945)
PF06101	Plant protein of unknown function (DUF946)
PF06102	Domain of unknown function (DUF947)
PF06103	Bacterial protein of unknown function (DUF948)
PF01944	Integral membrane protein DUF95
PF06106	Staphylococcus protein of unknown function (DUF950)
PF06107	Bacterial protein of unknown function (DUF951)
PF06108	Protein of unknown function (DUF952)
PF06110	Eukaryotic protein of unknown function (DUF953)
PF06114	Domain of unknown function (DUF955)
PF06115	Domain of unknown function (DUF956)
PF06117	Enterobacterial protein of unknown function (DUF957)
PF06121	Domain of Unknown Function (DUF959)
PF06124	Staphylococcal protein of unknown function (DUF960)
PF06125	Bacterial protein of unknown function (DUF961)
PF06127	Protein of unknown function (DUF962)
PF06131	Schizosaccharomyces pombe repeat of unknown function (DUF963)
PF06133	Protein of unknown function (DUF964)
PF06135	Bacterial protein of unknown function (DUF965)
PF06136	Domain of unknown function (DUF966)
PF06147	Protein of unknown function (DUF968)
PF06149	Protein of unknown function (DUF969)
PF06153	Protein of unknown function (DUF970)
PF06155	Protein of unknown function (DUF971)
PF06156	Protein of unknown function (DUF972)
PF06157	Protein of unknown function (DUF973)
PF06159	Protein of unknown function (DUF974)
PF06161	Protein of unknown function (DUF975)
PF06162	Caenorhabditis elegans protein of unknown function (DUF976)
PF06163	Bacterial protein of unknown function (DUF977)
PF06166	Protein of unknown function (DUF979)
PF01947	Protein of unknown function (DUF98)
PF06168	Protein of unknown function (DUF981)
PF06169	Protein of unknown function (DUF982)
PF06170	Protein of unknown function (DUF983)
PF06173	Protein of unknown function (DUF986)
PF06174	Protein of unknown function (DUF987)
PF06181	Protein of unknown function (DUF989)
PF01949	Protein of unknown function DUF99
PF06186	Protein of unknown function (DUF992)
PF06187	Protein of unknown function (DUF993)
PF06191	Protein of unknown function (DUF995)
PF06195	Protein of unknown function (DUF996)
PF06196	Protein of unknown function (DUF997)
PF06197	Protein of unknown function (DUF998)
PF06198	Protein of unknown function (DUF999)
PF12377	Duffy binding protein N terminal
PF05424	Duffy binding domain
PF10204	Dual oxidase maturation factor
PF00674	DUP family
PF01207	Dihydrouridine synthase (Dus)
PF06337	DUSP domain
PF00692	dUTPase
PF08761	dUTPase
PF08137	DVL family
PF08783	DWNN domain
PF01666	DX module
PF13288	DXP reductoisomerase C-terminal domain
PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
PF13292	1-deoxy-D-xylulose-5-phosphate synthase
PF09742	Dyggve-Melchior-Clausen syndrome protein
PF12455	Dynein associated protein
PF07426	Dynactin subunit p22
PF05502	Dynactin p62 family
PF01031	Dynamin central region
PF00350	Dynamin family
PF04912	Dynamitin
PF03028	Dynein heavy chain and region D6 of dynein motor
PF11540	Cytoplasmic dynein 1 intermediate chain 2
PF01221	Dynein light chain type 1
PF04261	Dyp-type peroxidase family
PF04440	Dysbindin (Dystrobrevin binding protein 1)
PF14432	DYW family of nucleic acid deaminases
PF07528	DZF domain
PF13815	Iguana/Dzip1-like DAZ-interacting protein N-terminal
PF12773	Double zinc ribbon
PF00122	E1-E2 ATPase
PF14463	E1 N-terminal domain
PF02221	ML domain
PF00676	Dehydrogenase E1 component
PF08199	Bacteriophage E2-like protein
PF02319	E2F/DP family winged-helix DNA-binding domain
PF11570	Coiled-coil receptor-binding R-domain of colicin E2
PF08825	E2 binding domain
PF02817	e3 binding domain
PF11547	E3 ubiquitin ligase EDD
PF13764	E3 ubiquitin-protein ligase UBR4
PF00518	Early Protein (E6)
PF00527	E7 protein, Early protein
PF12180	TSG101 and ALIX binding domain of CEP55
PF13935	Ead/Ea22-like protein
PF09816	RNA polymerase II transcription elongation factor
PF07904	Chromatin modification-related protein EAF7
PF00563	EAL domain
PF00892	EamA-like transporter family
PF04157	EAP30/Vps36 family
PF10238	E2F-associated phosphoprotein
PF01309	Equine arteritis virus small envelope glycoprotein
PF01683	EB module
PF03271	EB1-like C-terminal motif
PF05937	EB-1 Binding Domain
PF11556	Erythrocyte binding antigen 175
PF05505	Ebola nucleoprotein
PF05241	Emopamil binding protein
PF05890	Eukaryotic rRNA processing protein EBP2
PF09007	EBP50, C-terminal
PF02905	Epstein Barr virus nuclear antigen-1, DNA-binding domain
PF05009	Epstein-Barr virus nuclear antigen 3 (EBNA-3)
PF09459	Ethylbenzene dehydrogenase
PF07155	ECF-type riboflavin transporter, S component
PF00378	Enoyl-CoA hydratase/isomerase family
PF13766	2-enoyl-CoA Hydratase C-terminal region
PF14784	C-terminal domain of the ECSIT protein
PF02958	Ecdysteroid kinase
PF12855	Life-span regulatory factor
PF04736	Eclosion hormone
PF05782	Extracellular matrix protein 1 (ECM1)
PF15463	Extracellular mutant protein 11
PF13001	Proteasome stabiliser
PF12454	GPI-anchored cell wall organization protein
PF07669	Eco57I restriction-modification methylase
PF08463	EcoEI R protein C-terminal
PF12008	Type I restriction and modification enzyme - subunit R C terminal
PF02963	Restriction endonuclease EcoRI
PF09019	EcoRII C terminal
PF09217	Restriction endonuclease EcoRII, N-terminal
PF13651	Adenine-specific methyltransferase EcoRI
PF03974	Ecotin
PF14382	Exosome complex exonuclease RRP4 N-terminal region
PF05975	Bacterial ABC transporter protein EcsB
PF12787	EcsC protein family
PF06239	Evolutionarily conserved signalling intermediate in Toll pathway
PF06457	Ectatomin
PF08917	Transforming growth factor beta receptor 2 ectodomain
PF06339	Ectoine synthase
PF14381	Ethylene-responsive protein kinase Le-CTR1
PF10587	Eukaryotic elongation factor 1 beta central acidic region
PF00036	EF hand
PF14788	EF hand
PF09068	EF hand
PF09069	EF-hand
PF12763	Cytoskeletal-regulatory complex EF hand
PF13202	EF hand
PF13405	EF-hand domain
PF13499	EF-hand domain pair
PF13833	EF-hand domain pair
PF14658	EF-hand domain
PF09279	Phosphoinositide-specific phospholipase C, efhand-like
PF00647	Elongation factor 1 gamma, conserved domain
PF00736	EF-1 guanine nucleotide exchange domain
PF12199	Extracellular fibrinogen binding protein C terminal
PF14884	Type I membrane glycoproteins cell-cell fusogen
PF04518	Effector from type III secretion system
PF00679	Elongation factor G C-terminus
PF14492	Elongation Factor G, domain II
PF03764	Elongation factor G, domain IV
PF08726	Ca2+ insensitive EF hand
PF01132	Elongation factor P (EF-P) OB domain
PF08207	Elongation factor P (EF-P) KOW-like domain
PF11957	THO complex subunit 1 transcription elongation factor
PF08355	EF hand associated
PF08356	EF hand associated
PF00889	Elongation factor TS
PF00008	EGF-like domain
PF07974	EGF-like domain
PF12947	EGF domain
PF04863	Alliinase EGF-like domain
PF07645	Calcium-binding EGF domain
PF12946	MSP1 EGF domain 1
PF01303	Egg lysin (Sperm-lysin)
PF11430	Programmed cell death activator EGL-1
PF10622	Energy-converting hydrogenase B subunit P (EhbP)
PF06441	Epoxide hydrolase N terminus
PF09528	Ehrlichia tandem repeat (Ehrlichia_rpt)
PF15611	EH_Signature domain
PF07264	Etoposide-induced protein 2.4 (EI24)
PF00971	EIAV coat protein, gp90
PF11129	Rev protein of equine infectious anaemia virus
PF01176	Translation initiation factor 1A / IF-1
PF05470	Eukaryotic translation initiation factor 3 subunit 8 N-terminus
PF05091	Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
PF06273	Plant specific eukaryotic initiation factor 4B
PF01287	Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
PF01873	Domain found in IF2B/IF5
PF01912	eIF-6 family
PF08662	Eukaryotic translation initiation factor eIF2A
PF09173	Initiation factor eIF2 gamma, C terminal
PF12353	Eukaryotic translation initiation factor 3 subunit G
PF09440	eIF3 subunit 6 N terminal domain
PF12807	Translation initiation factor eIF3 subunit 135
PF08597	Translation initiation factor eIF3 subunit
PF10477	Nucleocytoplasmic shuttling protein for mRNA cap-binding EIF4E
PF07541	Eukaryotic translation initiation factor 2 alpha subunit
PF05456	Eukaryotic translation initiation factor 4E binding protein (EIF4EBP)
PF12152	Eukaryotic translation initiation factor 4G1
PF03608	PTS system enzyme II sorbitol-specific factor
PF03609	PTS system sorbose-specific iic component
PF03610	PTS system fructose IIA component
PF07663	Sorbitol phosphotransferase enzyme II C-terminus
PF03612	Sorbitol phosphotransferase enzyme II N-terminus
PF03611	PTS system sugar-specific permease component
PF03613	PTS system mannose/fructose/sorbose family IID component
PF04873	Ethylene insensitive 3
PF10371	Domain of unknown function
PF03317	ELF protein
PF12310	Transcription factor protein N terminal
PF05129	Transcription elongation factor Elf1 like
PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
PF02323	Egg-laying hormone precursor
PF00964	Elicitin
PF03789	ELK domain
PF10390	RNA polymerase II elongation factor ELL
PF01448	ELM2 domain
PF04727	ELMO/CED-12 family
PF01151	GNS1/SUR4 family
PF09285	Elongation factor P, C-terminal
PF06881	RNA polymerase II transcription factor SIII (Elongin) subunit A
PF10483	Elongator subunit Iki1
PF13934	Nuclear pore complex assembly
PF02488	Merozoite Antigen
PF03587	EMG1/NEP1 methyltransferase
PF07546	EMI domain
PF01105	emp24/gp25L/p24 family/GOLD
PF02990	Endomembrane protein 70
PF13536	Multidrug resistance efflux transporter
PF15362	Enamelin
PF12761	Actin cytoskeleton-regulatory complex protein END3
PF10576	Iron-sulfur binding domain of endonuclease III
PF07010	Endomucin
PF09195	Restriction endonuclease BglII
PF09194	Restriction endonuclease BsobI
PF09124	T4 recombination endonuclease VII, dimerisation
PF09233	Restriction endonuclease EcoRV
PF09254	Restriction endonuclease FokI, C terminal
PF09226	Restriction endonuclease HincII
PF09208	Restriction endonuclease MspI
PF09225	Restriction endonuclease PvuII
PF04231	Endonuclease I
PF04493	Endonuclease V
PF02945	Recombination endonuclease VII
PF01223	DNA/RNA non-specific endonuclease
PF13930	DNA/RNA non-specific endonuclease
PF14562	Restriction endonuclease BglI
PF10107	Endonuclease related to archaeal Holliday junction resolvase
PF09062	PI-PfuI Endonuclease subdomain
PF06482	Collagenase NC10 and Endostatin
PF04667	cAMP-regulated phosphoprotein/endosulfine conserved region
PF00322	Endothelin family
PF03944	delta endotoxin
PF00555	delta endotoxin
PF09131	Bacillus thuringiensis delta-Endotoxin, middle domain
PF03945	delta endotoxin, N-terminal domain
PF14436	Bacterial EndoU nuclease
PF12195	Beta barrel domain of bacteriophage endosialidase
PF12217	Catalytic beta propeller domain of bacteriophage endosialidase
PF12218	N terminal extension of bacteriophage endosialidase
PF12219	Catalytic domain of bacteriophage endosialidase
PF10525	Engrailed homeobox C-terminal signature domain
PF03272	Viral enhancin protein
PF13864	Calmodulin-binding
PF07055	Enoyl reductase FAD binding domain
PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
PF08247	ENOD40 protein
PF03386	Early nodulin 93 ENOD93 protein
PF00113	Enolase, C-terminal TIM barrel domain
PF03952	Enolase, N-terminal domain
PF12241	Trans-2-enoyl-CoA reductase catalytic region
PF03735	ENT domain
PF08951	Enterocin A Immunity
PF08085	Entericidin EcnA/B family
PF01375	Heat-labile enterotoxin alpha chain
PF01376	Heat-labile enterotoxin beta chain
PF08090	Heat stable E.coli enterotoxin 1
PF02048	Heat-stable enterotoxin ST
PF01417	ENTH domain
PF09590	Lentivirus surface glycoprotein
PF10163	Transcription factor e(y)2
PF12326	N-glycosylation protein
PF00811	Ependymin
PF14575	Ephrin type-A receptor 2 transmembrane domain
PF00812	Ephrin
PF01404	Ephrin receptor ligand binding domain
PF14654	Mucin, catalytic, TM and cytoplasmic tail region
PF05647	Tandem-repeating region of mucin, epiglycanin-like
PF01370	NAD dependent epimerase/dehydratase family
PF02350	UDP-N-acetylglucosamine 2-epimerase
PF13950	UDP-glucose 4-epimerase C-term subunit
PF10513	Enhancer of polycomb-like
PF09067	Erythropoietin receptor, ligand binding
PF00758	Erythropoietin/thrombopoietin
PF07268	Exported protein precursor (EppA/BapA)
PF14897	EpsG family
PF08998	Bacterial epsilon antitoxin
PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
PF03736	EPTP domain
PF11772	DNA-directed RNA polymerase subunit beta
PF08135	Major transforming protein E5 family
PF06502	Equine infectious anaemia virus S2 protein
PF01133	Enhancer of rudimentary
PF14755	Intracellular membrane remodeller
PF11838	ERAP1-like C-terminal domain
PF12497	Estrogen receptor beta
PF02732	ERCC4 domain
PF04404	ERF superfamily
PF03463	eRF1 domain 1
PF03464	eRF1 domain 2
PF03465	eRF1 domain 3
PF10256	Golgin subfamily A member 7/ERF4 family
PF03694	Erg28 like protein
PF04622	ERG2 and Sigma1 receptor like protein
PF01222	Ergosterol biosynthesis ERG4/ERG24 family
PF13850	Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
PF15002	ERK and JNK pathways, inhibitor
PF00769	Ezrin/radixin/moesin family
PF06308	23S rRNA methylase leader peptide (ErmC)
PF04137	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
PF07749	Endoplasmic reticulum protein ERp29, C-terminal domain
PF07912	ERp29, N-terminal domain
PF06780	Erp protein C-terminus
PF04148	Transmembrane adaptor Erv26
PF09277	Erythronolide synthase, docking
PF06795	Erythrovirus X protein
PF05139	Erythromycin esterase
PF08051	Erythromycin resistance leader peptide
PF08057	Erythromycin resistance leader peptide
PF00810	ER lumen protein retaining receptor
PF09751	Nuclear protein Es2
PF03238	ESAG protein
PF05871	ESCRT-II complex subunit
PF03433	EspA-like secreted protein
PF05802	Enterobacterial EspB protein
PF04806	EspF protein repeat
PF06872	EspG protein
PF13018	Extended Signal Peptide of Type V secretion system
PF12743	Oestrogen-type nuclear receptor final C-terminal
PF10661	WXG100 protein secretion system (Wss), protein EssA
PF10183	ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)
PF10374	Telomerase activating protein Est1
PF10373	Est1 DNA/RNA binding domain
PF00756	Putative esterase
PF10503	Esterase PHB depolymerase
PF14011	EspG family
PF01684	ET module
PF15350	Ewing's tumour-associated antigen 1 homologue
PF04800	ETC complex I subunit conserved region
PF04716	ETC complex I subunit conserved region
PF01012	Electron transfer flavoprotein domain
PF00766	Electron transfer flavoprotein FAD-binding domain
PF05187	Electron transfer flavoprotein-ubiquinone oxidoreductase
PF07110	EthD domain
PF06670	Microneme protein Etmic-2
PF09716	Malarial early transcribed membrane protein (ETRAMP)
PF00178	Ets-domain
PF04621	PEA3 subfamily ETS-domain transcription factor N terminal domain
PF03318	Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2
PF05842	Euplotes octocarinatus mating pheromone protein
PF06937	EURL protein
PF06277	Ethanolamine utilisation protein EutA
PF06751	Ethanolamine ammonia lyase large subunit (EutB)
PF05985	Ethanolamine ammonia-lyase light chain (EutC)
PF04346	Ethanolamine utilisation protein, EutH
PF03319	Ethanolamine utilisation protein EutN/carboxysome
PF06249	Ethanolamine utilisation protein EutQ
PF12297	Ellis van Creveld protein 2 like protein
PF01878	EVE domain
PF05399	Ectropic viral integration site 2A protein (EVI2A)
PF04777	Erv1 / Alr family
PF02472	Biopolymer transport protein ExbD/TolR
PF07825	Excisionase-like protein
PF05901	Excalibur calcium-binding domain
PF09810	Exonuclease V - a 5' deoxyribonuclease
PF03081	Exo70 exocyst complex subunit
PF06055	Exopolysaccharide synthesis, ExoD
PF06630	Enterobacterial exodeoxyribonuclease VIII
PF02601	Exonuclease VII, large subunit
PF02609	Exonuclease VII small subunit
PF04257	Exodeoxyribonuclease V, gamma subunit
PF08411	Exonuclease C-terminal
PF10447	Exosome component EXOSC1/CSL4
PF09721	Transmembrane exosortase (Exosortase_EpsH)
PF03016	Exostosin family
PF09101	Exotoxin A binding
PF09009	Exotoxin A catalytic
PF09102	Exotoxin A, targeting
PF03372	Endonuclease/Exonuclease/phosphatase family
PF14529	Endonuclease-reverse transcriptase
PF03124	EXS family
PF06904	Extensin-like protein C-terminus
PF02095	Extensin-like protein repeat
PF04554	Extensin-like region
PF11616	WD repeat binding protein EZH2
PF06160	Septation ring formation regulator, EzrA
PF06752	Enhancer of Polycomb C-terminus
PF06360	Euplotes raikovi mating pheromone
PF09645	F-112 protein
PF01267	F-actin capping protein alpha subunit
PF00646	F-box domain
PF12937	F-box-like
PF13013	F-box-like domain
PF00469	Negative factor, (F-Protein) or Nef
PF10791	Mitochondrial F1-F0 ATP synthase subunit F of fungi
PF01996	F420-0:Gamma-glutamyl ligase
PF03807	NADP oxidoreductase coenzyme F420-dependent
PF00754	F5/8 type C domain
PF08736	FERM adjacent (FA)
PF01557	Fumarylacetoacetate (FAA) hydrolase family
PF09298	Fumarylacetoacetase N-terminal
PF07977	FabA-like domain
PF14826	FACT complex subunit SPT16 N-terminal lobe domain
PF02913	FAD linked oxidases, C-terminal domain
PF12318	Membrane bound FAD containing D-sorbitol dehydrogenase
PF09403	Adhesion protein FadA
PF07840	FadR C-terminal domain
PF00667	FAD binding domain
PF00890	FAD binding domain
PF01494	FAD binding domain
PF01565	FAD binding domain
PF00941	FAD binding domain in molybdopterin dehydrogenase
PF00970	Oxidoreductase FAD-binding domain
PF03441	FAD binding domain of DNA photolyase
PF08022	FAD-binding domain
PF08021	Siderophore-interacting FAD-binding domain
PF12831	FAD dependent oxidoreductase
PF06574	FAD synthetase
PF08714	Formaldehyde-activating enzyme (Fae)
PF08392	FAE1/Type III polyketide synthase-like protein
PF04703	FaeA-like protein
PF06905	Fas apoptotic inhibitory molecule (FAIM1)
PF04385	Domain of unknown function, DUF529
PF15068	FAM101 family
PF15434	Family 104
PF14160	Centrosome-associated C terminus
PF14161	Centrosome-associated N terminus
PF15388	Protein Family FAM117
PF15067	FAM124 family
PF15010	Putative cell signalling
PF15129	FAM150 family
PF15069	FAM163 family
PF14981	FAM165 family
PF14851	FAM176 family
PF14774	FAM177 family
PF14816	Family of unknown function, FAM178
PF15173	FAM180 family
PF15238	FAM181
PF14886	FAM183A and FAM183B related
PF14977	FAM194 protein
PF14799	FAM195 family
PF15265	FAM196 family
PF15051	FAM198 protein
PF15206	FAM209 family
PF15342	FAM212 family
PF15107	FAM216B protein family
PF15344	FAM217 family
PF15260	Protein family FAM219A
PF15487	FAM220 family
PF15258	Protein family of FAM222A
PF15193	FAM24 family
PF14642	FAM47 family
PF15242	Family of FAM53
PF15396	Protein Family FAM60A
PF14967	FAM70 protein
PF14976	FAM72 protein
PF15026	FAM74 protein
PF14650	FAM75 family
PF14904	Family of unknown function
PF14648	FAM91 C-terminus
PF14647	FAM91 N-terminus
PF06730	FAM92 protein
PF15146	Fanconi anemia-associated
PF14631	Fanconi anaemia protein FancD2 nuclease
PF11107	Fanconi anemia group F protein (FANCF)
PF14679	FANCI helical domain 1
PF14680	FANCI helical domain 2
PF14675	FANCI solenoid 1
PF14674	FANCI solenoid 1 cap
PF14676	FANCI solenoid 2
PF14677	FANCI solenoid 3
PF14678	FANCI solenoid 4
PF11793	FANCL C-terminal domain
PF03511	Fanconi anaemia group A protein
PF02106	Fanconi anaemia group C protein
PF07174	Fibronectin-attachment protein (FAP)
PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
PF04750	FAR-17a/AIG1-like protein
PF03101	FAR1 DNA-binding domain
PF01581	FMRFamide related peptide family
PF02469	Fasciclin domain
PF06268	Fascin domain
PF06743	FAST kinase-like protein, subdomain 1
PF08368	FAST kinase-like protein, subdomain 2
PF02259	FAT domain
PF02260	FATC domain
PF00487	Fatty acid desaturase
PF03405	Fatty acid desaturase
PF11510	Fanconi Anaemia group E protein FANCE
PF04116	Fatty acid hydroxylase superfamily
PF02504	Fatty acid synthesis protein
PF04300	F-box associated region
PF07734	F-box associated
PF07735	F-box associated
PF08268	F-box associated domain
PF08387	FBD
PF07299	Fibronectin-binding protein (FBP)
PF05833	Fibronectin-binding protein A N-terminus (FbpA)
PF00316	Fructose-1-6-bisphosphatase
PF06874	Firmicute fructose-1,6-bisphosphatase
PF01950	Fructose-1,6-bisphosphatase
PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
PF07367	Fungal fruit body lectin
PF08341	Fibronectin-binding protein signal sequence
PF07729	FCD domain
PF04900	Fcf1
PF08698	Fcf2 pre-rRNA processing
PF00611	Fes/CIP4, and EFC/F-BAR homology domain
PF10862	FcoT-like thioesterase domain
PF09309	FCP1, C-terminal
PF09242	Flavocytochrome c sulphide dehydrogenase, flavin-binding
PF12892	T surface-antigen of pili
PF15215	Follicular dendritic cell secreted peptide
PF09532	FDF domain
PF02634	FdhD/NarQ family
PF04216	Protein involved in formate dehydrogenase formation
PF11390	NADH-dependant formate dehydrogenase delta subunit FdsD
PF05523	WxcM-like, C-terminal
PF03147	Ferredoxin-fold anticodon binding domain
PF00465	Iron-containing alcohol dehydrogenase
PF13685	Iron-containing alcohol dehydrogenase
PF04384	Iron-sulphur cluster assembly
PF01521	Iron-sulphur cluster biosynthesis
PF07692	Low iron-inducible periplasmic protein
PF01032	FecCD transport family
PF04773	FecR protein
PF09252	Allergen Fel d I-B chain
PF05666	Fels-1 Prophage Protein-like
PF02388	FemAB family
PF04023	FeoA domain
PF07664	Ferrous iron transport protein B C terminus
PF02421	Ferrous iron transport protein B
PF09012	FeoC like transcriptional regulator
PF00111	2Fe-2S iron-sulfur cluster binding domain
PF01799	[2Fe-2S] binding domain
PF13085	2Fe-2S iron-sulfur cluster binding domain
PF13510	2Fe-2S iron-sulfur cluster binding domain
PF04324	BFD-like [2Fe-2S] binding domain
PF00037	4Fe-4S binding domain
PF13237	4Fe-4S dicluster domain
PF13247	4Fe-4S dicluster domain
PF13353	4Fe-4S single cluster domain
PF13370	4Fe-4S single cluster domain
PF13394	4Fe-4S single cluster domain
PF13459	4Fe-4S single cluster domain
PF13484	4Fe-4S double cluster binding domain
PF13534	4Fe-4S dicluster domain
PF13746	4Fe-4S dicluster domain
PF06902	Divergent 4Fe-4S mono-cluster
PF12797	4Fe-4S binding domain
PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
PF14697	4Fe-4S dicluster domain
PF12798	4Fe-4S binding domain
PF12800	4Fe-4S binding domain
PF12801	4Fe-4S binding domain
PF12837	4Fe-4S binding domain
PF12838	4Fe-4S dicluster domain
PF13183	4Fe-4S dicluster domain
PF13187	4Fe-4S dicluster domain
PF00142	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
PF08165	FerA (NUC095) domain
PF08150	FerB (NUC096) domain
PF08151	FerI (NUC094) domain
PF09380	FERM C-terminal PH-like domain
PF00373	FERM central domain
PF09379	FERM N-terminal domain
PF01794	Ferric reductase like transmembrane component
PF00210	Ferritin-like domain
PF12902	Ferritin-like
PF13668	Ferritin-like domain
PF00762	Ferrochelatase
PF04060	Putative Fe-S cluster
PF08609	Nucleotide exchange factor Fes1
PF02941	Ferredoxin thioredoxin reductase variable alpha chain
PF02943	Ferredoxin thioredoxin reductase catalytic beta chain
PF07763	FEZ-like protein
PF06818	Fez1
PF05996	Ferredoxin-dependent bilin reductase
PF01325	Iron dependent repressor, N-terminal DNA binding domain
PF02742	Iron dependent repressor, metal binding and dimerisation domain
PF02906	Iron only hydrogenase large subunit, C-terminal domain
PF02256	Iron hydrogenase small subunit
PF01846	FF domain
PF01839	FG-GAP repeat
PF14312	FG-GAP repeat
PF05013	N-formylglutamate amidohydrolase
PF03781	Sulfatase-modifying factor enzyme 1
PF00167	Fibroblast growth factor
PF06473	FGF binding protein 1 (FGF-BP1)
PF02782	FGGY family of carbohydrate kinases, C-terminal domain
PF00370	FGGY family of carbohydrate kinases, N-terminal domain
PF02181	Formin Homology 2 Domain
PF00498	FHA domain
PF00771	FHIPEP family
PF06276	Ferric iron reductase FhuF-like transporter
PF11575	FhuF 2Fe-2S C-terminal domain
PF05427	Acidic fibroblast growth factor binding (FIBP)
PF01269	Fibrillarin
PF10113	Fibrillarin-like archaeal protein
PF12160	Fibrinogen alpha C domain
PF08017	Fibrinogen binding protein
PF00147	Fibrinogen beta and gamma chains, C-terminal globular domain
PF07921	Fibritin C-terminal region
PF07294	Fibroin P25
PF08702	Fibrinogen alpha/beta chain family
PF09603	Fibrobacter succinogenes major domain (Fib_succ_major)
PF02661	Fic/DOC family
PF13784	Fic/DOC family N-terminal
PF12351	Ca2+ regulator and membrane fusion protein Fig1
PF13553	Function to find
PF06837	Fijivirus P9-2 protein
PF05880	Fijivirus 64 kDa capsid protein
PF03516	Filaggrin
PF00038	Intermediate filament protein
PF04732	Intermediate filament head (DNA binding) region
PF00630	Filamin/ABP280 repeat
PF01611	Filovirus glycoprotein
PF06389	Filovirus membrane-associated protein VP24
PF02097	Filoviridae VP35
PF05594	Haemagluttinin repeat
PF13332	Haemagluttinin repeat
PF09222	Fimbrial adhesin F17-AG, lectin domain
PF00419	Fimbrial protein
PF04449	CS1 type fimbrial major subunit
PF02432	Fimbrial, major and minor subunit
PF14481	Type 4 fimbrial biogenesis protein PilY2
PF15495	Major fimbrial subunit protein type IV, Fimbrillin, C-terminal
PF09160	FimH, mannose binding
PF09766	Fms-interacting protein
PF12602	Fertility inhibition protein N terminal
PF05182	Fip1 motif
PF14853	Fis1 C-terminal tetratricopeptide repeat
PF14852	Fis1 N-terminal tetratricopeptide repeat
PF14484	Fish-specific NACHT associated domain
PF08495	FIST N domain
PF10442	FIST C domain
PF07554	Uncharacterised Sugar-binding Domain
PF11614	IG-like fold at C-terminal of FixG, putative oxidoreductase
PF05751	FixH
PF02433	Cytochrome C oxidase, mono-heme subunit/FixO
PF14715	N-terminal domain of cytochrome oxidase-cbb3, FixP
PF05545	Cbb3-type cytochrome oxidase component FixQ
PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
PF14288	1,3-beta-glucan synthase subunit FKS1, domain-1
PF04620	Flagellar filament outer layer protein Flaa
PF05377	Flagella accessory protein C (FlaC)
PF07559	Flagellar basal body protein FlaE
PF07309	Flagellar protein FlaF
PF03646	FlaG protein
PF03614	Repressor of phase-1 flagellin
PF05149	Paraflagellar rod protein
PF00700	Bacterial flagellin C-terminal helical region
PF08884	Flagellin D3 domain
PF07196	Flagellin hook IN motif
PF00669	Bacterial flagellin N-terminal helical region
PF01613	Flavin reductase like domain
PF01003	Flavivirus capsid protein C
PF07652	Flavivirus DEAD domain
PF00869	Flavivirus glycoprotein, central and dimerisation domains
PF02832	Flavivirus glycoprotein, immunoglobulin-like domain
PF01004	Flavivirus envelope glycoprotein M
PF00948	Flavivirus non-structural Protein NS1
PF01005	Flavivirus non-structural protein NS2A
PF01002	Flavivirus non-structural protein NS2B
PF01350	Flavivirus non-structural protein NS4A
PF01349	Flavivirus non-structural protein NS4B
PF00972	Flavivirus RNA-directed RNA polymerase
PF01570	Flavivirus polyprotein propeptide
PF00258	Flavodoxin
PF02525	Flavodoxin-like fold
PF12641	Flavodoxin domain
PF12682	Flavodoxin
PF12724	Flavodoxin domain
PF07972	NrdI Flavodoxin like
PF01687	Riboflavin kinase
PF02441	Flavoprotein
PF06289	Flagellar protein (FlbD)
PF07378	Flagellar protein FlbT
PF06490	Flagellar regulatory protein FleQ
PF00286	Viral coat protein
PF08358	Carlavirus coat
PF03963	Flagellar hook capping protein - N-terminal region
PF13860	FlgD Ig-like domain
PF13861	FlgD Tudor-like domain
PF02107	Flagellar L-ring protein
PF02119	Flagellar P-ring protein
PF04316	Anti-sigma-28 factor, FlgM
PF05130	FlgN protein
PF06429	Flagellar basal body rod FlgEFG protein C-terminal
PF00460	Flagella basal body rod protein
PF02120	Flagellar hook-length control protein FliK
PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)
PF05280	Flagellar transcriptional activator (FlhC)
PF05247	Flagellar transcriptional activator (FlhD)
PF06366	Flagellar protein FlhE
PF12445	Flagellin protein
PF12613	Flagellin structural protein
PF07195	Flagellar hook-associated protein 2 C-terminus
PF02465	Flagellar hook-associated protein 2 N-terminus
PF02049	Flagellar hook-basal body complex protein FliE
PF01706	FliG C-terminal domain
PF14841	FliG middle domain
PF14842	FliG N-terminal domain
PF02108	Flagellar assembly protein FliH
PF02050	Flagellar FliJ protein
PF03748	Flagellar basal body-associated protein FliL
PF10306	Hypothetical protein FLILHELTA
PF02154	Flagellar motor switch protein FliM
PF04347	Flagellar biosynthesis protein, FliO
PF00813	FliP family
PF02561	Flagellar protein FliS
PF05400	Flagellar protein FliT
PF02623	FliW protein
PF10768	Class II flagellar assembly regulator
PF10182	Flo11 domain
PF00624	Flocculin repeat
PF13928	Flocculin type 3 repeat
PF01698	Floricaula / Leafy protein
PF02662	Methyl-viologen-reducing hydrogenase, delta subunit
PF05202	Recombinase Flp protein
PF04964	Flp/Fap pilin component
PF03930	Recombinase Flp protein N-terminus
PF02947	flt3 ligand
PF10109	Mu-like prophage FluMu protein gp41
PF04772	Influenza B matrix protein 2 (BM2)
PF02942	Influenza B non-structural protein (NS1)
PF03506	Influenza C non-structural protein (NS1)
PF03555	Influenza C non-structural protein (NS2)
PF00598	Influenza Matrix protein (M1)
PF08289	Influenza Matrix protein (M1) C-terminal domain
PF00599	Influenza Matrix protein (M2)
PF00506	Influenza virus nucleoprotein
PF00600	Influenza non-structural protein (NS1)
PF00601	Influenza non-structural protein (NS2)
PF00603	Influenza RNA-dependent RNA polymerase subunit PA
PF00602	Influenza RNA-dependent RNA polymerase subunit PB1
PF00604	Influenza RNA-dependent RNA polymerase subunit PB2
PF14282	FlxA-like protein
PF04500	FLYWCH zinc finger domain
PF15423	FLYWCH-type zinc finger-containing protein
PF03069	Acetamidase/Formamidase family
PF02663	FmdE, Molybdenum formylmethanofuran dehydrogenase operon
PF04205	FMN-binding domain
PF04299	Putative FMN-binding domain
PF01070	FMN-dependent dehydrogenase
PF03358	NADPH-dependent FMN reductase
PF00743	Flavin-binding monooxygenase-like
PF10344	Mitochondrial protein from FMP27
PF10347	RNA pol II promoter Fmp27 protein domain
PF10305	RNA pol II promoter Fmp27 protein domain
PF10359	RNA pol II promoter Fmp27 protein domain
PF07091	Ribosomal RNA methyltransferase (FmrO)
PF00039	Fibronectin type I domain
PF00040	Fibronectin type II domain
PF00041	Fibronectin type III domain
PF14310	Fibronectin type III-like domain
PF14686	Polysaccharide lyase family 4, domain II
PF13287	Fn3 associated
PF05725	FNIP Repeat
PF14638	Folliculin-interacting protein C-terminus
PF14637	Folliculin-interacting protein middle domain
PF14636	Folliculin-interacting protein N-terminus
PF02986	Fibronectin binding repeat
PF03274	Foamy virus BEL 1/2 protein
PF03408	Foamy virus envelope protein
PF03623	Focal adhesion targeting region
PF11817	Foie gras liver health family 1
PF02980	Restriction endonuclease FokI, catalytic domain
PF02981	Restriction endonuclease FokI, recognition domain
PF01770	Reduced folate carrier
PF03024	Folate receptor family
PF02152	Dihydroneopterin aldolase
PF11704	Vesicle coat protein involved in Golgi to plasma membrane transport
PF09289	Follistatin/Osteonectin-like EGF domain
PF09398	FOP N terminal dimerisation domain
PF13865	C-terminal duplication domain of Friend of PRMT1
PF00250	Fork head domain
PF08430	Forkhead N-terminal region
PF09163	Formate dehydrogenase N, transmembrane
PF02911	Formyl transferase, C-terminal domain
PF00551	Formyl transferase
PF01226	Formate/nitrite transporter
PF12414	Calcitonin gene-related peptide regulator C terminal
PF09758	Uncharacterised conserved protein
PF06963	Ferroportin1 (FPN1)
PF10621	F420H2 dehydrogenase subunit FpoO
PF08445	FR47-like protein
PF09725	Folate-sensitive fragile site protein Fra10Ac1
PF10277	Frag1/DRAM/Sfk1 family
PF05994	Cytoplasmic Fragile-X interacting family
PF14407	Ribosomally synthesized peptide prototyped by Frankia Franean1_4349.
PF01491	Frataxin-like domain
PF03197	Bacteriophage FRD2 protein
PF08867	FRG domain
PF06229	FRG1-like family
PF15315	Facioscapulohumeral muscular dystrophy candidate 2
PF04432	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus
PF04422	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term
PF07899	Frigida-like protein
PF02434	Fringe-like
PF01534	Frizzled/Smoothened family membrane region
PF06901	RTX iron-regulated protein FrpC
PF09421	Frequency clock protein
PF03881	Fructosamine kinase
PF10479	Fragile site-associated protein C-terminus
PF03959	Serine hydrolase (FSH1)
PF15554	FSIP1 family
PF13955	Toxin Fst, type I toxin-antitoxin system
PF13095	Kinetochore Sim4 complex subunit FTA2
PF13093	Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
PF02971	Formiminotransferase domain
PF04961	Formiminotransferase-cyclodeaminase
PF07837	Formiminotransferase domain, N-terminal subdomain
PF01827	FTH domain
PF01268	Formate--tetrahydrofolate ligase
PF12934	FTO C-terminal domain
PF12933	FTO catalytic domain
PF07504	Fungalysin/Thermolysin Propeptide Motif
PF01913	Formylmethanofuran-tetrahydromethanopterin formyltransferase
PF03239	Iron permease FTR1 family
PF02741	FTR, proximal lobe
PF14450	Cell division protein FtsA
PF06480	FtsH Extracellular
PF01728	FtsJ-like methyltransferase
PF09397	Ftsk gamma domain
PF01580	FtsK/SpoIIIE family
PF12538	DNA transporter
PF04999	Cell division protein FtsL
PF03799	Cell division protein FtsQ
PF01098	Cell cycle protein
PF02687	FtsX-like permease family
PF12327	FtsZ family, C-terminal domain
PF03867	Fushi tarazu (FTZ), N-terminal region
PF07959	L-fucokinase
PF02952	L-fucose isomerase, C-terminal domain
PF07881	L-fucose isomerase, first N-terminal domain
PF07882	L-fucose isomerase, second N-terminal domain
PF10415	Fumarase C C-terminus
PF02300	Fumarate reductase subunit C
PF02313	Fumarate reductase subunit D
PF03630	Fumble
PF05681	Fumarate hydratase (Fumerase)
PF05683	Fumarase C-terminus
PF04930	FUN14 family
PF07938	Fungal fucose-specific lectin
PF04082	Fungal specific transcription factor domain
PF11951	Fungal specific transcription factor domain
PF05933	Fungal ATP synthase protein 8 (A6L)
PF01475	Ferric uptake regulator family
PF00757	Furin-like cysteine rich region
PF04632	Fusaric acid resistance protein family
PF12805	FUSC-like inner membrane protein yccS
PF13515	Fusaric acid resistance protein-like
PF00523	Fusion glycoprotein F0
PF01621	Cell fusion glycoprotein K
PF09259	Fungal immunomodulatory protein Fve
PF14922	Protein of unknown function
PF14670	Coagulation Factor Xa inhibitory site
PF12235	Fragile X-related 1 protein C terminal
PF04186	FxsA cytoplasmic membrane protein
PF09538	Protein of unknown function (FYDLN_acid)
PF05965	F/Y rich C-terminus
PF05964	F/Y-rich N-terminus
PF07078	Forty-two-three protein
PF01363	FYVE zinc finger
PF02318	FYVE-type zinc finger
PF01392	Fz domain
PF04799	fzo-like conserved region
PF08919	F-actin binding
PF01115	F-actin capping protein, beta subunit
PF01116	Fructose-bisphosphate aldolase class-II
PF12803	mRNA (guanine-7-)methyltransferase (G-7-MTase)
PF00503	G-protein alpha subunit
PF00631	GGL domain
PF01585	G-patch domain
PF12656	DExH-box splicing factor binding site
PF15103	G0/G1 switch protein 2
PF01125	G10 protein
PF07474	G2F domain
PF02660	Glycerol-3-phosphate acyltransferase
PF04309	Glycerol-3-phosphate responsive antiterminator
PF07501	G5 domain
PF15096	G6B family
PF10786	Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
PF10162	G8 domain
PF01468	GA module
PF04114	Gaa1-like, GPI transamidase component
PF11620	GA-binding protein alpha chain
PF02938	GAD domain
PF08887	GAD-like domain
PF01590	GAF domain
PF13185	GAF domain
PF13492	GAF domain
PF13975	gag-polyprotein putative aspartyl protease
PF09237	GAGA factor
PF06217	GAGA binding protein-like family
PF05831	GAGE protein
PF01140	Matrix protein (MA), p15
PF02337	Retroviral GAG p10 protein
PF01141	Gag polyprotein, inner coat protein p12
PF08723	Gag protein p15
PF00540	gag gene protein p17 (matrix protein)
PF02228	Major core protein p19
PF00607	gag gene protein p24 (core nucleocapsid protein)
PF02093	Gag P30 core shell protein
PF08705	Gag protein p6
PF13976	GAG-pre-integrase domain
PF03276	Spumavirus gag protein
PF06990	Galactose-3-O-sulfotransferase
PF00337	Galactoside-binding lectin
PF03902	Gal4-like dimerisation domain
PF01762	Galactosyltransferase
PF01296	Galanin
PF10509	Galactokinase galactose-binding signature
PF02052	Gallidermin
PF01087	Galactose-1-phosphate uridyl transferase, N-terminal domain
PF02744	Galactose-1-phosphate uridyl transferase, C-terminal domain
PF02140	Galactose binding lectin domain
PF13802	Galactose mutarotase-like
PF06064	Host-nuclease inhibitor protein Gam
PF00304	Gamma-thionin family
PF11770	GRB2-binding adapter (GAPT)
PF04410	Gar1/Naf1 RNA binding region
PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
PF02843	Phosphoribosylglycinamide synthetase, C domain
PF02844	Phosphoribosylglycinamide synthetase, N domain
PF13851	Growth-arrest specific micro-tubule binding
PF02187	Growth-Arrest-Specific Protein 2 Domain
PF02704	Gibberellin regulated protein
PF04598	Gasdermin family
PF00918	Gastrin/cholecystokinin family
PF00741	Gas vesicle protein
PF01304	Gas vesicles protein GVPc repeated domain
PF03127	GAT domain
PF00320	GATA zinc finger
PF05349	GATA-type transcription activator, N-terminal
PF00117	Glutamine amidotransferase class-I
PF00310	Glutamine amidotransferases class-II
PF07685	CobB/CobQ-like glutamine amidotransferase domain
PF13230	Glutamine amidotransferases class-II
PF13507	CobB/CobQ-like glutamine amidotransferase domain
PF13522	Glutamine amidotransferase domain
PF13537	Glutamine amidotransferase domain
PF02934	GatB/GatE catalytic domain
PF02637	GatB domain
PF07670	Nucleoside recognition
PF04572	Alpha 1,4-glycosyltransferase conserved region
PF12215	beta-Glucocerebrosidase 2 N terminal
PF02263	Guanylate-binding protein, N-terminal domain
PF08363	Glucan-binding protein C
PF02841	Guanylate-binding protein, C-terminal domain
PF02425	Paralytic/GBP/PSP peptide
PF02526	Glycophorin-binding protein
PF08481	GBS Bsp-like repeat
PF12786	GB virus C genotype envelope
PF07699	GCC2 and GCC3
PF04189	Gcd10p family
PF08704	tRNA methyltransferase complex GCD14 subunit
PF14801	tRNA methyltransferase complex GCD14 subunit N-term
PF07842	GC-rich sequence DNA-binding factor-like protein
PF02649	Type I GTP cyclohydrolase folE2
PF13324	Grap2 and cyclin-D-interacting
PF07802	GCK domain
PF03615	GCM motif protein
PF06320	GCN5-like protein 1 (GCN5L1)
PF15328	Putative GRINL1B complex locus protein 2
PF14609	gamma-Tubulin ring complex non-core subunit mod21
PF04551	GcpE protein
PF02155	Glucocorticoid receptor
PF12550	Transcriptional activator of glycolytic enzymes
PF07750	GcrA cell cycle regulator
PF03074	Glutamate-cysteine ligase
PF04107	Glutamate-cysteine ligase family 2(GCS2)
PF01597	Glycine cleavage H-protein
PF01571	Aminomethyltransferase folate-binding domain
PF08669	Glycine cleavage T-protein C-terminal barrel domain
PF09694	Bacterial protein of unknown function (Gcw_chp)
PF01150	GDA1/CD39 (nucleoside phosphatase) family
PF02347	Glycine cleavage system P-protein
PF06202	Amylo-alpha-1,6-glucosidase
PF12439	Glycogen debranching enzyme N terminal
PF14742	N-terminal domain of (some) glycogen debranching enzymes
PF12466	Glutamate dehydrogenase N terminal
PF00996	GDP dissociation inhibitor
PF02351	GDNF/GAS1 domain
PF03009	Glycerophosphoryl diester phosphodiesterase family
PF13653	Glycerophosphoryl diester phosphodiesterase family
PF14345	GDYXXLXY protein
PF04295	D-galactarate dehydratase / Altronate hydrolase, C terminus
PF02212	Dynamin GTPase effector domain
PF00626	Gelsolin repeat
PF06372	Gemin6 protein
PF11095	Gem-associated protein 7 (Gemin7)
PF15348	Gemini of Cajal bodies-associated protein 8
PF07412	Geminin
PF04807	Geminivirus AC4/5 conserved region
PF08464	Geminivirus AC4/5 conserved region
PF00799	Geminivirus Rep catalytic domain
PF08283	Geminivirus rep protein central domain
PF01440	Geminivirus AL2 protein
PF01407	Geminivirus AL3 protein
PF00845	Geminivirus BL1 movement protein
PF01492	Geminivirus C4 protein
PF00844	Geminivirus coat protein/nuclear export factor BR1 family
PF01708	Geminivirus putative movement protein
PF01524	Geminivirus V1 protein
PF02053	Gene 66 (IR5) protein
PF03323	Bacillus/Clostridium GerA spore germination protein
PF00196	Bacterial regulatory proteins, luxR family
PF10646	Sporulation and spore germination
PF10676	Spore germination protein gerPA/gerPF
PF10803	Spore germination GerPB
PF10737	Spore germination protein GerPC
PF08690	GET complex subunit GET2
PF05671	GETHR pentapeptide repeat (5 copies)
PF04828	Glutathione-dependent formaldehyde-activating enzyme
PF01408	Oxidoreductase family, NAD-binding Rossmann fold
PF02894	Oxidoreductase family, C-terminal alpha/beta domain
PF01353	Green fluorescent protein
PF06399	GTP cyclohydrolase I feedback regulatory protein (GFRP)
PF14843	Growth factor receptor domain IV
PF00990	GGDEF domain
PF05165	GGDN family
PF14057	GGGtGRT protein
PF14410	HNH/ENDO VII superfamily nuclease with conserved GHE residues
PF14741	N-terminal glycosyl-hydrolase-114-associated domain
PF03321	GH3 auxin-responsive promoter
PF14509	Glycosyl-hydrolase 97 C-terminal, oligomerisation
PF14508	Glycosyl-hydrolase 97 N-terminal
PF12772	Growth hormone receptor binding
PF11308	Glycosyl hydrolases related to GH101 family, GHL1-GHL3
PF14882	Hypothetical glycosyl hydrolase 12
PF14883	Hypothetical glycosyl hydrolase family 13
PF14885	Hypothetical glycosyl hydrolase family 15
PF14872	Hypothetical glycoside hydrolase 5
PF14871	Hypothetical glycosyl hydrolase 6
PF08544	GHMP kinases C terminal
PF00288	GHMP kinases N terminal domain
PF01134	Glucose inhibited division protein A
PF13932	GidA associated domain 3
PF02527	rRNA small subunit methyltransferase G
PF12483	E3 Ubiquitin ligase
PF13856	ATP-binding sugar transporter from pro-phage
PF08388	Group II intron, maturase-specific domain
PF03227	Gamma interferon inducible lysosomal thiol reductase (GILT)
PF10764	Inhibitor of sigma-G Gin
PF12205	G protein-coupled receptor kinase-interacting protein 1 C term
PF11710	G protein-coupled glucose receptor regulating Gpa2
PF11970	G protein-coupled glucose receptor regulating Gpa2 C-term
PF08518	Spa2 homology domain (SHD) of GIT
PF01541	GIY-YIG catalytic domain
PF03359	Guanylate-kinase-associated protein (GKAP) protein
PF00594	Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain
PF11397	Glycosyltransferase (GlcNAc)
PF07221	N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)
PF14109	GldH lipoprotein
PF12080	GldM C-terminal domain
PF12081	GldM N-terminal domain
PF07817	GLE1-like protein
PF03275	UDP-galactopyranose mutase
PF08971	Glycogen synthesis protein
PF13016	Cys-rich Gliadin N-terminal
PF00120	Glutamine synthetase, catalytic domain
PF03951	Glutamine synthetase, beta-Grasp domain
PF08335	GlnD PII-uridylyltransferase
PF03710	Glutamate-ammonia ligase adenylyltransferase
PF00042	Globin
PF10793	Gloverin-like protein
PF06942	GlpM protein
PF08718	Glycolipid transfer protein (GLTP)
PF15249	Glioma tumor suppressor candidate region
PF01744	GLTT repeat (6 copies)
PF03616	Sodium/glutamate symporter
PF02686	Glu-tRNAGln amidotransferase C subunit
PF02364	1,3-beta-glucan synthase component
PF09136	Glucodextranase, domain B
PF09137	Glucodextranase, domain N
PF02685	Glucokinase
PF13618	Gluconate 2-dehydrogenase subunit 3
PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
PF14264	Glucosyl transferase GtrII
PF07581	The GLUG motif
PF10606	Homer-binding domain of metabotropic glutamate receptor
PF04960	Glutaminase
PF00462	Glutaredoxin
PF04399	Glutaredoxin 2, C terminal domain
PF03157	High molecular weight glutenin subunit
PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
PF05096	Glutamine cyclotransferase
PF04262	Glutamate-cysteine ligase
PF01645	Conserved region in glutamate synthase
PF04898	Glutamate synthase central domain
PF12764	Glycine-rich region of argonaut
PF13488	Glycine zipper
PF13436	Glycine-zipper containing OmpA-like membrane domain
PF13441	YMGG-like Gly-zipper
PF05242	Glycosylation-dependent cell adhesion molecule 1 (GlyCAM-1)
PF10091	Putative glucoamylase
PF05693	Glycogen synthase
PF14845	beta-acetyl hexosaminidase like
PF06475	Putative glycolipid-binding
PF00274	Fructose-bisphosphate aldolase class-I
PF01102	Glycophorin A
PF03409	Transmembrane glycoprotein
PF00606	Herpesvirus Glycoprotein B
PF00802	Pneumovirus attachment glycoprotein G
PF00534	Glycosyl transferases group 1
PF00535	Glycosyl transferase family 2
PF00591	Glycosyl transferase family, a/b domain
PF00953	Glycosyl transferase family 4
PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
PF02885	Glycosyl transferase family, helical bundle domain
PF00232	Glycosyl hydrolase family 1
PF00331	Glycosyl hydrolase family 10
PF12899	Alkaline and neutral invertase
PF12905	Endo-alpha-N-acetylgalactosaminidase
PF05838	Glycosyl hydrolase 108
PF00457	Glycosyl hydrolases family 11
PF03537	Glycoside-hydrolase family GH114
PF01670	Glycosyl hydrolase family 12
PF01373	Glycosyl hydrolase family 14
PF00723	Glycosyl hydrolases family 15
PF00722	Glycosyl hydrolases family 16
PF00332	Glycosyl hydrolases family 17
PF00704	Glycosyl hydrolases family 18
PF00182	Chitinase class I
PF00703	Glycosyl hydrolases family 2
PF00728	Glycosyl hydrolase family 20, catalytic domain
PF02838	Glycosyl hydrolase family 20, domain 2
PF01183	Glycosyl hydrolases family 25
PF02156	Glycosyl hydrolase family 26
PF00295	Glycosyl hydrolases family 28
PF02836	Glycosyl hydrolases family 2, TIM barrel domain
PF02837	Glycosyl hydrolases family 2, sugar binding domain
PF00933	Glycosyl hydrolase family 3 N terminal domain
PF02055	O-Glycosyl hydrolase family 30
PF01055	Glycosyl hydrolases family 31
PF08244	Glycosyl hydrolases family 32 C terminal
PF00251	Glycosyl hydrolases family 32 N-terminal domain
PF01301	Glycosyl hydrolases family 35
PF01074	Glycosyl hydrolases family 38 N-terminal domain
PF07748	Glycosyl hydrolases family 38 C-terminal domain
PF01229	Glycosyl hydrolases family 39
PF01915	Glycosyl hydrolase family 3 C-terminal domain
PF02056	Family 4 glycosyl hydrolase
PF02449	Beta-galactosidase
PF08533	Beta-galactosidase C-terminal domain
PF08532	Beta-galactosidase trimerisation domain
PF04616	Glycosyl hydrolases family 43
PF12891	Glycoside hydrolase family 44
PF02015	Glycosyl hydrolase family 45
PF01374	Glycosyl hydrolase family 46
PF01532	Glycosyl hydrolase family 47
PF02011	Glycosyl hydrolase family 48
PF03718	Glycosyl hydrolase family 49
PF11975	Family 4 glycosyl hydrolase C-terminal domain
PF03512	Glycosyl hydrolase family 52
PF07745	Glycosyl hydrolase family 53
PF01630	Hyaluronidase
PF03065	Glycosyl hydrolase family 57
PF02057	Glycosyl hydrolase family 59
PF01341	Glycosyl hydrolases family 6
PF03443	Glycosyl hydrolase family 61
PF03664	Glycosyl hydrolase family 62
PF03200	Mannosyl oligosaccharide glucosidase
PF03633	Glycosyl hydrolase family 65, C-terminal domain
PF03632	Glycosyl hydrolase family 65 central catalytic domain
PF03636	Glycosyl hydrolase family 65, N-terminal domain
PF13199	Glycosyl hydrolase family 66
PF07477	Glycosyl hydrolase family 67 C-terminus
PF07488	Glycosyl hydrolase family 67 middle domain
PF03648	Glycosyl hydrolase family 67 N-terminus
PF02435	Levansucrase/Invertase
PF00840	Glycosyl hydrolase family 7
PF02324	Glycosyl hydrolase family 70
PF03659	Glycosyl hydrolase family 71
PF03198	Glucanosyltransferase
PF07335	Fungal chitosanase of glycosyl hydrolase group 75
PF03663	Glycosyl hydrolase family 76
PF02446	4-alpha-glucanotransferase
PF03662	Glycosyl hydrolase family 79, N-terminal domain
PF01270	Glycosyl hydrolases family 8
PF13647	Glycosyl hydrolase family 80 of chitosanase A
PF03639	Glycosyl hydrolase family 81
PF03644	Glycosyl hydrolase family 85
PF07470	Glycosyl Hydrolase Family 88
PF00759	Glycosyl hydrolase family 9
PF07971	Glycosyl hydrolase family 92
PF10566	Glycoside hydrolase 97
PF08307	Glycosyl hydrolase family 98 C-terminal domain
PF08306	Glycosyl hydrolase family 98
PF11790	Glycosyl hydrolase catalytic core
PF14587	O-Glycosyl hydrolase family 30
PF14498	Glycosyl hydrolase family 65, N-terminal domain
PF10111	Glycosyltransferase like family 2
PF13641	Glycosyltransferase like family 2
PF13704	Glycosyl transferase family 2
PF13712	Glycosyltransferase like family
PF00852	Glycosyltransferase family 10 (fucosyltransferase)
PF01531	Glycosyl transferase family 11
PF01793	Glycolipid 2-alpha-mannosyltransferase
PF04724	Glycosyltransferase family 17
PF15024	Glycosyltransferase family 18
PF00982	Glycosyltransferase family 20
PF13506	Glycosyl transferase family 21
PF03901	Alg9-like mannosyltransferase family
PF01755	Glycosyltransferase family 25 (LPS biosynthesis protein)
PF03033	Glycosyltransferase family 28 N-terminal domain
PF00777	Glycosyltransferase family 29 (sialyltransferase)
PF05637	galactosyl transferase GMA12/MNN10 family
PF06165	Glycosyltransferase family 36
PF13439	Glycosyltransferase Family 4
PF13844	Glycosyl transferase family 41
PF03360	Glycosyltransferase family 43
PF13896	Glycosyl-transferase for dystroglycan
PF08323	Starch synthase catalytic domain
PF07922	Glycosyltransferase family 52
PF04666	N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region
PF07429	4-alpha-L-fucosyltransferase glycosyl transferase group 56
PF03414	Glycosyltransferase family 6
PF09258	Glycosyl transferase family 64 domain
PF02709	N-terminal domain of galactosyltransferase
PF13733	N-terminal region of glycosyl transferase group 7
PF01501	Glycosyl transferase family 8
PF08437	Glycosyl transferase family 8 C-terminal
PF01075	Glycosyltransferase family 9 (heptosyltransferase)
PF05686	Glycosyl transferase family 90
PF01697	Glycosyltransferase family 92
PF13524	Glycosyl transferases group 1
PF13528	Glycosyl transferase family 1
PF13692	Glycosyl transferases group 1
PF13632	Glycosyl transferase family group 2
PF13477	Glycosyl transferase 4-like
PF12000	Gkycosyl transferase family 4 group
PF13579	Glycosyl transferase 4-like domain
PF04101	Glycosyltransferase family 28 C-terminal domain
PF14307	Glycosyltransferase WbsX
PF03808	Glycosyl transferase WecB/TagA/CpsF family
PF12524	dsDNA virus glycoprotein L C terminal
PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
PF12681	Glyoxalase-like domain
PF13468	Glyoxalase-like domain
PF13669	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
PF14696	Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal
PF07250	Glyoxal oxidase N-terminus
PF04464	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
PF01153	Glypican
PF08444	Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region
PF06021	Aralkyl acyl-CoA:amino acid N-acyltransferase
PF02595	Glycerate kinase family
PF01228	Glycine radical
PF09338	Glycine/sarcosine/betaine reductase component B subunits
PF12810	Glycine rich protein
PF14272	Glycine-rich SFCGS
PF04488	Glycosyltransferase sugar-binding region containing DXD motif
PF10647	Lipoprotein LpqB beta-propeller domain
PF10648	Immunoglobulin-like domain of bacterial spore germination
PF06540	Galanin message associated peptide (GMAP)
PF05199	GMC oxidoreductase
PF00732	GMC oxidoreductase
PF05351	GMP-PDE, delta subunit
PF00958	GMP synthase C terminal domain
PF09535	Protein of unknown function (Gmx_para_CXXCG)
PF01109	Granulocyte-macrophage colony-stimulating factor
PF08701	GNL3L/Grn1 putative GTPase
PF12746	GNAT acetyltransferase
PF13718	GNAT acetyltransferase 2
PF12369	Gonadotropin hormone receptor transmembrane region
PF00446	Gonadotropin-releasing hormone
PF08178	GnsA/GnsB family
PF03071	GNT-I family
PF02447	GntP family permease
PF00392	Bacterial regulatory proteins, gntR family
PF13807	G-rich domain on putative tyrosine kinase
PF13897	Golgi-dynamics membrane-trafficking
PF15070	Putative golgin subfamily A member 2-like protein 5
PF09787	Golgin subfamily A member 5
PF02188	GoLoco motif
PF08685	GON domain
PF08738	Gon7 family
PF04178	Got1/Sft2-like family
PF05823	Nematode fatty acid retinoid binding protein (Gp-FAR-1)
PF08677	GP11 baseplate wedge protein
PF09089	Phage short tail fibre protein gp12, middle domain
PF00516	Envelope glycoprotein GP120
PF07068	Major capsid protein Gp23
PF03076	Equine arteritis virus GP3
PF08804	gp32 DNA binding protein like
PF09646	Gp37 protein
PF12604	Tail fiber protein gp37 C terminal
PF07505	Phage protein Gp37/Gp68
PF05268	Phage tail fibre adhesin Gp38
PF03010	GP4
PF11025	Glycoprotein GP40 of Cryptosporidium
PF00517	Retroviral envelope protein
PF09116	gp45 sliding clamp, C terminal
PF07409	Phage protein GP46
PF05973	Phage derived protein Gp49-like (DUF891)
PF07902	gp58-like protein
PF06715	Gp5 C-terminal repeat (3 copies)
PF06714	Gp5 N-terminal OB domain
PF14829	Glycerol-3-phosphate acyltransferase N-terminal
PF10192	Rhodopsin-like GPCR transmembrane domain
PF11904	GPCR-chaperone
PF02925	Bacteriophage scaffolding protein D
PF10110	Membrane domain of glycerophosphoryl diester phosphodiesterase
PF06560	Glucose-6-phosphate isomerase (GPI)
PF10342	Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
PF05024	N-acetylglucosaminyl transferase component (Gpi1)
PF04113	Gpi16 subunit, GPI transamidase component
PF06432	Phosphatidylinositol N-acetylglucosaminyltransferase
PF05719	Golgi phosphoprotein 3 (GPP34)
PF01825	Latrophilin/CL-1-like GPS domain
PF11359	Glycoprotein UL132
PF02831	gpW
PF04965	Gene 25-like lysozyme
PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
PF11668	HCMV glycoprotein pUL130
PF05084	Granule antigen protein (GRA6)
PF10375	GRIP-related Arf-binding domain
PF02893	GRAM domain
PF00746	Gram positive anchor
PF01271	Granin (chromogranin or secretogranin)
PF00396	Granulin
PF03514	GRAS domain family
PF04495	GRASP55/65 PDZ-like domain
PF04723	Glycine reductase complex selenoprotein A
PF07355	Glycine/sarcosine/betaine reductase selenoprotein B (GRDB)
PF01272	Transcription elongation factor, GreA/GreB, C-term
PF03449	Transcription elongation factor, N-terminal
PF06212	GRIM-19 protein
PF15235	G protein-regulated inducer of neurite outgrowth C-terminus
PF01465	GRIP domain
PF04155	Ground-like domain
PF07172	Glycine rich protein family
PF01184	GPR1/FUN34/yaaH family
PF04229	GrpB protein
PF01025	GrpE
PF07919	Gryzun, putative trafficking through Golgi
PF12742	Gryzun, putative Golgi trafficking
PF14959	gamma-Secretase-activating protein C-term
PF08885	GSCFA family
PF07995	Glucose / Sorbosone dehydrogenase
PF11055	Glucose signalling factor 2
PF07803	GSG1-like protein
PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
PF02951	Prokaryotic glutathione synthetase, N-terminal domain
PF08886	Glutamate-cysteine ligase
PF00255	Glutathione peroxidase
PF03199	Eukaryotic glutathione synthase
PF03917	Eukaryotic glutathione synthase, ATP binding domain
PF12437	Glutamine synthetase type III N terminal
PF05350	Glycogen synthase kinase-3 binding
PF12019	Type II transport protein GspH
PF12693	GspL periplasmic domain
PF03738	Glutathionylspermidine synthase preATP-grasp
PF00043	Glutathione S-transferase, C-terminal domain
PF13410	Glutathione S-transferase, C-terminal domain
PF14497	Glutathione S-transferase, C-terminal domain
PF14834	Glutathione S-transferase, C-terminal domain
PF02798	Glutathione S-transferase, N-terminal domain
PF13409	Glutathione S-transferase, N-terminal domain
PF13417	Glutathione S-transferase, N-terminal domain
PF09698	Geobacter CxxxxCH...CXXCH motif (GSu_C4xC__C2xCH)
PF06205	Glycosyltransferase 36 associated family
PF13547	GTA TIM-barrel-like domain
PF02946	GTF2I-like repeat
PF09729	Gti1/Pac2 family
PF13167	GTP-binding GTPase N-terminal
PF01018	GTP1/OBG
PF09027	GTPase binding
PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
PF12471	GTP cyclohydrolase N terminal
PF00925	GTP cyclohydrolase II
PF01227	GTP cyclohydrolase I
PF00009	Elongation factor Tu GTP binding domain
PF03144	Elongation factor Tu domain 2
PF03143	Elongation factor Tu C-terminal domain
PF14578	Elongation factor Tu domain 4
PF04670	Gtr1/RagA G protein conserved region
PF04138	GtrA-like protein
PF15259	G-2 and S-phase expressed 1
PF00211	Adenylate and Guanylate cyclase catalytic domain
PF09778	Guanylylate cyclase
PF00625	Guanylate kinase
PF02058	Guanylin precursor
PF13947	Wall-associated receptor kinase galacturonan-binding
PF08152	GUCT (NUC152) domain
PF05419	GUN4-like
PF06923	Glucitol operon activator protein (GutM)
PF07088	GvpD gas vesicle protein
PF05120	Gas vesicle protein G
PF05455	GvpH
PF05121	Gas vesicle protein K
PF06386	Gas vesicle synthesis protein GvpL/GvpF
PF05800	Gas vesicle synthesis protein GvpO
PF13900	Putative binding domain
PF06423	GWT1
PF14607	N-terminus of Esterase_SGNH_hydro-type
PF01493	GXGXG motif
PF14323	GxGYxY sequence motif in domain of unknown function
PF14231	GXWXG protein
PF08734	GYD domain
PF02213	GYF domain
PF07253	Gypsy protein
PF02756	GYR motif
PF06445	GyrI-like small molecule binding domain
PF04162	Gyrovirus capsid protein (VP1)
PF01019	Gamma-glutamyltranspeptidase
PF02895	Signal transducing histidine kinase, homodimeric domain
PF09040	Gastric H+/K+-ATPase, N terminal domain
PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
PF03457	Helicase associated domain
PF04408	Helicase associated domain (HA2)
PF04774	Hyaluronan / mRNA binding family
PF12710	haloacid dehalogenase-like hydrolase
PF13419	Haloacid dehalogenase-like hydrolase
PF09065	Haemadin
PF05860	haemagglutination activity domain
PF14830	Haemocyanin beta-sandwich
PF01809	Haemolytic domain
PF14376	Haem-binding domain
PF14518	Iron-containing redox enzyme
PF04877	HrpZ
PF07527	Hairy Orange
PF10112	5-bromo-4-chloroindolyl phosphate hydrolysis protein
PF05465	Halobacterial gas vesicle protein C (GVPC) repeat
PF08663	HalX domain
PF02183	Homeobox associated leucine zipper
PF01725	Ham1 family
PF04388	Hamartin protein
PF00672	HAMP domain
PF09110	HAND
PF01567	Hantavirus glycoprotein G1
PF01561	Hantavirus glycoprotein G2
PF00846	Hantavirus nucleocapsid protein
PF03866	Hydrophobic abundant protein (HAP)
PF04849	HAP1 N-terminal conserved region
PF10699	Male gamete fusion factor
PF10297	Minimal binding motif of Hap4 for binding to Hap2/3/5
PF11639	REDY-like protein HapK
PF15196	Activator of apoptosis harakiri
PF05066	HB1, ASXL, restriction endonuclease HTH domain
PF07443	HepA-related protein (HARP)
PF09378	HAS barrel domain
PF06438	Heme-binding protein A (HasA)
PF02184	HAT (Half-A-TPR) repeat
PF10394	Histone acetyl transferase HAT1 N-terminus
PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
PF13581	Histidine kinase-like ATPase domain
PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
PF13749	ATP-dependent DNA helicase recG C-terminal
PF14501	GHKL domain
PF14932	HAUS augmin-like complex subunit 3
PF15003	HAUS augmin-like complex subunit 2
PF14735	HAUS augmin-like complex subunit 4
PF14817	HAUS augmin-like complex subunit 5
PF14661	HAUS augmin-like complex subunit 6 N-terminus
PF08539	HbrB-like
PF08938	HBS1 N-terminus
PF07432	Histone H1-like protein Hc1
PF07382	Histone H1-like nucleoprotein HC2
PF07258	HCaRG protein
PF06594	Haemolysin-type calcium binding protein related domain
PF14856	Pathogen effector; putative necrosis-inducing factor
PF12154	Glycoprotein B N-terminal antigenic domain of HCMV
PF12507	Human Cytomegalovirus UL139 protein
PF07818	HCNGP-like protein
PF00955	HCO3- transporter family
PF07111	Alpha helical coiled-coil rod protein (HCR)
PF01543	Hepatitis C virus capsid protein
PF01542	Hepatitis C virus core protein
PF01539	Hepatitis C virus envelope glycoprotein E1
PF01560	Hepatitis C virus non-structural protein E2/NS1
PF01538	Hepatitis C virus non-structural protein NS2
PF01006	Hepatitis C virus non-structural protein NS4a
PF01001	Hepatitis C virus non-structural protein NS4b
PF01506	Hepatitis C virus non-structural 5a protein membrane anchor
PF08300	Hepatitis C virus non-structural 5a zinc finger domain
PF08301	Hepatitis C virus non-structural 5a domain 1b
PF12941	HCV NS5a protein C-terminal region
PF01966	HD domain
PF04618	HD-ZIP protein N terminus
PF11496	Class II histone deacetylase complex subunits 2 and 3
PF12203	Glutamine rich N terminal domain of histone deacetylase 4
PF02329	Histidine carboxylase PI chain
PF06411	HdeA/HdeB family
PF14701	glucanotransferase domain of human glycogen debranching enzyme
PF15115	Domain of unknown function with conserved HDNR motif
PF08668	HDOD domain
PF02924	Bacteriophage lambda head decoration protein D
PF01517	Hepatitis delta virus delta antigen
PF12917	HD containing hydrolase-like enzyme
PF13023	HD domain
PF13328	HD domain
PF13487	HD domain
PF13286	Phosphohydrolase-associated domain
PF12236	Bacteriophage head to tail connecting protein
PF09008	Head binding
PF02985	HEAT repeat
PF13646	HEAT repeats
PF13513	HEAT-like repeat
PF03130	PBS lyase HEAT-like repeat
PF15353	Headcase protein family homologue
PF00632	HECT-domain (ubiquitin-transferase)
PF09814	HECT-like Ubiquitin-conjugating enzyme (E2)-binding
PF12661	Human growth factor-like EGF
PF12949	HeH/LEM domain
PF00271	Helicase conserved C-terminal domain
PF13307	Helicase C-terminal domain
PF13625	Helicase conserved C-terminal domain
PF13871	Helicase_C-like
PF12462	DNA helicase IV / RNA helicase N terminal
PF05127	Helicase
PF11408	Sgs1 RecQ helicase
PF14214	Helitron helicase-like domain at N-terminus
PF14479	Prion-inhibition and propagation
PF03451	HELP motif
PF02602	Uroporphyrinogen-III synthase HemD
PF00509	Haemagglutinin
PF03996	Hemagglutinin esterase
PF02710	Hemagglutinin domain of haemagglutinin-esterase-fusion glycoprotein
PF08720	Influenza C hemagglutinin stalk
PF11545	Cell surface heme-binding protein Shp
PF01814	Hemerythrin HHE cation binding domain
PF01126	Heme oxygenase
PF06969	HemN C-terminal domain
PF03723	Hemocyanin, ig-like domain
PF00372	Hemocyanin, copper containing domain
PF03722	Hemocyanin, all-alpha domain
PF00353	Hemolysin-type calcium-binding repeat (2 copies)
PF12563	Hemolytic toxin N terminal
PF00045	Hemopexin
PF10636	Hemin uptake protein hemP
PF05171	Haemin-degrading HemS.ChuX domain
PF04375	HemX
PF07219	HemY protein N-terminus
PF12623	RNA repair, ligase-Pnkp-associating, region of Hen1
PF07940	Heparinase II/III-like protein
PF00906	Hepatitis core antigen
PF06446	Hepcidin
PF05168	HEPN domain
PF07307	Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1
PF09272	Hepsin, SRCR
PF07052	Hepatocellular carcinoma-associated antigen 59
PF08290	Hepatitis core protein, putative zinc finger
PF09241	Herpesviridae viral cyclin
PF01771	Herpesvirus alkaline exonuclease
PF04793	BRRF1-like protein
PF05109	Herpes virus major outer envelope glycoprotein (BLLF1)
PF05812	Herpesvirus BLRF2 protein
PF04633	Herpesvirus BMRF2 protein
PF04682	Herpesvirus BTRF1 protein conserved region
PF06112	Gammaherpesvirus capsid protein
PF04929	Herpes DNA replication accessory factor
PF01673	Herpesvirus putative major envelope glycoprotein
PF02480	Alphaherpesvirus glycoprotein E
PF01688	Alphaherpesvirus glycoprotein I
PF01528	Herpesvirus glycoprotein M
PF01537	Herpesvirus glycoprotein D/GG/GX domain
PF02489	Herpesvirus glycoprotein H
PF05955	Equine herpesvirus glycoprotein gp2
PF02689	Helicase
PF05774	Herpesvirus helicase-primase complex component
PF03324	Herpesvirus DNA helicase/primase complex associated protein
PF03585	Herpesvirus ICP4-like protein C-terminal region
PF03584	Herpesvirus ICP4-like protein N-terminal region
PF07340	Cytomegalovirus IE1 protein
PF03361	Herpes virus intermediate/early protein 2/3
PF02479	Herpesvirus immediate early protein
PF06307	Herpesvirus IR6 protein
PF06126	Herpesvirus Latent membrane protein 2
PF05297	Herpesvirus latent membrane protein 1 (LMP1)
PF07415	Gammaherpesvirus latent membrane protein (LMP2) protein
PF03363	Herpesvirus leader protein
PF03122	Herpes virus major capsid protein
PF04797	Herpesvirus dUTPase protein
PF02399	Origin of replication binding protein
PF03325	Herpesvirus polymerase accessory protein
PF04846	Herpesvirus pp38 phosphoprotein
PF04637	Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25)
PF03326	Herpesvirus transcription activation factor (transactivator)
PF04843	Herpesvirus tegument protein, N-terminal conserved region
PF00693	Thymidine kinase from herpesvirus
PF08465	Thymidine kinase from Herpesvirus C-terminal
PF05613	Human herpesvirus U15 protein
PF07402	Human herpesvirus U26 protein
PF04523	Herpes virus tegument protein U30
PF04541	Herpesvirus virion protein U34
PF04533	Herpes virus U44 protein
PF05467	Herpesvirus glycoprotein U47
PF05999	Herpesvirus U5-like family
PF06501	Human herpesvirus U55 protein
PF04529	Herpesvirus U59 protein
PF05259	Herpesvirus glycoprotein L
PF03580	Herpesvirus UL14-like protein
PF03044	Herpesvirus UL16/UL94 family
PF04559	Herpesvirus UL17 protein
PF04544	Herpesvirus egress protein UL20
PF03252	Herpesvirus UL21
PF01646	Herpes virus protein UL24
PF01499	Herpesvirus UL25 family
PF03369	Herpesvirus UL3 protein
PF02718	Herpesvirus UL31-like protein
PF06070	Herpesvirus large structural phosphoprotein UL32
PF03581	Herpesvirus UL33-like protein
PF04496	Herpesvirus UL35 family
PF03586	Herpesvirus UL36 tegument protein
PF03970	Herpesvirus UL37 tegument protein
PF07413	Betaherpesvirus immediate-early glycoprotein UL37
PF03277	Herpesvirus UL4 family
PF02282	DNA polymerase processivity factor (UL42)
PF05072	Herpesvirus UL43 protein
PF05473	UL45 protein
PF03387	Herpesvirus UL46 protein
PF03362	Herpesvirus UL47 protein
PF03117	UL49 family
PF04823	Herpesvirus UL49 tegument protein
PF05702	Herpesvirus UL49.5 envelope/tegument protein
PF04540	Herpesvirus UL51 protein
PF03121	Herpesviridae UL52/UL70 DNA primase
PF04537	Herpesvirus UL55 protein
PF04534	Herpesvirus UL56 protein
PF01763	Herpesvirus UL6 like
PF05459	Herpesvirus transcriptional regulator family
PF01677	Herpesvirus UL7 like
PF03554	UL73 viral envelope glycoprotein
PF07982	Herpes UL74 glycoproteins
PF03049	UL79 family
PF05784	Betaherpesvirus UL82/83 protein N terminus
PF03043	Herpesvirus UL87 family
PF03048	UL92 family
PF03038	UL95 family
PF05363	Herpesvirus US12 family
PF06072	Alphaherpesvirus tegument protein US9
PF01802	Herpesvirus VP23 like capsid protein
PF03327	Herpesvirus capsid shell protein VP19C
PF14409	Ribosomally synthesized peptide in Herpetosiphon
PF13804	Retro-transcribing viruses envelope glycoprotein
PF06985	Heterokaryon incompatibility protein (HET)
PF07217	Heterokaryon incompatibility protein Het-C
PF11558	Het-s 218-289
PF02444	Hepatitis E virus ORF-2 (Putative capsid protein)
PF00132	Bacterial transferase hexapeptide (six repeats)
PF14602	Hexapeptide repeat of succinyl-transferase
PF15313	Hexamethylene bis-acetamide-inducible protein
PF00349	Hexokinase
PF03727	Hexokinase
PF03559	NDP-hexose 2,3-dehydratase
PF02455	Hexon-associated protein (IIIa)
PF05345	Putative Ig domain
PF10632	He_PIG associated, NEW1 domain of bacterial glycohydrolase
PF12221	Bacterial membrane protein N terminal
PF06050	2-hydroxyglutaryl-CoA dehydratase, D-component
PF14702	central domain of human glycogen debranching enzyme
PF14699	N-terminal domain from the human glycogen debranching enzyme
PF04209	homogentisate 1,2-dioxygenase
PF03129	Anticodon binding domain
PF12745	Anticodon binding domain of tRNAs
PF03578	HGWP repeat
PF05321	Haemolysin expression modulating protein
PF00633	Helix-hairpin-helix motif
PF00730	HhH-GPD superfamily base excision DNA repair protein
PF12826	Helix-hairpin-helix motif
PF12836	Helix-hairpin-helix motif
PF14490	Helix-hairpin-helix containing domain
PF14520	Helix-hairpin-helix domain
PF14579	Helix-hairpin-helix motif
PF14635	Helix-hairpin-helix motif
PF14716	Helix-hairpin-helix domain
PF03753	Human herpesvirus 6 immediate early protein
PF01085	Hedgehog amino-terminal signalling domain
PF03486	HI0933-like protein
PF15403	HiaBD2_N domain of Trimeric autotransporter adhesin (GIN)
PF05534	HicB family
PF12722	High-temperature-induced dauer-formation protein
PF11413	Hypoxia-inducible factor-1
PF08778	HIF-1 alpha C terminal transactivation domain
PF05636	HIGH Nucleotidyl Transferase
PF04588	Hypoxia induced protein conserved region
PF15220	Hypoxia-inducible lipid droplet-associated
PF08732	HIM1
PF02760	HIN-200/IF120x domain
PF01079	Hint module
PF13403	Hint domain
PF07804	HipA-like C-terminal domain
PF07805	HipA-like N-terminal domain
PF01355	High potential iron-sulfur protein
PF07569	TUP1-like enhancer of split
PF08797	HIRAN domain
PF09453	HIRA B motif
PF00713	Hirudin
PF01634	ATP phosphoribosyltransferase
PF08029	HisG, C-terminal domain
PF00512	His Kinase A (phospho-acceptor) domain
PF07568	Histidine kinase
PF07730	Histidine kinase
PF09385	Histidine kinase N terminal
PF00815	Histidinol dehydrogenase
PF00125	Core histone H2A/H2B/H3/H4
PF00816	H-NS histone family
PF00850	Histone deacetylase domain
PF10529	Histidine-rich Calcium-binding repeat region
PF02098	Tick histamine binding protein
PF00977	Histidine biosynthesis protein
PF06580	Histidine kinase
PF08047	Histidine operon leader peptide
PF00300	Histidine phosphatase superfamily (branch 1)
PF00328	Histidine phosphatase superfamily (branch 2)
PF01230	HIT domain
PF01870	Archaeal holliday junction resolvase (hjc)
PF12347	Holliday junction regulator protein family C-terminal repeat
PF12346	Holliday junction recognition protein-associated repeat
PF02110	Hydroxyethylthiazole kinase family
PF04883	Bacteriophage HK97-gp10, putative tail-component
PF00010	Helix-loop-helix DNA-binding domain
PF02794	RTX toxin acyltransferase family
PF00529	HlyD family secretion protein
PF12700	HlyD family secretion protein
PF13437	HlyD family secretion protein
PF06109	Haemolysin E (HlyE)
PF03006	Haemolysin-III related
PF10115	Transcriptional activator HlyU
PF00403	Heavy-metal-associated domain
PF03201	H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase
PF00368	Hydroxymethylglutaryl-coenzyme A reductase
PF01101	HMG14 and HMG17
PF00682	HMGL-like
PF00505	HMG (high mobility group) box
PF09011	HMG-box domain
PF14887	HMG (high mobility group) box 5
PF08540	Hydroxymethylglutaryl-coenzyme A synthase C terminal
PF01154	Hydroxymethylglutaryl-coenzyme A synthase N terminal
PF14064	HmuY protein
PF00423	Haemagglutinin-neuraminidase
PF04813	Hepatocyte nuclear factor 1 (HNF-1), alpha isoform C terminus
PF04812	Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus
PF04814	Hepatocyte nuclear factor 1 (HNF-1), N terminus
PF09354	HNF3 C-terminal domain
PF01844	HNH endonuclease
PF13391	HNH endonuclease
PF13392	HNH endonuclease
PF13395	HNH endonuclease
PF14279	HNH endonuclease
PF12196	FHA Ki67 binding domain of hNIFK
PF07700	Heme NO binding
PF07701	Heme NO binding associated
PF11627	Nuclear factor hnRNPA1
PF11532	Heterogeneous nuclear ribonucleoprotein M
PF14515	Haem-oxygenase-associated N-terminal helices
PF12163	DNA replication regulator
PF01848	Hok/gef family
PF05102	holin, BlyA family
PF09682	Phage holin protein (Holin_LLH)
PF00046	Homeobox domain
PF05920	Homeobox KN domain
PF11569	Homeodomain leucine-zipper encoding, Homez
PF00742	Homoserine dehydrogenase
PF05204	Homing endonuclease
PF05203	Hom_end-associated Hint
PF05622	HOOK protein
PF08888	HopJ type III effector protein
PF15457	Type III T3SS secreted effector HopW1-1/HopPmaA
PF02301	HORMA domain
PF00103	Somatotropin hormone family
PF00123	Peptide hormone
PF00159	Pancreatic hormone peptide
PF00220	Neurohypophysial hormones, N-terminal Domain
PF00184	Neurohypophysial hormones, C-terminal Domain
PF00236	Glycoprotein hormone
PF00104	Ligand-binding domain of nuclear hormone receptor
PF10116	Protein required for attachment to host cells
PF04617	Hox9 activation region
PF12284	Hox protein A13 N terminal
PF03241	4-hydroxyphenylacetate 3-hydroxylase C terminal
PF11794	4-hydroxyphenylacetate 3-hydroxylase N terminal
PF09483	Type III secretion protein (HpaP)
PF03328	HpcH/HpaI aldolase/citrate lyase family
PF05044	Homeo-prospero domain
PF13694	Sec63/Sec62 complex-interacting family
PF14925	Domain of unknown function
PF13323	N-terminal domain with HPIH motif
PF15226	HCF-1 beta-propeller-interacting protein family
PF04982	HPP family
PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
PF07456	Heptaprenyl diphosphate synthase component I
PF07475	HPr Serine kinase C-terminal domain
PF02603	HPr Serine kinase N terminus
PF14763	Hermansky-Pudlak syndrome 3, C-terminal
PF14762	Hermansky-Pudlak syndrome 3, middle region
PF14761	Hermansky-Pudlak syndrome 3
PF01627	Hpt domain
PF01856	Helicobacter outer membrane protein
PF02521	Putative outer membrane protein
PF02185	Hr1 repeat
PF01628	HrcA protein C terminal domain
PF03444	Winged helix-turn-helix transcription repressor, HrcA DNA-binding
PF00570	HRDC domain
PF02793	Hormone receptor domain
PF09589	HrpA pilus formation protein
PF09613	Bacterial type III secretion protein (HrpB1_HrpK)
PF09487	Bacterial type III secretion protein (HrpB2)
PF09502	Bacterial type III secretion protein (HrpB4)
PF09486	Bacterial type III secretion protein (HrpB7)
PF08482	ATP-dependent helicase C-terminal
PF06188	HrpE/YscL/FliH and V-type ATPase subunit E
PF06266	HrpF protein
PF07201	HrpJ-like domain
PF12210	Hepatocyte growth factor-regulated tyrosine kinase substrate
PF13933	Putative peptidase family
PF05514	HR-like lesion-inducing
PF07014	Hs1pro-1 protein C-terminus
PF07231	Hs1pro-1 N-terminus
PF02218	Repeat in HS1/Cortactin
PF07529	HSA
PF12456	Inositol phosphatase
PF12296	Hydrophobic surface binding protein A
PF06825	Heat shock factor binding protein 1
PF07743	HSCB C-terminal oligomerisation domain
PF15244	Hydroxy-steroid dehydrogenase
PF12161	HsdM N-terminal domain
PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
PF13588	Type I restriction enzyme R protein N terminus (HSDR_N)
PF00447	HSF-type DNA-binding
PF14603	Helically-extended SH3 domain
PF06350	Hormone-sensitive lipase (HSL) N-terminus
PF12062	heparan sulfate-N-deacetylase
PF00011	Hsp20/alpha crystallin family
PF01430	Hsp33 protein
PF00012	Hsp70 protein
PF00183	Hsp90 protein
PF04119	Heat shock protein 9/12
PF12149	Herpes simplex virus virion protein 16 C terminal
PF04213	Htaa
PF11534	Hexameric tyrosine-coordinated heme protein (HTHP)
PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
PF04967	HTH DNA binding domain
PF08279	HTH domain
PF08461	Ribonuclease R winged-helix domain
PF11972	HTH DNA binding domain
PF12324	Helix-turn-helix domain of alkylmercury lyase
PF12645	Helix-turn-helix domain
PF12728	Helix-turn-helix domain
PF12833	Helix-turn-helix domain
PF12844	Helix-turn-helix domain
PF12840	Helix-turn-helix domain
PF13276	HTH-like domain
PF13309	HTH domain
PF13384	Homeodomain-like domain
PF13412	Winged helix-turn-helix DNA-binding
PF13413	Helix-turn-helix domain
PF13443	Cro/C1-type HTH DNA-binding domain
PF13463	Winged helix DNA-binding domain
PF13518	Helix-turn-helix domain
PF13551	Winged helix-turn helix
PF01381	Helix-turn-helix
PF13556	PucR C-terminal helix-turn-helix domain
PF13560	Helix-turn-helix domain
PF13565	Homeodomain-like domain
PF13592	Winged helix-turn helix
PF13601	Winged helix DNA-binding domain
PF13693	Winged helix-turn-helix DNA-binding
PF13730	Helix-turn-helix domain
PF13744	Helix-turn-helix domain
PF13936	Helix-turn-helix domain
PF14090	Helix-turn-helix domain
PF14493	Helix-turn-helix domain
PF14502	Helix-turn-helix domain
PF06224	Winged helix DNA-binding domain
PF09904	Winged helix-turn helix
PF14641	Helix-turn-helix DNA-binding domain of SPT6
PF14947	Winged helix-turn-helix
PF01022	Bacterial regulatory protein, arsR family
PF01418	Helix-turn-helix domain, rpiR family
PF02796	Helix-turn-helix domain of resolvase
PF02954	Bacterial regulatory protein, Fis family
PF08221	RNA polymerase III subunit RPC82 helix-turn-helix domain
PF00165	Bacterial regulatory helix-turn-helix proteins, AraC family
PF13404	AsnC-type helix-turn-helix domain
PF08222	CodY helix-turn-helix domain
PF13545	Crp-like helix-turn-helix domain
PF08220	DeoR-like helix-turn-helix domain
PF09339	IclR helix-turn-helix domain
PF08280	M protein trans-acting positive regulator (MGA) HTH domain
PF12323	Helix-turn-helix domain
PF05225	helix-turn-helix, Psq domain
PF01527	Transposase
PF13022	Helix-turn-helix of insertion element transposase
PF13613	Helix-turn-helix of DDE superfamily endonuclease
PF12759	InsA C-terminal domain
PF01710	Transposase
PF13542	Helix-turn-helix domain of transposase family ISL3
PF02316	Mu DNA-binding domain
PF09039	Mu DNA binding, I gamma subdomain
PF11427	Tc3 transposase
PF01498	Transposase
PF03221	Tc5 transposase DNA-binding domain
PF02650	WhiA C-terminal HTH domain
PF09612	Bacterial protein of unknown function (HtrL_YibB)
PF04204	Homoserine O-succinyltransferase
PF14848	DNA-binding domain
PF15040	Humanin family
PF05393	Human adenovirus early E3A glycoprotein
PF08729	HPC2 and ubinuclein domain
PF04955	HupE / UreJ protein
PF13795	HupE / UreJ protein
PF01455	HupF/HypC family
PF04809	HupH hydrogenase expression protein, C-terminal conserved region
PF04005	Hus1-like protein
PF05962	HutD
PF09021	HutP
PF09749	Uncharacterised conserved protein
PF07536	HWE histidine kinase
PF01638	HxlR-like helix-turn-helix
PF13787	Protein of unknown function with HXXEE motif
PF13745	HxxPF-repeated domain
PF07586	Protein of unknown function (DUF1552)
PF07449	Hydrogenase-1 expression protein HyaE
PF07212	Hyaluronidase protein (HylP)
PF11046	Transcriptional repressor of hyc and hyp operons
PF09790	Hyccin
PF07450	Formate hydrogenlyase maturation protein HycH
PF01750	Hydrogenase maturation protease
PF01968	Hydantoinase/oxoprolinase
PF02538	Hydantoinase B/oxoprolinase
PF05378	Hydantoinase/oxoprolinase N-terminal region
PF00702	haloacid dehalogenase-like hydrolase
PF07486	Cell Wall Hydrolase
PF08282	haloacid dehalogenase-like hydrolase
PF12146	Putative lysophospholipase
PF13344	Haloacid dehalogenase-like hydrolase
PF13242	HAD-hyrolase-like
PF13246	Putative hydrolase of sodium-potassium ATPase alpha subunit
PF01185	Fungal hydrophobin
PF06766	Fungal hydrophobin
PF14547	Hydrophobic seed protein
PF06462	Propeller
PF15311	Hydrolethalus syndrome protein 1 C-terminus
PF01155	Hydrogenase expression/synthesis hypA family
PF01924	Hydrogenase formation hypA family
PF11765	Hyphally regulated cell wall protein N-terminal
PF09509	Protein of unknown function (Hypoth_ymh)
PF02494	HYR domain
PF12282	Signal transduction histidine kinase
PF09458	H-type lectin domain
PF03030	Inorganic H+ pyrophosphatase
PF07679	Immunoglobulin I-set domain
PF06776	Invasion associated locus B (IalB) protein
PF04568	Mitochondrial ATPase inhibitor, IATP
PF01749	Importin beta binding domain
PF10416	Transcription-initiator DNA-binding domain IBD
PF03810	Importin-beta N-terminal domain
PF11422	Initiator binding protein 39 kDa
PF01485	IBR domain
PF13956	Toxin Ibs, type I toxin-antitoxin system
PF03617	IBV 3A protein
PF03622	IBV 3B protein
PF03620	IBV 3C protein
PF04629	Islet cell autoantigen ICA69, C-terminal domain
PF03921	Intercellular adhesion molecule (ICAM), N-terminal domain
PF10480	Beta-1 integrin binding protein
PF06384	Beta-catenin-interacting protein ICAT
PF08426	ICE2
PF05315	ICEA Protein
PF05862	Helicobacter pylori IceA2 protein
PF00818	Ice nucleation protein repeat
PF00463	Isocitrate lyase family
PF01614	Bacterial transcriptional regulator
PF06761	Intracellular multiplication and human macrophage-killing
PF11393	Macrophage killing protein with similarity to conjugation protein
PF04140	Isoprenylcysteine carboxyl methyltransferase (ICMT) family
PF08858	IDEAL domain
PF03971	Monomeric isocitrate dehydrogenase
PF01231	Indoleamine 2,3-dioxygenase
PF05760	Immediate early response protein (IER)
PF11987	Translation-initiation factor 2
PF01008	Initiation factor 2 subunit family
PF08364	Bacterial translation initiation factor IF-2 associated region
PF04760	Translation initiation factor IF-2, N-terminal region
PF00707	Translation initiation factor IF-3, C-terminal domain
PF05198	Translation initiation factor IF-3, N-terminal domain
PF01652	Eukaryotic initiation factor 4E
PF06140	Interferon-induced 6-16 family
PF00714	Interferon gamma
PF07140	Interferon gamma receptor (IFNGR1)
PF07334	Interferon-induced 35 kDa protein (IFP 35) N-terminus
PF14754	Papain-like auto-proteinase
PF05004	Interferon-related developmental regulator (IFRD)
PF04836	Interferon-related protein conserved region
PF14931	Intraflagellar transport complex B, subunit 20
PF15305	Intraflagellar transport protein 43
PF12317	Intraflagellar transport complex B protein 46 C terminal
PF10498	Intra-flagellar transport protein 57
PF00047	Immunoglobulin domain
PF07095	Intracellular growth attenuator protein IgaA
PF08365	Insulin-like growth factor II E-peptide
PF00219	Insulin-like growth factor binding protein
PF14653	Insulin growth factor-like family
PF01378	B domain
PF11550	Intracellular growth locus C protein
PF00475	Imidazoleglycerol-phosphate dehydratase
PF00218	Indole-3-glycerol phosphate synthase
PF09597	IGR protein motif
PF13895	Immunoglobulin domain
PF13927	Immunoglobulin domain
PF15097	Immunoglobulin J chain
PF10430	Tie-2 Ig-like domain 1
PF05049	Interferon-inducible GTPase (IIGP)
PF04762	IKI3 family
PF12179	I-kappa-kinase-beta NEMO binding domain
PF00340	Interleukin-1 / 18
PF00726	Interleukin 10
PF07400	Interleukin 11
PF03039	Interleukin-12 alpha subunit
PF10420	Cytokine interleukin-12p40 C-terminus
PF03487	Interleukin-13
PF02372	Interleukin 15
PF06083	Interleukin-17
PF15037	Interleukin-17 receptor extracellular region
PF02394	Interleukin-1 propeptide
PF00715	Interleukin 2
PF14565	Interleukin 22 IL-10-related T-cell-derived-inducible factor
PF15177	Interleukin-28A
PF02059	Interleukin-3
PF15209	Interleukin 31
PF15225	Interleukin 32
PF15095	Interleukin 33
PF15036	Interleukin 34
PF00727	Interleukin 4
PF09238	Interleukin-4 receptor alpha chain, N-terminal
PF02025	Interleukin 5
PF00489	Interleukin-6/G-CSF/MGF family
PF09240	Interleukin-6 receptor alpha chain, binding
PF01415	Interleukin 7/9 family
PF00048	Small cytokines (intecrine/chemokine), interleukin-8 like
PF01787	Ilarvirus coat protein
PF10311	Increased loss of mitochondrial DNA protein 1
PF08049	IlvB leader peptide
PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
PF00920	Dehydratase family
PF08046	IlvGEDA operon leader peptide
PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
PF09779	Ima1 N-terminal domain
PF14331	ImcF-related N-terminal domain
PF12314	Inner membrane complex protein
PF08397	IRSp53/MIM homology domain
PF05046	Mitochondrial large subunit ribosomal protein (Img2)
PF15655	NTF2 fold immunity protein
PF15631	NTF2 fold immunity protein
PF14430	Immunity protein Imm1
PF15562	Immunity protein 10
PF15563	Immunity protein 11
PF15589	Immunity protein 12
PF15564	Immunity protein 13
PF15428	Immunity protein 14
PF15590	Immunity protein 15
PF15565	Immunity protein 16
PF15591	Immunity protein 17
PF15566	Immunity protein 18
PF15567	Immunity protein 19
PF14426	Immunity protein Imm2
PF15568	Immunity protein 20
PF15569	Immunity protein 21
PF15592	Immunity protein 22
PF15593	Immunity protein 23
PF15570	Immunity protein 24
PF15571	Immunity protein 25
PF15572	Immunity protein 26
PF15573	Immunity protein 27
PF15574	Immunity protein 28
PF15575	Immunity protein 29
PF14425	Immunity protein Imm3
PF15594	Immunity protein 30
PF15595	Immunity protein 31
PF15579	Immunity protein 32
PF15580	Immunity protein 33
PF15596	Immunity protein 34
PF15581	Immunity protein 35
PF15597	Immunity protein 36
PF15598	Immunity protein 37
PF15599	Immunity protein 38
PF15600	Immunity protein 39
PF15582	Immunity protein 40
PF15583	Immunity protein 41
PF15601	Immunity protein 42
PF15602	Immunity protein 43
PF15584	Immunity protein 44
PF15603	Immunity protein 45
PF15585	Immunity protein 46
PF15586	Immunity protein 47
PF15587	Immunity protein 48
PF15660	Immunity protein 49
PF14423	Immunity protein Imm5
PF14434	Immunity protein Imm6
PF15588	Immunity protein 7
PF15560	Immunity protein 8
PF15561	Immunity protein 9
PF11480	Colicin-E5 Imm protein
PF14373	Superinfection immunity protein
PF10688	Bacterial inner membrane protein
PF06812	ImpA-related N-terminal
PF00478	IMP dehydrogenase / GMP reductase domain
PF07024	ImpE protein
PF07826	IMP cyclohydrolase-like protein
PF00817	impB/mucB/samB family
PF11799	impB/mucB/samB family C-terminal domain
PF11798	IMS family HHH motif
PF15018	TRP-interacting helix
PF04156	IncA protein
PF15142	INCA1
PF03941	Inner centromere protein, ARK binding region
PF12178	Chromosome passenger complex (CPC) protein INCENP N terminal
PF02387	IncFII RepA protein family
PF04227	Indigoidine synthase A like protein
PF12998	Inhibitor of growth proteins N-terminal histone-binding
PF02974	Protease inhibitor Inh
PF11417	Loader and inhibitor of phage G40P
PF12559	Serine endopeptidase inhibitors
PF10465	PinA peptidase inhibitor
PF08246	Cathepsin propeptide inhibitor domain (I29)
PF10466	Saccharopepsin inhibitor I34
PF03995	Peptidase inhibitor family I36
PF09394	Chagasin family peptidase inhibitor I42
PF10467	Peptidase inhibitor clitocypin
PF11714	Thrombin inhibitor Madanin
PF11405	Bromelain inhibitor VI
PF10468	Carboxypeptidase inhibitor I68
PF13734	Spi protease inhibitor
PF12628	Falstatin, cysteine peptidase inhibitor
PF11720	Peptidase inhibitor I78 family
PF05922	Peptidase inhibitor I9
PF11555	EGFR receptor inhibitor Mig-6
PF04179	Initiator tRNA phosphoribosyl transferase
PF12782	Invertebrate innate immunity transcript family
PF00876	Innexin
PF14612	IEC3 subunit of the Ino80 complex, chromatin re-modelling
PF08193	INO80 complex subunit Ies4
PF01658	Myo-inositol-1-phosphate synthase
PF00459	Inositol monophosphatase family
PF12634	Inheritance of peroxisomes protein 1
PF05770	Inositol 1, 3, 4-trisphosphate 5/6-kinase
PF08709	Inositol 1,4,5-trisphosphate/ryanodine receptor
PF07281	Insulin-induced protein (INSIG)
PF00049	Insulin/IGF/Relaxin family
PF06757	Insect allergen related repeat, nitrile-specifier detoxification
PF03488	Nematode insulin-related peptide beta type
PF06090	Inositol-pentakisphosphate 2-kinase
PF12835	Integrase
PF14657	AP2-like DNA-binding integrase domain
PF02920	DNA binding domain of tn916 integrase
PF02022	Integrase Zinc binding domain
PF00357	Integrin alpha cytoplasmic region
PF08441	Integrin alpha
PF00362	Integrin, beta chain
PF08725	Integrin beta cytoplasmic domain
PF07965	Integrin beta tail domain
PF14890	Intein splicing domain
PF09294	Interferon-alpha/beta receptor, fibronectin type III
PF00143	Interferon alpha/beta domain
PF12354	Bacterial adhesion/invasion protein N terminal
PF09529	Integral membrane protein (intg_mem_TP0381)
PF07979	Intimin C-type lectin domain
PF01348	Type II intron maturase
PF14750	Integrator complex subunit 2
PF14838	Integrator complex subunit 5 C-terminus
PF14837	Integrator complex subunit 5 N-terminus
PF15300	INTS6/SAGE1/DDX26B/CT45 C-terminus
PF09134	Invasin, domain 3
PF03519	Invasion protein B family
PF04741	InvH outer membrane lipoprotein
PF00904	Involucrin repeat
PF06994	Involucrin
PF10583	Involucrin of squamous epithelia N-terminus
PF00552	Integrase DNA binding domain
PF00520	Ion transport protein
PF07885	Ion channel
PF08412	Ion transport protein N-terminal
PF03278	IpaB/EvcA family
PF09599	Salmonella-Shigella invasin protein C (IpaC_SipC)
PF06511	Invasion plasmid antigen IpaD
PF05925	Enterobacterial virulence protein IpgD
PF06415	BPG-independent PGAM N-terminus (iPGM_N)
PF12333	Rix1 complex component involved in 60S ribosome maturation
PF11634	Nuclease inhibitor from bacteriophage T4
PF03770	Inositol polyphosphate kinase
PF04979	Protein phosphatase inhibitor 2 (IPP-2)
PF01715	IPP transferase
PF01745	Isopentenyl transferase
PF02121	Phosphatidylinositol transfer protein
PF00612	IQ calmodulin-binding motif
PF15157	IQ-like
PF12185	Nup358/RanBP2 E3 ligase domain
PF00605	Interferon regulatory factor transcription factor
PF11261	Interferon regulatory factor 2-binding protein zinc finger
PF10401	Interferon-regulatory factor 3
PF01007	Inward rectifier potassium channel
PF08466	Inward rectifier potassium channel N-terminal
PF04120	Low affinity iron permease
PF04362	Bacterial Fe(2+) trafficking
PF10634	Fe2+ transport protein
PF02174	PTB domain (IRS-1 type)
PF06215	Infectious salmon anaemia virus haemagglutinin
PF11727	Invariant surface glycoprotein
PF10281	Putative stress-responsive nuclear envelope protein
PF02060	Slow voltage-gated potassium channel
PF06437	IMP-specific 5'-nucleotidase
PF00857	Isochorismatase family
PF00180	Isocitrate/isopropylmalate dehydrogenase
PF04279	Intracellular septation protein A
PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
PF03398	Regulator of Vps4 activity in the MVB pathway
PF01695	IstB-like ATP binding protein
PF08483	IstB-like ATP binding N-terminal
PF06246	Isy1-like splicing family
PF02189	Immunoreceptor tyrosine-based activation motif
PF10538	Immunoreceptor tyrosine-based activation motif
PF06668	Inter-alpha-trypsin inhibitor heavy chain C-terminus
PF04183	IucA / IucC family
PF01156	Inosine-uridine preferring nucleoside hydrolase
PF08816	Inhibitor of vertebrate lysozyme (Ivy)
PF15005	Izumo sperm-egg fusion
PF01608	I/LWEQ domain
PF01398	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
PF01419	Jacalin-like lectin domain
PF14804	Jag N-terminus
PF15351	Junctional protein associated with coronary artery disease
PF06585	Haemolymph juvenile hormone binding protein (JHBP)
PF15038	Jiraiya
PF14901	Cleavage inducing molecular chaperone
PF02373	JmjC domain, hydroxylase
PF02375	jmjN domain
PF09744	JNK_SAPK-associated protein-1
PF02099	Josephin
PF15392	Joubert syndrome-associated
PF15312	Junctional sarcoplasmic reticulum protein
PF05439	Jumping translocation breakpoint protein (JTB)
PF03957	Jun-like transcription factor
PF01486	K-box region
PF09080	K cyclin, C terminal
PF02960	K1 glycoprotein
PF15352	Susceptibility to monomelic amyotrophy
PF08065	K167R (NUC007) repeat
PF02149	Kinase associated domain 1
PF15354	Kidney-associated antigen 1
PF07688	KaiA domain
PF07689	KaiB domain
PF06745	KaiC
PF05804	Kinesin-associated protein (KAP)
PF08810	Kinase associated protein B
PF07693	KAP family P-loop domain
PF15222	Kidney androgen-regulated
PF08580	Yeast cortical protein KAR9
PF10541	Nuclear envelope localisation domain
PF08214	Histone acetylation protein
PF13925	con80 domain of Katanin
PF00050	Kazal-type serine protease inhibitor domain
PF07648	Kazal-type serine protease inhibitor domain
PF14089	KinB-signalling pathway activation in sporulation
PF12309	KIF-1 binding protein C terminal
PF03522	K-Cl Co-transporter type 1 (KCC1)
PF09303	KCNMB2, ball and chain domain
PF11956	Ankyrin-G binding motif of KCNQ2-3
PF03520	KCNQ voltage-gated potassium channel
PF06178	Oligogalacturonate-specific porin protein (KdgM)
PF03812	2-keto-3-deoxygluconate permease
PF06293	Lipopolysaccharide kinase (Kdo/WaaP) family
PF11004	3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase
PF03814	Potassium-transporting ATPase A subunit
PF02669	K+-transporting ATPase, c chain
PF02702	Osmosensitive K+ channel His kinase sensor domain
PF04962	KduI/IolB family
PF08552	Inositolphosphorylceramide synthase subunit Kei1
PF01344	Kelch motif
PF07646	Kelch motif
PF13415	Galactose oxidase, central domain
PF13418	Galactose oxidase, central domain
PF13854	Kelch motif
PF13964	Kelch motif
PF02422	Keratin
PF09775	Keratinocyte-associated protein 2
PF01500	Keratin, high sulfur B2 protein
PF13885	Keratin, high sulfur B2 protein
PF04579	Keratin, high-sulphur matrix protein
PF00109	Beta-ketoacyl synthase, N-terminal domain
PF13723	Beta-ketoacyl synthase, N-terminal domain
PF02801	Beta-ketoacyl synthase, C-terminal domain
PF11740	Plasmid replication region DNA-binding N-term
PF10685	Stress-induced bacterial acidophilic repeat motif
PF08872	KGK domain
PF00013	KH domain
PF07650	KH domain
PF13014	KH domain
PF13083	KH domain
PF13184	NusA-like KH domain
PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
PF15369	Uncharacterised protein KIAA1328
PF13879	KIAA1430 homologue
PF03882	KicB killing factor
PF02524	KID repeat
PF12423	Kinesin protein 1B
PF04383	KilA-N domain
PF10357	Domain of Kin17 curved DNA-binding protein
PF14531	Kinase-like
PF03618	Kinase/pyrophosphorylase
PF00225	Kinesin motor domain
PF06548	Kinesin-related
PF12711	Kinesin motor
PF08568	Uncharacterised protein family, YAP/Alf4/glomulin
PF12709	Central kinetochore-associated
PF08260	Insect kinin peptide
PF15033	Kinocilin protein
PF07765	KIP1-like protein
PF15152	Kisspeptin
PF02172	KIX domain
PF15204	Kita-kyushu lung cancer antigen 1
PF10205	Predicted coiled-coil domain-containing protein
PF03037	Kinetoplastid membrane protein 11
PF03790	KNOX1 domain
PF03791	KNOX2 domain
PF07827	KNTase C-terminal domain
PF12075	KN motif
PF09762	Coiled-coil domain-containing protein (DUF2037)
PF08535	KorB domain
PF06613	KorB C-terminal beta-barrel domain
PF00467	KOW motif
PF09044	Kp4
PF08659	KR domain
PF01352	KRAB box
PF14722	Ki-ras-induced actin-interacting protein-IP3R-interacting domain
PF15287	KRBA1 family repeat
PF05390	Yeast cell wall synthesis protein KRE9/KNH1
PF05178	KRI1-like family
PF12936	KRI1-like family C-terminal
PF00051	Kringle domain
PF11759	Keratin-associated matrix
PF15034	KRTAP type 7 family
PF15200	Keratinocyte differentiation-associated
PF11049	Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus
PF07188	Kaposi's sarcoma-associated herpesvirus (KSHV) K8 protein
PF13543	SAM like domain present in kinase suppressor RAS 1
PF08433	Chromatin associated protein KTI12
PF13619	KTSC domain
PF02735	Ku70/Ku80 beta-barrel domain
PF10520	Kua-ubiquitin conjugating enzyme hybrid localisation domain
PF00014	Kunitz/Bovine pancreatic trypsin inhibitor domain
PF00197	Trypsin and protease inhibitor
PF03730	Ku70/Ku80 C-terminal arm
PF03731	Ku70/Ku80 N-terminal alpha/beta domain
PF08785	Ku C terminal domain like
PF03521	Kv2 voltage-gated K+ channel
PF10241	Uncharacterized conserved protein
PF07941	Potassium channel Kv1.4 tandem inactivation domain
PF13434	L-lysine 6-monooxygenase (NADPH-requiring)
PF02705	K+ potassium transporter
PF05849	Fibroin light chain (L-fibroin)
PF02442	Lipid membrane protein of large eukaryotic DNA viruses
PF02828	L27 domain
PF09058	L27_1
PF09045	L27_2
PF09060	L27_N
PF09784	Mitochondrial ribosomal protein L31
PF05047	Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
PF05805	L6 membrane protein
PF02448	L71 family
PF05383	La domain
PF09220	L-A virus, major coat protein
PF07578	Lipid A Biosynthesis N-terminal domain
PF02502	Ribose/Galactose Isomerase
PF00356	Bacterial regulatory proteins, lacI family
PF09330	D-lactate dehydrogenase, membrane binding
PF00753	Metallo-beta-lactamase superfamily
PF12706	Beta-lactamase superfamily domain
PF13483	Beta-lactamase superfamily domain
PF13691	tRNase Z endonuclease
PF14597	Metallo-beta-lactamase superfamily
PF02652	L-lactate permease
PF04369	Lactococcin-like family
PF09683	Bacteriocin (Lactococcin_972)
PF10282	Lactonase, 7-bladed beta-propeller
PF09508	Lacto-N-biose phosphorylase
PF01306	LacY proton/sugar symporter
PF06543	Lactococcus bacteriophage repressor
PF09271	LAG1, DNA binding
PF00961	LAGLIDADG endonuclease
PF03161	LAGLIDADG DNA endonuclease family
PF14528	LAGLIDADG-like domain
PF14527	WhiA LAGLIDADG-like domain
PF02264	LamB porin
PF06291	Bor protein
PF02061	Lambda Phage CIII
PF06301	Bacteriophage lambda Kil protein
PF06805	Bacteriophage lambda tail assembly protein I
PF03746	LamB/YcsF family
PF00052	Laminin B (Domain IV)
PF00053	Laminin EGF-like (Domains III and V)
PF00054	Laminin G domain
PF02210	Laminin G domain
PF13385	Concanavalin A-like lectin/glucanases superfamily
PF06008	Laminin Domain I
PF06009	Laminin Domain II
PF00055	Laminin N-terminal (Domain VI)
PF01299	Lysosome-associated membrane glycoprotein (Lamp)
PF06403	Lamprin
PF15454	Late endosomal/lysosomal adaptor and MAPK and MTOR activator
PF12544	Lysine-2,3-aminomutase
PF05147	Lanthionine synthetase C-like protein
PF14867	Lantibiotic alpha
PF04738	Lantibiotic dehydratase, C terminus
PF04737	Lantibiotic dehydratase, N terminus
PF05609	Lamina-associated polypeptide 1C (LAP1C)
PF11560	Lamina-associated polypeptide 2 alpha
PF10169	Learning-associated protein
PF14354	Restriction alleviation protein Lar
PF04031	Las1-like
PF15234	Linker for activation of T-cells
PF10279	Latarcin precursor
PF06907	Latexin
PF00500	L1 (late) protein
PF00513	Late Protein L2
PF02354	Latrophilin Cytoplasmic C-terminal region
PF15658	Latrotoxin C-terminal domain
PF15317	Cardiac transcription factor regulator, Developmental protein
PF01273	LBP / BPI / CETP family, N-terminal domain
PF02886	LBP / BPI / CETP family, C-terminal domain
PF09465	Lamin-B receptor of TUDOR domain
PF02450	Lecithin:cholesterol acyltransferase
PF03815	LCCL domain
PF09798	DNA damage checkpoint protein
PF14672	Late cornified envelope
PF12197	Bacillus cereus group antimicrobial protein
PF04072	Leucine carboxyl methyltransferase
PF11632	Lactococcin G-beta
PF07216	LcrG protein
PF09621	Type III secretion system regulator (LcrR)
PF04792	V antigen (LcrV) protein
PF13002	Arrestin_N terminal like
PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
PF00056	lactate/malate dehydrogenase, NAD binding domain
PF02615	Malate/L-lactate dehydrogenase
PF00057	Low-density lipoprotein receptor domain class A
PF00058	Low-density lipoprotein receptor repeat class B
PF12617	Iron-Sulfur binding protein C terminal
PF13940	Toxin Ldr, type I toxin-antitoxin system
PF08252	arg-2/CPA1 leader peptide
PF08253	Erm Leader peptide
PF08254	Threonine leader peptide
PF08255	Trp-operon Leader Peptide
PF07359	Liver-expressed antimicrobial peptide 2 precursor (LEAP-2)
PF03760	Late embryogenesis abundant (LEA) group 1
PF03168	Late embryogenesis abundant protein
PF03242	Late embryogenesis abundant protein
PF02987	Late embryogenesis abundant protein
PF00477	Small hydrophilic plant seed protein
PF10714	Late embryogenesis abundant protein 18
PF15619	Ciliary protein causing Leber congenital amaurosis disease
PF00059	Lectin C-type domain
PF03388	Legume-like lectin family
PF00139	Legume lectin domain
PF03954	Hepatic lectin, N-terminal domain
PF11467	Lens epithelium-derived growth factor (LEDGF)
PF05098	Late expression factor 4 (LEF-4)
PF04941	Late expression factor 8 (LEF-8)
PF05094	Late expression factor 9 (LEF-9)
PF05150	Legionella pneumophila major outer membrane protein precursor
PF07858	Limonene-1,2-epoxide hydrolase catalytic domain
PF15042	Late cornified envelope-like proline-rich protein 1
PF03020	LEM domain
PF04011	LemA family
PF08262	Leucophaea maderae tachykinin-related peptide
PF02998	Lentiviral Tat protein
PF05851	Lentivirus virion infectivity factor (VIF)
PF07401	Bovine Lentivirus VIF protein
PF04004	Leo1-like protein
PF15221	Lens epithelial cell protein LEP503
PF06421	GTP-binding protein LepA C-terminus
PF02024	Leptin
PF06328	Ig-like C2-type domain
PF07766	LETM1-like protein
PF08502	LeuA allosteric (dimerisation) domain
PF14795	Leucine-tRNA synthetase-specific domain
PF09127	Leukotriene A4 hydrolase, C-terminal
PF15197	Leukemia-associated protein 2
PF07968	Leukocidin/Hemolysin toxin family
PF08054	Leucine operon leader peptide
PF03588	Leucyl/phenylalanyl-tRNA protein transferase
PF15294	Leucine zipper
PF01819	Levivirus coat protein
PF01726	LexA DNA binding domain
PF11488	Transcriptional regulatory protein LGE1
PF08310	LGFP repeat
PF08596	Lethal giant larvae(Lgl) like, C-terminal
PF01790	Prolipoprotein diacylglyceryl transferase
PF00556	Antenna complex alpha/beta subunit
PF14411	A nuclease of the HNH/ENDO VII superfamily with conserved LHH
PF04991	LicD family
PF01291	LIF / OSM family
PF07746	Aromatic-ring-opening dioxygenase LigAB, LigA subunit
PF00549	CoA-ligase
PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
PF13298	DNA polymerase Ligase (LigD)
PF02834	LigT like Phosphoesterase
PF00060	Ligand-gated ion channel
PF10613	Ligated ion channel L-glutamate- and glycine-binding site
PF00412	LIM domain
PF15332	Lck-interacting transmembrane adapter 1
PF11608	Limkain b1
PF01803	LIM-domain binding protein
PF03353	Ras-mediated vulval-induction antagonist
PF09585	Conserved hypothetical protein (Lin0512_fam)
PF15306	LIN37
PF14695	Lines C-terminus
PF14694	Lines N-terminus
PF00538	linker histone H1 and H5 family
PF04454	Encapsulating protein for peroxidase
PF03583	Secretory lipase
PF00151	Lipase
PF03893	Lipase 3 N-terminal region
PF01674	Lipase (class 2)
PF01764	Lipase (class 3)
PF12262	Bacterial virulence factor lipase N-terminal
PF03280	Proteobacterial lipase chaperone protein
PF00657	GDSL-like Lipase/Acylhydrolase
PF13472	GDSL-like Lipase/Acylhydrolase family
PF14606	GDSL-like Lipase/Acylhydrolase family
PF12888	Lipid-binding putative hydrolase
PF08557	Sphingolipid Delta4-desaturase (DES)
PF04571	lipin, N-terminal conserved region
PF12103	Surface lipoprotein of Spirochaetales order
PF00061	Lipocalin / cytosolic fatty-acid binding protein family
PF08212	Lipocalin-like domain
PF12702	Lipocalin-like
PF13648	Lipocalin-like domain
PF13924	Lipocalin-like domain
PF13944	Lipocalin-like domain
PF14651	Lipocalin / cytosolic fatty-acid binding protein family
PF00820	Borrelia lipoprotein
PF03202	Putative mycoplasma lipoprotein, C-terminal region
PF03260	Lepidopteran low molecular weight (30 kD) lipoprotein
PF03640	Secreted repeat of unknown function
PF03923	Uncharacterized lipoprotein
PF04200	Lipoprotein associated domain
PF06804	NlpB/DapX lipoprotein
PF13617	YnbE-like lipoprotein
PF00921	Borrelia lipoprotein
PF13942	YfhG lipoprotein
PF14041	LppP/LprE lipoprotein
PF00938	Lipoprotein
PF01298	Transferrin binding protein-like solute binding protein
PF01441	Lipoprotein
PF01540	Adhesin lipoprotein
PF02030	Hypothetical lipoprotein (MG045 family)
PF03180	NLPA lipoprotein
PF07553	Host cell surface-exposed lipoprotein
PF03305	Mycoplasma MG185/MG260 protein
PF08794	Lipoprotein GNA1870 C terminal like
PF00305	Lipoxygenase
PF03279	Bacterial lipid A biosynthesis acyltransferase
PF10437	Bacterial lipoate protein ligase C-terminus
PF07207	Light regulated protein Lir1
PF08513	LisH
PF14954	Limb expression 1
PF15478	Family of unknown function with LKAAEAR motif
PF06261	Actinobacillus actinomycetemcomitans leukotoxin activator LktC
PF14945	Normal lung function maintenance, Low in Lung Cancer 1 protein
PF08366	LLGL2
PF04791	LMBR1-like membrane protein
PF06762	Lipase maturation factor
PF14421	A distinct subfamily of CDD/CDA-like deaminases
PF04778	LMP repeated region
PF07988	LMSTEN motif
PF01451	Low molecular weight phosphotyrosine protein phosphatase
PF12211	Low molecular weight S layer protein N terminal
PF15419	Leukemia NUP98 fusion partner 1
PF08235	LNS2 (Lipin/Ned1/Smp2)
PF10158	Tumour suppressor protein
PF03548	Outer membrane lipoprotein carrier protein LolA
PF03550	Outer membrane lipoprotein LolB
PF02190	ATP-dependent protease La (LON) domain
PF13774	Regulated-SNARE-like domain
PF13337	Putative ATP-dependent Lon protease
PF05362	Lon protease (S16) C-terminal proteolytic domain
PF08139	Prokaryotic membrane lipoprotein lipid attachment site
PF13627	Prokaryotic lipoprotein-attachment site
PF04728	Lipoprotein leucine-zipper
PF10738	Probable lipoprotein LpqN
PF02169	LPP20 lipoprotein
PF04348	LppC putative lipoprotein
PF06835	Lipopolysaccharide-assembly, LptC-related
PF04390	Lipopolysaccharide-assembly
PF02684	Lipid-A-disaccharide synthetase
PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
PF02606	Tetraacyldisaccharide-1-P 4'-kinase
PF04970	Lecithin retinol acyltransferase
PF03788	LrgA family
PF04172	LrgB-like family
PF15176	Leucine-rich repeat family 19 TM domain
PF14914	LRRC37A/B like protein 1 C-terminal domain
PF01463	Leucine rich repeat C-terminal domain
PF01462	Leucine rich repeat N-terminal domain
PF08263	Leucine rich repeat N-terminal domain
PF00560	Leucine Rich Repeat
PF07723	Leucine Rich Repeat
PF07725	Leucine Rich Repeat
PF12799	Leucine Rich repeats (2 copies)
PF13306	Leucine rich repeats (6 copies)
PF13516	Leucine Rich repeat
PF13504	Leucine rich repeat
PF13855	Leucine rich repeat
PF14580	Leucine-rich repeat
PF08191	LRR adjacent
PF10422	Monopolin complex subunit LRS4
PF01816	Leucine rich repeat variant
PF05484	LRV protein FeS4 cluster
PF01423	LSM domain
PF12701	Scd6-like Sm domain
PF06741	LsmAD domain
PF14894	Lsm C-terminal
PF05391	Lsm interaction motif
PF06049	Coagulation Factor V LSPD Repeat
PF05624	Lipolysis stimulated receptor (LSR)
PF11774	Lsr2
PF14067	LssY C-terminus
PF05083	LST-1 protein
PF06453	Type II heat-labile enterotoxin , B subunit (LT-IIB)
PF00932	Lamin Tail Domain
PF14368	Probable lipid transfer
PF06772	Bacterial low temperature requirement A protein (LtrA)
PF04180	Low temperature viability protein
PF07813	LTXXQ motif family protein
PF03194	LUC7 N_terminus
PF10284	Luciferase helical bundle domain
PF10285	Luciferase catalytic domain
PF05295	Luciferase/LBP N-terminal domain
PF12870	Lumazine-binding domain
PF12893	Putative lumazine-binding
PF00677	Lumazine binding domain
PF06814	Lung seven transmembrane receptor
PF14854	Leucine rich adaptor protein
PF14625	Lustrin, cysteine-rich repeated domain
PF00894	Luteovirus coat protein
PF08467	Luteovirus RNA polymerase P1-P2/replicase
PF04662	Luteovirus P0 protein
PF01659	Luteovirus putative VPg genome linked protein
PF05893	Acyl-CoA reductase (LuxC)
PF04443	Acyl-protein synthetase, LuxE
PF09308	LuxQ, periplasmic
PF02664	S-Ribosylhomocysteinase (LuxS)
PF08309	LVIVD repeat
PF04740	LXG domain of WXG superfamily
PF06579	Caenorhabditis elegans ly-6-related protein
PF08391	Ly49-like protein, N-terminal region
PF00206	Lyase
PF02278	Polysaccharide lyase family 8, super-sandwich domain
PF02884	Polysaccharide lyase family 8, C-terminal beta-sandwich domain
PF08124	Polysaccharide lyase family 8, N terminal alpha-helical domain
PF00221	Aromatic amino acid lyase
PF09093	Lyase, catalytic
PF09092	Lyase, N terminal
PF05834	Lycopene cyclase protein
PF00062	C-type lysozyme/alpha-lactalbumin family
PF09043	D-Lysine 5,6-aminomutase alpha subunit
PF01810	LysE type translocator
PF03641	Possible lysine decarboxylase
PF02402	Lysis protein
PF04971	Lysis protein S
PF01476	LysM domain
PF13702	Lysozyme-like
PF03466	LysR substrate binding domain
PF01186	Lysyl oxidase
PF02401	LytB protein
PF13399	LytR cell envelope-related transcriptional attenuator
PF03816	Cell envelope-related transcriptional attenuator domain
PF04397	LytTr DNA-binding domain
PF14389	Leucine-zipper of ternary complex factor MIP1
PF13011	leucine-zipper of insertion element IS481
PF13007	Transposase C of IS166 homeodomain
PF04604	Type-A lantibiotic
PF10242	Lipoma HMGIC fusion partner-like protein
PF06673	Lactococcus lactis bacteriophage major capsid protein
PF06430	Lactococcus lactis RepB C-terminus
PF06488	Lactococcus lactis bacteriophage major structural protein
PF15518	L protein N-terminus
PF02370	M protein repeat
PF03855	M-factor
PF06617	M-phase inducer phosphatase
PF12216	Immune evasion protein
PF11099	Apoptosis regulator M11L like
PF11624	MHC class I-like protein M157
PF08367	Peptidase M16C associated
PF07687	Peptidase dimerisation domain
PF09213	M3
PF13402	Peptidase M60-like family
PF09245	Mycoplasma arthritidis-derived mitogen
PF02847	MA3 domain
PF07476	Methylaspartate ammonia-lyase C-terminus
PF05034	Methylaspartate ammonia-lyase N-terminus
PF03281	Mab-21 protein
PF12464	Maltose acetyltransferase
PF09028	Mac 1
PF12704	MacB-like periplasmic core domain
PF14865	Macin
PF09726	Transmembrane protein
PF01823	MAC/Perforin domain
PF01661	Macro domain
PF14519	Macro-like domain
PF03523	Macrophage scavenger receptor
PF05557	Mitotic checkpoint protein
PF08311	Mad3/BUB1 homology region 1
PF08171	Mad3/BUB1 homology region 2
PF10545	Alcohol dehydrogenase transcription factor Myb/SANT-like
PF03817	Malonate transporter MadL subunit
PF03818	Malonate/sodium symporter MadM subunit
PF13017	piRNA pathway germ-plasm component
PF02545	Maf-like protein
PF09174	Maf1 regulator
PF14437	MafB19-like deaminase
PF12750	Maff2 family
PF01973	Protein of unknown function DUF115
PF08383	Maf N-terminal region
PF01454	MAGE family
PF12440	Melanoma associated antigen family N terminal
PF09282	Mago binding
PF02792	Mago nashi protein
PF05507	Microfibril-associated glycoprotein (MAGP)
PF03082	Male accessory gland secretory protein
PF10608	Polyubiquitination (PEST) N-terminal domain of MAGUK
PF04112	Mak10 subunit, NatC N(alpha)-terminal acetyltransferase
PF04874	Mak16 protein C-terminal region
PF12434	Malate dehydrogenase enzyme
PF01274	Malate synthase
PF11721	Di-glucose binding within endoplasmic reticulum
PF12819	Carbohydrate-binding protein of the ER
PF14785	Maltose transport system permease protein MalF P2 domain
PF00390	Malic enzyme, N-terminal domain
PF03949	Malic enzyme, NAD binding domain
PF07148	Maltose operon periplasmic protein precursor (MalM)
PF00629	MAM domain
PF10434	Monopolin complex protein MAM1
PF02330	Mitochondrial glycoprotein
PF09596	MamL-1 domain
PF02157	Mannose-6-phosphate receptor
PF07502	MANEC domain
PF01232	Mannitol dehydrogenase Rossmann domain
PF08125	Mannitol dehydrogenase C-terminal domain
PF01050	Mannose-6-phosphate isomerase
PF05007	Mannosyltransferase (PIG-M)
PF04188	Mannosyltransferase (PIG-V))
PF11051	Mannosyltransferase putative
PF01575	MaoC like domain
PF13452	N-terminal half of MaoC dehydratase
PF03642	MAP domain
PF00414	Neuraxin and MAP1B repeat
PF08377	MAP2/Tau projection domain
PF03999	Microtubule associated protein (MAP65/ASE1 family)
PF05672	MAP7 (E-MAP-115) family
PF01124	MAPEG family
PF08923	Mitogen-activated protein kinase kinase 1 interacting
PF13999	MarB protein
PF01914	MarC family integral membrane protein
PF02063	MARCKS family
PF02124	Marek's disease glycoprotein A
PF07153	Marek's disease-like virus SORF3 protein
PF01047	MarR family
PF12802	MarR family
PF01284	Membrane-associating domain
PF10564	Sialic-acid binding micronemal adhesive repeat
PF02064	MAS20 protein import receptor
PF05231	MASE1
PF05230	MASE2 domain
PF08249	Mastoparan protein
PF08251	Mastoparan peptide
PF06391	CDK-activating kinase assembly factor MAT1
PF07158	Dicarboxylate carrier protein MatC N-terminus
PF01554	MatE
PF00917	MATH domain
PF12737	C-terminal domain of homeodomain 1
PF12731	Mating-type protein beta 1
PF01824	MatK/TrnK amino terminal region
PF06303	Organiser of macrodomain of Terminus of chromosome
PF10393	Trimeric coiled-coil oligomerisation domain of matrilin
PF00661	Viral matrix protein
PF04769	Mating-type protein MAT alpha 1
PF07291	Methylamine utilisation protein MauE
PF03819	MazG nucleotide pyrophosphohydrolase domain
PF12643	MazG-like family
PF07961	MBA1-like protein
PF01429	Methyl-CpG binding domain
PF14048	C-terminal domain of methyl-CpG binding protein 2 and 3
PF04837	MbeB-like, N-term conserved region
PF04899	MbeD/MobD like
PF08523	Multiprotein bridging factor 1
PF03062	MBOAT, membrane-bound O-acyltransferase family
PF13813	Membrane bound O-acyl transferase family
PF02820	mbt repeat
PF03621	MbtH-like protein
PF05854	Non-histone chromosomal protein MC1
PF10506	PDZ domain of MCC-2 bdg protein for Usher syndrome
PF05292	Malonyl-CoA decarboxylase (MCD)
PF02470	mce related protein
PF02289	Cyclohydrolase (MCH)
PF05934	Mid-1-related chloride channel (MCLC)
PF00493	MCM2/3/5 family
PF09332	Mcm10 replication factor
PF12619	Mini-chromosome maintenance protein 2
PF09739	Mini-chromosome maintenance replisome factor
PF14551	MCM N-terminal domain
PF12814	Meiotic cell cortex C-terminal pleckstrin homology
PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
PF02993	Minor capsid protein VI
PF05581	Vibrio chemotaxis protein N terminus
PF10117	McrBC 5-methylcytosine restriction system component
PF13325	N-terminal region of micro-spherule protein
PF02249	Methyl-coenzyme M reductase alpha subunit, C-terminal domain
PF02745	Methyl-coenzyme M reductase alpha subunit, N-terminal domain
PF02241	Methyl-coenzyme M reductase beta subunit, C-terminal domain
PF02783	Methyl-coenzyme M reductase beta subunit, N-terminal domain
PF04609	Methyl-coenzyme M reductase operon protein C
PF02505	Methyl-coenzyme M reductase operon protein D
PF02240	Methyl-coenzyme M reductase gamma subunit
PF12593	Microcystin synthetase C terminal
PF06833	Malonate decarboxylase gamma subunit (MdcE)
PF10620	Phosphoribosyl-dephospho-CoA transferase MdcG
PF15316	MyoD family inhibitor
PF02315	Methanol dehydrogenase beta subunit
PF15501	Nuclear protein MDM1
PF08118	Yeast mitochondrial distribution and morphology (MDM) proteins
PF07398	MDMPI C-terminal domain
PF11716	Mycothiol maleylpyruvate isomerase N-terminal domain
PF04349	Periplasmic glucan biosynthesis protein, MdoG
PF11542	Mitochondrial division protein 1
PF06433	Methylamine dehydrogenase heavy chain (MADH)
PF02975	Methylamine dehydrogenase, L chain
PF06910	Male enhanced antigen 1 (MEA1)
PF05301	Touch receptor neuron protein Mec-17
PF05389	Negative regulator of genetic competence (MecA)
PF05223	NTF2-like N-terminal transpeptidase domain
PF09773	Meckelin (Transmembrane protein 67)
PF10744	Mediator of RNA polymerase II transcription subunit 1
PF09748	Transcription factor subunit Med10 of Mediator complex
PF10280	Mediator complex protein
PF09497	Transcription mediator complex subunit Med12
PF12145	Eukaryotic Mediator 12 subunit domain
PF12144	Eukaryotic Mediator 12 catenin-binding domain
PF06333	Mediator complex subunit 13 C-terminal
PF11597	Mediator complex subunit 13 N-terminal
PF08638	Mediator complex subunit MED14
PF09606	ARC105 or Med15 subunit of Mediator complex non-fungal
PF05397	Mediator complex subunit 15
PF11635	Mediator complex subunit 16
PF10156	Subunit 17 of Mediator complex
PF09637	Med18 protein
PF10278	Mediator of RNA pol II transcription subunit 19
PF11214	Mediator complex subunit 2
PF08612	TATA-binding related factor (TRF) of subunit 20 of Mediator complex
PF11221	Subunit 21 of Mediator complex
PF06179	Surfeit locus protein 5 subunit 22 of Mediator complex
PF11573	Mediator complex subunit 23
PF11277	Mediator complex subunit 24 N-terminal
PF11232	Mediator complex subunit 25 PTOV activation and synapsin 2
PF11244	Mediator complex subunit 25 C-terminal NR box-containing
PF11235	Mediator complex subunit 25 synapsin 1
PF11265	Mediator complex subunit 25 von Willebrand factor type A
PF08711	TFIIS helical bundle-like domain
PF11571	Mediator complex subunit 27
PF11594	Mediator complex subunit 28
PF11568	Mediator complex subunit 29
PF11593	Mediator complex subunit 3 fungal
PF11315	Mediator complex subunit 30
PF05669	SOH1
PF10018	Vitamin-D-receptor interacting Mediator subunit 4
PF08689	Mediator complex subunit Med5
PF04934	MED6 mediator sub complex component
PF05983	MED7 protein
PF10232	Mediator of RNA polymerase II transcription complex subunit 8
PF07544	RNA polymerase II transcription mediator complex subunit 9
PF14417	MEDS: MEthanogen/methylotroph, DcmR Sensory domain
PF09047	MEF2 binding
PF13971	Meiosis-specific protein Mei4
PF10376	Double-strand recombination repair protein
PF15163	Meiosis-expressed
PF03525	Meiotic recombination protein rec114
PF08670	MEKHLA domain
PF06236	Tyrosinase co-factor MelC1
PF08189	Meleagrin/Cygnin family
PF02065	Melibiase
PF01372	Melittin
PF09746	Tumour-associated protein
PF14564	Membrane binding
PF10540	Munc13 (mammalian uncoordinated) homology domain
PF01875	Memo-like protein
PF02964	Methane monooxygenase, hydrolase gamma chain
PF03547	Membrane transport protein
PF05053	Menin
PF10457	Cholesterol-capturing domain
PF08877	MepB protein
PF09074	Mer2
PF03243	Alkylmercury lyase
PF03203	MerC mercury resistance protein
PF05052	MerE protein
PF07133	Merozoite surface protein (SPAM)
PF00376	MerR family regulatory protein
PF09278	MerR, DNA binding
PF13411	MerR HTH family regulatory protein
PF13591	MerR HTH family regulatory protein
PF02411	MerT mercuric transport protein
PF10185	Chaperone for wingless signalling and trafficking of LDL receptor
PF06060	Pre-pro-megakaryocyte potentiating factor precursor (Mesothelin)
PF03724	META domain
PF01676	Metalloenzyme superfamily
PF12044	Putative peptidase family
PF00149	Calcineurin-like phosphoesterase
PF12850	Calcineurin-like phosphoesterase superfamily domain
PF14582	Metallophosphoesterase, calcineurin superfamily
PF14008	Iron/zinc purple acid phosphatase-like protein C
PF00131	Metallothionein
PF02066	Metallothionein family 11
PF01439	Metallothionein
PF02067	Metallothionein family 5
PF05522	Metallothionein
PF07846	Metallothionein family
PF12749	Eukaryotic metallothionein
PF02068	Plant PEC family metallothionein
PF02069	Prokaryotic metallothionein
PF12809	Eukaryotic metallothionein
PF14455	Predicted metal binding domain
PF10118	Predicted metal-dependent hydrolase
PF13801	Heavy-metal resistance
PF09595	Metaviral_G glycoprotein
PF06652	Methuselah N-terminus
PF01420	Type I restriction modification DNA specificity domain
PF02086	D12 class N6 adenine-specific DNA methyltransferase
PF05971	Protein of unknown function (DUF890)
PF08241	Methyltransferase domain
PF08242	Methyltransferase domain
PF08421	Putative zinc binding domain
PF08484	C-methyltransferase C-terminal domain
PF09445	RNA cap guanine-N2 methyltransferase
PF10294	Putative methyltransferase
PF12692	S-adenosyl-L-methionine methyltransferase
PF12847	Methyltransferase domain
PF04672	S-adenosyl methyltransferase
PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
PF00891	O-methyltransferase
PF12147	Putative methyltransferase
PF05050	Methyltransferase FkbM domain
PF13383	Methyltransferase domain
PF13489	Methyltransferase domain
PF13578	Methyltransferase domain
PF13649	Methyltransferase domain
PF13659	Methyltransferase domain
PF13708	Methyltransferase domain
PF02636	Putative S-adenosyl-L-methionine-dependent methyltransferase
PF03141	Putative S-adenosyl-L-methionine-dependent methyltransferase
PF01596	O-methyltransferase
PF05430	S-adenosyl-L-methionine-dependent methyltransferase
PF13847	Methyltransferase domain
PF13679	Methyltransferase domain
PF10017	Histidine-specific methyltransferase, SAM-dependent
PF02390	Putative methyltransferase
PF01795	MraW methylase family
PF03737	Demethylmenaquinone methyltransferase
PF03492	SAM dependent carboxyl methyltransferase
PF05148	Hypothetical methyltransferase
PF08003	Protein of unknown function (DUF1698)
PF12248	Farnesoic acid 0-methyl transferase
PF05891	AdoMet dependent proline di-methyltransferase
PF14314	Virus-capping methyltransferase
PF04452	RNA methyltransferase
PF10672	S-adenosylmethionine-dependent methyltransferase
PF04013	Putative SAM-dependent RNA methyltransferase
PF02598	Putative RNA methyltransferase
PF09936	SAM-dependent RNA methyltransferase
PF10119	Predicted methyltransferase regulatory domain
PF08267	Cobalamin-independent synthase, N-terminal domain
PF01717	Cobalamin-independent synthase, Catalytic domain
PF01340	Met Apo-repressor, MetJ
PF09635	MetRS-N binding domain
PF07021	Methionine biosynthesis protein MetW
PF02475	Met-10+ like-protein
PF06368	Methylaspartate mutase E chain (MutE)
PF06838	Methionine gamma-lyase
PF02965	Vitamin B12 dependent methionine synthase, activation domain
PF08842	Fimbrillin-A associated anchor proteins Mfa1 and Mfa2
PF07777	G-box binding protein MFMR
PF04202	Foot protein 3
PF12150	Cytosolic motility protein
PF07690	Major Facilitator Superfamily
PF12832	MFS_1 like family
PF13347	MFS/sugar transport protein
PF05977	Transmembrane secretion effector
PF07672	Mycoplasma MFS transporter
PF04648	Yeast mating factor alpha hormone
PF05436	Mating factor alpha precursor N-terminus
PF07109	Magnesium-protoporphyrin IX methyltransferase C-terminus
PF11974	Alpha-2-macroglobulin MG1 domain
PF09644	Mg296 protein
PF05043	Mga helix-turn-helix domain
PF05060	N-acetylglucosaminyltransferase II (MGAT2)
PF05283	Multi-glycosylated core protein 24 (MGC-24)
PF06925	Monogalactosyldiacylglycerol (MGDG) synthase
PF06420	Mitochondrial genome maintenance MGM101
PF05220	MgpC protein precursor
PF08602	Mgr1-like, i-AAA protease complex subunit
PF13998	MgrB protein
PF02142	MGS-like domain
PF12002	MgsA AAA+ ATPase C terminal
PF02308	MgtC family
PF01769	Divalent cation transporter
PF03448	MgtE intracellular N domain
PF01078	Magnesium chelatase, subunit ChlI
PF13335	Magnesium chelatase, subunit ChlI
PF05653	Magnesium transporter NIPA
PF03165	MH1 domain
PF03166	MH2 domain
PF09307	CLIP, MHC2 interacting
PF08831	Class II MHC-associated invariant chain trimerisation domain
PF00129	Class I Histocompatibility antigen, domains alpha 1 and 2
PF00993	Class II histocompatibility antigen, alpha domain
PF00969	Class II histocompatibility antigen, beta domain
PF14586	Class I Histocompatibility antigen, NKG2D ligand, domains 1 and 2
PF06623	MHC_I C-terminus
PF12829	Transcriptional regulation of mitochondrial recombination
PF03707	Bacterial signalling protein N terminal repeat
PF06175	tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)
PF13794	tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like
PF09117	MiAMP1
PF02426	Muconolactone delta-isomerase
PF06701	Mib_herc2
PF07035	Colon cancer-associated protein Mic1-like
PF12258	Microcephalin protein
PF03526	Colicin E1 (microcin) immunity protein
PF07989	Microtubule associated
PF13931	Kinesin-associated microtubule-binding
PF04687	Microvirus H protein (pilot protein)
PF04726	Microvirus J protein
PF04517	Microvirus lysis protein (E), C terminus
PF12929	Stretch-activated Ca2+-permeable channel component
PF04478	Mid2 like cell wall stress sensor
PF01187	Macrophage migration inhibitory factor (MIF)
PF15624	Kinetochore CENP-C fungal homologue, Mif2, N-terminal
PF14877	Mitochondrial translation initiation factor
PF02854	MIF4G domain
PF09088	MIF4G like
PF09090	MIF4G like
PF05644	Mitochondrial and peroxisomal fission factor Mff
PF07395	Mig-14
PF06664	Wnt-binding factor required for Wnt secretion
PF12448	Kinesin associated protein
PF03775	Septum formation inhibitor MinC, C-terminal domain
PF05209	Septum formation inhibitor MinC, N-terminal domain
PF03776	Septum formation topological specificity factor MinE
PF10665	Minor capsid protein
PF11114	Minor capsid protein
PF12691	Minor capsid protein from bacteriophage
PF06763	Prophage minor tail protein Z (GPZ)
PF00230	Major intrinsic protein
PF10243	Microtubule-binding protein MIP-T3
PF06629	MltA-interacting protein MipA
PF09140	ATPase MipZ
PF02815	MIR domain
PF08477	Miro-like protein
PF05859	Mis12 protein
PF08202	Mis12-Mtw1 protein family
PF08641	Kinetochore protein Mis14 like
PF10644	Misato Segment II tubulin-like domain
PF11458	Membrane-integrating protein Mistic
PF04212	MIT (microtubule interacting and transport) domain
PF13012	Maintenance of mitochondrial structure and function
PF11093	Mitochondrial export protein Som1
PF09776	Mitochondrial ribosomal protein L55
PF09731	Mitochondrial inner membrane protein
PF10660	Iron-containing outer mitochondrial membrane protein N-terminus
PF05919	Mitovirus RNA-dependent RNA polymerase
PF00153	Mitochondrial carrier protein
PF06258	Mitochondrial fission ELM1
PF05308	Mitochondrial fission regulator
PF14972	Mitochondrial morphogenesis regulator
PF10173	Mitochondrial K+-H+ exchange-related
PF08039	Mitochondrial proteolipid
PF11709	Mitochondrial ribosomal protein subunit
PF14724	Mitochondrial-associated sphingomyelin phosphodiesterase
PF12246	Temperature dependent protein affecting M2 dsRNA replication
PF12247	Temperature dependent protein affecting M2 dsRNA replication
PF14991	Protein melan-A
PF10248	Myelodysplasia-myeloid leukemia factor 1-interacting protein
PF09864	Membrane-bound lysozyme-inhibitor of c-type lysozyme
PF15274	Muscular LMNA-interacting protein
PF03094	Mlo family
PF03304	Mlp lipoprotein family
PF07171	MlrC C-terminus
PF03562	MltA specific insert domain
PF06474	MltD lipid attachment motif
PF03972	MmgE/PrpD family
PF10270	Membrane magnesium transporter
PF09448	Methylmuconolactone methyl-isomerase
PF02406	MmoB/DmpM family
PF09139	Mitochondrial matrix Mmp37
PF03176	MMPL family
PF08505	Mitochondrial Myo2 receptor-related protein
PF01926	50S ribosome-binding GTPase
PF08438	GTPase of unknown function C-terminal
PF12460	RNAPII transcription regulator C-terminal
PF14500	Dos2-interacting transcription regulator of RNA-Pol-II
PF10433	Mono-functional DNA-alkylating methyl methanesulfonate N-term
PF14911	S-phase genomic integrity recombination mediator, C-terminal
PF14910	S-phase genomic integrity recombination mediator, N-terminal
PF10159	Kinase phosphorylation protein
PF01054	Mouse mammary tumour virus superantigen
PF01642	Methylmalonyl-CoA mutase
PF03962	Mnd1 family
PF13762	Mitochondrial splicing apparatus component
PF04039	Domain related to MnhB subunit of Na+/H+ antiporter
PF01899	Na+/H+ ion antiporter subunit
PF07657	N terminus of Notch ligand
PF06692	Melon necrotic spot virus P7B protein
PF05067	Manganese containing catalase
PF03404	Mo-co oxidoreductase dimerisation domain
PF06967	Mo-dependent nitrogenase C-terminus
PF08569	Mo25-like
PF01967	MoaC family
PF02391	MoaE protein
PF10703	Molybdenum cofactor biosynthesis protein F
PF03637	Mob1/phocein family
PF03389	MobA/MobL family
PF03205	Molybdopterin guanine dinucleotide synthesis protein B
PF05713	Bacterial mobilisation protein (MobC)
PF01076	Plasmid recombination enzyme
PF06463	Molybdenum Cofactor Synthesis C
PF00994	Probable molybdopterin binding domain
PF12694	Putative molybdenum carrier
PF07200	Modifier of rudimentary (Mod(r)) protein
PF03454	MoeA C-terminal region (domain IV)
PF03453	MoeA N-terminal region (domain I and II)
PF05237	MoeZ/MoeB domain
PF05161	MOFRL family
PF04603	Ran-interacting Mog1 protein
PF12181	DNA binding domain of the motility gene repressor (MogR)
PF00384	Molybdopterin oxidoreductase
PF04879	Molybdopterin oxidoreductase Fe4S4 domain
PF01568	Molydopterin dinucleotide binding domain
PF03164	Trafficking protein Mon1
PF09200	Monellin
PF15626	single CXXC unit
PF14318	Mononegavirales mRNA-capping region V
PF00946	Mononegavirales RNA dependent RNA polymerase
PF04744	Monooxygenase subunit B protein
PF08765	Mor transcription activator family
PF14225	Cell morphogenesis C-terminal
PF14228	Cell morphogenesis central region
PF14222	Cell morphogenesis N-terminal
PF06451	Moricin
PF02493	MORN repeat
PF07661	MORN repeat variant
PF03473	MOSC domain
PF03476	MOSC N-terminal beta barrel domain
PF02722	Major Outer Sheath Protein C-terminal region
PF02707	Major Outer Sheath Protein N-terminal region
PF09114	Transcription factor MotA, activation domain
PF01618	MotA/TolQ/ExbB proton channel family
PF13677	Membrane MotB of proton-channel complex MotA/MotB
PF09158	Bacteriophage T4 MotA, C-terminal
PF00635	MSP (Major sperm protein) domain
PF04643	Motilin/ghrelin-associated peptide
PF04644	Motilin/ghrelin
PF04870	Moulting cycle
PF12554	Mitotic-spindle organizing gamma-tubulin ring associated
PF12926	Mitotic-spindle organizing gamma-tubulin ring associated
PF01853	MOZ/SAS family
PF01107	Viral movement protein (MP)
PF03650	Uncharacterised protein family (UPF0041)
PF15502	M-phase-specific PLK1-interacting protein
PF04006	Mpp10 protein
PF10175	M-phase phosphoprotein 6
PF07668	M penetrans paralogue family 1
PF07666	M penetrans paralogue family 26
PF09176	Methylene-tetrahydromethanopterin dehydrogenase, N-terminal
PF04117	Mpv17 / PMP22 family
PF06039	Malate:quinone oxidoreductase (Mqo)
PF15183	Melanocortin-2 receptor accessory protein family
PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
PF02381	MraZ protein
PF09444	MRC1-like domain
PF04152	Mre11 DNA-binding presumed domain
PF06723	MreB/Mbl protein
PF04085	rod shape-determining protein MreC
PF04093	rod shape-determining protein MreD
PF15155	MORF4 family-associated protein1
PF13887	Myelin gene regulatory factor -C-terminal domain 1
PF13888	Myelin gene regulatory factor C-terminal domain 2
PF05712	MRG
PF15325	Modulator of retrovirus infection
PF03022	Major royal jelly protein
PF13003	Ribosomal protein L1
PF03919	mRNA capping enzyme, C-terminal domain
PF01331	mRNA capping enzyme, catalytic domain
PF13929	mRNA stabilisation
PF02940	mRNA capping enzyme, beta chain
PF09387	Mitochondrial RNA binding protein MRP
PF14978	Mitochondrial ribosome protein 63
PF12824	Mitochondrial ribosomal protein subunit L20
PF09809	Mitochondrial ribosomal protein L27
PF09812	Mitochondrial ribosomal protein L28
PF11788	39S mitochondrial ribosomal protein L46
PF06984	Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
PF10244	Mitochondrial ribosomal subunit
PF10245	Mitochondrial 28S ribosomal protein S22
PF10484	Mitochondrial ribosomal protein S23
PF14955	Mitochondrial ribosome subunit S24
PF13741	Mitochondrial ribosomal protein S25
PF14943	Mitochondrial ribosome subunit S26
PF10037	Mitochondrial 28S ribosomal protein S27
PF10213	Mitochondrial ribosomal subunit protein
PF15433	Mitochondrial 28S ribosomal protein S31
PF10210	Mitochondrial 28S ribosomal protein S32
PF08293	Mitochondrial ribosomal subunit S27
PF10246	Mitochondrial ribosomal protein MRP-S35
PF04066	Multiple resistance and pH regulation protein F (MrpF / PhaF)
PF10780	39S ribosomal protein L53/MRP-L53
PF04471	Restriction endonuclease
PF13156	Restriction endonuclease
PF14338	Mrr N-terminal domain
PF05781	MRVI1 protein
PF01188	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
PF13378	Enolase C-terminal domain-like
PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
PF12238	Merozoite surface antigen 2c
PF00985	Merozoite Surface Antigen 2 (MSA-2) family
PF09402	Man1-Src1p-C-terminal domain
PF01741	Large-conductance mechanosensitive channel, MscL
PF12795	Mechanosensitive ion channel porin domain
PF12794	Mechanosensitive ion channel inner membrane domain 1
PF02349	Major surface glycoprotein
PF12373	Major surface glycoprotein 2 C terminal
PF14477	Membrane-polarising domain of Mso1
PF14475	Sec1-binding region of Mso1
PF01716	Manganese-stabilising protein / photosystem II polypeptide
PF11670	Major surface protein 1a (MSP1a)
PF03429	Major surface protein 1B
PF07462	Merozoite surface protein 1 (MSP1) C-terminus
PF12948	MSP7-like protein C-terminal domain
PF09203	MspA
PF04421	Mss4 protein
PF03940	Male specific sperm protein
PF11629	C terminal SARAH domain of Mst1
PF10553	MSV199 domain
PF13984	MsyB protein
PF00924	Mechanosensitive ion channel
PF12777	Microtubule-binding stalk of dynein motor
PF05063	MT-A70
PF14013	MT0933-like antitoxin protein
PF12176	Methanol-cobalamin methyltransferase B subunit
PF14920	MDM2-binding
PF14919	MDM2-binding
PF14918	MDM2-binding
PF03820	Tricarboxylate carrier
PF01993	methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase
PF02536	mTERF
PF14061	Polycomb-like MTF2 factor 2
PF07747	MTH865-like family
PF02219	Methylenetetrahydrofolate reductase
PF12225	Methylene-tetrahydrofolate reductase C terminal
PF05068	Mannitol repressor
PF05369	Monomethylamine methyltransferase MtmB
PF03083	Sugar efflux transporter for intercellular exchange
PF12808	Micro-tubular organiser Mto1 C-term Mto2-binding region
PF03821	Golgi 4-transmembrane spanning transporter
PF10558	Mitochondrial 18 KDa protein (MTP18)
PF10429	Nuclear pore RNA shuttling protein Mtr2
PF04208	Tetrahydromethanopterin S-methyltransferase, subunit A
PF05440	Tetrahydromethanopterin S-methyltransferase subunit B
PF04211	Tetrahydromethanopterin S-methyltransferase, subunit C
PF04207	Tetrahydromethanopterin S-methyltransferase, subunit D
PF04206	Tetrahydromethanopterin S-methyltransferase, subunit E
PF09472	Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF)
PF04210	Tetrahydromethanopterin S-methyltransferase, subunit G
PF02007	Tetrahydromethanopterin S-methyltransferase MtrH subunit
PF05175	Methyltransferase small domain
PF08468	Methyltransferase small domain N-terminal
PF02416	mttA/Hcf106 family
PF06253	Trimethylamine methyltransferase (MTTB)
PF05405	Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
PF05873	ATP synthase D chain, mitochondrial (ATP5H)
PF05374	Mu-Conotoxin
PF10122	Mu-like prophage protein Com
PF10124	Mu-like prophage major head subunit gpT
PF10123	Mu-like prophage I protein
PF09299	Mu transposase, C-terminal
PF15474	Meiotically up-regulated gene family
PF06458	MucBP domain
PF03888	MucB/RseB family
PF01456	Mucin-like glycoprotein
PF13330	Mucin-2 protein WxxW repeating region
PF13455	Meiotically up-regulated gene 113
PF08593	Meiotically up-regulated glycoproteins C-terminal
PF10291	Muniscin C-terminal mu homology domain
PF04310	MukB N-terminal
PF04288	MukE-like family
PF10551	MULE transposase domain
PF13447	Seven times multi-haem cytochrome CxxCH
PF00893	Small Multidrug Resistance protein
PF14452	Multiubiquitin
PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
PF01225	Mur ligase family, catalytic domain
PF02875	Mur ligase family, glutamate ligase domain
PF08245	Mur ligase middle domain
PF09462	Mus7/MMS22 family
PF11037	Insulin-resistance promoting peptide in skeletal muscle
PF06588	Muskelin N-terminus
PF01927	Mut7-C RNAse domain
PF14942	Organelle biogenesis, Muted-like protein
PF02976	DNA mismatch repair enzyme MutH
PF13941	MutL protein
PF08676	MutL C terminal dimerisation domain
PF01624	MutS domain I
PF05188	MutS domain II
PF05192	MutS domain III
PF05190	MutS family domain IV
PF00488	MutS domain V
PF15515	MvaI/BcnI restriction endonuclease family
PF09452	ESCRT-I subunit Mvb12
PF03023	MviN-like protein
PF12151	Mannan-binding protein
PF11978	Shoulder domain
PF09392	Type III secretion needle MxiH like
PF11441	Pilot protein MxiM
PF14379	MYB-CC type transfactor, LHEQLE motif
PF11831	pre-mRNA splicing factor component
PF00249	Myb-like DNA-binding domain
PF08914	Rap1 Myb domain
PF12776	Myb/SANT-like DNA-binding domain
PF13837	Myb/SANT-like DNA-binding domain
PF13873	Myb/SANT-like DNA-binding domain
PF13921	Myb-like DNA-binding domain
PF02344	Myc leucine zipper domain
PF14646	MYCBP-associated protein family
PF05423	Mycobacterium membrane protein
PF06646	High affinity transport system protein p37
PF05481	Mycobacterium 19 kDa lipoprotein antigen
PF09610	Mycoplasma virulence signal region (Myco_arth_vir_N)
PF05692	Mycoplasma haemagglutinin
PF01056	Myc amino-terminal region
PF15179	Myc target protein 1
PF10570	Myelin-PO cytoplasmic C-term p65 binding region
PF01669	Myelin basic protein
PF01275	Myelin proteolipid protein (PLP or lipophilin)
PF15004	Myeloma-overexpressed-like
PF12232	Myogenic determination factor 5
PF07058	Myosin II heavy chain-like
PF00063	Myosin head (motor domain)
PF02736	Myosin N-terminal SH3-like domain
PF01576	Myosin tail
PF06017	Myosin tail
PF00819	Myotoxin
PF06602	Myotubularin-like phosphatase domain
PF08474	Myelin transcription factor 1
PF00784	MyTH4 domain
PF10690	Myticin pre-proprotein from the mussel
PF12938	M domain of GW182
PF09113	Peptide-N-glycosidase F, C terminal
PF09112	Peptide-N-glycosidase F, N terminal
PF11764	COMPASS (Complex proteins associated with Set1p) component N
PF11474	Telomerase reverse transcriptase TEN domain
PF07923	N1221-like protein
PF07942	N2227-like protein
PF11438	36-mer N-terminal peptide of the N protein (N36)
PF10237	Probable N6-adenine methyltransferase
PF02384	N-6 DNA Methylase
PF01555	DNA methylase
PF04245	37-kD nucleoid-associated bacterial protein
PF15508	beta subunit of N-acylethanolamine-hydrolyzing acid amidase
PF04902	Conserved region in Nab1
PF11517	Nuclear abundant poly(A) RNA-bind protein 2 (Nab2)
PF10567	RNA-recognition motif
PF07990	Nucleic acid binding protein NABP
PF01849	NAC domain
PF05729	NACHT domain
PF10712	NAD-specific glutamate dehydrogenase
PF06235	NADH dehydrogenase subunit 4L (NAD4L)
PF02445	Quinolinate synthetase A protein
PF07461	Nicotine adenine dinucleotide glycohydrolase (NADase)
PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
PF10785	NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
PF06455	NADH dehydrogenase subunit 5 C-terminus
PF10125	NADH dehydrogenase I, subunit N related protein
PF00146	NADH dehydrogenase
PF12155	NADH dehydrogenase subunit 2 N-terminal
PF14987	NADH dehydrogenase 1 alpha subcomplex subunit 3
PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
PF14813	NADH dehydrogenase 1 beta subcomplex subunit 2
PF06444	NADH dehydrogenase subunit 2 C-terminus
PF15088	NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
PF08040	MNLL subunit
PF11497	NADH-quinone oxidoreductase chain 15
PF12853	C-terminal of NADH-ubiquinone oxidoreductase 21 kDa subunit
PF08414	Respiratory burst NADPH oxidase
PF00175	Oxidoreductase NAD-binding domain
PF13460	NADH(P)-binding
PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
PF03447	Homoserine dehydrogenase, NAD binding domain
PF07993	Male sterility protein
PF07994	Myo-inositol-1-phosphate synthase
PF08030	Ferric reductase NAD binding domain
PF13241	Putative NAD(P)-binding
PF13450	NAD(P)-binding Rossmann-like domain
PF13454	FAD-NAD(P)-binding
PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
PF01513	ATP-NAD kinase
PF02540	NAD synthase
PF09126	Restriction endonuclease NaeI
PF03822	NAF domain
PF07555	beta-N-acetylglucosaminidase
PF05089	Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain
PF12972	Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain
PF12971	Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain
PF07948	Nairovirus M polyprotein-like
PF02477	Nucleocapsid N protein
PF02365	No apical meristem (NAM) protein
PF14303	No apical meristem-associated C-terminal domain
PF04131	Putative N-acetylmannosamine-6-phosphate epimerase
PF05629	Nanovirus component 8 (C8) protein
PF04660	Nanovirus coat protein
PF00956	Nucleosome assembly protein (NAP)
PF03892	Nitrate reductase cytochrome c-type subunit (NapB)
PF03927	NapD protein
PF06796	Periplasmic nitrate reductase protein NapE
PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
PF10505	NMDA receptor-regulated gene protein 2 C-terminus
PF12569	NMDA receptor-regulated protein 1
PF03059	Nicotianamine synthase protein
PF09797	N-acetyltransferase B complex (NatB) non catalytic subunit
PF01235	Sodium:alanine symporter family
PF01699	Sodium/calcium exchanger protein
PF03553	Na+/H+ antiporter family
PF06965	Na+/H+ antiporter 1
PF13726	Na+-H+ antiporter family
PF00999	Sodium/hydrogen exchanger family
PF00287	Sodium / potassium ATPase beta chain
PF02690	Na+/Pi-cotransporter
PF00939	Sodium:sulfate symporter transmembrane region
PF06512	Sodium ion transport-associated
PF04159	NB glycoprotein
PF00931	NB-ARC domain
PF15492	Neuroblastoma-amplified sequence, N terminal
PF10444	Nbl1 / Borealin N terminal
PF04485	Phycobilisome degradation protein nblA
PF08537	Fungal Nap binding protein NBP1
PF08599	DNA damage repair protein Nbs1
PF08637	ATP synthase regulation protein NCA2
PF04904	NAB conserved region 1 (NCD1)
PF04905	NAB conserved region 2 (NCD2)
PF07562	Nine Cysteines Domain of family 3 GPCR
PF09735	Membrane-associated apoptosis protein
PF15246	Nck-associated protein 5, Peripheral clock protein
PF15065	Lysosomal transcription factor, NCU-G1
PF09531	Nucleoporin protein Ndc1-Nup
PF03801	HEC/Ndc80p family
PF10716	NADH dehydrogenase transmembrane subunit
PF10664	Cyanobacterial and plastid NDH-1 subunit M
PF11909	NADH-quinone oxidoreductase cyanobacterial subunit N
PF11910	Cyanobacterial and plant NDH-1 subunit O
PF00334	Nucleoside diphosphate kinase
PF03096	Ndr family
PF05224	NDT80 / PhoG like DNA-binding  family
PF05071	NADH ubiquinone oxidoreductase subunit NDUFA12
PF10249	NADH-ubiquinone oxidoreductase subunit 10
PF10200	NADH:ubiquinone oxidoreductase, NDUFS5-15kDa
PF08122	NADH-ubiquinone oxidoreductase B12 subunit family
PF07225	NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4)
PF09781	NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit
PF09782	NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit
PF05676	NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)
PF05821	NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8)
PF06374	NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2)
PF05031	Iron Transport-associated domain
PF12312	Nepovirus subgroup A polyprotein
PF00880	Nebulin repeat
PF10379	Virulence protein nec1
PF10187	N-terminal domain of NEFA-interacting nuclear protein NIP30
PF09292	Endonuclease VIII-like 1, DNA bind
PF05567	Neisseria PilC beta-propeller domain
PF05616	Neisseria meningitidis TspB protein
PF14496	C-terminal novel E3 ligase, LRR-interacting
PF11577	NF-kappa-B essential modulator NEMO
PF00960	Neocarzinostatin family
PF06583	Neogenin C-terminus
PF10167	Uncharacterised conserved protein
PF03391	Nepovirus coat protein, central domain
PF03688	Nepovirus coat protein, C-terminal domain
PF03689	Nepovirus coat protein, N-terminal domain
PF08378	Nuclease-related domain
PF06390	Neuroendocrine-specific golgi protein P55 (NESP55)
PF14044	NETI protein
PF03102	NeuB family
PF06413	Neugrin
PF00064	Neuraminidase
PF07177	Neuralized
PF06567	Neural chondroitin sulphate proteoglycan cytoplasmic domain
PF02158	Neuregulin family
PF14927	Neurensin
PF06312	Neurexophilin
PF05536	Neurochondrin
PF03823	Neurokinin B
PF06614	Neuromodulin
PF10580	Gap junction protein N-terminal region
PF07327	Neuroparsin
PF14993	Neuropeptide S precursor protein
PF15161	Neuropeptide-like
PF12533	Neuronal helix-loop-helix transcription factor
PF02931	Neurotransmitter-gated ion-channel ligand binding domain
PF02932	Neurotransmitter-gated ion-channel transmembrane region
PF08628	Sorting nexin C terminal
PF01957	NfeD-like C-terminal, partner-binding
PF10524	Nuclear factor I protein pre-N-terminus
PF13283	Bacteriophage N adsorption protein A C-term
PF14465	NFRKB Winged Helix-like
PF08712	Scaffold protein Nfu/NifU N terminal
PF00243	Nerve growth factor family
PF09015	NgoMIV restriction enzyme
PF08153	NGP1NT (NUC091) domain
PF08619	Alkali metal cation/H+ antiporter Nha1 C terminus
PF06450	Bacterial Na+/H+ antiporter B (NhaB)
PF02979	Nitrile hydratase, alpha chain
PF02211	Nitrile hydratase beta subunit
PF01436	NHL repeat
PF08788	NHR2 domain like
PF15273	NHS-like
PF04097	Nup93/Nic96
PF05450	Nicastrin
PF07406	NICE-3 protein
PF03824	High-affinity nickel-transport protein
PF07292	Nmi/IFP 35 domain (NID)
PF06119	Nidogen-like
PF03031	NLI interacting factor-like phosphatase
PF07862	Nitrogen fixation protein of unknown function
PF01784	NIF3 (NGG1p interacting factor 3)
PF00374	Nickel-dependent hydrogenase
PF14720	NiFe/NiFeSe hydrogenase small subunit C-terminal
PF04891	NifQ
PF06988	NifT/FixU protein
PF01106	NifU-like domain
PF01592	NifU-like N terminal domain
PF03206	Nitrogen fixation protein NifW
PF04319	NifZ domain
PF12667	NigD-like protein
PF08753	NikR C terminal nickel binding domain
PF09383	NIL domain
PF05772	NinB protein
PF05322	NINE Protein
PF05810	NinF protein
PF05766	Bacteriophage Lambda NinG protein
PF04923	Ninjurin
PF12830	Sister chromatid cohesion C-terminus
PF07978	NIPSNAP
PF08995	Necrosis inducing protein-1
PF01077	Nitrite and sulphite reductase 4Fe-4S domain
PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
PF08376	Nitrate and nitrite sensing
PF02613	Nitrate reductase delta subunit
PF02665	Nitrate reductase gamma subunit
PF02087	Nitrophorin
PF00881	Nitroreductase family
PF02579	Dinitrogenase iron-molybdenum cofactor
PF14710	Respiratory nitrate reductase alpha N-terminal
PF09655	Conserved nitrate reductase-associated protein (Nitr_red_assoc)
PF14711	Respiratory nitrate reductase beta C-terminal
PF10126	Uncharacterized protein, homolog of nitrogen regulatory protein PII
PF01292	Prokaryotic cytochrome b561
PF15053	Mjmu-R1-like protein family
PF05640	Na,K-Atpase Interacting protein
PF10364	Putative capsular polysaccharide synthesis protein
PF05211	Neuraminyllactose-binding hemagglutinin precursor (NLBH)
PF08154	NLE (NUC135) domain
PF00877	NlpC/P60 family
PF04170	NlpE N-terminal domain
PF12402	NocA-like zinc-finger protein 1
PF04981	NMD3 family
PF10565	N-methyl D-aspartate receptor 2B3 C-terminus
PF04973	Nicotinamide mononucleotide transporter
PF03060	Nitronate monooxygenase
PF05368	NmrA-like family
PF01233	Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
PF09084	NMT1/THI5 like
PF13379	NMT1-like family
PF02799	Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain
PF02070	Neuromedin U
PF03980	Nnf1
PF01234	NNMT/PNMT/TEMT family
PF05940	NnrS protein
PF07298	NnrU protein
PF06524	NOA36 protein
PF08772	Nin one binding (NOB1) Zn-ribbon like
PF03715	Noc2p family
PF07540	Nucleolar complex-associated protein
PF06816	NOTCH protein
PF02474	Nodulation protein A (NodA)
PF07684	NOTCH protein
PF05401	Nodulation protein S (NodS)
PF02451	Nodulin
PF06813	Nodulin-like
PF07127	Late nodulin protein
PF05830	Nodulation protein Z (NodZ)
PF07806	Nodule-specific GRP repeat
PF12308	Neurogenesis glycoprotein
PF06858	Nucleolar GTP-binding protein 1 (NOG1)
PF08155	NOGCT (NUC087) domain
PF05806	Noggin
PF01189	NOL1/NOP2/sun family
PF13636	pre-rRNA processing and ribosome biogenesis
PF06635	Nodulation protein NolV
PF05819	NolX protein
PF01798	Putative snoRNA binding domain
PF04135	Nucleolar RNA-binding protein, Nop10p family
PF04147	Nop14-like family
PF09420	Ribosome biogenesis protein Nop16
PF09805	Nucleolar protein 12 (25kDa)
PF05997	Nucleolar protein,Nop52
PF07767	Nop53 (60S ribosomal biogenesis)
PF08156	NOP5NT (NUC127) domain
PF08075	NOPS (NUC059) domain
PF05048	Periplasmic copper-binding protein (NosD)
PF08060	NOSIC (NUC001) domain
PF05573	NosL
PF04054	CCR4-Not complex component, Not1
PF04153	NOT2 / NOT3 / NOT5 family
PF04065	Not1 N-terminal domain, CCR4-Not complex component
PF00066	LNR domain
PF12183	Restriction endonuclease NotI
PF05554	Viral hemorrhagic septicemia virus non-virion protein
PF08744	Plant transcription factor NOZZLE
PF02898	Nitric oxide synthase, oxygenase domain
PF11733	Non-capsid protein NP1
PF11707	Ribosome 60S biogenesis N-terminal
PF15180	Neuropeptides B and W
PF08305	NPCBM/NEW2 domain
PF10633	NPCBM-associated, NEW3 domain of alpha-galactosidase
PF08058	Nuclear pore complex component
PF06809	Neural proliferation differentiation control-1 protein (NPDC1)
PF15085	Neuropeptide FF
PF03000	NPH3 family
PF08469	Nucleoside triphosphatase I C-terminal
PF06409	Nuclear pore complex interacting protein (NPIP)
PF05021	NPL4 family
PF08384	Pro-opiomelanocortin, N-terminal region
PF05630	Necrosis inducing protein (NPP1)
PF07391	NPR nonapeptide repeat (2 copies)
PF12313	NPR1/NIM1 like defence protein C terminal
PF06218	Nitrogen permease regulator 2
PF03666	Nitrogen Permease regulator of amino acid transport activity 3
PF05531	Nucleopolyhedrovirus P10 protein
PF12622	mRNA biogenesis factor
PF03116	NQR2, RnfD, RnfE family
PF05896	Na(+)-translocating NADH-quinone reductase subunit A (NQRA)
PF11973	NQRA C-terminal domain
PF01566	Natural resistance-associated macrophage protein
PF03813	Nrap protein
PF13597	Anaerobic ribonucleoside-triphosphate reductase
PF05742	NRDE protein
PF08424	NRDE-2, necessary for RNA interference
PF10492	Nrf1 activator activation site binding domain
PF10491	NLS-binding and DNA-binding and dimerisation domains of Nrf1
PF03916	Polysulphide reductase, NrfD
PF14589	Polysulfide reductase
PF15056	Neuritin protein family
PF12753	Nuclear pore complex subunit Nro1
PF08415	Nonribosomal peptide synthase
PF14046	Nuclear receptor repeat
PF02723	Non-structural protein NS3/Small envelope protein E
PF15412	Binding domain of Nse4/EID3 to Nse3-MAGE
PF08743	Nse4 C-terminal
PF08691	DNA repair proteins Nse5 and Nse6
PF02071	Aromatic-di-Alanine (AdAR) repeat
PF11501	Non structural protein Nsp1
PF09401	RNA synthesis protein NSP10
PF06471	NSP11
PF06460	Coronavirus NSP13
PF05064	Nsp1-like C-terminal region
PF14757	Immunogenic region of nsp2 protein of arterivirus polyprotein
PF14758	Non-essential region of nsp2 of arterivirus polyprotein
PF12124	Coronavirus polyprotein cleavage domain
PF08716	nsp7 replicase
PF08717	nsp8 replicase
PF08710	nsp9 replicase
PF11073	Rift valley fever virus non structural protein (NSs) like
PF13945	Salt tolerance down-regulator
PF10358	N-terminal C2 in EEIG1 and EHBP1 proteins
PF06941	5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
PF03146	Agrin NtA domain
PF08780	Nucleotidyltransferase substrate binding protein like
PF13006	Insertion element 4 transposase N-terminal
PF14540	Nucleotidyltransferase-like
PF02136	Nuclear transport factor 2 (NTF2) domain
PF08470	Nontoxic nonhaemagglutinin C-terminal
PF03266	NTPase
PF01931	Protein of unknown function DUF84
PF11602	ATPase P4 of dsRNA bacteriophage phi-12
PF00483	Nucleotidyl transferase
PF01909	Nucleotidyltransferase domain
PF12804	MobA-like NTP transferase domain
PF13562	Sugar nucleotidyl transferase
PF14907	Uncharacterised nucleotidyltransferase
PF01759	UNC-6/NTR/C345C module
PF15458	Nineteen complex-related protein 2
PF15447	N-terminal segments of PfEMP1
PF15448	N-terminal segments of P. falciparum erythrocyte membrane protein
PF09764	N-terminal glutamine amidase
PF09340	Histone acetyltransferase subunit NuA4
PF10127	Predicted nucleotidyltransferase
PF08157	NUC129 domain
PF08158	NUC130/3NT domain
PF08159	NUC153 domain
PF08161	NUC173 domain
PF08163	NUC194 domain
PF08166	NUC202 domain
PF08168	NUC205 domain
PF08133	Anticodon nuclease activator family
PF13820	Putative nucleic acid-binding region
PF11030	Nucleocapsid protein N
PF11128	Plant viral coat protein nucleocapsid
PF03066	Nucleoplasmin
PF04096	Nucleoporin autopeptidase
PF03177	Non-repetitive/WGA-negative nucleoporin C-terminal
PF13634	Nucleoporin FG repeat region
PF08801	Nup133 N terminal like
PF07575	Nup85 Nucleoporin
PF01733	Nucleoside transporter
PF07662	Na+ dependent nucleoside transporter C-terminus
PF01773	Na+ dependent nucleoside transporter N-terminus
PF03407	Nucleotide-diphospho-sugar transferase
PF06256	Nucleopolyhedrovirus LEF-12 protein
PF07267	Nucleopolyhedrovirus capsid protein P87
PF05014	Nucleoside 2-deoxyribosyltransferase
PF03825	Nucleoside H+ symporter
PF14448	Nuclease N terminal
PF11825	Nuclear/hormone receptor activator site AF-1
PF08815	Nuclear receptor coactivator
PF04142	Nucleotide-sugar transporter
PF14050	N-terminal conserved domain of Nudc.
PF04880	NUDE protein, C-terminal conserved region
PF00293	NUDIX domain
PF09296	NADH pyrophosphatase-like rudimentary NUDIX domain
PF13869	Nucleotide hydrolase
PF14815	NUDIX domain
PF12535	Hydrolase of X-linked nucleoside diphosphate N terminal
PF14803	Nudix N-terminal
PF03800	Nuf2 family
PF10453	Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)
PF15293	Nuclear fragile X mental retardation-interacting protein 2
PF07924	Nuclease A inhibitor-like protein
PF06311	NUMB domain
PF07453	NUMOD1 domain
PF07460	NUMOD3 motif (2 copies)
PF07463	NUMOD4 motif
PF06516	Purine nucleoside permease (NUP)
PF08604	Nucleoporin Nup153-like
PF11715	Nucleoporin Nup120/160
PF10487	Nucleoporin subcomplex protein binding to Pom34
PF05172	Nup53/35/40-type RNA recognition motif
PF14605	Nup53/35/40-type RNA recognition motif
PF08911	NUP50 (Nucleoporin 50 kDa)
PF13874	Nucleoporin complex subunit 54
PF04121	Nuclear pore protein 84 / 107
PF10168	Nuclear pore component
PF12110	Nuclear protein 96
PF10599	Retro-transposon transporting motif
PF09376	NurA domain
PF08529	NusA N-terminal domain
PF01029	NusB family
PF02357	Transcription termination factor nusG
PF12882	NUT protein C terminal
PF12881	NUT protein N terminus
PF14055	NVEALA protein
PF15452	Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter
PF15439	Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter
PF15015	Spermatogenesis-associated, N-terminal
PF14772	Sperm tail
PF14775	Sperm tail C-terminal domain
PF01936	NYN domain
PF05991	YacP-like NYN domain
PF09426	Vacuolar R-SNARE Nyv1 N terminal
PF14736	Protein N-terminal asparagine amidohydrolase
PF07963	Prokaryotic N-terminal methylation motif
PF13544	Type IV pilin N-term methylation site GFxxxE
PF13633	Prokaryotic N-terminal methylation site
PF12912	NLPC_P60 stabilising domain, N term
PF14296	O-antigen polysaccharide polymerase Wzy
PF13425	O-antigen ligase like membrane protein
PF10250	GDP-fucose protein O-fucosyltransferase
PF03977	Na+-transporting oxaloacetate decarboxylase beta subunit
PF04277	Oxaloacetate decarboxylase, gamma chain
PF14941	Transcriptional regulator, Out at first
PF04225	Opacity-associated protein A LysM-like domain
PF08525	Opacity-associated protein A N-terminal motif
PF03826	OAR domain
PF10421	2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus
PF03137	Organic Anion Transporter Polypeptide (OATP) family
PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
PF08206	Ribonuclease B OB domain
PF15506	OCC1 family
PF07303	Occludin homology domain
PF02423	Ornithine cyclodeaminase/mu-crystallin family
PF07051	Ovarian carcinoma immunoreactive antigen (OCIA)
PF05005	Janus/Ocnus family (Ocnus)
PF08684	DNA mimic ocr
PF03373	Octapeptide repeat
PF02317	NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain
PF02101	Ocular albinism type 1 protein
PF15424	Odontogenic ameloblast-associated family
PF02100	Ornithine decarboxylase antizyme
PF14778	Olfactory receptor 4-like
PF10717	Occlusion-derived virus envelope protein ODV-E18
PF02321	Outer membrane efflux protein
PF02159	Oestrogen receptor
PF10637	Oxoglutarate and iron-dependent oxygenase degradation C-term
PF04680	Opioid growth factor receptor repeat
PF04664	Opioid growth factor receptor (OGFr) conserved region
PF07934	8-oxoguanine DNA glycosylase, N-terminal domain
PF04606	Ogr/Delta-like zinc finger
PF14418	OST-HTH Associated domain
PF09349	OHCU decarboxylase
PF01276	Orn/Lys/Arg decarboxylase, major domain
PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
PF09253	Pollen allergen ole e 6
PF01277	Oleosin
PF02191	Olfactomedin-like domain
PF06554	Olfactory marker protein
PF02410	Oligomerisation domain
PF08352	Oligopeptide/dipeptide transporter, C-terminal region
PF13376	Bacteriocin-protection, YdeI or OmpD-Associated
PF06357	Omega-atracotoxin
PF07764	Omega Transcriptional Repressor
PF11551	Outer membrane protein Omp28
PF00691	OmpA family
PF01389	OmpA-like transmembrane domain
PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
PF03938	Outer membrane protein (OmpH-like)
PF01278	Omptin family
PF03922	OmpW family
PF13505	Outer membrane protein beta-barrel domain
PF13568	Outer membrane protein beta-barrel domain
PF14905	Outer membrane protein beta-barrel family
PF03532	OMS28 porin
PF07047	Optic atrophy 3 protein (OPA3)
PF02462	Opacity family porin protein
PF07239	Outer membrane protein OpcA
PF10128	Glucose-6-phosphate dehydrogenase subunit
PF10129	OpgC protein
PF08618	Transcription factor Opi1
PF01160	Vertebrate endogenous opioids neuropeptide
PF12911	N-terminal TM domain of oligopeptide transport permease C
PF04966	Carbohydrate-selective porin, OprB family
PF03573	outer membrane porin, OprD family
PF05736	OprF membrane domain
PF03169	OPT oligopeptide transporter protein
PF11078	Optomotor-blind protein N-terminal region
PF04069	Substrate binding domain of ABC-type glycine betaine transport system
PF09463	Opy2 protein
PF08035	Opioids neuropeptide
PF07856	Mediator of CRAC channel activity
PF01718	Orbivirus non-structural protein NS1, or hydrophobic tubular protein
PF01616	Orbivirus NS3
PF05788	Orbivirus RNA-dependent RNA polymerase (VP1)
PF00898	Orbivirus outer capsid protein VP2
PF01700	Orbivirus VP3 (T2) protein
PF05059	Orbivirus VP4 core protein
PF00901	Orbivirus outer capsid protein VP5
PF01516	Orbivirus helicase VP6
PF00897	Orbivirus inner capsid protein VP7
PF04084	Origin recognition complex subunit 2
PF07034	Origin recognition complex (ORC) subunit 3 N-terminus
PF14629	Origin recognition complex (ORC) subunit 4 C-terminus
PF14630	Origin recognition complex (ORC) subunit 5 C-terminus
PF05460	Origin recognition complex subunit 6 (ORC6)
PF02072	Prepro-orexin
PF03827	Orexin receptor type 2
PF10549	ORF11CD3 domain
PF10552	ORF6C domain
PF10543	ORF6N domain
PF01385	Probable transposase
PF07282	Putative transposase DNA-binding domain
PF09482	Bacterial type III secretion apparatus protein (OrgA_MxiK)
PF04061	ORMDL family
PF02088	Ornatin
PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
PF02250	35kD major secreted virus protein
PF05950	Orthopoxvirus A36R protein
PF06517	Orthopoxvirus A43R protein
PF06334	Orthopoxvirus A47 protein
PF06489	Orthopoxvirus A49R protein
PF06193	Orthopoxvirus A5L protein-like
PF07033	Orthopoxvirus B11R protein
PF07020	Orthopoxvirus C10L protein
PF06076	Orthopoxvirus F14 protein
PF06601	Orthopoxvirus F6 protein
PF05813	Orthopoxvirus F7 protein
PF05886	Orthopoxvirus F8 protein
PF07204	Orthoreovirus membrane fusion protein p10
PF07272	Orthoreovirus P17 protein
PF03392	Insect pheromone-binding family, A10/OS-D
PF00213	ATP synthase delta (OSCP) subunit
PF10188	Organic solute transport protein 1
PF02566	OsmC-like protein
PF08946	Osmosensory transporter coiled coil
PF09488	Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth)
PF03207	Borrelia outer surface protein D (OspD)
PF02471	Borrelia outer surface protein E
PF12202	Oxidative-stress-responsive kinase 1 C terminal
PF12872	OST-HTH/LOTUS domain
PF04756	OST3 / OST6 family
PF10215	Oligosaccaryltransferase
PF03968	OstA-like protein
PF13100	OstA-like protein
PF04453	Organic solvent tolerance protein
PF15048	Organic solute transporter subunit beta protein
PF00865	Osteopontin
PF07175	Osteoregulin
PF09777	Osteopetrosis-associated transmembrane protein 1 precursor
PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
PF03189	Otopetrin
PF15182	Otospiralin
PF14441	OTT_1508-like deaminase
PF02338	OTU-like cysteine protease
PF04844	Transcriptional repressor, ovate
PF09791	Oxidoreductase-like protein, N-terminal
PF00724	NADH:flavin oxidoreductase / NADH oxidase family
PF00174	Oxidoreductase molybdopterin binding domain
PF00148	Nitrogenase component 1 type Oxidoreductase
PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
PF01010	NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus
PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
PF00499	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
PF00507	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
PF01059	NADH-ubiquinone oxidoreductase chain 4, amino terminus
PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
PF12573	2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal
PF09859	Oxygenase, catalysing oxidative methylation of damaged DNA
PF01237	Oxysterol-binding protein
PF08635	Putative oxidoreductase C terminal
PF00543	Nitrogen regulatory protein P-II
PF04275	Phosphomevalonate kinase
PF12669	Virus attachment protein p12 family
PF08062	P120R (NUC006) repeat
PF12233	Human adult T cell leukemia/lymphoma virus protein
PF04699	ARP2/3 complex 16 kDa subunit (p16-Arc)
PF07392	Cyclin-dependent kinase inhibitor 2a p19Arf N-terminus
PF07194	P2 response regulator binding domain
PF04062	ARP2/3 complex ARPC3 (21 kDa) subunit
PF10548	P22AR C-terminal domain
PF10547	P22_AR N-terminal domain
PF11651	P22 coat protein - gene protein 5
PF14549	DNA-binding transcriptional regulator Cro
PF11650	P22 tail accessory factor
PF05517	p25-alpha
PF00864	ATP P2X receptor
PF06891	P2 phage tail completion protein R (GpR)
PF07390	Mycoplasma P30 protein
PF06581	Mad1 and Cdc20-bound-Mad2 binding
PF15302	P33 mono-oxygenase
PF04045	Arp2/3 complex, 34 kD subunit p34-Arc
PF02331	Apoptosis preventing protein
PF08727	Poliovirus 3A protein like
PF00067	Cytochrome P450
PF08944	NADPH oxidase subunit p47Phox, C terminal domain
PF08336	Prolyl 4-Hydroxylase alpha-subunit, N-terminal region
PF12409	P5-type ATPase cation transporter
PF00870	P53 DNA-binding domain
PF14936	Tumour protein p53-inducible protein 11
PF11619	Transcription factor P53 - C terminal domain
PF08563	P53 transactivation motif
PF07710	P53 tetramerisation motif
PF14748	Pyrroline-5-carboxylate reductase dimerisation
PF10546	P63C domain
PF08061	P68HR (NUC004) repeat
PF02225	PA domain
PF07472	Fucose-binding lectin II (PA-IIL)
PF07828	PA-IL-like protein
PF07691	PA14 domain
PF10528	GLEYA domain
PF04636	PA26 p53-induced protein (sestrin)
PF02251	Proteasome activator pa28 alpha subunit
PF02252	Proteasome activator pa28 beta subunit
PF05138	Phenylacetic acid catabolic protein
PF06243	Phenylacetic acid degradation B
PF05488	PAAR motif
PF14738	Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
PF07848	PaaX-like protein
PF08223	PaaX-like protein C-terminal domain
PF13969	Pab87 octamerisation domain
PF00658	Poly-adenylate binding protein, unique domain
PF09754	PAC2 family
PF05375	Pacifastin inhibitor (LCMII)
PF14000	DNA packaging protein FI
PF10254	PACS-1 cytosolic sorting protein
PF10495	Pericentrin-AKAP-450 domain of centrosomal targeting protein
PF03068	Protein-arginine deiminase (PAD)
PF03551	Transcriptional regulator PadR-like family
PF08063	PADR1 (NUC008) domain
PF08527	Protein-arginine deiminase (PAD) middle domain
PF08526	Protein-arginine deiminase (PAD) N-terminal domain
PF04371	Porphyromonas-type peptidyl-arginine deiminase
PF03283	Pectinacetylesterase
PF03403	Platelet-activating factor acetylhydrolase, isoform II
PF03985	Paf1
PF10255	RNA polymerase I-associated factor PAF67
PF15347	Phosphoprotein associated with glycosphingolipid-enriched
PF15284	Phage-encoded virulence factor
PF09411	Lipid A 3-O-deacylase (PagL)
PF07017	Antimicrobial peptide resistance and lipid A acylation protein PagP
PF02671	Paired amphipathic helix repeat
PF09699	Doubled CXXCH motif (Paired_CXXCH_1)
PF08316	Pal1 cell morphology protein
PF08733	PalH/RIM21
PF02089	Palmitoyl protein thioesterase
PF00291	Pyridoxal-phosphate dependent enzyme
PF03656	Pam16
PF08566	Mitochondrial import protein Pam17
PF07145	Ataxin-2 C-terminal region
PF02569	Pantoate-beta-alanine ligase
PF02548	Ketopantoate hydroxymethyltransferase
PF00024	PAN domain
PF08276	PAN-like domain
PF08277	PAN-like domain
PF14295	PAN domain
PF03309	Type III pantothenate kinase
PF08417	Pheophorbide a oxygenase
PF08601	Transcription factor PAP1
PF01569	PAP2 superfamily
PF14378	PAP2 superfamily
PF14360	PAP2 superfamily C-terminal
PF04795	PAPA-1-like conserved region
PF03333	Adhesin biosynthesis transcription regulatory protein
PF13953	PapC C-terminal domain
PF13954	PapC N-terminal domain
PF14874	Flagellar-associated PapD-like
PF02753	Pili assembly chaperone PapD, C-terminal domain
PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
PF03628	PapG chaperone-binding domain
PF03627	PapG carbohydrate binding domain
PF03025	Papillomavirus E5
PF05776	Papillomavirus E5A protein
PF14855	Pilus-assembly fibrillin subunit, chaperone
PF02380	T-antigen specific domain
PF01507	Phosphoadenosine phosphosulfate reductase family
PF03828	Cid1 family poly A polymerase
PF04928	Poly(A) polymerase central domain
PF02711	E4 protein
PF04755	PAP_fibrillin
PF06864	Pilin accessory protein (PilO)
PF04926	Poly(A) polymerase predicted RNA binding domain
PF06521	PAR1 protein
PF10609	ParA/MinD ATPase like
PF03285	Paralemmin
PF01508	Paramecium surface antigen domain
PF01692	Paramyxovirus non-structural protein c
PF00973	Paramyxovirus nucleocapsid protein
PF02725	Non-structural protein C
PF01806	Paramyxovirinae P phosphoprotein C-terminal region
PF14320	Phosphoprotein P region PCT disordered
PF13825	Paramyxovirus structural protein V/P N-terminus
PF03210	Paramyxovirus P/V phosphoprotein C-terminal
PF01279	Parathyroid hormone family
PF08775	ParB family
PF02195	ParB-like nuclease domain
PF08857	Putative ParB-like nuclease
PF10274	Parkin co-regulated protein
PF09386	Antitoxin ParD
PF07425	Pardaxin
PF06344	Parechovirus Genome-linked protein
PF05942	Archaeal PaREP1/PaREP8 family
PF07903	PaRep2a protein
PF07775	PaRep2b protein
PF09274	ParG
PF05028	Poly (ADP-ribose) glycohydrolase (PARG)
PF00644	Poly(ADP-ribose) polymerase catalytic domain
PF02877	Poly(ADP-ribose) polymerase, regulatory domain
PF01358	Poly A polymerase regulatory subunit
PF00740	Parvovirus coat protein VP2
PF08398	Parvovirus coat protein VP1
PF01057	Parvovirus non-structural protein NS1
PF00989	PAS fold
PF03793	PASTA domain
PF13596	PAS domain
PF14598	PAS domain
PF08446	PAS fold
PF08447	PAS fold
PF08448	PAS fold
PF07310	PAS domain
PF08348	YheO-like PAS domain
PF12860	PAS fold
PF13188	PAS domain
PF13426	PAS domain
PF09016	Pas factor saposin fold
PF09770	Topoisomerase II-associated protein PAT1
PF01734	Patatin-like phospholipase
PF02460	Patched family
PF09593	Beta-satellite pathogenicity beta C1 protein
PF00292	'Paired box' domain
PF12403	Paired-box protein 2 C terminal
PF12360	Paired box protein 7
PF03535	Paxillin family
PF15364	PAXIP1-associated-protein-1 C term PTIP binding protein
PF05625	PAXNEB protein
PF02170	PAZ domain
PF12212	Piwi/Argonaute/Zwille siRNA-binding domain
PF05870	Phenolic acid decarboxylase (PAD)
PF00564	PB1 domain
PF11986	Influenza A Proapoptotic protein
PF05874	Pheromone biosynthesis activating neuropeptide (PBAN)
PF03792	PBC domain
PF08789	PBCV-specific basic adaptor domain
PF00786	P21-Rho-binding domain
PF01161	Phosphatidylethanolamine-binding protein
PF14889	Penicillin-binding protein Tp47 domain a
PF14888	Penicillin-binding protein Tp47 domain C
PF14812	Transmembrane domain of transglycosylase PBP1 at N-terminal
PF07943	Penicillin-binding protein 5, C-terminal domain
PF03717	Penicillin-binding Protein dimerisation domain
PF01395	PBP/GOBP family
PF12727	PBP superfamily domain
PF12849	PBP superfamily domain
PF07222	Proacrosin binding protein sp32
PF00427	Phycobilisome Linker polypeptide
PF13839	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
PF02229	Transcriptional Coactivator p15 (PC4)
PF06466	PCAF (P300/CBP-associated factor) N-terminal domain
PF09341	Transcription factor Pcc1
PF12391	Protocatechuate 3,4-dioxygenase beta subunit N terminal
PF07418	Acidic phosphoprotein precursor PCEMA1
PF09461	Phytotoxin PcF protein
PF14284	PcfJ-like protein
PF14058	PcfK-like protein
PF01399	PCI domain
PF12237	Phosphorylated CTD interacting factor 1 WW domain
PF10075	COP9 signalosome, subunit CSN8
PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
PF02747	Proliferating cell nuclear antigen, C-terminal domain
PF00705	Proliferating cell nuclear antigen, N-terminal domain
PF15473	PEST, proteolytic signal-containing nuclear protein family
PF02429	Peridinin-chlorophyll A binding protein
PF08369	Proto-chlorophyllide reductase 57 kD subunit
PF01884	PcrB family
PF03462	PCRF domain
PF13798	Protein of unknown function with PCYCGC motif
PF01851	Proteasome/cyclosome repeat
PF09310	POU domain, class 2, associating factor 1
PF07676	WD40-like Beta Propeller Repeat
PF14756	Peptidase_C33-associated domain
PF04194	Programmed cell death protein 2, C-terminal putative domain
PF07147	Mitochondrial 28S ribosomal protein S30 (PDCD9)
PF12705	PD-(D/E)XK nuclease superfamily
PF12784	PD-(D/E)XK nuclease family transposase
PF13366	PD-(D/E)XK nuclease superfamily
PF14281	PD-(D/E)XK nuclease superfamily
PF11645	PD-(D/E)XK endonuclease
PF04868	Retinal cGMP phosphodiesterase, gamma subunit
PF08629	PDE8 phosphodiesterase
PF00233	3'5'-cyclic nucleotide phosphodiesterase
PF02112	cAMP phosphodiesterases class-II
PF08499	3'5'-cyclic nucleotide phosphodiesterase N-terminal
PF00341	PDGF/VEGF domain
PF04692	Platelet-derived growth factor, N terminal region
PF13190	PDGLE domain
PF02153	Prephenate dehydrogenase
PF08370	Plant PDR ABC transporter associated
PF06422	CDR ABC transporter
PF00800	Prephenate dehydratase
PF06130	Propanediol utilisation protein PduL
PF10662	Ethanolamine utilisation - propanediol utilisation
PF04166	Pyridoxal phosphate biosynthetic protein PdxA
PF03740	Pyridoxal phosphate biosynthesis protein PdxJ
PF00595	PDZ domain (Also known as DHR or GLGF)
PF12812	PDZ-like domain
PF13180	PDZ domain
PF10600	PDZ-associated domain of NMDA receptors
PF00934	PE family
PF08237	PE-PPE domain
PF08111	Pea-VEAacid family
PF05278	Arabidopsis phospholipase-like protein (PEARLI 4)
PF05041	Pecanex protein (C-terminus)
PF03211	Pectate lyase
PF14583	Oligogalacturonate lyase
PF06917	Periplasmic pectate lyase
PF12708	Pectate lyase superfamily protein
PF01095	Pectinesterase
PF09492	Pectic acid lyase
PF00544	Pectate lyase
PF04431	Pectate lyase, N terminus
PF08182	Pedibin/Hym-346 family
PF08308	PEGA domain
PF07623	Protein of unknown function (DUF1584)
PF15275	PEHE domain
PF04710	Pellino
PF15608	PELOTA RNA binding domain
PF02452	PemK-like protein
PF04191	Phospholipid methyltransferase
PF10251	Presenilin enhancer-2 subunit of gamma secretase
PF05927	Penaeidin
PF03965	Penicillinase repressor
PF01804	Penicillin amidase
PF00805	Pentapeptide repeats (8 copies)
PF01469	Pentapeptide repeats (8 copies)
PF13576	Pentapeptide repeats (9 copies)
PF13599	Pentapeptide repeats (9 copies)
PF00354	Pentaxin family
PF05524	PEP-utilising enzyme, N-terminal
PF00391	PEP-utilising enzyme, mobile domain
PF02896	PEP-utilising enzyme, TIM barrel domain
PF05131	Pep3/Vps18/deep orange family
PF00311	Phosphoenolpyruvate carboxylase
PF14010	Phosphoenolpyruvate carboxylase
PF00821	Phosphoenolpyruvate carboxykinase
PF01293	Phosphoenolpyruvate carboxykinase
PF06394	Pepsin inhibitor-3-like repeated domain
PF03413	Peptidase propeptide and YPEB domain
PF13670	Peptidase propeptide and YPEB domain
PF03929	PepSY-associated TM helix
PF13172	PepSY-associated TM helix
PF13703	PepSY-associated TM helix
PF13706	PepSY-associated TM helix
PF05380	Pao retrotransposon peptidase
PF03566	Peptidase family A21
PF04258	Signal peptide peptidase
PF01478	Type IV leader peptidase family
PF03418	Germination protease
PF12384	Ty3 transposon peptidase
PF12382	Retrotransposon peptidase
PF02160	Cauliflower mosaic virus peptidase (A3)
PF01828	Peptidase A4 family
PF01829	Peptidase A6 family
PF01252	Signal peptidase (SPase) II
PF00112	Papain family cysteine protease
PF01640	Peptidase C10 family
PF03415	Clostripain family
PF01088	Ubiquitin carboxyl-terminal hydrolase, family 1
PF01650	Peptidase C13 family
PF00656	Caspase domain
PF01470	Pyroglutamyl peptidase
PF01831	Peptidase C16 family
PF03051	Peptidase C1-like family
PF00648	Calpain family cysteine protease
PF05381	Tymovirus endopeptidase
PF05379	Carlavirus endopeptidase
PF03510	2C endopeptidase (C24) cysteine protease family
PF01364	Peptidase family C25
PF03785	Peptidase family C25, C terminal ig-like domain
PF07722	Peptidase C26
PF05407	Rubella virus endopeptidase
PF05408	Foot-and-mouth virus L-proteinase
PF00548	3C cysteine protease (picornain 3C)
PF05409	Coronavirus  endopeptidase C30
PF05410	Porcine arterivirus-type cysteine proteinase alpha
PF05411	Equine arteritis virus putative proteinase
PF05412	Equine arterivirus Nsp2-type cysteine proteinase
PF05413	Putative closterovirus papain-like endopeptidase
PF05415	Beet necrotic yellow vein furovirus-type papain-like endopeptidase
PF05416	Southampton virus-type processing peptidase
PF03412	Peptidase C39 family
PF13529	Peptidase_C39 like family
PF12381	Tungro spherical virus-type peptidase
PF00863	Peptidase family C4
PF05417	Hepatitis E cysteine protease
PF05533	Beet yellows virus-type papain-like endopeptidase C42
PF05543	Staphopain peptidase C47
PF02902	Ulp1 protease family, C-terminal catalytic domain
PF00770	Adenovirus endoprotease
PF03568	Peptidase family C50
PF05550	Pestivirus Npro endopeptidase C53
PF03416	Peptidase family C54
PF03290	Vaccinia virus I7 processing peptidase
PF03543	Yersinia/Haemophilus virulence surface antigen
PF00851	Helper component proteinase
PF12380	Gill-associated viral 3C-like peptidase
PF10275	Peptidase C65 Otubain
PF03577	Peptidase family C69
PF01830	Peptidase C7 family
PF12385	Papain-like cysteine protease AvrRpt2
PF12386	Pseudomurein endo-isopeptidase Pei
PF12387	Pestivirus NS2 peptidase
PF07910	Peptidase family C78
PF03569	Peptidase family C8
PF11713	Peptidase C80 family
PF01707	Peptidase family C9
PF06035	Bacterial transglutaminase-like cysteine proteinase BTLCP
PF05903	PPPDE putative peptidase domain
PF15499	Ubiquitin-specific peptidase-like, SUMO isopeptidase
PF11962	Peptidase_G2, IMC autoproteolytic cleavage domain
PF01433	Peptidase family M1
PF00413	Matrixin
PF08548	Peptidase M10 serralysin C terminal
PF05548	Gametolysin peptidase M11
PF01431	Peptidase family M13
PF05649	Peptidase family M13
PF00246	Zinc carboxypeptidase
PF01427	D-ala-D-ala dipeptidase
PF05951	Bacterial protein of unknown function (DUF882)
PF08291	Peptidase M15
PF13539	D-alanyl-D-alanine carboxypeptidase
PF00675	Insulinase (Peptidase family M16)
PF05193	Peptidase M16 inactive domain
PF00883	Cytosol aminopeptidase family, catalytic domain
PF02789	Cytosol aminopeptidase family, N-terminal domain
PF02127	Aminopeptidase I zinc metalloprotease (M18)
PF01244	Membrane dipeptidase (Peptidase family M19)
PF01401	Angiotensin-converting enzyme
PF01546	Peptidase family M20/M25/M40
PF00814	Glycoprotease family
PF01551	Peptidase family M23
PF00557	Metallopeptidase family M24
PF07580	M26 IgA1-specific Metallo-endopeptidase C-terminal region
PF05342	M26 IgA1-specific Metallo-endopeptidase N-terminal region
PF01742	Clostridial neurotoxin zinc protease
PF04389	Peptidase family M28
PF02073	Thermophilic metalloprotease (M29)
PF01432	Peptidase family M3
PF10460	Peptidase M30
PF02074	Carboxypeptidase Taq (M32) metallopeptidase
PF02102	Deuterolysin metalloprotease (M35) family
PF02128	Fungalysin metallopeptidase (M36)
PF08439	Oligopeptidase F
PF01447	Thermolysin metallopeptidase, catalytic domain
PF01434	Peptidase family M41
PF05343	M42 glutamyl aminopeptidase
PF05572	Pregnancy-associated plasma protein-A
PF03410	Protein G1
PF01435	Peptidase family M48
PF03571	Peptidase family M49
PF02868	Thermolysin metallopeptidase, alpha-helical domain
PF02163	Peptidase family M50
PF13398	Peptidase M50B-like
PF07998	Peptidase family M54
PF04951	D-aminopeptidase
PF05569	BlaR1 peptidase M56
PF12388	Dual-action HEIGH metallo-peptidase
PF05547	Immune inhibitor A peptidase M6
PF05299	M61 glycyl aminopeptidase
PF09471	IgA Peptidase M64
PF10462	Peptidase M66
PF02031	Streptomyces extracellular neutral proteinase (M7) family
PF12389	Camelysin metallo-endopeptidase
PF03411	Penicillin-insensitive murein endopeptidase
PF09375	Imelysin
PF09768	Peptidase M76 family
PF01457	Leishmanolysin
PF13678	NFkB-p65-degrading zinc protease
PF01752	Collagenase
PF06167	Glucose-regulated metallo-peptidase M90
PF14891	Effector protein
PF08453	Peptidase family M9 N-terminal
PF13485	Peptidase MA superfamily
PF00450	Serine carboxypeptidase
PF00768	D-alanyl-D-alanine carboxypeptidase
PF02113	D-Ala-D-Ala carboxypeptidase 3 (S13) family
PF02129	X-Pro dipeptidyl-peptidase (S15 family)
PF00716	Assemblin (Peptidase family S21)
PF00717	Peptidase S24-like
PF10502	Signal peptidase, peptidase S26
PF05577	Serine carboxypeptidase S28
PF02907	Hepatitis C virus NS3 protease
PF00944	Alphavirus core protein
PF01577	Potyvirus P1 protease
PF05578	Pestivirus NS3 polyprotein peptidase S31
PF05579	Equine arteritis virus serine endopeptidase S32
PF05576	PS-10 peptidase S37
PF02122	Peptidase S39
PF03572	Peptidase family S41
PF10459	Peptidase S46
PF03574	Peptidase family S48
PF01343	Peptidase family S49
PF08496	Peptidase family S49 N-terminal
PF03575	Peptidase family S51
PF05580	SpoIVB peptidase S55
PF03576	Peptidase family S58
PF02395	Immunoglobulin A1 protease
PF08192	Peptidase family S64
PF02016	LD-carboxypeptidase
PF10461	Peptidase S68
PF00949	Peptidase S7, Flavivirus NS3 serine protease
PF13884	Chaperone of endosialidase
PF13611	Serine peptidase of plant viral polyprotein, P1
PF00082	Subtilase family
PF07230	Bacteriophage T4-like capsid assembly protein (Gp20)
PF00326	Prolyl oligopeptidase family
PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
PF01136	Peptidase family U32
PF04586	Caudovirus prohead protease
PF14550	Putative phage protease XkdF
PF03419	Sporulation factor SpoIIGA
PF10464	Peptidase U40
PF10463	Peptidase U49
PF05582	YabG peptidase U57
PF03420	Prohead core protein protease
PF01195	Peptidyl-tRNA hydrolase
PF08530	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
PF09168	X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal
PF01327	Polypeptide deformylase
PF01562	Reprolysin family propeptide
PF13714	Phosphoenolpyruvate phosphomutase
PF04080	Per1-like
PF06590	PerB protein
PF06069	PerC transcriptional activator
PF07054	Pericardin like repeat
PF03036	Perilipin family
PF12114	Period protein 2/3C-terminal region
PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
PF01497	Periplasmic binding protein
PF13377	Periplasmic binding protein-like domain
PF13407	Periplasmic binding protein domain
PF13433	Periplasmic binding protein domain
PF13458	Periplasmic binding protein
PF08259	Periviscerokinin family
PF15629	Permuted single zf-CXXC unit
PF02405	Permease
PF00141	Peroxidase
PF01328	Peroxidase, family 2
PF04088	Peroxin 13, N-terminal region
PF12827	Peroxisomal biogenesis protein family
PF04882	Peroxin-3
PF03212	Pertactin
PF09275	Pertussis toxin S4 subunit
PF09276	Pertussis toxin S5 subunit
PF02917	Pertussis toxin, subunit 1
PF02918	Pertussis toxin, subunit 2 and 3, C-terminal domain
PF07149	Pes-10
PF06732	Pescadillo N-terminus
PF06297	PET Domain
PF05476	PET122
PF08634	Mitochondrial protein Pet127
PF10203	Cytochrome c oxidase assembly protein PET191
PF08692	Mitochondrial protein Pet20
PF02529	Cytochrome B6-F complex subunit 5
PF05115	Cytochrome B6-F complex subunit VI (PetL)
PF08041	PetM family of cytochrome b6f complex subunit 7
PF03742	PetN
PF09262	Peroxisome biogenesis factor 1, N-terminal
PF09263	Peroxisome biogenesis factor 1, N-terminal
PF05648	Peroxisomal biogenesis factor 11 (PEX11)
PF04695	Peroxisomal membrane anchor protein (Pex14p) conserved region
PF08610	Peroxisomal membrane protein (Pex16)
PF04614	Pex19 protein family
PF06398	Integral peroxisomal membrane peroxin
PF07163	Pex26 protein
PF04757	Pex2 / Pex12 amino terminal region
PF12484	Polymorphic PE/PPE proteins C terminal
PF03011	PFEMP DBL domain
PF09216	Pfg27
PF00365	Phosphofructokinase
PF00294	pfkB family carbohydrate kinase
PF02901	Pyruvate formate lyase
PF12367	Pyruvate ferredoxin oxidoreductase beta subunit C terminal
PF09070	PFU (PLAA family ubiquitin binding)
PF11567	Plasmodium falciparum UIS3 membrane protein
PF10333	GPI-Mannosyltransferase II co-activator
PF07543	Protein trafficking PGA2
PF13994	PgaD-like protein
PF07644	Planctomycete PGAMP
PF07819	PGAP1-like protein
PF09587	Bacterial capsule synthesis protein PGA_cap
PF15437	Plasminogen-binding protein pgbA C-terminal
PF15436	Plasminogen-binding protein pgbA N-terminal
PF15549	PGC7/Stella/Dppa3 domain
PF14083	PGDYG protein
PF13962	Domain of unknown function
PF00342	Phosphoglucose isomerase
PF00162	Phosphoglycerate kinase
PF08665	PglZ domain
PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
PF04608	Phosphatidylglycerophosphatase A
PF09656	Putative transmembrane protein (PGPGW)
PF09419	Mitochondrial PGP phosphatase
PF01471	Putative peptidoglycan binding domain
PF08823	Putative peptidoglycan binding domain
PF09374	Predicted Peptidoglycan domain
PF12229	Putative peptidoglycan binding domain
PF00169	PH domain
PF09638	Ph1570 protein
PF06542	Regulator protein PHA-1
PF07167	Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus
PF10653	Protein gp45 of Bacteriophage A118
PF09215	Bacteriophage T4, Gp8
PF09077	Mu B transposition protein, C terminal
PF09306	Bacteriophage, scaffolding protein
PF09097	Baseplate structural protein, domain 1
PF09096	Baseplate structural protein, domain 2
PF13550	Putative phage tail protein
PF10145	Phage-related minor tail protein
PF09251	Salmonella phage P22 tail-spike
PF09584	Phage shock protein PspD (Phageshock_PspD)
PF09583	Phage shock protein G (Phageshock_PspG)
PF08200	Bacteriophage 1.1 Protein
PF08010	Bacteriophage protein GP30.3
PF06019	Phage GP30.8 protein
PF05930	Prophage CP4-57 regulatory protein (AlpA)
PF06530	Phage antitermination protein Q
PF06323	Phage antitermination protein Q
PF10554	Ash protein family
PF05354	Phage Head-Tail Attachment
PF02304	Scaffold protein B
PF04717	Phage-related baseplate assembly protein
PF09356	Phage conserved hypothetical protein BR0599
PF12025	Phage protein C
PF05065	Phage capsid family
PF09018	P3 major capsid protein
PF03864	Phage major capsid protein E
PF05125	Phage major capsid protein, P2 family
PF05269	Bacteriophage CII protein
PF07022	Bacteriophage CI repressor helix-turn-helix domain
PF09063	Phage PP7 coat protein
PF05357	Phage Coat Protein A
PF05356	Phage Coat protein B
PF05371	Phage major coat protein, Gp8
PF05352	Phage Connector (GP10)
PF05135	Phage gp6-like head-tail connector protein
PF10743	Regulatory phage protein cox
PF06892	Phage regulatory protein CII (CP76)
PF05144	Phage replication protein CRI
PF02303	Helix-destabilising protein
PF11126	Transcriptional regulator DsbA
PF05367	Phage endonuclease I
PF02305	Capsid protein (F protein)
PF03335	Phage tail fibre repeat
PF03406	Phage tail fibre repeat
PF06820	Putative prophage tail fibre C-terminus
PF05798	Bacteriophage FRD3 protein
PF02306	Major spike protein (G protein)
PF11108	Viral glycoprotein L
PF07410	Streptococcus thermophilus bacteriophage Gp111 protein
PF10666	Phage protein Gp14
PF06854	Bacteriophage Gp15 protein
PF09355	Phage protein Gp19/Gp15/Gp42
PF06810	Phage minor structural protein GP20
PF10669	Protein gp23 (Bacteriophage A118)
PF13876	Phage protein (N4 Gp49/phage Sf6 gene 66) family
PF11246	Base plate wedge protein 53
PF05840	Bacteriophage replication gene A protein (GPA)
PF05954	Phage late control gene D protein (GPD)
PF05926	Phage head completion protein (GPL)
PF05929	Phage capsid scaffolding protein (GPO) serine peptidase
PF11113	Head assembly gene product
PF11133	Head fiber protein
PF06120	Tail length tape measure protein
PF04688	Phage lysis protein, holin
PF04531	Bacteriophage holin
PF04550	Phage holin family 2
PF05106	Phage holin family (Lysis protein S)
PF05105	Holin family
PF06946	Phage holin
PF10746	Phage holin family 6
PF11031	Bacteriophage T holin
PF11110	Baseplate hub distal subunit
PF05521	Phage head-tail joining protein
PF00589	Phage integrase family
PF13009	Putative phage integrase
PF09003	Bacteriophage lambda integrase, N-terminal domain
PF02899	Phage integrase, N-terminal SAM-like domain
PF12834	Phage integrase, N-terminal
PF14659	Phage integrase, N-terminal SAM-like domain
PF13495	Phage integrase, N-terminal SAM-like domain
PF13102	Phage integrase SAM-like domain
PF06992	Replication protein P
PF06894	Bacteriophage lambda minor tail protein (GpG)
PF03245	Bacteriophage Rz lysis protein
PF00959	Phage lysozyme
PF03863	Phage maturation protein
PF06152	Phage minor capsid protein 2
PF05939	Phage minor tail protein
PF04233	Phage Mu protein F like protein
PF07352	Bacteriophage Mu Gam like protein
PF06890	Bacteriophage Mu Gp45 protein
PF06322	Phage NinH protein
PF07471	Phage DNA packaging protein Nu1
PF06194	Phage Conserved Open Reading Frame 51
PF06528	Phage P2 GpE
PF06995	Phage P2 GpU
PF04860	Phage portal protein
PF05136	Phage portal protein, lambda family
PF09669	Phage regulatory protein Rha (Phage_pRha)
PF05133	Phage portal protein, SPP1 Gp6-like
PF04492	Bacteriophage replication protein O
PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)
PF10789	Phage RNA polymerase binding, RpbA
PF04984	Phage tail sheath protein
PF11134	Phage stabilisation protein
PF06841	T4-like virus tail tube protein gp19
PF06919	Phage Gp30.7 protein
PF03903	Phage T4 tail fibre
PF06591	T4-like phage nuclear disruption protein (Ndd)
PF05396	Phage T7 capsid assembly protein
PF03906	Phage T7 tail fibre protein
PF06222	Phage tail assembly chaperone
PF04630	Phage major tail protein
PF06199	Phage major tail protein 2
PF08813	Phage tail protein
PF05100	Phage minor tail protein L
PF08400	Prophage tail fibre N-terminal
PF05069	Phage virion morphogenesis family
PF06223	Minor tail protein T
PF06141	Phage minor tail protein U
PF05489	Phage Tail Protein X
PF10668	Phage terminase small subunit
PF07141	Putative bacteriophage terminase small subunit
PF05944	Phage small terminase subunit
PF04761	Lactococcus bacteriophage putative transcription regulator
PF04985	Phage tail tube protein FII
PF05155	Phage X family
PF09693	Phage uncharacterised protein (Phage_XkdX)
PF03334	Na+/H+ antiporter subunit
PF09602	Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg)
PF05597	Poly(hydroxyalcanoate) granule associated protein (phasin)
PF09361	Phasin protein
PF09246	PHAT
PF09650	Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn)
PF09712	Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
PF12551	Poly-beta-hydroxybutyrate polymerase N terminal
PF05233	PHB accumulation regulatory domain
PF07879	PHB/PHA accumulation regulator DNA-binding domain
PF06850	PHB de-polymerase C-terminus
PF00628	PHD-finger
PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
PF13831	PHD-finger
PF13922	PHD domain of transcriptional enhancer, Asx
PF02332	Methane/Phenol/Toluene Hydroxylase
PF06099	Phenol hydroxylase subunit
PF13557	Putative MetA-pathway of phenol degradation
PF04663	Phenol hydroxylase conserved region
PF09662	Phenylphosphate carboxylase gamma subunit (Phenyl_P_gamma)
PF08015	Fungal mating-type pheromone
PF07976	Phenol hydroxylase, C-terminal dimerisation domain
PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
PF08916	Phenylalanine zipper
PF03660	PHF5-like protein
PF09524	Conserved phage C-terminus (Phg_2220_C)
PF06720	Bacteriophage phi-29 early protein GP16.7
PF05435	Phi-29 DNA terminal protein GP3
PF05464	Phi-29-like late genes activator (early protein GP4)
PF12699	phiKZ-like phage internal head proteins
PF04674	Phosphate-induced protein 1 conserved region
PF07243	Phlebovirus glycoprotein G1
PF07245	Phlebovirus glycoprotein G2
PF07246	Phlebovirus nonstructural protein NS-M
PF03831	PhnA protein
PF08274	PhnA Zinc-Ribbon
PF06754	Phosphonate metabolism protein PhnG
PF05845	Bacterial phosphonate metabolism protein (PhnH)
PF05861	Bacterial phosphonate metabolism protein (PhnI)
PF06007	Phosphonate metabolism protein PhnJ
PF01384	Phosphate transporter family
PF11124	Inorganic phosphate transporter Pho86
PF10032	Phosphate transport (Pho88)
PF09423	PhoD-like phosphatase
PF02562	PhoH-like protein
PF10142	PhoPQ-activated pathogenicity-related protein
PF08918	PhoQ Sensor
PF02114	Phosducin
PF10143	2,3-bisphosphoglycerate-independent phosphoglycerate mutase
PF01663	Type I phosphodiesterase / nucleotide pyrophosphatase
PF04185	Phosphoesterase family
PF04272	Phospholamban
PF00068	Phospholipase A2
PF05826	Phospholipase A2
PF09056	Prokaryotic phospholipase A2
PF04916	Phospholipase B
PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
PF00922	Vesiculovirus phosphoprotein
PF00343	Carbohydrate phosphorylase
PF10195	DNA-binding nuclear phosphoprotein p8
PF13914	Phostensin PP1-binding and SH3-binding region
PF13916	PP1-regulatory protein, Phostensin N-terminal
PF08543	Phosphomethylpyrimidine kinase
PF00124	Photosynthetic reaction centre protein
PF01895	PhoU domain
PF01865	Protein of unknown function DUF47
PF02811	PHP domain
PF13263	PHP-associated
PF08005	PHR domain
PF11131	Rap-phr extracellular signalling
PF14728	PTHB1 C-terminus
PF14727	PTHB1 N-terminus
PF12129	Male germ-cell putative homeodomain transcription factor
PF00360	Phytochrome region
PF00502	Phycobilisome protein
PF02972	Phycoerythrin, alpha/beta chain
PF05721	Phytanoyl-CoA dioxygenase (PhyH)
PF02333	Phytase
PF13449	Esterase-like activity of phytase
PF15438	Antigenic membrane protein of phytoplasma
PF05023	Phytochelatin synthase
PF09328	Domain of unknown function (DUF1984)
PF07124	Phytoreovirus outer capsid protein P8
PF05451	Phytoreovirus nonstructural protein Pns10/11
PF07236	Phytoreovirus S7 protein
PF05878	Phytoreovirus nonstructural protein Pns9/Pns10
PF03284	Phenazine biosynthesis protein A/B
PF02567	Phenazine biosynthesis-like protein
PF15411	Pleckstrin homology domain
PF15413	Pleckstrin homology domain
PF08458	Plant pleckstrin homology-like region
PF14593	PH domain
PF15404	Pleckstrin homology domain
PF15405	Pleckstrin homology domain
PF15406	Pleckstrin homology domain
PF15408	Pleckstrin homology domain
PF15409	Pleckstrin homology domain
PF15410	Pleckstrin homology domain
PF14844	PH domain associated with Beige/BEACH
PF00388	Phosphatidylinositol-specific phospholipase C, X domain
PF00387	Phosphatidylinositol-specific phospholipase C, Y domain
PF08577	PI31 proteasome regulator
PF11566	PI31 proteasome regulator N-terminal
PF00613	Phosphoinositide 3-kinase family, accessory domain (PIK domain)
PF10486	Phosphoinositide 3-kinase gamma adapter protein p101 subunit
PF00792	Phosphoinositide 3-kinase C2
PF02192	PI3-kinase family, p85-binding domain
PF00794	PI3-kinase family, ras-binding domain
PF00454	Phosphatidylinositol 3- and 4-kinase
PF06363	Picornaviridae P3A protein
PF02226	Picornavirus coat protein (VP4)
PF00947	Picornavirus core protein 2A
PF01552	Picornavirus 2B protein
PF00640	Phosphotyrosine interaction domain (PTB/PID)
PF14719	Phosphotyrosine interaction domain (PTB/PID)
PF05092	Per os infectivity
PF05970	PIF1-like helicase
PF06699	GPI biosynthesis protein family Pig-F
PF10181	GPI-GlcNAc transferase complex, PIG-H component
PF02585	GlcNAc-PI de-N-acetylase
PF08510	PIG-P
PF10510	Phosphatidylinositol-glycan biosynthesis class S protein
PF06728	GPI transamidase subunit PIG-U
PF08320	PIG-X / PBN1
PF15159	Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
PF08288	PIGA (GPI anchor biosynthesis)
PF06324	Pigment-dispersing hormone (PDH)
PF04987	Phosphatidylinositolglycan class N (PIG-N)
PF08190	pre-RNA processing PIH1/Nop17
PF11522	Yeast phosphatidylinositol-4-OH kinase Pik1
PF13805	Eisosome component PIL1
PF10623	Plasmid conjugative transfer protein PilI
PF00114	Pilin (bacterial filament)
PF14245	Type IV pilin PilA
PF11530	Minor type IV pilin, PilX
PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
PF07419	PilM
PF11104	Type IV pilus assembly protein PilM;
PF05137	Fimbrial assembly protein (PilN)
PF04350	Pilus assembly protein, PilO
PF04351	Pilus assembly protein, PilP
PF08805	PilS N terminal
PF15453	Protein incorporated later into Tight Junctions
PF09476	Pilus biogenesis CpaD protein (pilus_cpaD)
PF11356	Type IV pilus biogenesis
PF13681	Type IV pilus assembly protein PilX C-term
PF14341	PilX N-terminal
PF07238	PilZ domain
PF01850	PIN domain
PF04696	pinin/SDK/memA/ protein conserved region
PF04697	pinin/SDK conserved region
PF14324	PINIT domain
PF10130	PIN domain
PF13470	PIN domain
PF13638	PIN domain
PF12260	Protein-kinase domain of FAM69
PF14875	N-term cysteine-rich ER, FAM69
PF01504	Phosphatidylinositol-4-phosphate 5-Kinase
PF07108	PipA protein
PF00399	Yeast PIR protein repeat
PF02678	Pirin
PF05726	Pirin C-terminal cupin domain
PF15099	Phosphoinositide-interacting protein family
PF06201	PITH domain
PF02171	Piwi domain
PF12306	Inclusion body protein
PF00224	Pyruvate kinase, barrel domain
PF00801	PKD domain
PF08016	Polycystin cation channel
PF02827	cAMP-dependent protein kinase inhibitor
PF02173	pKID domain
PF00069	Protein kinase domain
PF00433	Protein kinase C terminal domain
PF07714	Protein tyrosine kinase
PF06878	Pkip-1 protein
PF12474	Polo kinase kinase
PF14032	PknH-like extracellular domain
PF08636	ER protein Pkr1
PF02887	Pyruvate kinase, alpha/beta domain
PF02253	Phospholipase A1
PF06951	Group XII secretory phospholipase A2 precursor (PLA2G12)
PF01735	Lysophospholipase catalytic domain
PF02988	Phospholipase A2 inhibitor
PF08686	PLAC (protease and lacunin) domain
PF04749	PLAC8 family
PF15205	Placenta-specific protein 9
PF07595	Planctomycete extracellular
PF10532	Plant specific N-all beta domain
PF06694	Plant nuclear matrix protein 1 (NMP1)
PF04827	Plant transposon protein
PF01307	Plant viral movement protein
PF10533	Plant zinc cluster domain
PF05015	Plasmid maintenance system killer protein
PF01672	Putative plasmid partition protein
PF09686	Plasmid protein of unknown function (Plasmid_RAQPRD)
PF05016	Plasmid stabilisation system protein
PF10784	Plasmid stability protein
PF12703	Toxin of toxin-antitoxin type 1 system
PF06769	Plasmid encoded toxin Txe
PF05403	Plasmodium histidine-rich protein (HRPII/III)
PF05795	Plasmodium vivax Vir protein
PF09715	Plasmodium protein of unknown function (Plasmod_dom_1)
PF07981	Plasmodium repeat_MYXSPDY
PF06247	Plasmodium ookinete surface protein Pvs28
PF01477	PLAT/LH2 domain
PF04640	PLATZ transcription factor
PF08703	PLC-beta C terminal
PF00614	Phospholipase D Active site motif
PF13091	PLD-like domain
PF13918	PLD-like domain
PF13396	Phospholipase_D-nuclease N-terminal
PF12357	Phospholipase D C terminal
PF00681	Plectin repeat
PF08337	Plexin cytoplasmic RasGAP domain
PF01690	Potato leaf roll virus readthrough protein
PF08429	PLU-1-like protein
PF07715	TonB-dependent Receptor Plug Domain
PF10559	Plug domain of Sec61p
PF03126	Plus-3 domain
PF11477	Sialyltransferase PMO188
PF15150	Phorbol-12-myristate-13-acetate-induced
PF01523	Putative modulator of DNA gyrase
PF09373	Pseudomurein-binding repeat
PF08066	PMC2NT (NUC016) domain
PF10536	Plant mobile domain
PF04043	Plant invertase/pectin methylesterase inhibitor
PF05287	PMG protein
PF01238	Phosphomannose isomerase type I
PF03332	Eukaryotic phosphomannomutase
PF14100	Methane oxygenase PmoA
PF08114	ATPase proteolipid family
PF00822	PMP-22/EMP/MP20/Claudin family
PF01679	Proteolipid membrane potential modulator
PF14416	PMR5 N terminal Domain
PF11183	Polymyxin resistance protein PmrD
PF15322	Protein missing in infertile sperm 1, putative
PF01625	Peptide methionine sulfoxide reductase
PF02366	Dolichyl-phosphate-mannose-protein mannosyltransferase
PF13231	Dolichyl-phosphate-mannose-protein mannosyltransferase
PF11647	C-terminal region of Pasteurella multocida toxin residues 569-1285
PF06436	Pneumovirus matrix protein 2 (M2)
PF05539	Pneumovirinae attachment membrane glycoprotein G
PF07380	Pneumovirus M2 protein
PF03393	Pneumovirus matrix protein
PF03246	Pneumovirus nucleocapsid protein
PF03438	Pneumovirus NS1 protein
PF02478	Pneumovirus phosphoprotein
PF12222	Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A
PF08645	Polynucleotide kinase 3 phosphatase
PF14893	PNMA
PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
PF12111	Polyribonucleotide phosphorylase C terminal
PF10590	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
PF01048	Phosphorylase superfamily
PF15365	Proline-rich nuclear receptor coactivator
PF02233	NAD(P) transhydrogenase beta subunit
PF10450	POC1 chaperone
PF10114	Sensory domain found in PocR
PF05808	Podoplanin
PF05894	Podovirus DNA encapsidation protein (Gp16)
PF03833	DNA polymerase II large subunit DP2
PF01357	Pollen allergen
PF01620	Ribonuclease (pollen allergen)
PF01190	Pollen proteins Ole e I like
PF00659	POLO box duplicated region
PF01743	Poly A polymerase head domain
PF12626	Polymerase A arginine-rich C-terminus
PF12627	Probable RNA and SrmB- binding site of polymerase A
PF01518	Sigma NS protein
PF00738	Polyhedrin
PF03364	Polyketide cyclase / dehydrase and lipid transport
PF10604	Polyketide cyclase / dehydrase and lipid transport
PF01736	Polyomavirus agnoprotein
PF00718	Polyomavirus coat protein
PF00761	Polyomavirus coat protein
PF06431	Polyomavirus large T antigen C-terminus
PF00348	Polyprenyl synthetase
PF01522	Polysaccharide deacetylase
PF04748	Divergent polysaccharide deacetylase
PF15421	Putative polysaccharide deacetylase
PF14099	Polysaccharide lyase
PF01943	Polysaccharide biosynthesis protein
PF02719	Polysaccharide biosynthesis protein
PF13440	Polysaccharide biosynthesis protein
PF04669	Polysaccharide biosynthesis
PF14667	Polysaccharide biosynthesis C-terminal domain
PF08485	Polysaccharide biosynthesis protein C-terminal
PF02563	Polysaccharide biosynthesis/export protein
PF08418	DNA polymerase alpha subunit B N-terminal
PF15229	POM121 family
PF09437	Pombe specific 5TM protein
PF07442	Ponericin
PF06978	Ribonucleases P/MRP protein subunit POP1
PF04831	Popeye protein conserved region
PF08170	POPLD (NUC188) domain
PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
PF11565	Alpha helical Porin B
PF00267	Gram-negative porin
PF02530	Porin subfamily
PF01459	Eukaryotic porin
PF13609	Gram-negative porin
PF09381	Outer membrane protein G (OmpG)
PF11389	Leptospira porin protein OmpL1
PF07396	Phosphate-selective porin O and P
PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
PF03900	Porphobilinogen deaminase, C-terminal domain
PF09697	Protein of unknown function (Porph_ging)
PF11955	Plant organelle RNA recognition domain
PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
PF13797	Post-transcriptional regulator
PF02765	Telomeric single stranded DNA binding POT1/CDC13
PF11404	Potassium voltage-gated channel
PF09604	F subunit of K+-transporting ATPase (Potass_KdpF)
PF00280	Potato inhibitor I family
PF06184	Potexvirus coat protein
PF08478	POTRA domain, FtsQ-type
PF08479	POTRA domain, ShlB-type
PF13608	Protein P3 of Potyviral polyprotein
PF00767	Potyvirus coat protein
PF08440	Potyviridae polyprotein
PF00157	Pou domain - N-terminal to homeobox domain
PF07526	Associated with HOX
PF06227	dsDNA Poxvirus
PF04395	Poxvirus B22R protein
PF13168	Poxvirus B22R protein C-terminal
PF13169	Poxvirus B22R protein N-terminal
PF05061	Poxvirus A11 Protein
PF04651	Poxvirus A12 protein
PF05767	Poxvirus virion envelope protein A14
PF05323	Poxvirus A21 Protein
PF04848	Poxvirus A22 protein
PF04584	Poxvirus A28 family
PF06086	Orthopoxvirus A26L/A30L protein
PF05771	Poxvirus A31 protein
PF04665	Poxvirus A32 protein
PF05288	Poxvirus A3L Protein
PF04948	Poxvirus A51 protein
PF04924	Poxvirus A6 protein
PF04745	VITF-3 subunit protein
PF04835	A9 protein conserved region
PF03286	Pox virus Ag35 surface protein
PF10640	mRNA capping enzyme N-terminal, ATPase and guanylyltransferase
PF04508	Viral A-type inclusion protein repeat
PF03336	Poxvirus C4/C10 protein
PF03287	Poxvirus C7/F8A protein
PF04701	Pox virus D2 protein
PF04580	Chordopoxvirinae D3 protein
PF03288	Poxvirus D5 protein-like
PF04805	E10-like protein conserved region
PF04497	Poxviridae protein
PF04656	Pox virus E6 protein
PF03394	Poxvirus E8 protein
PF04943	Poxvirus F11 protein
PF03337	Poxvirus F12L protein
PF04596	Poxvirus protein F15
PF04708	Poxvirus F16 protein
PF04767	DNA-binding 11 kDa phosphoprotein
PF04599	Poxvirus G5 protein
PF05503	Poxvirus G7-like
PF04787	Late protein H7
PF03289	Poxvirus protein I1
PF04661	Poxvirus I3 ssDNA-binding protein
PF04713	Poxvirus protein I5
PF04595	Poxvirus I6-like family
PF05718	Poxvirus intermediate transcription factor
PF03338	Poxvirus J1 protein
PF03339	Poxvirus L3/FP4 protein
PF04872	Poxvirus L5 protein family
PF03356	Viral late protein H2
PF04887	Poxvirus M2 protein
PF03291	mRNA capping enzyme
PF03341	Poxvirus mRNA capping enzyme, small subunit
PF05313	Poxvirus P21 membrane protein
PF03213	Poxvirus P35 protein
PF03395	Poxvirus P4A protein
PF03292	Poxvirus P4B major core protein
PF03296	Poxvirus poly(A) polymerase nucleotidyltransferase domain
PF12629	Poxvirus poly(A) polymerase C-terminal domain
PF12630	Poxvirus poly(A) polymerase N-terminal domain
PF03294	RNA polymerase-associated transcription specificity factor, Rap94
PF03340	Poxvirus rifampicin resistance protein
PF03293	Poxvirus DNA-directed RNA polymerase, 18 kD subunit
PF05320	Poxvirus DNA-directed RNA polymerase 19 kDa subunit
PF05273	Poxvirus RNA polymerase 22 kDa subunit
PF03396	Poxvirus DNA-directed RNA polymerase, 35 kD subunit
PF05445	Poxvirus serine/threonine protein kinase
PF04490	Poxvirus T4 protein, C terminus
PF04491	Poxvirus T4 protein, N terminus
PF03295	Poxvirus trans-activator protein A1 C-terminal
PF03355	Viral Trans-Activator Protein
PF04441	Poxvirus early transcription factor (VETF), large subunit
PF05566	Orthopoxvirus interleukin 18 binding protein
PF04947	Poxvirus Late Transcription Factor VLTF3 like
PF04498	Poxvirus nucleic acid binding protein VP8/L4R
PF00550	Phosphopantetheine attachment site
PF14573	Acyl-carrier
PF07430	Phloem filament protein PP1
PF10488	Phosphatase-1 catalytic subunit binding region
PF15276	Protein phosphatase 1 binding
PF05361	PKC-activated protein phosphatase-1 inhibitor
PF14299	Phloem protein 2
PF10252	Casein kinase substrate phosphoprotein PP28
PF00481	Protein phosphatase 2C
PF13672	Protein phosphatase 2C
PF07830	Protein serine/threonine phosphatase 2C, C-terminal domain
PF02818	PPAK motif
PF12577	PPAR gamma N-terminal region
PF04151	Bacterial pre-peptidase C-terminal domain
PF15060	Differentiation and proliferation regulator
PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
PF00823	PPE family
PF07491	Protein phosphatase inhibitor
PF03976	Polyphosphate kinase 2 (PPK2)
PF12142	Polyphenol oxidase middle domain
PF12143	Protein of unknown function (DUF_B2219)
PF15503	Protein phosphatase 1 regulatory subunit 35 C-terminus
PF09184	PPP4R2
PF08321	PPP5 TPR repeat region
PF14895	Protein phosphatase 1 inhibitor
PF01535	PPR repeat
PF12854	PPR repeat
PF13041	PPR repeat family
PF13812	Pentatricopeptide repeat domain
PF01239	Protein prenyltransferase alpha subunit repeat
PF14427	Pput_2613-like deaminase
PF00519	Papillomavirus helicase
PF00524	E1 Protein, N terminal domain
PF00511	E2 (early) protein, C terminal
PF00508	E2 (early) protein, N terminal
PF02541	Ppx/GppA phosphatase family
PF02503	Polyphosphate kinase middle domain
PF13090	Polyphosphate kinase C-terminal domain
PF13089	Polyphosphate kinase N-terminal domain
PF03012	Phosphoprotein
PF04193	PQ loop repeat
PF04403	Paraquat-inducible protein A
PF01011	PQQ enzyme repeat
PF08042	PqqA family
PF05402	Coenzyme PQQ synthesis protein D (PqqD)
PF13360	PQQ-like domain
PF13570	PQQ-like domain
PF01502	Phosphoribosyl-AMP cyclohydrolase
PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
PF03208	PRA1 family protein
PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
PF09372	PRANC domain
PF15314	Proline-rich acidic protein 1, pregnancy-specific uterine
PF05239	PRC-barrel domain
PF14343	PrcB C-terminal
PF10253	Mitotic checkpoint regulator, MAD2B-interacting
PF03967	Photosynthetic reaction centre, H-chain N-terminal region
PF00874	PRD domain
PF09214	Bacteriophage Prd1, adsorption protein P2
PF08270	M protein trans-acting positive regulator (MGA) PRD domain
PF05033	Pre-SET motif
PF02996	Prefoldin subunit
PF01920	Prefoldin subunit
PF13758	Prefoldin subunit
PF04707	PRELI-like family
PF07156	Prenylcysteine lyase
PF00432	Prenyltransferase and squalene oxidase repeat
PF01255	Putative undecaprenyl diphosphate synthase
PF13243	Prenyltransferase-like
PF13249	Prenyltransferase-like
PF09687	Plasmodium RESA N-terminal
PF01080	Presenilin
PF09029	5-aminolevulinate synthase presequence
PF07530	Associated with zinc fingers
PF06875	Plethodontid receptivity factor PRF
PF09480	Type III secretion system protein PrgH-EprH (PrgH)
PF12666	PrgI family protein
PF09627	PrgU-like protein
PF07929	Plasmid pRiA4b ORF-3-like protein
PF00156	Phosphoribosyl transferase domain
PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
PF14572	Phosphoribosyl synthetase-associated domain
PF07445	Primosomal replication protein priB and priC
PF08708	Primase C terminal 1 (PriCT-1)
PF08707	Primase C terminal 2 (PriCT-2)
PF09250	Bifunctional DNA primase/polymerase, N-terminal
PF08273	Zinc-binding domain of primase-helicase
PF00377	Prion/Doppel alpha-helical domain
PF11587	Major prion protein bPrPp - N terminal
PF03991	Copper binding octapeptide repeat
PF03063	Prismane/CO dehydrogenase family
PF00485	Phosphoribulokinase / Uridine kinase family
PF06798	PrkA serine protein kinase C-terminal domain
PF07915	Glucosidase II beta subunit-like protein
PF12999	Glucosidase II beta subunit-like
PF13015	Glucosidase II beta subunit-like protein
PF06325	Ribosomal protein L11 methyltransferase (PrmA)
PF05185	PRMT5 arginine-N-methyltransferase
PF13010	Primase helical domain
PF15174	Prion-related protein testis-specific
PF09286	Pro-kumamolisin, activation domain
PF05824	Pro-melanin-concentrating hormone (Pro-MCH)
PF07421	Neurotensin/neuromedin N precursor
PF15240	Proline-rich
PF15455	Proline-rich 19
PF08082	PRO8NT (NUC069), PrP8 N-terminal domain
PF08083	PROCN (NUC071) domain
PF08084	PROCT (NUC072) domain
PF00235	Profilin
PF02161	Progesterone receptor
PF12177	Prohormone convertase enzyme
PF14457	Prokaryotic E2 family A
PF14461	Prokaryotic E2 family B
PF14459	Prokaryotic E2 family C
PF14460	Prokaryotic E2 family D
PF14462	Prokaryotic E2 family E
PF14464	Prokaryotic homologs of the JAB domain
PF14446	Prokaryotic RING finger family 1
PF14445	Prokaryotic RING finger family 2
PF14447	Prokaryotic RING finger family 4
PF09228	Prokaryotic Transcriptional repressor TraM
PF06607	Prokineticin
PF14454	Prokaryotic Ubiquitin
PF15621	Proline-rich submaxillary gland androgen-regulated family
PF15172	Prolactin-releasing peptide
PF05617	Prolamin-like
PF05478	Prominin
PF03759	PRONE (Plant-specific Rop nucleotide exchanger)
PF08127	Peptidase family C1 propeptide
PF08126	Propeptide_C25
PF02244	Carboxypeptidase activation peptide
PF06605	Prophage endopeptidase tail
PF04352	ProQ/FINO family
PF09180	Prolyl-tRNA synthetase, C-terminal
PF09181	Prolyl-tRNA synthetase, C-terminal
PF07259	ProSAAS precursor
PF07376	Prosystemin
PF08188	Spermatozal protamine family
PF00260	Protamine P1
PF00841	Sperm histone P2
PF00227	Proteasome subunit
PF10584	Proteasome subunit A N-terminal signature
PF10508	Proteasome non-ATPase 26S subunit
PF04683	Proteasome complex subunit Rpn13 ubiquitin receptor
PF12283	Bacteriophage protein K
PF03247	Prothymosin/parathymosin family
PF08374	Protocadherin
PF11563	Protoglobin
PF02428	Potato type II proteinase inhibitor family
PF05373	L-proline 3-hydroxylase, C-terminal
PF02983	Alpha-lytic protease prodomain
PF00484	Carbonic anhydrase
PF01619	Proline dehydrogenase
PF14850	DNA-binding domain of Proline dehydrogenase
PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
PF05544	Proline racemase
PF02840	Prp18 domain
PF08606	Prp19/Pso4-like
PF06991	Splicing factor, Prp19-binding domain
PF06424	PRP1 splicing factor, N-terminal
PF12230	Pre-mRNA splicing factor PRP21 like protein
PF08572	pre-mRNA processing factor 3 (PRP3)
PF09785	Prp31 C terminal domain
PF03371	PRP38 family
PF12871	Pre-mRNA-splicing factor 38-associated hydrophilic C-term
PF08799	pre-mRNA processing factor 4 (PRP4) like
PF12134	PRP8 domain IV core
PF04303	PrpF protein
PF06506	Propionate catabolism activator
PF07069	Porcine reproductive and respiratory syndrome virus 2b
PF02340	PRRSV putative envelope protein
PF13367	Protease prsW family
PF11202	Phosphoribosyl transferase (PRTase)
PF15609	Phosphoribosyl transferase
PF15610	PRTase ComF-like
PF01366	Herpesvirus processing and transport protein
PF08372	Plant phosphoribosyltransferase C-terminal
PF13765	SPRY-associated domain
PF12465	Proteasome beta subunits C terminal
PF14765	Polyketide synthase dehydratase
PF00223	Photosystem I psaA/psaB protein
PF02531	PsaD
PF02605	Photosystem I reaction centre subunit XI
PF07465	Photosystem I protein M (PsaM)
PF05479	Photosystem I reaction centre subunit N (PSAN or PSI-N)
PF08078	PsaX family
PF03912	Psb28 protein
PF00737	Photosystem II 10 kDa phosphoprotein
PF02532	Photosystem II reaction centre I protein (PSII 4.8 kDa protein)
PF01788	PsbJ
PF02533	Photosystem II 4 kDa reaction centre component
PF02419	PsbL protein
PF05151	Photosystem II reaction centre M protein (PsbM)
PF02468	Photosystem II reaction centre N protein (psbN)
PF01789	PsbP
PF05757	Oxygen evolving enhancer protein 3 (PsbQ)
PF04725	Photosystem II 10 kDa polypeptide PsbR
PF01405	Photosystem II reaction centre T protein
PF06514	Photosystem II 12 kDa extrinsic protein (PsbU)
PF07123	Photosystem II reaction centre W protein (PsbW)
PF06596	Photosystem II reaction centre X protein (PsbX)
PF06298	Photosystem II protein Y (PsbY)
PF07635	Planctomycete cytochrome C
PF07583	Protein of unknown function (DUF1549)
PF07627	Protein of unknown function (DUF1588)
PF07587	Protein of unknown function (DUF1553)
PF07624	Protein of unknown function (DUF1585)
PF07626	Protein of unknown function (DUF1587)
PF07631	Protein of unknown function (DUF1592)
PF07637	Protein of unknown function (DUF1595)
PF12588	Phophatidylserine decarboxylase
PF01416	tRNA pseudouridine synthase
PF00849	RNA pseudouridylate synthase
PF07276	Apopolysialoglycoprotein (PSGP)
PF01437	Plexin repeat
PF06952	PsiA protein
PF06290	Plasmid SOS inhibition protein (PsiB)
PF06146	Phosphate-starvation-inducible E
PF07769	psiF repeat
PF00421	Photosystem II protein
PF14870	Photosynthesis system II assembly factor YCF48
PF13326	Photosystem II Pbs27
PF05969	Photosystem II complex subunit Ycf12
PF00796	Photosystem I reaction centre subunit VIII
PF02427	Photosystem I reaction centre subunit IV / PsaE
PF02507	Photosystem I reaction centre subunit III
PF03244	Photosystem I reaction centre subunit VI
PF01701	Photosystem I reaction centre subunit IX / PsaJ
PF01241	Photosystem I psaG / psaK
PF06404	Phytosulfokine precursor protein (PSK)
PF07704	Rv0623-like transcription factor
PF04046	PSP
PF04468	PSP1 C-terminal conserved region
PF05825	Beta-microseminoprotein (PSP-94)
PF04012	PspA/IM30 family
PF06667	Phage shock protein B
PF04024	PspC domain
PF04839	Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
PF07636	PSRT
PF03034	Phosphatidyl serine synthase
PF07455	Phage polarity suppression protein (Psu)
PF02666	Phosphatidylserine decarboxylase
PF04230	Polysaccharide pyruvyl transferase
PF04886	PT repeat
PF07591	Pretoxin HINT domain
PF14449	Pre-toxin TG
PF04829	Pre-toxin domain with VENN motif
PF11468	Aromatic prenyltransferase Orf2
PF01515	Phosphate acetyl/butaryl transferase
PF08416	Phosphotyrosine-binding domain
PF12738	twin BRCT domain
PF15028	Pre-T-cell antigen receptor
PF02126	Phosphotriesterase family
PF10409	C2 domain of PTEN tumour-suppressor protein
PF01329	Pterin 4 alpha carbinolamine dehydratase
PF00809	Pterin binding enzyme
PF01981	Peptidyl-tRNA hydrolase PTH2
PF01091	PTN/MK heparin-binding protein family, C-terminal domain
PF05196	PTN/MK heparin-binding protein family, N-terminal domain
PF03095	Phosphotyrosyl phosphate activator (PTPA) protein
PF04387	Protein tyrosine phosphatase-like protein, PTPLA
PF14566	Inositol hexakisphosphate
PF01242	6-pyruvoyl tetrahydropterin synthase
PF10131	6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein
PF12453	Protein tyrosine phosphatase N terminal
PF12789	Phage tail repeat like
PF00854	POT family
PF15237	PTRF/SDPR family
PF00381	PTS HPr component phosphorylation site
PF03829	PTS system glucitol/sorbitol-specific IIA component
PF03830	PTS system sorbose subfamily IIB component
PF01885	RNA 2'-phosphotransferase, Tpt1 / KptA family
PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
PF00367	phosphotransferase system, EIIB
PF02378	Phosphotransferase system, EIIC
PF13303	Phosphotransferase system, EIIC
PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
PF01472	PUA domain
PF14306	PUA-like domain
PF09409	PUB domain
PF03209	PUCC protein
PF07905	Purine catabolism regulatory protein-like family
PF03714	Bacterial pullanase-associated domain
PF00806	Pumilio-family RNA binding repeat
PF05398	PufQ cytochrome subunit
PF08324	PUL domain
PF11773	Type II secretory pathway pseudopilin
PF09691	Bacterial chaperone lipoprotein (PulS_OutS)
PF05639	Pup-like protein
PF03136	Pup-ligase protein
PF04845	PurA ssDNA and RNA-binding protein
PF02700	Phosphoribosylformylglycinamidine (FGAM) synthase
PF02245	Methylpurine-DNA glycosylase (MPG)
PF09182	Bacterial purine repressor, N-terminal
PF06971	Putative DNA-binding protein N-terminus
PF06888	Putative Phosphatase
PF06637	PV-1 protein (PLVAP)
PF01862	Pyruvoyl-dependent arginine decarboxylase (PvlArgDC)
PF07768	PVL ORF-50-like family
PF12433	Parvovirus non-structural protein 1
PF01480	PWI domain
PF00855	PWWP domain
PF00787	PX domain
PF02194	PXA domain
PF12828	PX-associated
PF12778	PXPV repeat (3 copies)
PF15214	Peroxisomal testis-specific protein 1
PF02436	Conserved carboxylase domain
PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
PF11112	Pyocin activator protein PrtN
PF06958	S-type Pyocin
PF08052	PyrBI operon leader peptide
PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
PF00282	Pyridoxal-dependent decarboxylase conserved domain
PF12766	Pyridoxamine 5'-phosphate oxidase
PF01243	Pyridoxamine 5'-phosphate oxidase
PF12900	Pyridoxamine 5'-phosphate oxidase
PF13883	Pyridoxamine 5'-phosphate oxidase
PF02758	PAAD/DAPIN/Pyrin domain
PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
PF00719	Inorganic pyrophosphatase
PF03013	Pyrimidine dimer DNA glycosylase
PF00070	Pyridine nucleotide-disulphide oxidoreductase
PF07992	Pyridine nucleotide-disulphide oxidoreductase
PF13738	Pyridine nucleotide-disulphide oxidoreductase
PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
PF09690	Plasmodium yoelii subtelomeric region (PYST-C1)
PF09689	Plasmodium yoelii repeat (PY_rept_46)
PF06640	P protein C-terminus
PF06321	Major fimbrial subunit protein (FimA)
PF01483	Proprotein convertase P-domain
PF09796	Ubiquinol-cytochrome-c reductase complex subunit (QCR10)
PF08992	Quinohemoprotein amine dehydrogenase, gamma subunit
PF08880	QLQ
PF14930	Quinohemoprotein amine dehydrogenase, alpha subunit domain II
PF09099	Quinohemoprotein amine dehydrogenase, alpha subunit domain III
PF09100	Quinohemoprotein amine dehydrogenase, alpha subunit domain IV
PF07640	QPP
PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
PF06508	Queuosine biosynthesis protein QueC
PF14489	QueF-like protein
PF14819	Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
PF06177	QueT transporter
PF02547	Queuosine biosynthesis protein
PF11463	R.HinP1I restriction endonuclease
PF01424	R3H domain
PF13902	R3H-associated N-terminal domain
PF00788	Ras association (RalGDS/AF-6) domain
PF15208	Rab15 effector
PF13890	Rab3 GTPase-activating protein catalytic subunit
PF14656	Rab3 GTPase-activating protein regulatory subunit C-terminus
PF14655	Rab3 GTPase-activating protein regulatory subunit N-terminus
PF09311	Rabaptin-like protein
PF07019	Rab5-interacting protein (Rab5ip)
PF03528	Rabaptin
PF00566	Rab-GTPase-TBC domain
PF07711	Rab geranylgeranyl transferase alpha-subunit, insert domain
PF04698	Rab effector MyRIP/melanophilin C-terminus
PF09632	Rac1-binding domain
PF13615	Putative alanine racemase
PF02144	Repair protein Rad1/Rec1/Rad17
PF03834	Binding domain of DNA repair protein Ercc1 (rad10/Swi10)
PF03215	Rad17 cell cycle checkpoint protein
PF04824	Conserved region of Rad21 / Rec8 like protein
PF04825	N terminus of Rad21 / Rec8 like protein
PF08730	Rad33
PF03835	Rad4 transglutaminase-like domain
PF04423	Rad50 zinc hook motif
PF08423	Rad51
PF04098	Rad52/22 family double-strand break repair protein
PF08658	Rad54 N terminal
PF11976	Ubiquitin-2 like Rad60 SUMO-like
PF13881	Ubiquitin-2 like Rad60 SUMO-like
PF04139	Rad9
PF08605	Fungal Rad9-like Rad53-binding
PF04002	RadC-like JAB domain
PF04712	Radial spokehead-like protein
PF06098	Radial spoke protein 3
PF04055	Radical SAM superfamily
PF08497	Radical SAM N-terminal
PF05691	Raffinose synthase or seed imbibition protein Sip1
PF15250	Raftlin
PF12940	Recombination-activation protein 1 (RAG1)
PF03089	Recombination activating protein 2
PF13341	RAG2 PHD domain
PF08652	RAI1 like PD-(D/E)XK nuclease
PF10257	Retinoic acid induced 16-like protein
PF11058	Antirestriction protein Ral
PF05498	Rapid ALkalinization Factor (RALF)
PF15320	mRNA cap methylation, RNMT-activating mini protein
PF04901	Receptor activity modifying family
PF06624	Ribosome associated membrane protein RAMP4
PF03787	RAMP superfamily
PF05508	RanGTP-binding protein
PF07834	RanGAP1 C-terminal domain
PF00638	RanBP1 domain
PF08373	RAP domain
PF03085	Rhoptry-associated protein 1 (RAP-1)
PF07218	Rhoptry-associated protein 1 (RAP-1)
PF09197	Rap1, DNA-binding
PF11626	TRF2-interacting telomeric protein/Rap1 - C terminal domain
PF08771	Rapamycin binding domain
PF12137	RNA polymerase recycling family C-terminal
PF10579	Rapsyn N-terminal myristoylation and linker region
PF14538	Raptor N-terminal CASPase like domain
PF02145	Rap/ran-GAP
PF00071	Ras family
PF00616	GTPase-activator protein for Ras-like GTPase
PF03836	RasGAP C-terminus
PF00617	RasGEF domain
PF00618	RasGEF N-terminal motif
PF14663	Rapamycin-insensitive companion of mTOR RasGEF_N domain
PF14847	Ras-binding domain of Byr2
PF12234	RAVE protein 1 C terminal
PF12768	Cortical protein marker for cell polarity
PF08169	RBB1NT (NUC162) domain
PF12338	Ribulose-1,5-bisphosphate carboxylase small subunit
PF02196	Raf-like Ras-binding domain
PF09457	FIP domain
PF06593	Raspberry bushy dwarf virus coat protein
PF02033	Ribosome-binding factor A
PF08081	RBM1CTR (NUC064) family
PF15519	linker between RRM2 and RRM3 domains in RBM39 protein
PF14752	Retinol binding protein receptor
PF05025	RbsD / FucU transport protein family
PF11464	Rabenosyn Rab binding domain
PF01858	Retinoblastoma-associated protein A domain
PF01857	Retinoblastoma-associated protein B domain
PF08934	Rb C-terminal domain
PF10657	Photosystem P840 reaction centre protein PscD
PF02341	RbcX protein
PF00415	Regulator of chromosome condensation (RCC1) repeat
PF13540	Regulator of chromosome condensation (RCC1) repeat
PF06405	Red chlorophyll catabolite reductase (RCC reductase)
PF04078	Cell differentiation family, Rcd1-like
PF12273	Chitin synthesis regulation, resistance to Congo red
PF09456	RcsC Alpha-Beta-Loop (ABL)
PF05177	RCSD region
PF14473	RD3 protein
PF06271	RDD family
PF04381	Putative exonuclease, RdgC
PF11002	RFPL defining motif (RDM)
PF05183	RNA dependent RNA polymerase
PF00680	RNA dependent RNA polymerase
PF00978	RNA dependent RNA polymerase
PF00998	Viral RNA dependent RNA polymerase
PF02123	Viral RNA-directed RNA-polymerase
PF07925	Reovirus RNA-dependent RNA polymerase lambda 3
PF09231	Rice dwarf virus p3
PF10262	Rdx family
PF11747	Killing trait
PF15165	Meiotic recombination protein REC114-like
PF00154	recA bacterial DNA recombination protein
PF11465	Natural killer cell receptor 2B4
PF11548	Protein-tyrosine phosphatase receptor IA-2
PF01030	Receptor L domain
PF07508	Recombinase
PF02565	Recombination protein O C terminal
PF11967	Recombination protein O N terminal
PF13114	RecO N terminal
PF06959	RecQ helicase protein-like 5 (RecQ5)
PF02132	RecR protein
PF03837	RecT family
PF03838	Recombination protein U
PF02631	RecX family
PF07964	Rec10 / Red1
PF08534	Redoxin
PF14759	Reductase C-terminal
PF07807	RED-like protein C-terminal region
PF07808	RED-like protein N-terminal region
PF02014	Reeler domain
PF05755	Rubber elongation factor protein (REF)
PF10715	Endoribonuclease RegB T4-bacteriophage encoded
PF11495	Archaeal transcriptional regulator TrmB
PF07494	Two component regulator propeller
PF02010	REJ domain
PF03432	Relaxase/Mobilisation nuclease domain
PF04607	Region found in RelA / SpoT proteins
PF04221	RelB antitoxin
PF12910	Antitoxin of toxin-antitoxin stability system N-terminal
PF12606	Tumour necrosis factor receptor superfamily member 19
PF03763	Remorin, C-terminal region
PF03766	Remorin, N-terminal region
PF07850	Renin receptor-like protein
PF08978	Reoviridae VP9
PF00979	Reovirus outer capsid protein, Sigma 3
PF06016	Reovirus core-spike protein lambda-2 (L2)
PF05993	Reovirus major virion structural protein Mu-1/Mu-1C (M2)
PF07781	Reovirus minor core protein Mu-2
PF06043	Reovirus P9-like family
PF01664	Reovirus viral attachment protein sigma 1
PF04582	Reovirus sigma C capsid protein
PF04057	Replication factor-A protein 1, N-terminal domain
PF08048	Tap RepA1 leader peptide
PF04796	Plasmid encoded RepA protein
PF06970	Replication initiator protein A (RepA) N-terminus
PF07506	RepB plasmid partitioning protein
PF10723	Replication regulatory protein RepB
PF06504	Replication protein C (RepC)
PF05732	Firmicute plasmid replication protein (RepL)
PF03090	Replicase family
PF13814	Replication-relaxation
PF11423	Regulatory protein Mnt
PF01421	Reprolysin (M12B) family zinc metalloprotease
PF13574	Metallo-peptidase family M12B Reprolysin-like
PF13582	Metallo-peptidase family M12B Reprolysin-like
PF13583	Metallo-peptidase family M12B Reprolysin-like
PF13688	Metallo-peptidase family M12
PF01446	Replication protein
PF01719	Plasmid replication protein
PF01051	Initiator Replication protein
PF05797	Yeast trans-acting factor (REP1/REP2)
PF08661	Replication factor A protein 3
PF08646	Replication factor-A C terminal domain
PF08542	Replication factor C C-terminal domain
PF08724	Rep protein catalytic domain like
PF06926	Putative replisome organiser protein C-terminus
PF02486	Replication initiation factor
PF14051	N-terminal domain of DPF2/REQ.
PF03248	Rer1 family
PF08808	RES domain
PF05140	ResB-like family
PF04851	Type III restriction enzyme, res subunit
PF06954	Resistin
PF00239	Resolvase, N terminal domain
PF14948	RESP18 domain
PF00072	Response regulator receiver domain
PF11407	Type II restriction enzyme MunI
PF11487	Type II restriction enzyme SfiI
PF02453	Reticulon
PF15449	Retinal protein
PF04527	Drosophila Retinin like protein
PF03732	Retrotransposon gag protein
PF02813	Retroviral M domain
PF10044	Retinal tissue protein
PF00424	REV protein (anti-repression trans-activator protein)
PF09545	AccI restriction endonuclease
PF09665	Type II restriction endonuclease (RE_Alw26IDE)
PF09491	AlwI restriction endonuclease
PF09499	ApaLI-like restriction endonuclease
PF09549	Bpu10I restriction endonuclease
PF09504	Bsp6I restriction endonuclease
PF09552	BstXI restriction endonuclease
PF09516	CfrBI restriction endonuclease
PF09517	Eco29kI restriction endonuclease
PF09553	Eco47II restriction endonuclease
PF14511	Type II restriction endonuclease EcoO109I
PF09554	HaeII restriction endonuclease
PF09556	HaeIII restriction endonuclease
PF09518	HindIII restriction endonuclease
PF09519	HindVP restriction endonuclease
PF09561	HpaII restriction endonuclease
PF09563	LlaJI restriction endonuclease
PF09562	LlaMI restriction endonuclease
PF09567	MamI restriction endonuclease
PF09568	MjaI restriction endonuclease
PF09564	NgoBV restriction endonuclease
PF09565	NgoFVII restriction endonuclease
PF09521	NgoPII restriction endonuclease
PF09522	R.Pab1 restriction endonuclease
PF09566	SacI restriction endonuclease
PF09569	ScaI restriction endonuclease
PF09570	SinI restriction endonuclease
PF09573	TaqI restriction endonuclease
PF09520	Type II restriction endonuclease, TdeIII
PF09572	XamI restriction endonuclease
PF09571	XcyI restriction endonuclease
PF00472	RF-1 domain
PF11109	Orexigenic neuropeptide Qrfp/P518
PF08519	Replication factor RFC1 C terminal domain
PF10489	Ret finger protein-like 3 antisense
PF04506	Rft protein
PF04589	RFX1 transcription activation region
PF14621	RFX5 DNA-binding domain
PF15289	Regulatory factor X-associated C-terminal binding domain
PF02257	RFX DNA-binding domain
PF15151	Response gene to complement 32 protein family
PF06534	Repulsive guidance molecule (RGM) C-terminus
PF06535	Repulsive guidance molecule (RGM) N-terminus
PF03214	Reversibly glycosylated polypeptide
PF08737	Rgp1
PF05045	Rhamnan synthesis protein F
PF00615	Regulator of G protein signaling domain
PF09128	Regulator of G protein signalling-like domain
PF06134	L-rhamnose isomerase (RhaA)
PF00974	Rhabdovirus spike glycoprotein
PF03342	Rhabdovirus M1 matrix protein (M1 polymerase-associated protein)
PF04785	Rhabdovirus matrix protein M2
PF03397	Rhabdovirus matrix protein
PF00945	Rhabdovirus nucleocapsid protein
PF03216	Rhabdovirus nucleoprotein
PF02484	Rhabdovirus Non-virion protein
PF06045	Rhamnogalacturonate lyase family
PF11316	Putative rhamnosyl transferase
PF06379	L-rhamnose-proton symport protein (RhaT)
PF00554	Rel homology domain (RHD)
PF05879	Root hair defective 3 GTP-binding protein (RHD3)
PF09284	Rhamnogalacturonase B, N-terminal
PF01402	Ribbon-helix-helix protein, copG family
PF03693	Uncharacterised protein family (UPF0156)
PF12651	Ribbon-helix-helix domain
PF13467	Ribbon-helix-helix domain
PF12721	RIP homotypic interaction motif
PF15319	RAD9, RAD1, HUS1-interacting nuclear orphan protein
PF00581	Rhodanese-like domain
PF11511	Intrinsic membrane protein PufX
PF10413	Amino terminal of the G-protein receptor rhodopsin
PF00620	RhoGAP domain
PF00621	RhoGEF domain
PF01694	Rhomboid family
PF12595	Rhomboid serine protease
PF08912	Rho Binding
PF02115	RHO protein GDP dissociation inhibitor
PF07498	Rho termination factor, N-terminal domain
PF07497	Rho termination factor, RNA-binding domain
PF03527	RHS protein
PF07999	Retrotransposon hot spot protein
PF05593	RHS Repeat
PF00073	picornavirus capsid protein
PF08428	Rib/alpha-like repeat
PF05914	RIB43A
PF01872	RibD C-terminal domain
PF00545	ribonuclease
PF00636	Ribonuclease III domain
PF00825	Ribonuclease P
PF00445	Ribonuclease T2 family
PF11469	Ribonuclease III
PF14622	Ribonuclease-III-like
PF06479	Ribonuclease 2-5A
PF01042	Endoribonuclease L-PSP
PF08584	Ribonuclease P 40kDa (Rpp40) subunit
PF08471	Class II vitamin B12-dependent ribonucleotide reductase
PF02867	Ribonucleotide reductase, barrel domain
PF00317	Ribonucleotide reductase, all-alpha domain
PF00268	Ribonucleotide reductase, small chain
PF04597	Ribophorin I
PF05817	Oligosaccharyltransferase subunit Ribophorin II
PF00428	60s Acidic ribosomal protein
PF00687	Ribosomal protein L1p/L10e family
PF00466	Ribosomal protein L10
PF00298	Ribosomal protein L11, RNA binding domain
PF03946	Ribosomal protein L11, N-terminal domain
PF00542	Ribosomal protein L7/L12 C-terminal domain
PF00572	Ribosomal protein L13
PF01294	Ribosomal protein L13e
PF00238	Ribosomal protein L14p/L23e
PF01929	Ribosomal protein L14
PF00827	Ribosomal L15
PF00252	Ribosomal protein L16p/L10e
PF01196	Ribosomal protein L17
PF01775	Ribosomal L18ae/LX protein domain
PF00828	Ribosomal protein L18e/L15
PF00861	Ribosomal L18p/L5e family
PF14204	Ribosomal L18 C-terminal region
PF01245	Ribosomal protein L19
PF01280	Ribosomal protein L19e
PF00181	Ribosomal Proteins L2, RNA binding domain
PF00453	Ribosomal protein L20
PF01157	Ribosomal protein L21e
PF00829	Ribosomal prokaryotic L21 protein
PF00237	Ribosomal protein L22p/L17e
PF01776	Ribosomal L22e protein family
PF00276	Ribosomal protein L23
PF03939	Ribosomal protein L23, N-terminal domain
PF01246	Ribosomal protein L24e
PF01386	Ribosomal L25p family
PF01016	Ribosomal L27 protein
PF01777	Ribosomal L27e protein family
PF00830	Ribosomal L28 family
PF01778	Ribosomal L28e protein family
PF00831	Ribosomal L29 protein
PF01779	Ribosomal L29e protein family
PF03947	Ribosomal Proteins L2, C-terminal domain
PF00297	Ribosomal protein L3
PF00327	Ribosomal protein L30p/L7e
PF08079	Ribosomal L30 N-terminal domain
PF01197	Ribosomal protein L31
PF01198	Ribosomal protein L31e
PF01655	Ribosomal protein L32
PF01783	Ribosomal L32p protein family
PF00471	Ribosomal protein L33
PF00468	Ribosomal protein L34
PF01199	Ribosomal protein L34e
PF01247	Ribosomal protein L35Ae
PF01632	Ribosomal protein L35
PF00444	Ribosomal protein L36
PF01158	Ribosomal protein L36e
PF08561	Mitochondrial ribosomal protein L37
PF01780	Ribosomal L37ae protein family
PF01907	Ribosomal protein L37e
PF01781	Ribosomal L38e protein family
PF00832	Ribosomal L39 protein
PF00573	Ribosomal protein L4/L1 family
PF01020	Ribosomal L40e family
PF05162	Ribosomal protein L41
PF00935	Ribosomal protein L44
PF00281	Ribosomal protein L5
PF10501	Ribosomal subunit 39S
PF00673	ribosomal L5P family C-terminus
PF00347	Ribosomal protein L6
PF01159	Ribosomal protein L6e
PF03868	Ribosomal protein L6, N-terminal domain
PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
PF03948	Ribosomal protein L9, C-terminal domain
PF01281	Ribosomal protein L9, N-terminal domain
PF00338	Ribosomal protein S10p/S20e
PF00411	Ribosomal protein S11
PF00416	Ribosomal protein S13/S18
PF08069	Ribosomal S13/S15 N-terminal domain
PF00253	Ribosomal protein S14p/S29e
PF00312	Ribosomal protein S15
PF00886	Ribosomal protein S16
PF00366	Ribosomal protein S17
PF00833	Ribosomal S17
PF01084	Ribosomal protein S18
PF00203	Ribosomal protein S19
PF01090	Ribosomal protein S19e
PF00318	Ribosomal protein S2
PF01649	Ribosomal protein S20
PF01165	Ribosomal protein S21
PF01249	Ribosomal protein S21e
PF08136	30S ribosomal protein subunit S22 family
PF01282	Ribosomal protein S24e
PF03297	S25 ribosomal protein
PF01283	Ribosomal protein S26e
PF01599	Ribosomal protein S27a
PF01667	Ribosomal protein S27
PF01200	Ribosomal protein S28e
PF04758	Ribosomal protein S30
PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
PF01015	Ribosomal S3Ae family
PF00189	Ribosomal protein S3, C-terminal domain
PF00163	Ribosomal protein S4/S9 N-terminal domain
PF00900	Ribosomal family S4e
PF11993	Ribosomal S4P (gammaproteobacterial)
PF00333	Ribosomal protein S5, N-terminal domain
PF03719	Ribosomal protein S5, C-terminal domain
PF01250	Ribosomal protein S6
PF01092	Ribosomal protein S6e
PF00177	Ribosomal protein S7p/S5e
PF01251	Ribosomal protein S7e
PF00410	Ribosomal protein S8
PF01201	Ribosomal protein S8e
PF00380	Ribosomal protein S9/S16
PF14693	Ribosomal protein TL5, C-terminal domain
PF00164	Ribosomal protein S12/S23
PF14374	60S ribosomal protein L4 C-terminal domain
PF00834	Ribulose-phosphate 3 epimerase family
PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
PF02267	ADP-ribosyl cyclase
PF05104	Ribosome receptor lysine/proline rich region
PF07064	RIC1
PF15361	Resistance to inhibitors of cholinesterase homologue 3
PF10165	Guanine nucleotide exchange factor synembryn
PF05062	RICH domain
PF14200	Ricin-type beta-trefoil lectin domain-like
PF00652	Ricin-type beta-trefoil lectin domain
PF05433	Glycine zipper 2TM domain
PF14666	Rapamycin-insensitive companion of mTOR, middle domain
PF14664	Rapamycin-insensitive companion of mTOR, N-term
PF14665	Rapamycin-insensitive companion of mTOR, phosphorylation-site
PF14668	Rapamycin-insensitive companion of mTOR, domain 5
PF00355	Rieske [2Fe-2S] domain
PF13806	Rieske-like [2Fe-2S] domain
PF12231	Rap1-interacting factor 1 N terminal
PF02009	Rifin/stevor family
PF11648	C-terminal domain of RIG-I
PF08454	RyR and IP3R Homology associated
PF02197	Regulatory subunit of type II PKA R-subunit
PF10522	RII binding domain
PF11461	Rab interacting lysosomal protein
PF08443	RimK-like ATP-grasp domain
PF01782	RimM N-terminal domain
PF06116	Transcriptional activator RinB
PF12906	RING-variant domain
PF00848	Ring hydroxylating alpha subunit (catalytic domain)
PF00866	Ring hydroxylating beta subunit
PF04437	RINT-1 / TIP-1 family
PF01163	RIO1 family
PF09202	Rio2, N-terminal
PF00161	Ribosome inactivating protein
PF14998	Transcription Regulator
PF08167	rRNA processing/ribosome biogenesis
PF11088	Glycoprotein encoding membrane proteins RL5A and RL6
PF14401	RimK-like ATPgrasp N-terminal domain
PF04068	Possible Fer4-like domain in RNase L inhibitor, RLI
PF10036	Putative carnitine deficiency-associated protein
PF13707	RloB-like protein
PF04957	Ribosome modulation factor
PF04321	RmlD substrate binding domain
PF07521	RNA-metabolising metallo-beta-lactamase
PF14996	Retinal Maintenance
PF02646	RmuC family
PF10443	RNA12 protein
PF00074	Pancreatic ribonuclease
PF09293	T4 RNase H, C terminal
PF10150	Ribonuclease E/G family
PF00075	RNase H
PF09468	Ydr279p protein family (RNase H2 complex component)
PF08615	Ribonuclease H2 non-catalytic subunit (Ylr154p-like)
PF01351	Ribonuclease HII
PF13482	RNase_H superfamily
PF01138	3' exoribonuclease family, domain 1
PF03725	3' exoribonuclease family, domain 2
PF01876	RNase P subunit p30
PF08228	RNase P subunit Pop3
PF01900	Rpp14/Pop5 family
PF00929	Exonuclease
PF11977	Zc3h12a-like Ribonuclease NYN domain
PF14626	Zc3h12a-like Ribonuclease NYN domain
PF08675	RNA binding domain
PF01877	RNA binding
PF10133	Predicted RNA-binding protein
PF03035	Calicivirus putative RNA polymerase/capsid protein
PF10258	PHAX RNA-binding domain
PF00910	RNA helicase
PF09414	RNA ligase
PF09511	RNA ligase
PF04252	Predicted SAM-dependent RNA methyltransferase
PF00940	DNA-dependent RNA polymerase
PF08203	Yeast RNA polymerase I subunit RPA14
PF08208	DNA-directed RNA polymerase I subunit RPA34.5
PF11705	DNA-directed RNA polymerase III subunit Rpc31
PF01000	RNA polymerase Rpb3/RpoA insert domain
PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
PF06870	A49-like RNA polymerase I associated factor
PF04090	RNA polymerase I specific initiation factor
PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
PF13656	RNA polymerase Rpb3/Rpb11 dimerisation domain
PF02150	RNA polymerases M/15 Kd subunit
PF01194	RNA polymerases N / 8 kDa subunit
PF08292	RNA polymerase III subunit Rpc25
PF06883	RNA polymerase I, Rpa2 specific domain
PF04997	RNA polymerase Rpb1, domain 1
PF00623	RNA polymerase Rpb1, domain 2
PF04983	RNA polymerase Rpb1, domain 3
PF05000	RNA polymerase Rpb1, domain 4
PF04998	RNA polymerase Rpb1, domain 5
PF04992	RNA polymerase Rpb1, domain 6
PF04990	RNA polymerase Rpb1, domain 7
PF05001	RNA polymerase Rpb1 C-terminal repeat
PF04563	RNA polymerase beta subunit
PF04561	RNA polymerase Rpb2, domain 2
PF04565	RNA polymerase Rpb2, domain 3
PF04566	RNA polymerase Rpb2, domain 4
PF10385	RNA polymerase beta subunit external 1 domain
PF04567	RNA polymerase Rpb2, domain 5
PF00562	RNA polymerase Rpb2, domain 6
PF04560	RNA polymerase Rpb2, domain 7
PF03874	RNA polymerase Rpb4
PF01191	RNA polymerase Rpb5, C-terminal domain
PF03871	RNA polymerase Rpb5, N-terminal domain
PF01192	RNA polymerase Rpb6
PF03870	RNA polymerase Rpb8
PF05158	RNA polymerase Rpc34 subunit
PF05132	RNA polymerase III RPC4
PF05645	RNA polymerase III subunit RPC82
PF12136	RNA polymerase Rpo13 subunit HTH domain
PF03431	RNA replicase, beta-chain
PF00773	RNB domain
PF02508	Rnf-Nqr subunit, membrane protein
PF15303	E3 ubiquitin-protein ligase Arkadia N-terminus
PF13375	RnfC Barrel sandwich hybrid domain
PF12647	RNHCP domain
PF14760	Rnk N-terminus
PF08591	Ribonucleotide reductase inhibitor
PF08343	Ribonucleotide reductase N-terminal
PF03259	Roadblock/LC7 domain
PF10135	Rod binding protein
PF10493	Rough deal protein C-terminal region
PF15201	Progressive rod-cone degeneration
PF07073	Modulator of Rho-dependent transcription termination (ROF)
PF10259	Rogdi leucine zipper containing protein
PF00480	ROK family
PF08067	ROKNT (NUC014) domain
PF02027	RolB/RolC glucosidase family
PF10247	Reactive mitochondrial oxygen species modulator 1
PF12334	Rickettsia outer membrane protein B
PF15035	Ciliary rootlet component, centrosome cohesion
PF06830	Root cap
PF01815	Rop protein
PF05082	Rop-like
PF10727	Rossmann-like domain
PF05443	ROS/MUCR transcriptional regulator protein
PF10681	Chaperone for protein-folding within the ER, fungal
PF00639	PPIC-type PPIASE domain
PF13145	PPIC-type PPIASE domain
PF13616	PPIC-type PPIASE domain
PF12289	Rotavirus VP1 structural protein
PF06929	Rotavirus VP3 protein
PF05868	Rotavirus major outer capsid protein VP7
PF00980	Rotavirus major capsid protein VP6
PF01525	Rotavirus NS26
PF02509	Rotavirus non-structural protein 35
PF00981	Rotavirus RNA-binding Protein 53 (NS53)
PF04866	Rotavirus non-structural protein 6
PF01665	Rotavirus non-structural protein NSP3
PF01452	Rotavirus non structural protein
PF05087	Rotavirus VP2 protein
PF06020	Drosophila roughex protein
PF08633	Rox3 mediator complex subunit
PF03428	Replication protein C N-terminal domain
PF11800	Replication protein C C-terminal region
PF12042	Tubuliform egg casing silk strands structural domain
PF10134	Replication initiator protein A
PF08620	RPAP1-like, C-terminal
PF08621	RPAP1-like, N-terminal
PF04181	Rtr1/RPAP2 family
PF13877	Potential Monad-binding region of RPAP3
PF08784	Replication protein A C terminal
PF14768	Replication protein A interacting C-terminal
PF14767	Replication protein A interacting middle
PF14766	Replication protein A interacting N-terminal
PF03055	Retinal pigment epithelial membrane protein
PF02755	RPEL repeat
PF08579	Mitochondrial ribonuclease P subunit (RPM2)
PF08375	Proteasome regulatory subunit C-terminal
PF10602	26S proteasome subunit RPN7
PF12415	Poxvirus DNA dependent RNA polymerase
PF12410	Poxvirus DNA dependent RNA polymerase 30kDa subunit
PF14700	DNA-directed RNA polymerase N-terminal
PF12328	Rpp20 subunit of nuclear RNase MRP and P
PF04032	RNAse P Rpr2/Rpp21/SNM1 subunit domain
PF13446	A repeated domain in UCH-protein
PF05659	Arabidopsis broad-spectrum mildew resistance protein RPW8
PF09382	RQC domain
PF06877	Regulator of ribonuclease activity B
PF01765	Ribosome recycling factor
PF02082	Transcriptional regulator
PF12614	Ribosome recycling factor
PF10378	Putative RRM domain
PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
PF04059	RNA recognition motif 2
PF08777	RNA binding motif
PF10598	RNA recognition motif of the spliceosomal PrP8
PF13893	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
PF14259	RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
PF15628	RRM in Demeter
PF05327	RNA polymerase I specific transcription initiation factor RRN3
PF10214	RNA polymerase I-specific transcription-initiation factor
PF11781	RNA polymerase I-specific transcription initiation factor Rrn7
PF10680	RNA polymerase I specific transcription initiation factor
PF00398	Ribosomal RNA adenine dimethylase
PF06962	Putative rRNA methylase
PF13234	rRNA-processing arch domain
PF08524	rRNA processing
PF15459	60S ribosome biogenesis protein Rrp14
PF07890	Rrp15p
PF12923	Ribosomal RNA-processing protein 7 (RRP7)
PF04939	Ribosome biogenesis regulatory protein (RRS1)
PF14239	RRXRR protein
PF06459	Ryanodine Receptor TM 4-6
PF08071	RS4NT (NUC023) domain
PF14615	Ribosome-assembly protein 3
PF14361	RsbT co-antagonist protein rsbRD N-terminal domain
PF08678	Rsbr N terminal
PF08673	Phosphoserine phosphatase RsbU, N-terminal domain
PF08586	RSC complex, Rsc14/Ldb7 subunit
PF07547	RSD-2 N-terminal domain
PF04353	Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
PF03873	Anti sigma-E protein RseA, C-terminal domain
PF03872	Anti sigma-E protein RseA, N-terminal domain
PF04246	Positive regulator of sigma(E), RseC/MucC
PF14876	Respiratory growth transcriptional regulator
PF12791	Anti-sigma factor N-terminus
PF10099	Anti-sigma-K factor rskA
PF08600	Rsm1-like
PF09243	Mitochondrial small ribosomal subunit Rsm22
PF04378	Ribosomal RNA small subunit methyltransferase D, RsmJ
PF13967	Late exocytosis, associated with Golgi transport
PF11757	Suppressor of RNA silencing P21-like
PF12174	RCD1-SRO-TAF4 (RST) plant domain
PF03113	Respiratory synctial virus non-structural protein NS2
PF04479	RTA1 like protein
PF06361	Rice tungro bacilliform virus P12 protein
PF06216	Rice tungro bacilliform virus P46 protein
PF01137	RNA 3'-terminal phosphate cyclase
PF14474	RTC4-like domain
PF01139	tRNA-splicing ligase RtcB
PF06956	Regulator of RNA terminal phosphate cyclase
PF05189	RNA 3'-terminal phosphate cyclase (RTC), insert domain
PF09357	RteC protein
PF04641	Rtf2 RING-finger
PF02334	Replication terminator protein
PF07809	RTP801 C-terminal region
PF09510	Rtt102p-like transcription regulator protein
PF08512	Histone chaperone Rttp106-like
PF14726	Rotatin, an armadillo repeat protein, centriole functioning
PF02382	RTX N-terminal domain
PF07634	RtxA repeat
PF08339	RTX C-terminal domain
PF05750	Rubella capsid protein
PF05748	Rubella membrane glycoprotein E1
PF05749	Rubella membrane glycoprotein E2
PF09273	Rubisco LSMT substrate-binding
PF00016	Ribulose bisphosphate carboxylase large chain, catalytic domain
PF02788	Ribulose bisphosphate carboxylase large chain, N-terminal domain
PF00101	Ribulose bisphosphate carboxylase, small chain
PF12601	Rubivirus non-structural protein
PF00301	Rubredoxin
PF02915	Rubrerythrin
PF02759	RUN domain
PF00853	Runt domain
PF08504	Runx inhibition domain
PF05866	Endodeoxyribonuclease RusA
PF07499	RuvA, C-terminal domain
PF01330	RuvA N terminal domain
PF05491	Holliday junction DNA helicase ruvB C-terminus
PF05496	Holliday junction DNA helicase ruvB N-terminus
PF02075	Crossover junction endodeoxyribonuclease RuvC
PF00665	Integrase core domain
PF13333	Integrase core domain
PF13683	Integrase core domain
PF00077	Retroviral aspartyl protease
PF08284	Retroviral aspartyl protease
PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
PF07727	Reverse transcriptase (RNA-dependent DNA polymerase)
PF13456	Reverse transcriptase-like
PF06815	Reverse transcriptase connection domain
PF13655	N-terminal domain of reverse transcriptase
PF06817	Reverse transcriptase thumb domain
PF05773	RWD domain
PF02042	RWP-RK domain
PF08595	RXT2-like, N-terminal
PF08642	Histone deacetylation protein Rxt3
PF01365	RIH domain
PF02026	RyR domain
PF06085	Lipoprotein Rz1 precursor
PF05526	Rhodococcus equi virulence-associated protein
PF02773	S-adenosylmethionine synthetase, C-terminal domain
PF02772	S-adenosylmethionine synthetase, central domain
PF00438	S-adenosylmethionine synthetase, N-terminal domain
PF05756	S-antigen protein
PF07752	S-layer protein
PF02574	Homocysteine S-methyltransferase
PF00575	S1 RNA binding domain
PF14444	S1-like
PF02265	S1/P1 Nuclease
PF15427	S100P-binding protein
PF03501	Plectin/S10 domain
PF06756	Chorion protein S19 C-terminal
PF04689	DNA binding protein S1FA
PF13509	S1 domain
PF01479	S4 domain
PF07422	Sexual stage antigen s48/45 domain
PF13275	S4 domain
PF05116	Sucrose-6F-phosphate phosphohydrolase
PF08472	Sucrose-6-phosphate phosphohydrolase C-terminal
PF00277	Serum amyloid A protein
PF04382	SAB domain
PF12209	Leucine permease transcriptional regulator helical domain
PF03399	SAC3/GANP/Nin1/mts3/eIF-3 p25 family
PF03435	Saccharopine dehydrogenase
PF04455	LOR/SDH bifunctional enzyme conserved region
PF07738	Sad1 / UNC-like C-terminal
PF02182	SAD/SRA domain
PF08573	DNA repair protein endonuclease SAE2/CtIP C-terminus
PF08666	SAF domain
PF09460	Saf-pilin pilus formation protein
PF13144	SAF-like
PF04092	SRS domain
PF12767	Transcriptional regulator of RNA polII, SAGA, subunit
PF01259	SAICAR synthetase
PF12115	Salivary protein of 15kDa inhibits CD4+ T cell activation
PF09506	Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase)
PF05924	SAMP Motif
PF00536	SAM domain (Sterile alpha motif)
PF07647	SAM domain (Sterile alpha motif)
PF01887	S-adenosyl-l-methionine hydroxide adenosyltransferase
PF01536	Adenosylmethionine decarboxylase
PF04445	Putative SAM-dependent methyltransferase
PF02198	Sterile alpha motif (SAM)/Pointed domain
PF01342	SAND domain
PF09133	SANTA (SANT Associated)
PF02037	SAP domain
PF06487	Sin3 associated polypeptide p18 (SAP18)
PF15476	Histone deacetylase complex subunit SAP25
PF13867	Sin3 binding region of histone deacetylase complex subunit SAP30
PF02199	Saposin A-type domain
PF05184	Saposin-like type B, region 1
PF03489	Saposin-like type B, region 2
PF07277	SapC
PF04499	SIT4 phosphatase-associated protein
PF03058	Sar8.2 family
PF11409	Smad anchor for receptor activation (SARA)
PF04790	Sarcoglycan complex subunit protein
PF05510	Sarcoglycan alpha/epsilon
PF05366	Sarcolipin
PF15385	Specifically androgen-regulated gene protein
PF12133	Open reading frame 6 from SARS coronavirus
PF12383	Severe acute respiratory syndrome coronavirus 3b protein
PF09399	SARS lipid binding protein
PF08779	SARS coronavirus X4 like
PF03343	SART-1 family
PF09368	Sas10 C-terminal domain
PF04000	Sas10/Utp3/C1D family
PF15460	Something about silencing, SAS, complex subunit 4
PF00269	Small, acid-soluble spore proteins, alpha/beta type
PF04259	Small, acid-soluble spore protein, gamma-type
PF15160	Spermatogenesis-associated serine-rich protein 1
PF06426	Serine acetyltransferase, N-terminal
PF11561	Single strand annealing-weakened 1
PF10260	Uncharacterized conserved domain (SAYSvFN)
PF06739	Beta-propeller repeat
PF13558	Putative exonuclease SbcCD, C subunit
PF12320	Type 5 capsule protein repressor C-terminal domain
PF01172	Shwachman-Bodian-Diamond syndrome (SBDS) protein
PF09377	SBDS protein C-terminal domain
PF01758	Sodium Bile acid symporter family
PF12335	Myotubularin protein
PF11621	C3 binding domain 4 of IgG-bind protein SBI
PF05992	SbmA/BacA-like family
PF03110	SBP domain
PF05694	56kDa selenium binding protein (SBP56)
PF01547	Bacterial extracellular solute-binding protein
PF07596	Protein of unknown function (DUF1559)
PF13531	Bacterial extracellular solute-binding protein
PF00497	Bacterial extracellular solute-binding proteins, family 3
PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
PF13343	Bacterial extracellular solute-binding protein
PF03480	Bacterial extracellular solute-binding protein, family 7
PF13416	Bacterial extracellular solute-binding protein
PF08313	SCA7, zinc-binding domain
PF11418	Phi29 scaffolding protein
PF04144	SCAMP family
PF02023	SCAN domain
PF04405	Domain of Unknown function (DUF542)
PF02404	Stem cell factor
PF02667	Short chain fatty acid transporter
PF04486	SchA/CurD like domain
PF10148	Schwannomin-interacting protein 1
PF15050	SCIMP protein
PF05463	Sclerostin (SOST)
PF10384	Centromere protein Scm3
PF02630	SCO1/SenC
PF05483	Synaptonemal complex protein 1 (SCP-1)
PF14428	SCP1.201-like deaminase
PF02036	SCP-2 sterol transfer family
PF13530	Sterol carrier protein domain
PF02616	ScpA/B protein
PF05229	Spore Coat Protein U domain
PF03803	Scramblase
PF15224	Scrapie-responsive protein 1
PF06876	Plant self-incompatibility response (SCRL) protein
PF10261	Inositol phospholipid synthesis and fat-storage-inducing TM
PF02982	Scytalone dehydratase
PF08970	Sporulation inhibitor A
PF05285	SDA1
PF00375	Sodium:dicarboxylate symporter family
PF03937	Flavinator of succinate dehydrogenase
PF03313	Serine dehydratase alpha chain
PF03315	Serine dehydratase beta chain
PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
PF01972	Serine dehydrogenase proteinase
PF06977	SdiA-regulated
PF13630	SdpI/YhfL protein family
PF12278	Sex determination protein N terminal
PF10425	C-terminus of bacterial fibrinogen-binding adhesin
PF08598	Sds3-like
PF08491	Squalene epoxidase
PF12390	Selenocysteine synthase N terminal
PF01390	SEA domain
PF07322	Seadornavirus Vp10
PF07407	Seadornavirus VP6 protein
PF07387	Seadornavirus VP7
PF15432	Accessory Sec secretory system ASP3
PF02810	SEC-C motif
PF00995	Sec1 family
PF07393	Exocyst complex component Sec10
PF04091	Exocyst complex subunit Sec15-like
PF12932	Vesicle coat trafficking protein Sec16 mid-region
PF12931	Sec23-binding domain of Sec16
PF12935	Vesicle coat trafficking protein Sec16 N-terminus
PF03908	Sec20
PF08033	Sec23/Sec24 beta-sandwich domain
PF04815	Sec23/Sec24 helical domain
PF04811	Sec23/Sec24 trunk domain
PF06428	GDP/GTP exchange factor Sec2p
PF15277	Exocyst complex component SEC3 N-terminal PIP2 binding PH
PF11549	Protein transport protein SEC31
PF04136	Sec34-like family
PF08314	Secretory pathway protein Sec39
PF09763	Exocyst complex component Sec3
PF15278	Sec3 exocyst complex subunit
PF15469	Exocyst complex component Sec5
PF06046	Exocyst complex component Sec6
PF03911	Sec61beta family
PF03839	Translocation protein Sec62
PF02889	Sec63 Brl domain
PF09802	Preprotein translocase subunit Sec66
PF01369	Sec7 domain
PF12783	Guanine nucleotide exchange factor in Golgi transport N-terminal
PF04048	Sec8 exocyst complex component specific domain
PF07517	SecA DEAD-like domain
PF01043	SecA preprotein cross-linking domain
PF07516	SecA Wing and Scaffold domain
PF02556	Preprotein translocase subunit SecB
PF13721	SecD export protein N-terminal TM region
PF02355	Protein export membrane protein
PF00584	SecE/Sec61-gamma subunits of protein translocation complex
PF03840	Preprotein translocase SecG subunit
PF05364	Salmonella type III secretion SopE effector N-terminus
PF06558	Secretion monitor precursor protein (SecM)
PF00263	Bacterial type II and III secretion system protein
PF03958	Bacterial type II/III secretion system short domain
PF07655	Secretin N-terminal domain
PF05281	Neuroendocrine protein 7B2 precursor (Secretogranin V)
PF04856	Securin sister-chromatid separation inhibitor
PF00344	SecY translocase
PF07549	SecD/SecF GG Motif
PF11416	Integral membrane protein Sed5p
PF04628	Sedlin, N-terminal conserved region
PF14797	Serine-rich region of AP3B1, clathrin-adaptor complex
PF15357	Psoriasis susceptibility 1 candidate 1
PF06443	SEF14-like adhesin
PF08357	SEFIR domain
PF06775	Putative adipose-regulatory protein (Seipin)
PF08238	Sel1 repeat
PF03841	L-seryl-tRNA selenium transferase
PF09105	Elongation factor SelB, winged helix
PF09106	Elongation factor SelB, winged helix
PF09107	Elongation factor SelB, winged helix
PF11524	Selenium binding protein
PF06936	Selenoprotein S (SelS)
PF05938	Plant self-incompatibility protein S1
PF04593	Selenoprotein P, C terminal region
PF04592	Selenoprotein P, N terminal region
PF01641	SelR domain
PF01403	Sema domain
PF05474	Semenogelin
PF01118	Semialdehyde dehydrogenase, NAD binding domain
PF02774	Semialdehyde dehydrogenase, dimerisation domain
PF09631	Sen15 protein
PF12726	SEN1 N terminal
PF06911	Senescence-associated protein
PF04520	Senescence regulator
PF13796	Putative sensor
PF13755	Sensor N-terminal transmembrane domain
PF14577	Sieve element occlusion C-terminus
PF14576	Sieve element occlusion N-terminus
PF08059	SEP domain
PF08806	Sep15/SelM redox domain
PF06622	SepQ protein
PF00735	Septin
PF13845	Septum formation
PF06066	SepZ
PF03925	SeqA protein
PF05482	Serendipity locus alpha protein (SRY-A)
PF04360	Serglycin
PF06873	Cell surface immobilisation antigen SerH
PF03348	Serine incorporator (Serinc)
PF08824	Serine rich protein interaction domain
PF03383	Caenorhabditis serpentine receptor-like protein, class xa
PF00079	Serpin (serine protease inhibitor)
PF05540	Serpulina hyodysenteriae variable surface protein
PF06031	SERTA motif
PF00273	Serum albumin family
PF02403	Seryl-tRNA synthetase N-terminal domain
PF06821	Serine hydrolase
PF00856	SET domain
PF11767	Histone lysine methyltransferase SET associated
PF08138	Sex peptide (SP) family
PF06705	SF-assemblin/beta giardin
PF12108	Splicing factor SF3a60 binding domain
PF08920	Splicing factor 3B subunit 1
PF07189	Splicing factor 3B subunit 10 (SF3b10)
PF08457	Sfi1 spindle body protein
PF10638	Spindle body associated protein C-terminus
PF03749	Sugar fermentation stimulation protein
PF15210	Surfactant-associated protein 2
PF08209	Sgf11 (transcriptional regulation protein)
PF15467	Secretogranin-3
PF08450	SMP-30/Gluconolaconase/LRE-like region
PF12793	Sugar transport-related sRNA regulator N-term
PF05002	SGS domain
PF07093	SGT1 protein
PF01445	Viral small hydrophobic protein
PF00017	SH2 domain
PF14633	SH2 domain
PF04908	SH3-binding, glutamic acid-rich protein
PF05276	SH3 domain-binding protein 5 (SH3BP5)
PF00018	SH3 domain
PF07653	Variant SH3 domain
PF08239	Bacterial SH3 domain
PF06347	Bacterial SH3 domain
PF08460	Bacterial SH3 domain
PF12913	SH3 domain of the SH3b1 type
PF12914	SH3 domain of SH3b2 type
PF13457	SH3-like domain
PF14604	Variant SH3 domain
PF14999	Shadow of prion protein, neuroprotective
PF11601	Shal-type voltage-gated potassium channels
PF03983	SLA1 homology domain 1, SHD1
PF11435	RNA binding protein She2p
PF05546	She9 / Mdm33 family
PF06128	Shigella flexneri OspC protein
PF01488	Shikimate / quinate 5-dehydrogenase
PF08501	Shikimate dehydrogenase substrate binding domain
PF07004	Sperm-tail PG-rich repeat
PF13908	Wnt and FGF inhibitory regulator
PF01549	ShK domain-like
PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
PF00464	Serine hydroxymethyltransferase
PF10516	SHNi-TPR
PF09851	Short C-terminal domain
PF03579	Small hydrophobic protein
PF04925	SHQ1 protein
PF08229	ER membrane protein SH3
PF02491	SHS2 domain inserted in FTSA
PF03876	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
PF04917	Bacterial shufflon protein, N-terminal constant region
PF07557	Shugoshin C terminus
PF07558	Shugoshin N-terminal coiled-coil region
PF09032	Siah interacting protein, N terminal
PF09264	Vibrio cholerae sialidase, lectin insertion
PF02973	Sialidase, N-terminal domain
PF12135	Sialidase enzyme penultimate C terminal domain
PF03482	sic protein
PF12887	SICA extracellular alpha domain
PF12878	SICA extracellular beta domain
PF12879	SICA C-terminal inner membrane domain
PF09119	SicP binding
PF11778	Septation initiation
PF13965	dsRNA-gated channel SID-1
PF12252	Dot/Icm substrate protein
PF14163	Superinfection exclusion protein B
PF06767	Sif protein
PF00158	Sigma-54 interaction domain
PF14532	Sigma-54 interaction domain
PF00309	Sigma-54 factor, Activator interacting domain (AID)
PF04963	Sigma-54 factor, core binding domain
PF04552	Sigma-54, DNA binding domain
PF07638	ECF sigma factor
PF04546	Sigma-70, non-essential region
PF03979	Sigma-70 factor, region 1.1
PF00140	Sigma-70 factor, region 1.2
PF04542	Sigma-70 region 2
PF04539	Sigma-70 region 3
PF04545	Sigma-70, region 4
PF08281	Sigma-70, region 4
PF02454	Sigma 1s protein
PF03084	Reoviral Sigma1/Sigma2 family
PF13791	Sigma factor regulator C-terminal
PF13800	Sigma factor regulator N-terminal
PF03842	Silicon transporter
PF04402	Protein of unknown function (DUF541)
PF06621	Single-minded protein C-terminus
PF05422	Stress-activated map kinase interacting protein 1 (SIN1)
PF08295	Sin3 family co-repressor
PF03145	Seven in absentia protein family
PF08671	Anti-repressor SinI
PF04801	Sin-like protein conserved region
PF04954	Siderophore-interacting protein
PF04938	Survival motor neuron (SMN) interacting protein 1 (SIP1)
PF09052	Salmonella invasion protein A
PF05565	Siphovirus Gp157
PF14594	Siphovirus ReqiPepy6 Gp37-like protein
PF05709	Phage tail protein
PF11603	Regulatory protein Sir1
PF02146	Sir2 family
PF13289	SIR2-like domain
PF04247	Invasion gene expression up-regulator, SirB
PF14823	Sirohaem biosynthesis protein C-terminal
PF14824	Sirohaem biosynthesis protein central
PF01380	SIS domain
PF13580	SIS domain
PF15330	SHP2-interacting transmembrane adaptor protein, SIT
PF05458	Cd27 binding protein (Siva)
PF08693	Transmembrane alpha-helix domain
PF01202	Shikimate kinase
PF02731	SKIP/SNW domain
PF02437	SKI/SNO/DAC family
PF03935	Beta-glucan synthesis-associated protein (SKN1)
PF01466	Skp1 family, dimerisation domain
PF03931	Skp1 family, tetramerisation domain
PF03530	Calcium-activated SK potassium channel
PF03595	Voltage-dependent anion channel
PF15301	SLAIN motif-containing family
PF06214	Signaling lymphocytic activation molecule (SLAM) protein
PF03217	Bacterial surface layer protein
PF05889	Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)
PF10531	SLBB domain
PF15247	Histone RNA hairpin-binding protein RNA-binding domain
PF08639	DNA replication regulator SLD3
PF05916	GINS complex protein
PF07620	SLEI
PF00395	S-layer homology domain
PF09111	SLIDE
PF03843	Outer membrane lipoprotein Slp family
PF07333	S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP)
PF14611	Mitochondrial inner-membrane-bound regulator
PF01464	Transglycosylase SLT domain
PF13406	Transglycosylase SLT domain
PF02258	Shiga-like toxin beta subunit
PF14718	Soluble lytic murein transglycosylase L domain
PF11708	Pre-mRNA splicing Prp18-interacting factor
PF09494	Slx4 endonuclease
PF15341	Ribosome biogenesis protein SLX9
PF12485	Lymphocyte signaling adaptor protein
PF04102	SlyX
PF14438	Ataxin 2 SM domain
PF09057	Second Mitochondria-derived Activator of Caspases
PF15477	Small acidic protein family
PF06470	SMC proteins Flexible Hinge Domain
PF02463	RecF/RecN/SMC N terminal domain
PF07574	Nse1 non-SMC component of SMC5-6 complex
PF03467	Smg-4/UPF3 family
PF09346	SMI1 / KNR4 family (SUKH-1)
PF04802	Component of IIS longevity pathway SMK-1
PF06003	Survival motor neuron protein (SMN)
PF12510	Smoothelin cytoskeleton protein
PF04927	Seed maturation protein
PF04355	SmpA / OmlA family
PF01668	SmpB protein
PF10144	Bacterial virulence factor haemolysin
PF01713	Smr domain
PF15181	Spermatid-specific manchette-related protein 1
PF06695	Putative small multi-drug export protein
PF14619	Snf2-ATP coupling, chromatin remodelling complex
PF14938	Soluble NSF attachment protein, SNAP
PF00835	SNAP-25 family
PF15497	snRNA-activating protein complex subunit 19, SNAPc subunit 19
PF11035	Small nuclear RNA activating complex subunit 2-like
PF09808	Small nuclear RNA activating complex (SNAPc), subunit SNAP43
PF14712	Snapin/Pallidin
PF05739	SNARE domain
PF09335	SNARE associated Golgi protein
PF00565	Staphylococcal nuclease homologue
PF00209	Sodium:neurotransmitter symporter family
PF08455	Bacterial SNF2 helicase associated
PF00176	SNF2 family N-terminal domain
PF04855	SNF5 / SMARCB1 / INI1
PF03357	Snf7
PF09051	Stannin cytoplasmic
PF09050	Stannin unstructured linker
PF09049	Stannin transmembrane
PF01174	SNO glutamine amidotransferase family
PF07366	SnoaL-like polyketide cyclase
PF12680	SnoaL-like domain
PF13474	SnoaL-like domain
PF13577	SnoaL-like domain
PF07192	SNURF/RPN4 protein
PF11538	Snurportin1
PF15279	Sine oculis-binding protein
PF12610	Suppressor of cytokine signalling
PF07525	SOCS box
PF00080	Copper/zinc superoxide dismutase (SODC)
PF02777	Iron/manganese superoxide dismutases, C-terminal domain
PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
PF09055	Nickel-containing superoxide dismutase
PF04158	Sof1-like domain
PF10428	RAM signalling pathway protein
PF03619	Organic solute transporter Ostalpha
PF01033	Somatomedin B domain
PF03002	Somatostatin/Cortistatin family
PF13981	SopA-like central domain
PF13979	SopA-like catalytic domain
PF11047	Salmonella outer protein D
PF07487	SopE GEF domain
PF07682	Sulphur oxygenase reductase
PF02208	Sorbin homologous domain
PF09666	Sororin protein
PF04203	Sortase family
PF03700	Sorting nexin, N-terminal domain
PF01680	SOR/SNZ family
PF04832	SOUL heme-binding protein
PF04267	Sarcosine oxidase, delta subunit family
PF06525	Sulfocyanin (SoxE)
PF04268	Sarcosine oxidase, gamma subunit family
PF12336	SOX transcription factor
PF13501	Sulfur oxidation protein SoxY
PF08770	Sulphur oxidation protein SoxZ
PF12067	Sox C-terminal transactivation domain
PF12444	Sox developmental protein N terminal
PF14313	N-terminal region of Paramyxovirinae phosphoprotein (P)
PF03172	Sp100 domain
PF03014	Structural protein 2
PF07354	Zona-pellucida-binding protein (Sp38)
PF08616	Stabilization of polarity axis
PF14028	SpaB C-terminal domain
PF15307	Sperm acrosome-associated protein 7
PF02090	Salmonella surface presentation of antigen gene type M protein
PF02510	Surface presentation of antigens protein
PF07458	Sperm protein associated with nucleus, mapped to X chromosome
PF10591	Secreted protein acidic and rich in cysteine Ca binding region
PF13186	Iron-sulfur cluster-binding domain
PF15212	Spermatogenesis-associated protein 19, mitochondrial
PF15175	Spermatogenesis-associated protein 24
PF15218	Spermatogenesis-associated protein 25
PF14909	Spermatogenesis-assoc protein 6
PF14649	Spatacsin C-terminus
PF15256	SPATIAL
PF07780	Spb1 C-terminal domain
PF06645	Microsomal signal peptidase 12 kDa subunit (SPC12)
PF04573	Signal peptidase subunit
PF08286	Spc24 subunit of Ndc80
PF06703	Microsomal signal peptidase 25 kDa subunit (SPC25)
PF11544	Spindle pole body component Spc42p
PF08317	Spc7 kinetochore protein
PF15577	Spc7_C2
PF15402	N-terminus of kinetochore NMS complex subunit Spc7
PF04130	Spc97 / Spc98 family
PF05122	Mobile element transfer protein
PF03771	Domain of unknown function (DUF317)
PF10136	Site-specific recombinase
PF00435	Spectrin repeat
PF15059	Speriolin C-terminus
PF15058	Speriolin N terminus
PF01564	Spermine/spermidine synthase
PF08250	Sperm-activating peptides
PF05324	Sperm antigen HE2
PF15171	Neuropeptide secretory protein family, NPQ, spexin
PF14764	AP-5 complex subunit, vesicle trafficking
PF05541	Entomopoxvirus spheroidin protein
PF12138	Spherulation-specific family 4
PF11260	Major ampullate spidroin 1 and 2
PF09408	Spike receptor binding domain
PF02513	Spin/Ssty Family
PF08234	Chromosome segregation protein Spc25
PF05215	Spiralin
PF04435	Domain of unknown function (DUF545)
PF11132	Transcriptional regulator protein (SplA)
PF08769	Sporulation initiation factor Spo0A C terminal
PF07070	SpoOM protein
PF03533	SPO11 homologue
PF05032	Spo12 family
PF08631	Meiosis protein SPO22/ZIP4 like
PF03907	Spo7-like protein
PF15407	Sporulation protein family 7
PF01052	Surface presentation of antigens (SPOA)
PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
PF14682	Sporulation initiation phospho-transferase B, C-terminal
PF07744	SPOC domain
PF11964	SpoIIAA-like
PF08486	Stage II sporulation protein
PF07228	Stage II sporulation protein E (SpoIIE)
PF06686	Stage III sporulation protein AC/AD protein family
PF12685	SpoIIIAH-like protein
PF12116	Stage III sporulation protein D
PF07454	Stage II sporulation protein P (SpoIIP)
PF14171	Toxin SpoIISA, type II toxin-antitoxin system
PF14185	Antitoxin SpoIISB, type II toxin-antitoxin system
PF06468	Spondin_N
PF09388	Spo0E like sporulation regulatory protein
PF05036	Sporulation related domain
PF11122	Inner spore coat protein D
PF10612	Spore coat protein Z
PF14153	Spore coat protein CotO
PF05504	Spore germination B3/ GerAC like, C-terminal
PF09671	Spore coat protein (Spore_GerQ)
PF09548	Stage III sporulation protein AB (spore_III_AB)
PF09546	Stage III sporulation protein AE (spore_III_AE)
PF09581	Stage III sporulation protein AF (Spore_III_AF)
PF09551	Stage II sporulation protein R (spore_II_R)
PF09547	Stage IV sporulation protein A (spore_IV_A)
PF03845	Spore germination protein
PF09575	Small spore protein J (Spore_SspJ)
PF09578	Spore cortex protein YabQ (Spore_YabQ)
PF14147	Sporulation protein YhaL
PF09580	Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ)
PF09577	Sporulation protein YpjB (SpoYpjB)
PF09579	Sporulation protein YtfJ (Spore_YtfJ)
PF14034	Sporulation protein YtrH
PF09560	Sporulation protein YunB (Spo_YunB)
PF05642	Sporozoite P67 surface antigen
PF12164	Stage V sporulation protein AA
PF07084	Thyroid hormone-inducible hepatic protein Spot 14
PF02590	Predicted SPOUT methyltransferase
PF14419	AF2226-like SPOUT RNA Methylase fused to THUMP
PF00588	SpoU rRNA Methylase family
PF12105	SpoU, rRNA methylase, C-terminal
PF08032	RNA 2'-O ribose methyltransferase substrate binding
PF08183	Stage V sporulation protein family
PF03862	SpoVA protein
PF13782	Stage V sporulation protein AB
PF07451	Stage V sporulation protein AD (SpoVAD)
PF14097	Stage V sporulation protein AE1
PF04026	SpoVG
PF14069	Stage VI sporulation protein F
PF04293	SpoVR like protein
PF04232	Stage V sporulation protein S (SpoVS)
PF07448	Secreted phosphoprotein 24 (Spp-24)
PF15356	Psoriasis susceptibility locus 2
PF12118	SprA-related family
PF14349	Motility related/secretion protein
PF13573	SprB repeat
PF05210	Sprouty protein (Spry)
PF14820	Small proline-rich 2
PF10263	SprT-like family
PF00622	SPRY domain
PF08644	FACT complex subunit (SPT16/CDC68)
PF08243	SPT2 chromatin protein
PF12090	Spt20 family
PF06093	Spt4/RpoE2 zinc finger
PF03439	Early transcription elongation factor of RNA pol II, NGN section
PF11942	Spt5 transcription elongation factor, acidic N-terminal
PF14632	Acidic N-terminal SPT6
PF03539	Spumavirus aspartic protease (A9)
PF03534	Salmonella virulence plasmid 65kDa B protein
PF05563	Salmonella plasmid virulence protein SpvD
PF03779	SPW repeat
PF03105	SPX domain
PF11357	Cell cycle regulatory protein
PF08999	Surfactant protein C, N terminal propeptide
PF00494	Squalene/phytoene synthase
PF00299	Squash family serine protease inhibitor
PF10500	Nuclear RNA-splicing-associated protein
PF07304	Steroid receptor RNA activator (SRA1)
PF08832	Steroid receptor coactivator
PF00530	Scavenger receptor cysteine-rich domain
PF15494	Scavenger receptor cysteine-rich domain
PF03125	C. elegans Sre G protein-coupled chemoreceptor
PF00319	SRF-type transcription factor (DNA-binding and dimerisation domain)
PF07520	Virulence factor SrfB
PF02118	Srg family chemoreceptor
PF08236	SRI (Set2 Rpb1 interacting) domain
PF04086	Signal recognition particle, alpha subunit, N-terminal
PF02290	Signal recognition particle 14kD protein
PF01922	SRP19 protein
PF00660	Seripauperin and TIP1 family
PF05022	SRP40, C-terminal domain
PF00448	SRP54-type protein, GTPase domain
PF02881	SRP54-type protein, helical bundle domain
PF08492	SRP72 RNA-binding domain
PF05486	Signal recognition particle 9 kDa protein (SRP9)
PF09439	Signal recognition particle receptor beta subunit
PF02978	Signal peptide binding domain
PF07709	Seven Residue Repeat
PF07985	SRR1
PF15230	Serine/arginine repetitive matrix protein C-terminus
PF09201	SRX
PF00436	Single-strand binding protein family
PF10141	Single-strand DNA-specific exonuclease, C terminal domain
PF04503	Single-stranded DNA binding protein, SSDP
PF07179	SseB protein N-terminal domain
PF14581	SseB protein C-terminal domain
PF04888	Secretion system effector C (SseC) like family
PF00474	Sodium:solute symporter family
PF14723	Sperm-specific antigen 2 C-terminus
PF04686	Streptomyces sporulation and cell division protein, SsgA
PF00720	Subtilisin inhibitor-like
PF04056	Ssl1-like
PF06933	Special lobe-specific silk protein SSP160
PF04386	Stringent starvation protein B
PF08141	Small acid-soluble spore protein H family
PF14098	Small, acid-soluble spore protein I
PF08176	Small acid-soluble spore protein K family
PF08177	Small acid-soluble spore protein N family
PF08175	Small acid-soluble spore protein O family
PF08179	Small acid-soluble spore protein P family
PF03531	Structure-specific recognition protein (SSRP1)
PF04722	Ssu72-like protein
PF11966	Fibronectin-binding repeat
PF07935	ORF D-335-like protein
PF09514	SSXRD motif
PF05030	SSXT protein (N-terminal region)
PF04184	ST7 protein
PF08514	STAG domain
PF03298	Stanniocalcin family
PF14731	Staphopain proregion
PF09022	Staphostatin A
PF09023	Staphostatin B
PF04022	Staphylocoagulase repeat
PF02821	Staphylokinase/Streptokinase family
PF05480	Staphylococcus haemolytic protein
PF01123	Staphylococcal/Streptococcal toxin, OB-fold domain
PF02876	Staphylococcal/Streptococcal toxin, beta-grasp domain
PF01852	START domain
PF01740	STAS domain
PF13466	STAS domain
PF12162	STAT1 TAZ2 binding domain
PF12188	Signal transducer and activator of transcription 2 C terminal
PF14596	STAT6 C-terminal
PF03875	Statherin
PF00836	Stathmin family
PF01017	STAT protein, all-alpha domain
PF02864	STAT protein, DNA binding domain
PF02865	STAT protein, protein interaction domain
PF12638	Staygreen protein
PF10330	Putative Sin3 binding protein
PF06406	StbA protein
PF09075	Heat-stable enterotoxin B, secretory
PF12898	Stc1 domain
PF02200	STE like transcription factor
PF02116	Fungal pheromone mating factor STE2 GPCR
PF02076	Pheromone A receptor
PF11610	Scaffold protein Ste5-Fus5 binding region
PF09235	Ste50p, sterile alpha motif
PF12194	Protein kinase Fus3-binding
PF03015	Male sterility protein
PF02544	3-oxo-5-alpha-steroid 4-dehydrogenase
PF12349	Sterol-sensing domain of SREBP cleavage-activation
PF08498	Sterol methyltransferase C-terminal
PF04885	Stigma-specific protein, Stig1
PF15253	SCL-interrupting locus protein N-terminus
PF13756	Stimulus-sensing domain
PF09061	Stirrup
PF10494	Serine-threonine protein kinase 19
PF09598	Stm1
PF07660	Secretin and TonB N terminus short domain
PF10451	Telomere regulation protein Stn1
PF09170	CST, Suppressor of cdc thirteen homolog, complex subunit STN1
PF12659	Telomere capping C-terminal wHTH
PF12191	Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain
PF11585	Insect antimicrobial peptide, stomoxyn
PF12016	Stonin 2
PF05217	STOP protein
PF10264	Winged helix Storkhead-box1 domain
PF06638	Strabismus protein
PF11083	Lantibiotic streptin immunity protein
PF06100	Streptococcal 67 kDa myosin-cross-reactive antigen like family
PF04270	Streptococcal histidine triad protein
PF14404	Ribosomally synthesized peptide in Streptomyces species
PF06696	Streptococcal surface antigen repeat
PF01657	Salt stress response/antifungal
PF08232	Striatin family
PF10266	Hereditary spastic paraplegia protein strumpellin
PF03088	Strictosidine synthase
PF02516	Oligosaccharyl transferase STT3 subunit
PF03481	Putative GTP-binding controlling metal-binding
PF01300	Telomere recombination
PF11420	Bacteriocin subtilosin A
PF13607	Succinyl-CoA ligase like flavodoxin domain
PF02910	Fumarate reductase flavoprotein C-term
PF00862	Sucrose synthase
PF06999	Sucrase/ferredoxin-like
PF11633	Single-stranded poly(A) binding domain
PF05843	Suppressor of forked protein (Suf)
PF02657	Fe-S metabolism associated domain
PF05076	Suppressor of fused protein (SUFU)
PF12470	Suppressor of Fused Gli/Ci N terminal binding domain
PF04198	Putative sugar-binding domain
PF11471	Maltoporin periplasmic N-terminal extension
PF00083	Sugar (and other) transporter
PF06800	Sugar transport protein
PF01253	Translation initiation factor SUI1
PF14433	SUKH-3 immunity protein
PF14435	SUKH-4 immunity protein
PF14567	SMI1-KNR4 cell-wall
PF14568	SMI1-KNR4 cell-wall
PF03846	Cell division inhibitor SulA
PF08257	Sulfakinin family
PF00884	Sulfatase
PF14707	C-terminal region of aryl-sulfatase
PF00916	Sulfate transporter family
PF13792	Sulfate transporter N-terminal domain with GLY motif
PF05584	Sulfolobus plasmid regulatory protein
PF00685	Sulfotransferase domain
PF03567	Sulfotransferase family
PF13469	Sulfotransferase family
PF12193	Sulfolobus virus coat protein C terminal
PF04143	Sulphur transport
PF09037	Stf0 sulphotransferase
PF03856	Beta-glucosidase (SUN family)
PF11414	Adenomatous polyposis coli tumour suppressor protein
PF11479	RNA silencing suppressor P21
PF06687	SUR7/PalI family
PF09312	SurA N-terminal domain
PF13623	SurA N-terminal domain
PF13624	SurA N-terminal domain
PF01975	Survival protein SurE
PF02104	SURF1 family
PF05477	Surfeit locus protein 2 (SURF2)
PF02077	SURF4 family
PF04935	Surfeit locus protein 6
PF01617	Surface antigen
PF11054	Sporozoite TA4 surface antigen
PF09006	Lung surfactant protein D coiled-coil trimerisation
PF07244	Surface antigen variable number repeat
PF07712	Stress up-regulated Nod 19
PF01805	Surp module
PF07980	SusD family
PF12741	Susd and RagB outer membrane lipoprotein
PF12771	Starch-binding associating with outer membrane
PF14322	Starch-binding associating with outer membrane
PF14292	SusE outer membrane protein
PF00084	Sushi domain (SCR repeat)
PF09014	Beta-2-glycoprotein-1 fifth domain
PF12513	Mitochondrial degradasome RNA helicase subunit C terminal
PF12752	SUZ domain
PF12901	SUZ-C motif
PF05326	Seminal vesicle autoantigen (SVA)
PF08622	Svf1-like
PF12113	SVM protein signal sequence
PF10578	Seminal vesicle protein repeat
PF15430	Single domain von Willebrand factor type C
PF08549	Fungal domain of unknown function (DUF1750)
PF07962	Replication Fork Protection Component Swi3
PF07061	Swi5
PF02201	SWIB/MDM2 domain
PF04434	SWIM zinc finger
PF04433	SWIRM domain
PF13753	Putative flagellar system-associated repeat
PF04099	Sybindin-like family
PF15233	Synaptonemal complex central element protein 1
PF07348	Syd protein (SUKH-2)
PF08231	SYF2 splicing factor
PF02383	SacI homology domain
PF08845	Toxin SymE, type I toxin-antitoxin system
PF12295	Symplekin tight junction protein C terminal
PF05835	Synaphin protein
PF02078	Synapsin, N-terminal domain
PF02750	Synapsin, ATP binding domain
PF10581	Synapsin N-terminal
PF00957	Synaptobrevin
PF15191	Synaptonemal complex central element protein 3
PF15138	Syncollin
PF01034	Syndecan domain
PF06047	Ras-induced vulval development antagonist
PF15290	Golgi-localised syntaxin-1-binding clamp
PF00804	Syntaxin
PF10496	SNARE-complex protein Syntaxin-18 N-terminus
PF09177	Syntaxin 6, N-terminal
PF14523	Syntaxin-like protein
PF11421	ATP synthase F1 beta subunit
PF01387	Synuclein
PF11089	Exopolysaccharide production repressor
PF09801	Integral membrane protein S linking to the trans Golgi network
PF01023	S-100/ICaBP type calcium binding domain
PF05124	S-layer like family, C-terminal region
PF05123	S-layer like family, N-terminal region
PF00954	S-locus glycoprotein family
PF14928	Short tail fibre protein receptor-binding domain
PF00907	T-box
PF00437	Type II/IV secretion system protein
PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
PF00482	Type II secretion system (T2SS), protein F
PF08334	Type II secretion system (T2SS), protein G
PF02501	Type II secretion system (T2SS), protein I
PF11612	Type II secretion system (T2SS), protein J
PF03934	Type II secretion system (T2SS), protein K
PF05134	Type II secretion system (T2SS), protein L
PF04612	Type II secretion system (T2SS), protein M
PF10741	Type II secretion system (T2SS), protein M subtype b
PF01203	Type II secretion system (T2SS), protein N
PF13629	Pilus formation protein N terminal region
PF13327	Type III secretion system subunit
PF09198	Bacteriophage T4 beta-glucosyltransferase
PF07996	Type IV secretion system proteins
PF02534	Type IV secretory system Conjugative DNA transfer
PF12322	T4 bacteriophage base plate protein
PF00837	Iodothyronine deiodinase
PF08994	T4 gene Gp59 loader of gp41 DNA helicase C-term
PF08993	T4 gene Gp59 loader of gp41 DNA helicase
PF07880	Bacteriophage T4 gp9/10-like protein
PF11649	Virus neck protein
PF11091	Tail-tube assembly protein
PF10544	T5orf172 domain
PF12790	Type VI secretion lipoprotein
PF13296	Putative type VI secretion system Rhs element Vgr
PF11494	Ta0938
PF11513	Thermoplasma acidophilum protein TA0956
PF15401	Tryptophan-ring motif of head of Trimeric autotransporter adhesin
PF05010	Transforming acidic coiled-coil-containing protein (TACC)
PF02202	Tachykinin family
PF14517	Tachylectin
PF11406	Antimicrobial peptide tachystatin A
PF11478	Antimicrobial chitin binding protein tachystatin B
PF09305	TACI, cysteine-rich domain
PF13400	Putative Flp pilus-assembly TadE/G-like
PF07811	TadE-like protein
PF09977	Putative Tad-like Flp pilus-assembly
PF05596	Taeniidae antigen
PF02969	TATA box binding protein associated factor (TAF)
PF15333	TATA box-binding protein-associated factor 1D
PF14929	TAF RNA Polymerase I subunit A
PF05236	Transcription initiation factor TFIID component TAF4 family
PF10406	Transcription factor TFIID complex subunit 8 C-term
PF12020	TAFA family
PF07531	NHR1 homology to TAF
PF10610	Thin aggregative fimbriae synthesis protein
PF04719	hTAFII28-like protein conserved region
PF04658	TAFII55 protein conserved region
PF12561	ToxR activated gene A lipoprotein
PF08013	Tagatose 6 phosphate kinase
PF09684	Phage tail protein (Tail_P2_I)
PF10618	Phage tail tube protein
PF04822	Takusan
PF09141	Talin, middle domain
PF15324	Hedgehog signalling target
PF11640	Telomere-length maintenance and DNA damage repair
PF15327	Tankyrase binding protein C terminal domain
PF07519	Tannase and feruloyl esterase
PF15386	Drosophila Tantalus-like
PF09162	Tap, RNA-binding
PF07265	Tapetum specific protein TAP35/TAP44
PF04177	TAP42-like family
PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)
PF03943	TAP C-terminal domain
PF09281	Taq polymerase, exonuclease
PF12950	TaqI-like C-terminal specificity domain
PF02203	Tar ligand binding domain homologue
PF05296	Mammalian taste receptor protein (TAS2R)
PF07708	Tash protein PEST motif
PF00539	Transactivating regulatory protein (Tat)
PF00902	Sec-independent protein translocase protein (TatC)
PF01026	TatD related DNase
PF03430	Trans-activating transcriptional regulator
PF10518	TAT (twin-arginine translocation) pathway signal sequence
PF07706	Aminotransferase ubiquitination site
PF09734	RNA polymerase III transcription factor (TF)IIIC subunit
PF02668	Taurine catabolism dioxygenase TauD, TfdA family
PF01925	Sulfite exporter TauE/SafE
PF01361	Tautomerase enzyme
PF14552	Tautomerase enzyme
PF14832	Putative oxalocrotonate tautomerase enzyme
PF02959	HTLV Tax
PF09728	Myosin-like coiled-coil protein
PF14541	Xylanase inhibitor C-terminal
PF14543	Xylanase inhibitor N-terminal
PF00683	TB domain
PF03134	TB2/DP1, HVA22 family
PF02970	Tubulin binding cofactor A
PF07986	Tubulin binding cofactor C
PF12845	TBD domain
PF06331	Transcription factor TFIIH complex subunit Tfb5
PF00352	Transcription factor TFIID (or TATA-binding protein, TBP)
PF09247	TATA box-binding protein binding
PF07106	Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
PF15517	TBP-interacting protein N-terminus
PF03558	TBSV core protein P21/P22
PF12598	T-box transcription factor
PF15063	Thyroid cancer protein 1
PF12919	TcdA/TcdB catalytic glycosyltransferase domain
PF12920	TcdA/TcdB pore forming domain
PF12918	TcdB toxin N-terminal helical domain
PF12255	Insecticide toxin TcdB middle/C-terminal region
PF12256	Insecticide toxin TcdB middle/N-terminal region
PF12104	T cell CD4 receptor C terminal region
PF04910	Transcriptional repressor TCF25
PF01840	TCL1/MTCP1 family
PF10452	TORC1 subunit TCO89
PF03634	TCP family transcription factor
PF07202	T-complex protein 10 C-terminus
PF05794	T-complex protein 11
PF05946	Toxin-coregulated pilus subunit TcpA
PF12648	TcpE family
PF06340	Vibrio cholerae toxin co-regulated pilus biosynthesis protein F
PF10671	Toxin co-regulated pilus biosynthesis protein Q
PF03638	Tesmin/TSO1-like CXC domain, cysteine-rich domain
PF14944	Tongue Cancer Chemotherapy Resistant Protein 1
PF11628	T-cell surface glycoprotein CD3 zeta chain
PF01970	Tripartite tricarboxylate transporter TctA family
PF07331	Tripartite tricarboxylate transporter TctB family
PF03401	Tripartite tricarboxylate transporter family receptor
PF03645	Tctex-1 family
PF00838	Translationally controlled tumour protein
PF03347	Vibrio thermostable direct hemolysin
PF01285	TEA/ATTS domain family
PF07404	Telomere-binding protein beta subunit (TEBP beta)
PF09300	Tectiviridae, minor capsid
PF12818	dsDNA viral tegument protein
PF03848	Tellurite resistance protein TehB
PF03148	Tektin family
PF05816	Toxic anion resistance protein (TelA)
PF09470	Telethonin protein
PF12009	Telomerase ribonucleoprotein complex - RNA binding domain
PF10193	Telomere length regulation protein
PF13019	Telomere stability and silencing
PF13297	Telomere stability C-terminal
PF12658	Telomere capping, CST complex subunit
PF15490	Telomere-capping, CST complex subunit
PF03070	TENA/THI-4/PQQC family
PF05733	Tenuivirus/Phlebovirus nucleocapsid protein
PF04876	Tenuivirus major non-capsid protein
PF05310	Tenuivirus movement protein
PF03300	Tenuivirus non-structural protein NS4
PF06656	Tenuivirus PVC2 protein
PF06484	Teneurin Intracellular Region
PF05386	TEP1 N-terminal domain
PF05472	DNA replication terminus site-binding protein (Ter protein)
PF05099	Tellurite resistance protein TerB
PF15615	TerB-C domain
PF13208	TerB-N
PF03741	Integral membrane protein TerC family
PF02342	TerD domain
PF03354	Phage Terminase
PF03592	Terminase small subunit
PF04466	Phage terminase large subunit
PF05119	Phage terminase, small subunit
PF06056	Putative ATPase subunit of terminase (gpP-like)
PF03237	Terminase-like family
PF05876	Phage terminase large subunit (GpA)
PF01397	Terpene synthase, N-terminal domain
PF03936	Terpene synthase family, metal binding domain
PF15616	TerY-C metal binding domain
PF08034	Trematode eggshell synthesis protein
PF08076	Tetracycline resistance determinant leader peptide
PF13972	Bacterial transcriptional repressor
PF11401	Tetrabrachion
PF08187	Myoactive tetradecapeptides family
PF00335	Tetraspanin family
PF02909	Tetracyclin repressor, C-terminal all-alpha domain
PF08361	MAATS-type transcriptional repressor, C-terminal region
PF08362	YcdC-like protein, C-terminal region
PF08359	YsiA-like protein, C-terminal region
PF08360	QacR-like protein, C-terminal region
PF13977	Bacterial transcriptional repressor
PF14246	AefR-like transcriptional repressor, C-terminal region
PF14278	Transcriptional regulator C-terminal region
PF14514	Transcriptional regulator, TetR, C-terminal
PF00440	Bacterial regulatory proteins, tetR family
PF12851	Oxygenase domain of the 2OGFeDO superfamily
PF08050	Tetracycline resistance leader peptide
PF15219	Testis-expressed 12
PF15186	Testis-expressed sequence 13 protein family
PF15326	Testis expressed sequence 15
PF15553	Testis-expressed protein 19
PF15400	Testis-expressed sequence 33 protein family
PF09371	Tex-like protein N-terminal domain
PF03849	Transcription factor Tfb2
PF03850	Transcription factor Tfb4
PF12612	Tubulin folding cofactor D C terminal
PF03153	Transcription factor IIA, alpha/beta subunit
PF02751	Transcription initiation factor IIA, gamma subunit
PF02268	Transcription initiation factor IIA, gamma subunit, helical domain
PF00382	Transcription factor TFIIB repeat
PF02269	Transcription initiation factor IID, 18kD subunit
PF02291	Transcription initiation factor IID, 31kD subunit
PF03847	Transcription initiation factor TFIID subunit A
PF03540	Transcription initiation factor TFIID 23-30kDa subunit
PF04494	WD40 associated region in TFIID subunit
PF11521	C-terminal general transcription factor TFIIE alpha
PF02002	TFIIE alpha subunit
PF02186	TFIIE beta subunit core domain
PF05793	Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
PF02270	Transcription initiation factor IIF, beta subunit
PF08567	TFIIH p62 subunit, N-terminal domain
PF12657	Transcription factor IIIC subunit delta N-term
PF10419	TFIIIC subunit
PF01096	Transcription factor S-II (TFIIS)
PF07500	Transcription factor S-II (TFIIS), central domain
PF04994	TfoX C-terminal domain
PF04993	TfoX N-terminal domain
PF04253	Transferrin receptor-like dimerisation domain
PF07812	TfuA-like protein
PF14601	DNA_binding protein, TFX, C-term
PF03299	Transcription factor AP-2
PF03529	Otx1 transcription factor
PF08271	TFIIB zinc-binding
PF00688	TGF-beta propeptide
PF00019	Transforming growth factor beta like domain
PF08515	Transforming growth factor beta type I GS-motif
PF11476	Toxoplasma gondii micronemal protein 1 TgMIC1
PF02824	TGS domain
PF01702	Queuine tRNA-ribosyltransferase
PF14809	C1 domain of tRNA-guanine transglycosylase dimerisation
PF14810	Patch-forming domain C2 of tRNA-guanine transglycosylase
PF04858	TH1 protein
PF15514	Restriction endonuclease ThaI
PF05485	THAP domain
PF00314	Thaumatin family
PF14789	Tetrahydrodipicolinate N-succinyltransferase middle
PF14790	Tetrahydrodipicolinate N-succinyltransferase N-terminal
PF14805	Tetrahydrodipicolinate N-succinyltransferase N-terminal
PF14912	Testicular haploid expressed repeat
PF05317	Thermopsin
PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
PF04446	tRNAHis guanylyltransferase
PF14413	Thg1 C terminal domain
PF01946	Thi4 family
PF09515	Thiamine transporter protein (Thia_YuaJ)
PF01964	ThiC family
PF13667	ThiC-associated domain
PF00899	ThiF family
PF05690	Thiazole biosynthesis protein ThiG
PF02568	Thiamine biosynthesis protein (ThiI)
PF00975	Thioesterase domain
PF10569	Alpha-macro-globulin thiol-ester bond-forming region
PF02803	Thiolase, C-terminal domain
PF00108	Thiolase, N-terminal domain
PF01289	Thiol-activated cytolysin
PF00321	Plant thionin
PF00085	Thioredoxin
PF13098	Thioredoxin-like domain
PF13192	Thioredoxin domain
PF13462	Thioredoxin
PF13743	Thioredoxin
PF13848	Thioredoxin-like domain
PF13899	Thioredoxin-like
PF13905	Thioredoxin-like
PF14595	Thioredoxin
PF03190	Protein of unknown function, DUF255
PF02597	ThiS family
PF14453	ThiS-like ubiquitin
PF09512	Thiamine-precursor transporter protein (ThiW)
PF11262	Transcription factor/nuclear export subunit protein 2
PF11732	Transcription- and export-related complex subunit
PF05615	Tho complex subunit 7
PF09432	Tho complex subunit THP2
PF15440	THRAP3/BCLAF1 family
PF09396	Thrombin light chain
PF00585	C-terminal regulatory domain of Threonine dehydratase
PF14821	Threonine synthase N terminus
PF04163	Tht1-like nuclear fusion protein
PF06283	Trehalose utilisation
PF02926	THUMP domain
PF02511	Thymidylate synthase complementing protein
PF11264	Thylakoid formation protein
PF02223	Thymidylate kinase
PF00303	Thymidylate synthase
PF08198	Thymopoietin protein
PF01290	Thymosin beta-4 family
PF00086	Thyroglobulin type-1 repeat
PF09685	Tic20-like protein
PF04278	Tic22-like family
PF06200	tify domain
PF01833	IPT/TIG domain
PF01826	Trypsin Inhibitor like cysteine rich domain
PF12714	TILa domain
PF09179	TilS substrate binding domain
PF11734	TilS substrate C-terminal domain
PF00121	Triosephosphate isomerase
PF09370	TIM-barrel signal transduction protein
PF02466	Tim17/Tim22/Tim23/Pmp24 family
PF08294	TIM21
PF04280	Tim44-like domain
PF11711	Inner membrane protein import complex subunit Tim54
PF04821	Timeless protein
PF05029	Timeless protein C terminal region
PF00965	Tissue inhibitor of metalloproteinase
PF14973	TERF1-interacting nuclear factor 2 N-terminus
PF09680	Protein of unknown function (Tiny_TM_bacill)
PF08623	TATA-binding protein interacting (TIP20)
PF14980	TIP39 peptide
PF04176	TIP41-like family
PF06068	TIP49 C-terminus
PF07739	TipAS antibiotic-recognition domain
PF12457	Tuftelin interacting protein N terminal
PF01582	TIR domain
PF10137	Predicted nucleotide-binding protein containing TIR-like domain
PF13676	TIR domain
PF07489	Translocated intimin receptor (Tir) C-terminus
PF03549	Translocated intimin receptor (Tir) intimin-binding domain
PF07490	Translocated intimin receptor (Tir) N-terminus
PF04553	Tis11B like protein, N terminus
PF13939	Toxin TisB, type I toxin-antitoxin system
PF01108	Tissue factor
PF09042	Titin Z
PF00265	Thymidine kinase
PF03219	TLC ATP/ADP transporter
PF07534	TLD
PF03920	Groucho/TLE N-terminal Q-rich domain
PF06088	Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
PF00429	ENV polyprotein (coat polyprotein)
PF14985	TM140 protein family
PF08973	Domain of unknown function (DUF1893)
PF14512	Putative TM nitroreductase
PF05154	TM2 domain
PF10149	Transmembrane protein 231
PF09072	Translation machinery associated TMA7
PF07810	TMC domain
PF14992	TMCO5 family
PF09064	Thrombomodulin like fifth domain, EGF-like
PF15111	TMEM101 protein family
PF14995	Transmembrane protein
PF15113	TMEM117 protein family
PF15109	TMEM125 protein family
PF14935	Transmembrane protein 138
PF15110	TMEM141 protein family
PF14857	TMEM151 family
PF15102	TMEM154 protein family
PF15106	TMEM156 protein family
PF14808	TMEM164 family
PF15052	TMEM169 protein family
PF15471	Transmembrane protein family 171
PF15009	Transmembrane protein 173
PF14770	Transmembrane protein 18
PF15100	TMEM187 protein family
PF15431	Transmembrane protein 190
PF15194	TMEM191C family
PF14802	TMEM192 family
PF15122	TMEM206 protein family
PF15195	TMEM210 family
PF15192	TMEM213 family
PF14940	Transmembrane 219
PF15071	Transmembrane family 220, helix
PF14640	Transmembrane protein 223
PF15383	Transmembrane protein 237
PF15125	TMEM238 protein family
PF15207	TMEM240 family
PF15444	Transmembrane protein 247
PF09772	Transmembrane protein 26
PF15108	Voltage-dependent calcium channel gamma-like subunit protein family
PF15345	Transmembrane protein 51
PF14979	Transmembrane 52
PF15105	TMEM61 protein family
PF15121	TMEM71 protein family
PF15098	TMEM89 protein family
PF15203	TMEM95 family
PF03647	Transmembrane proteins 14C
PF10268	Predicted transmembrane protein 161AB
PF10190	Putative transmembrane protein 170
PF10269	Transmembrane Fragile-X-F protein
PF09771	Transmembrane protein 188
PF10160	Predicted membrane protein
PF09788	Transmembrane protein 55A
PF05434	TMEM9
PF10267	Predicted transmembrane and coiled-coil 2 protein
PF11044	Plectrovirus spv1-c74 ORF 12 transmembrane protein
PF12329	TATA element modulatory factor 1 DNA binding
PF12325	TATA element modulatory factor 1 TATA binding
PF06234	Toluene-4-monooxygenase system protein B (TmoB)
PF05017	TMP repeat
PF02581	Thiamine monophosphate synthase/TENI
PF10271	Putative transmembrane protein
PF07851	TMPIT-like protein
PF10272	Putative transmembrane protein precursor
PF06791	Prophage tail length tape measure protein
PF00721	Virus coat protein (TMV like)
PF05552	Conserved TM helix
PF08721	TnsA endonuclease C terminal
PF08722	TnsA endonuclease N terminal
PF11426	Tn7 transposition regulator TnsC
PF09035	Excisionase from transposon Tn916
PF08053	Tryptophanese operon leader peptide
PF00229	TNF(Tumour Necrosis Factor) family
PF00020	TNFR/NGFR cysteine-rich region
PF05621	Bacterial TniB protein
PF06527	TniQ
PF05717	IS66 Orf2 like protein
PF14198	Transposon-encoded protein TnpV
PF14202	Transposon-encoded protein TnpW
PF14706	Transposase DNA-binding
PF12017	Transposase protein
PF12596	87kDa Transposase
PF13842	DDE_Tnp_1-like zinc-ribbon
PF03898	Satellite tobacco necrosis virus coat protein
PF03459	TOBE domain
PF08402	TOBE domain
PF12857	TOBE-like domain
PF05271	Tobravirus 2B protein
PF14249	Tocopherol cyclase
PF12549	Tyrosine hydroxylase N terminal
PF06519	TolA C-terminal
PF04052	TolB amino-terminal domain
PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
PF05494	Toluene tolerance, Ttg2
PF08219	Outer membrane protein TOM13
PF06552	Plant specific mitochondrial import receptor subunit TOM20
PF04281	Mitochondrial import receptor subunit Tom22
PF10568	Outer mitochondrial membrane transport complex protein
PF11801	Tom37 C-terminal domain
PF10642	Mitochondrial import receptor subunit or translocase
PF08038	TOM7 family
PF05318	Tombusvirus movement protein
PF03220	Tombusvirus P19 core protein
PF08500	Tombusvirus p33
PF15184	Mitochondrial import receptor subunit TOM6 homolog
PF15178	Mitochondrial import receptor subunit TOM5 homolog
PF13103	TonB C terminal
PF03544	Gram-negative bacterial TonB protein C-terminal
PF00593	TonB dependent receptor
PF09239	Topoisomerase VI B subunit, transducer
PF01131	DNA topoisomerase
PF01028	Eukaryotic DNA topoisomerase I, catalytic core
PF02919	Eukaryotic DNA topoisomerase I, DNA binding fragment
PF14370	C-terminal topoisomerase domain
PF08272	Topoisomerase I zinc-ribbon-like
PF01751	Toprim domain
PF13155	Toprim-like
PF13362	Toprim domain
PF13662	Toprim domain
PF13342	C-terminal repeat of topoisomerase
PF13368	Topoisomerase C-terminal repeat
PF08275	DNA primase catalytic core, N-terminal domain
PF12886	Transducer of regulated CREB activity, C terminus
PF12885	Transducer of regulated CREB activity middle domain
PF12884	Transducer of regulated CREB activity, N terminus
PF06309	Torsin
PF01533	Tospovirus nucleocapsid protein
PF05518	Totivirus coat protein
PF09121	Tower
PF15633	HYD1 signature containing ADP-ribosyltransferase
PF15634	HYE1 signature containing ADP-ribosyltransferase
PF15636	GHH signature containing HNH/Endo VII superfamily nuclease toxin
PF15635	GHH signature containing HNH/Endo VII superfamily nuclease toxin  2
PF15656	Toxin with a H, D/N and C signature
PF15657	HNH/Endo VII superfamily nuclease toxins
PF15637	HNH/Endo VII superfamily nuclease toxin with a HHH motif
PF15638	Metallopeptidase toxin 2
PF15639	Metallopeptidase toxin 3
PF15640	Metallopeptidase toxin 4
PF15641	Metallopeptidase toxin 5
PF15642	Toxin in Odyssella and Amoebophilus
PF15644	Papain fold toxin 1
PF15643	Papain fold toxin 2
PF15645	Dermonecrotoxin of the Papain-like fold
PF15646	Restriction endonuclease fold toxin 2
PF15647	Restriction endonuclease fold toxin 3
PF15648	Restriction endonuclease fold toxin 5
PF15649	Restriction endonuclease fold toxin 7
PF15650	Restriction endonuclease fold toxin 9
PF15651	Salivary glad secreted protein domain toxin
PF15652	HNH/Endo VII superfamily toxin with a SHH signature
PF15653	URI fold toxin 2
PF15654	Toxin with a conserved tryptophan and TIP tripeptide motif
PF14424	The  BURPS668_1122 family of deaminases
PF15659	JAB-like toxin  1
PF00087	Snake toxin
PF05431	Insecticidal Crystal Toxin, P42
PF07473	Spasmodic peptide gm9a
PF07740	Ion channel inhibitory toxin
PF07822	Neurotoxin B-IV-like protein
PF07829	Alpha-A conotoxin PIVA-like protein
PF07906	ShET2 enterotoxin, N-terminal region
PF07945	Janus-atracotoxin
PF08086	Ergtoxin family
PF08087	Conotoxin O-superfamily
PF08088	Conotoxin I-superfamily
PF00451	Scorpion short toxin, BmKK2
PF08089	Huwentoxin-II family
PF08091	Spider insecticidal peptide
PF08092	Magi peptide toxin family
PF08093	Magi 5 toxic peptide family
PF08094	Conotoxin TVIIA/GS family
PF08095	Hefutoxin family
PF08097	Conotoxin T-superfamily
PF08099	Scorpion calcine family
PF08115	SFI toxin family
PF08116	PhTx neurotoxin family
PF00537	Scorpion toxin-like domain
PF08117	Ptu family
PF08119	Scorpion acidic alpha-KTx toxin family
PF08120	Tamulustoxin family
PF08121	Waglerin family
PF08396	Spider toxin omega agatoxin/Tx1 family
PF10530	Toxin with inhibitor cystine knot ICK or Knottin scaffold
PF10550	Conantokin-G mollusc-toxin
PF11415	Antifungal peptide termicin
PF14866	Potassium channel toxin
PF15500	Putative RNase-like toxin
PF00706	Anenome neurotoxin
PF15520	Putative toxin 40
PF15521	Putative toxin 41
PF15522	Putative toxin 42
PF15604	Putative toxin 43
PF15523	Putative toxin 44
PF15524	Putative toxin 45
PF15526	Putative toxin 46
PF15527	Putative toxin 47
PF15528	Putative toxin 48
PF15529	Putative toxin 49
PF05294	Scorpion short toxin
PF15530	Putative toxin 50
PF15531	Putative toxin 51
PF15605	Putative toxin 52
PF15532	Putative toxin 53
PF15533	Putative toxin 54
PF15606	Putative toxin 55
PF15534	Putative toxin 56
PF15535	Putative toxin 57
PF15536	Putative toxin 58
PF15537	Putative toxin 59
PF05453	BmTXKS1/BmP02 toxin family
PF15607	Putative toxin 60
PF15538	Putative toxin 61
PF15540	Putative toxin 62
PF15541	Putative toxin 63
PF15542	Putative toxin 64
PF15543	Putative toxin 65
PF15544	Putative toxin 66
PF15545	Putative toxin 67
PF05980	Toxin 7
PF07365	Alpha conotoxin precursor
PF02819	Spider toxin
PF07951	Clostridium neurotoxin, C-terminal receptor binding
PF07953	Clostridium neurotoxin, N-terminal receptor binding
PF11584	Proteinaceous host-selective toxin ToxA
PF07952	Clostridium neurotoxin, Translocation domain
PF11663	Toxin with endonuclease activity YhaV
PF13958	Toxin ToxN, type III toxin-antitoxin system
PF02079	Nuclear transition protein 1
PF01254	Nuclear transition protein 2
PF15331	Cellular tumour antigen p53-inducible 5
PF04406	Type IIB DNA topoisomerase
PF12642	Conjugative transposon protein TcpC
PF14811	Protein of unknown function TPD sequence-motif
PF04201	Tumour protein D52 family
PF15338	p53-regulated apoptosis-inducing protein 1
PF04265	Thiamin pyrophosphokinase, vitamin B1 binding domain
PF04263	Thiamin pyrophosphokinase, catalytic domain
PF04536	TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase
PF05724	Thiopurine S-methyltransferase (TPMT)
PF10341	Shelterin complex subunit, TPP1/ACD
PF12580	Tripeptidyl peptidase II
PF12583	Tripeptidyl peptidase II N terminal
PF12555	Thiamine pyrophosphokinase C terminal
PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
PF00205	Thiamine pyrophosphate enzyme, central domain
PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
PF00515	Tetratricopeptide repeat
PF13374	Tetratricopeptide repeat
PF13414	TPR repeat
PF13424	Tetratricopeptide repeat
PF13428	Tetratricopeptide repeat
PF13429	Tetratricopeptide repeat
PF13432	Tetratricopeptide repeat
PF13431	Tetratricopeptide repeat
PF13512	Tetratricopeptide repeat
PF14559	Tetratricopeptide repeat
PF07719	Tetratricopeptide repeat
PF14561	Tetratricopeptide repeat
PF09976	Tetratricopeptide repeat
PF07720	Tetratricopeptide repeat
PF07721	Tetratricopeptide repeat
PF12688	Tetratrico peptide repeat
PF13174	Tetratricopeptide repeat
PF13176	Tetratricopeptide repeat
PF13181	Tetratricopeptide repeat
PF13371	Tetratricopeptide repeat
PF07926	TPR/MLP1/MLP2-like protein
PF03151	Triose-phosphate Transporter family
PF06886	Targeting protein for Xklp2 (TPX2)
PF12214	Cell cycle regulated microtubule associated protein
PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
PF11052	Trans-sialidase of Trypanosoma hydrophobic C-terminal
PF02343	TRA-1 regulated protein R03H10.4
PF05513	TraA
PF01963	TraB family
PF07820	TraC-like protein
PF11130	F pilus assembly Type-IV secretion system for plasmid transfer
PF06412	Conjugal transfer protein TraD
PF09034	TRADD, N-terminal domain
PF12615	F sex factor protein N terminal
PF05309	TraE protein
PF13728	F plasmid transfer operon protein
PF13729	F plasmid transfer operon, TraF, protein
PF12696	TraM recognition site of TraD and TraG
PF07916	TraG-like protein, N-terminal region
PF06122	Conjugative relaxosome accessory transposon protein
PF06871	TraH_2
PF07057	DNA helicase TraI
PF07514	Putative helicase
PF06586	TraK protein
PF07178	TraL protein
PF01938	TRAM domain
PF08390	TRAM1-like protein
PF03798	TLC domain
PF06986	Type-1V conjugative transfer system mating pair stabilisation
PF00923	Transaldolase
PF11507	Ebola virus-specific transcription factor VP30
PF04949	Transcriptional activator
PF01709	Transcriptional regulator
PF02458	Transferase family
PF00405	Transferrin
PF06495	Fruit fly transformer protein
PF00927	Transglutaminase family, C-terminal ig like domain
PF01841	Transglutaminase-like superfamily
PF13369	Transglutaminase-like superfamily
PF13471	Transglutaminase-like superfamily
PF14400	Inactive transglutaminase fused to 7 transmembrane helices
PF00868	Transglutaminase family
PF09017	Microbial transglutaminase
PF00912	Transglycosylase
PF06737	Transglycosylase-like domain
PF04226	Transglycosylase associated protein
PF02780	Transketolase, C-terminal domain
PF00456	Transketolase, thiamine diphosphate binding domain
PF02779	Transketolase, pyrimidine binding domain
PF01818	Bacteriophage translational regulator
PF01997	Translin family
PF09799	Predicted membrane protein
PF00905	Penicillin binding protein transpeptidase domain
PF14399	NlpC/p60-like transpeptidase
PF11431	Membrane transport protein MerF
PF01359	Transposase (partial DDE domain)
PF02371	Transposase IS116/IS110/IS902 family
PF02992	Transposase family tnp2
PF02994	L1 transposable element
PF03017	TNP1/EN/SPM transposase
PF03004	Plant transposase (Ptta/En/Spm family)
PF04195	Putative gypsy type transposon
PF04754	Putative transposase, YhgA-like
PF00872	Transposase, Mutator family
PF13963	Transposase-associated domain
PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
PF04236	Tc5 transposase C-terminal domain
PF00576	HIUase/Transthyretin family
PF00486	Transcriptional regulatory protein, C terminal
PF10626	Conjugative transposon protein TraO
PF07296	TraP protein
PF05404	Translocon-associated protein, delta subunit precursor (TRAP-delta)
PF07074	Translocon-associated protein, gamma subunit (TRAP-gamma)
PF04051	Transport protein particle (TRAPP) component
PF12739	ER-Golgi trafficking TRAPP I complex 85 kDa subunit
PF12584	Trafficking protein particle complex subunit 10, TRAPPC10
PF08626	Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit
PF03896	Translocon-associated protein (TRAP), alpha subunit
PF05753	Translocon-associated protein beta (TRAPB)
PF09679	Type-F conjugative transfer system pilin chaperone (TraQ)
PF10624	Plasmid conjugative transfer entry exclusion protein TraS
PF05818	Enterobacterial TraT complement resistance protein
PF06834	TraU protein
PF08164	Apoptosis-antagonizing transcription factor, C-terminal
PF09676	Type IV conjugative transfer system lipoprotein (TraV)
PF12477	Sex factor F TraW protein N terminal
PF05857	TraX protein
PF05509	TraY domain
PF05261	TraM protein, DNA-binding
PF04956	TrbC/VIRB2 family
PF09673	Type-F conjugative transfer system pilin assembly protein
PF11100	Conjugal transfer protein TrbE
PF07283	Conjugal transfer protein TrbH
PF03743	Bacterial conjugation TrbI-like protein
PF09677	Type-F conjugative transfer system protein (TrbI_Ftype)
PF04610	TrbL/VirB6 plasmid conjugal transfer protein
PF07424	TrbM
PF13705	TRC8 N-terminal domain
PF03461	TRCF domain
PF03546	Treacher Collins syndrome protein Treacle
PF00088	Trefoil (P-type) domain
PF01204	Trehalase
PF07492	Neutral trehalase Ca2+ binding domain
PF02358	Trehalose-phosphatase
PF06151	Trehalose receptor
PF09710	Treponema clustered lipoprotein (Trep_dent_lipo)
PF09605	Hypothetical bacterial integral membrane protein (Trep_Strep)
PF15292	Treslin N-terminus
PF08558	Telomere repeat binding factor (TRF)
PF07042	TrfA protein
PF05438	Thyrotropin-releasing hormone (TRH)
PF06609	Fungal trichothecene efflux pump (TRI12)
PF07428	15-O-acetyltransferase Tri3
PF06330	Trichodiene synthase (TRI5)
PF08195	TRI9 protein
PF03973	Triabin
PF05197	TRIC channel
PF13868	Tumour suppressor, Mitostatin
PF05892	Trichovirus coat protein
PF14684	Tricorn protease C1 domain
PF14685	Tricorn protease PDZ domain
PF05698	Bacterial trigger factor protein (TF) C-terminus
PF05697	Bacterial trigger factor protein (TF)
PF15168	Triple QxxK/R motif-containing protein family
PF02080	TrkA-C domain
PF02254	TrkA-N domain
PF02386	Cation transport protein
PF13146	TRL-like protein family
PF02005	N2,N2-dimethylguanosine tRNA methyltransferase
PF03966	Trm112p-like protein
PF05206	Methyltransferase TRM13
PF01994	tRNA ribose 2'-O-methyltransferase, aTrm56
PF01978	Sugar-specific transcriptional regulator TrmB
PF10396	GTP-binding protein TrmE N-terminus
PF00133	tRNA synthetases class I (I, L, M and V)
PF00579	tRNA synthetases class I (W and Y)
PF00749	tRNA synthetases class I (E and Q), catalytic domain
PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
PF00750	tRNA synthetases class I (R)
PF01406	tRNA synthetases class I (C) catalytic domain
PF01921	tRNA synthetases class I (K)
PF09334	tRNA synthetases class I (M)
PF13603	Leucyl-tRNA synthetase, Domain 2
PF00152	tRNA synthetases class II (D, K and N)
PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
PF01411	tRNA synthetases class II (A)
PF01409	tRNA synthetases class II core domain (F)
PF02091	Glycyl-tRNA synthetase alpha subunit
PF13393	Histidyl-tRNA synthetase
PF08915	Archaea-specific editing domain of threonyl-tRNA synthetase
PF01336	OB-fold nucleic acid binding domain
PF12869	tRNA_anti-like
PF13742	OB-fold nucleic acid binding domain
PF01588	Putative tRNA binding domain
PF13725	Possible tRNA binding domain
PF04414	D-aminoacyl-tRNA deacylase
PF04073	Aminoacyl-tRNA editing domain
PF01974	tRNA intron endonuclease, catalytic C-terminal domain
PF02778	tRNA intron endonuclease, N-terminal domain
PF12928	tRNA-splicing endonuclease subunit sen54 N-term
PF08302	Fungal tRNA ligase phosphodiesterase domain
PF08303	tRNA ligase kinase domain
PF01746	tRNA (Guanine-1)-methyltransferase
PF03054	tRNA methyl transferase
PF13735	tRNA nucleotidyltransferase domain 2 putative
PF09249	tRNA nucleotidyltransferase, second domain
PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
PF04558	Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
PF04557	Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2
PF02092	Glycyl-tRNA synthetase beta subunit
PF05958	tRNA (Uracil-5-)-methyltransferase
PF02583	Metal-sensitive transcriptional repressor
PF01297	Periplasmic solute binding protein family
PF03250	Tropomodulin
PF00261	Tropomyosin
PF12718	Tropomyosin like
PF00992	Troponin
PF11636	Troponin I residues 1-32
PF05731	TROVE domain
PF06011	Transient receptor potential (TRP) ion channel
PF02081	Tryptophan RNA-binding attenuator protein
PF08344	Transient receptor ion channel II
PF03301	Tryptophan 2,3-dioxygenase
PF11991	Tryptophan dimethylallyltransferase
PF04820	Tryptophan halogenase
PF08055	Tryptophan leader peptide
PF08056	Tryptophan operon leader peptide
PF14558	ML-like domain
PF09534	Tryptophan-associated transmembrane protein (Trp_oprn_chp)
PF01371	Trp repressor protein
PF00290	Tryptophan synthase alpha chain
PF03222	Tryptophan/tyrosine permease family
PF12735	TRAPP trafficking subunit Trs65
PF12500	TRSP domain C terminus to PRTase_2
PF09157	Pseudouridine synthase II TruB, C-terminal
PF09142	tRNA Pseudouridine synthase II, C terminal
PF01509	TruB family pseudouridylate synthase (N terminal domain)
PF01142	tRNA pseudouridine synthase D (TruD)
PF10412	Type IV secretion-system coupling protein DNA-binding domain
PF08751	TrwC relaxase
PF00913	Trypanosome variant surface glycoprotein (A-type)
PF10659	Trypanosome variant surface glycoprotein C-terminal domain
PF05887	Procyclic acidic repetitive protein (PARP)
PF00089	Trypsin
PF13365	Trypsin-like peptidase domain
PF00234	Protease inhibitor/seed storage/LTP family
PF08248	Tryptophyllin-3 skin active peptide
PF12319	Tryptophan-Threonine-rich plasmodium antigen C terminal
PF03249	Type specific antigen
PF15217	TSC21 family
PF01166	TSC-22/dip/bun family
PF12637	TSCPD domain
PF04668	Twisted gastrulation (Tsg) protein conserved region
PF14994	Testis-specific gene 13 protein
PF07771	Tick salivary peptide group 1
PF15358	Testis-specific serine kinase substrate
PF15216	Thymic stromal lymphopoietin
PF04705	Thiostrepton-resistance methylase, N terminus
PF06300	Tsp45I type II restriction enzyme
PF11493	Thylakoid soluble phosphoprotein TSP9
PF03073	TspO/MBR family
PF00090	Thrombospondin type 1 domain
PF02412	Thrombospondin type 3 repeat
PF05735	Thrombospondin C-terminal region
PF15264	Tumour suppressing sub-chromosomal transferable candidate 4
PF10212	Predicted coiled-coil domain-containing protein
PF03133	Tubulin-tyrosine ligase family
PF12468	Type III secretion system leucine rich repeat protein
PF02956	TT viral orf 1
PF02957	TT viral ORF2
PF08197	pORF2a truncated protein
PF01167	Tub family
PF12198	Theoretical tuberculin protein
PF03542	Tuberin
PF00091	Tubulin/FtsZ family, GTPase domain
PF00418	Tau and MAP protein, tubulin-binding repeat
PF13809	Tubulin like
PF14881	Tubulin domain
PF03953	Tubulin C-terminal domain
PF04525	Tubby C 2
PF00567	Tudor domain
PF11717	RNA binding activity-knot of a chromodomain
PF11470	GLUT4 regulating protein TUG
PF08581	Tup N-terminal
PF07240	Stress-inducible humoral factor Turandot
PF01206	Sulfurtransferase TusA
PF15000	Tumour suppressor candidate 2
PF04906	Tweety
PF01021	TYA transposon protein
PF09059	TyeA
PF05711	Macrocin-O-methyltransferase (TylF)
PF03251	Tymovirus 45/70Kd protein
PF00983	Tymovirus coat protein
PF12564	Type III restriction/modification enzyme methylation subunit
PF09477	Bacterial type II secretion system chaperone protein (type_III_yscG)
PF09474	Type III secretion system YscX (type_III_YscX)
PF06087	Tyrosyl-DNA phosphodiesterase
PF00264	Common central domain of tyrosinase
PF02580	D-Tyr-tRNA(Tyr) deacylase
PF02676	Methyltransferase TYW3
PF02217	Origin of replication binding protein
PF15128	T-cell leukemia translocation-altered
PF12261	Thermostable hemolysin
PF04564	U-box domain
PF12220	U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
PF12397	U3 small nucleolar RNA-associated protein 10
PF08640	U3 small nucleolar RNA-associated protein 6
PF08297	U3 snoRNA associated
PF10597	U5-snRNA binding site 2 of PrP8
PF10596	U6-snRNA interacting domain of PrP8
PF03064	HSV U79 / HCMV P34
PF08449	UAA transporter family
PF14732	Ubiquitin/SUMO-activating enzyme ubiquitin-like domain
PF05234	UAF complex subunit Rrn10
PF14451	Mut7-C ubiquitin
PF03658	RnfH family Ubiquitin
PF14814	Bifunctional transglycosylase second domain
PF00627	UBA/TS-N domain
PF02134	Repeat in ubiquitin-activating (UBA) protein
PF08587	Ubiquitin associated domain (UBA)
PF09288	Fungal ubiquitin-associated domain
PF14555	UBA-like domain
PF09358	Ubiquitin-activating enzyme e1 C-terminal domain
PF10585	Ubiquitin-activating enzyme active site
PF01040	UbiA prenyltransferase family
PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
PF01209	ubiE/COQ5 methyltransferase family
PF09145	Ubiquitin-associated
PF09165	Ubiquinol-cytochrome c reductase 8 kDa, N-terminal
PF00240	Ubiquitin family
PF14560	Ubiquitin-like domain
PF14836	Ubiquitin-like domain
PF03981	Ubiquinol-cytochrome C chaperone
PF14223	gag-polypeptide of LTR copia-type
PF14227	gag-polypeptide of LTR copia-type
PF14244	gag-polypeptide of LTR copia-type
PF14075	Ubinuclein conserved middle domain
PF00789	UBX domain
PF00443	Ubiquitin carboxyl-terminal hydrolase
PF13423	Ubiquitin carboxyl-terminal hydrolase
PF11613	Agonist of corticotropin releasing factor R2, Urocortin-2
PF02939	UcrQ family
PF02271	Ubiquinol-cytochrome C reductase complex 14kD subunit
PF08997	Ubiquinol-cytochrome C reductase complex, 6.4kD protein
PF10399	Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
PF02320	Ubiquinol-cytochrome C reductase hinge protein
PF02921	Ubiquinol cytochrome reductase transmembrane region
PF05365	Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like
PF03456	uDENN domain
PF03167	Uracil DNA glycosylase superfamily
PF06427	UDP-glucose:Glycoprotein Glucosyltransferase
PF01704	UTP--glucose-1-phosphate uridylyltransferase
PF00201	UDP-glucoronosyl and UDP-glucosyl transferase
PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
PF15456	Up-regulated During Septation
PF05743	UEV domain
PF08694	Ubiquitin-fold modifier-conjugating enzyme 1
PF03152	Ubiquitin fusion degradation protein UFD1
PF10408	Ubiquitin elongating factor core
PF03671	Ubiquitin fold modifier 1 protein
PF02809	Ubiquitin interaction motif
PF02512	Virulence determinant
PF11094	Membrane-associated tegument protein
PF08196	UL2 protein
PF10682	Glycoprotein of human cytomegalovirus HHV-5
PF12522	Cytomegalovirus glycoprotein N terminal
PF06734	UL97
PF05685	Putative restriction endonuclease
PF04817	Umbravirus long distance movement (LDM) family
PF08064	UME (NUC010) domain
PF05348	Proteasome maturation factor UMP1
PF05822	Pyrimidine 5'-nucleotidase (UMPH-1)
PF07593	ASPIC and UnbV
PF05216	UNC-50 family
PF14776	Cation-channel complex subunit UNC-79
PF05978	Ion channel regulatory protein UNC-93
PF15435	UNC119-binding protein C5orf30 homologue
PF11701	Myosin-binding striated muscle assembly central
PF09720	Putative addiction module component
PF11543	Nuclear pore localisation protein NPL4
PF00021	u-PAR/Ly-6 domain
PF00919	Uncharacterized protein family UPF0004
PF03649	Uncharacterised protein family (UPF0014)
PF01169	Uncharacterized protein family UPF0016
PF01170	Putative RNA methylase family UPF0020
PF01205	Uncharacterized protein family UPF0029
PF01894	Uncharacterised protein family UPF0047
PF01458	Uncharacterized protein family (UPF0051)
PF01933	Uncharacterised protein family UPF0052
PF02130	Uncharacterized protein family UPF0054
PF01893	Uncharacterised protein family UPF0058
PF02694	Uncharacterised BCR, YnfA/UPF0060 family
PF02696	Uncharacterized ACR, YdiU/UPF0061 family
PF01980	Uncharacterised protein family UPF0066
PF03702	Uncharacterised protein family (UPF0075)
PF02367	Uncharacterised P-loop hydrolase UPF0079
PF03652	Uncharacterised protein family (UPF0081)
PF01868	Domain of unknown function UPF0086
PF03653	Uncharacterised protein family (UPF0093)
PF02021	Uncharacterised protein family UPF0102
PF03706	Uncharacterised protein family (UPF0104)
PF03657	Uncharacterised protein family (UPF0113)
PF03350	Uncharacterized protein family, UPF0114
PF01594	Domain of unknown function DUF20
PF03661	Uncharacterised protein family (UPF0121)
PF04297	Putative helix-turn-helix protein, YlxM / p13 like
PF03458	UPF0126 domain
PF03673	Uncharacterised protein family (UPF0128)
PF03677	Uncharacterised protein family (UPF0137)
PF03669	Uncharacterised protein family (UPF0139)
PF03686	Uncharacterised protein family (UPF0146)
PF03685	Uncharacterised protein family (UPF0147)
PF03695	Uncharacterised protein family (UPF0149)
PF03681	Uncharacterised protein family (UPF0150)
PF03672	Uncharacterised protein family (UPF0154)
PF03682	Uncharacterised protein family (UPF0158)
PF03690	Uncharacterised protein family (UPF0160)
PF03687	Uncharacterised protein family (UPF0164)
PF03691	Uncharacterised protein family (UPF0167)
PF03665	Uncharacterised protein family (UPF0172)
PF03683	Uncharacterised protein family (UPF0175)
PF03684	Uncharacterised protein family (UPF0179)
PF03698	Uncharacterised protein family (UPF0180)
PF03701	Uncharacterised protein family (UPF0181)
PF03699	Uncharacterised protein family (UPF0182)
PF03676	Uncharacterised protein family (UPF0183)
PF03670	Uncharacterised protein family (UPF0184)
PF05250	Uncharacterised protein family (UPF0193)
PF05251	Uncharacterised protein family (UPF0197)
PF05254	Uncharacterised protein family (UPF0203)
PF05255	Uncharacterised protein family (UPF0220)
PF05256	Uncharacterised protein family (UPF0223)
PF05728	Uncharacterised protein family (UPF0227)
PF05727	Uncharacterised protein family (UPF0228)
PF06062	Uncharacterised protein family (UPF0231)
PF06781	Uncharacterised protein family (UPF0233)
PF06782	Uncharacterised protein family (UPF0236)
PF06783	Uncharacterised protein family (UPF0239)
PF06784	Uncharacterised protein family (UPF0240)
PF06785	Uncharacterised protein family (UPF0242)
PF06786	Uncharacterised protein family (UPF0253)
PF06787	Uncharacterised protein family (UPF0254)
PF06788	Uncharacterised protein family (UPF0257)
PF06789	Uncharacterised protein family (UPF0258)
PF06790	Uncharacterised protein family (UPF0259)
PF06792	Uncharacterised protein family (UPF0261)
PF06793	Uncharacterised protein family (UPF0262)
PF06794	Uncharacterised protein family (UPF0270)
PF08745	UPF0278 family
PF08594	Uncharacterised protein family (UPF0300)
PF08864	UPF0302 domain
PF13980	Uncharacterised protein family (UPF0370)
PF15475	Transmembrane protein C12orf23, UPF0444
PF15136	Uncharacterised protein family UPF0449
PF12640	UPF0489 domain
PF11703	UPF0506
PF15135	Uncharacterised protein UPF0515
PF15086	Uncharacterised protein family UPF0542
PF10639	Uncharacterised protein family UPF0546
PF10571	Uncharacterised protein family UPF0547
PF10574	Uncharacterised protein family UPF0552
PF10572	Uncharacterised protein family UPF0556
PF10577	Uncharacterised protein family UPF0560
PF10573	Uncharacterised protein family UPF0561
PF10595	Uncharacterised protein family UPF0564
PF10561	Uncharacterised protein family UPF0565
PF15114	Uncharacterised protein family UPF0640
PF15117	Uncharacterised protein family UPF0697
PF15092	Uncharacterised protein family UPF0728
PF14982	UPF0731 family
PF09416	RNA helicase (UPF2 interacting domain)
PF04050	Up-frameshift suppressor 2
PF14681	Uracil phosphoribosyltransferase
PF06603	UpxZ family of transcription anti-terminator antagonists
PF00179	Ubiquitin-conjugating enzyme
PF10441	Urb2/Npa2 family
PF00449	Urease alpha-subunit, N-terminal domain
PF00699	Urease beta subunit
PF00547	Urease, gamma subunit
PF01774	UreD urease accessory protein
PF05194	UreE urease accessory protein, C-terminal domain
PF02814	UreE urease accessory protein, N-terminal domain
PF01730	UreF
PF07168	Ureide permease
PF04115	Ureidoglycolate hydrolase
PF01014	Uricase
PF09138	Urm1 (Ubiquitin related modifier)
PF01208	Uroporphyrinogen decarboxylase (URO-D)
PF01175	Urocanase
PF07353	Uroplakin II
PF02083	Urotensin II
PF02476	US2 family
PF02393	US22 like
PF09753	Membrane fusion protein Use1
PF06233	Usg-like family
PF00577	Outer membrane usher protein
PF04871	Uso1 / p115 like vesicle tethering protein, C terminal region
PF04869	Uso1 / p115 like vesicle tethering protein, head region
PF00582	Universal stress protein family
PF14533	Ubiquitin-specific protease C-terminal
PF12436	ICP0-binding domain of Ubiquitin-specific protease 7
PF08969	USP8 dimerisation domain
PF08941	USP8 interacting
PF10625	Universal stress protein B (UspB)
PF05722	Ustilago B locus mating-type protein
PF03253	Urea transporter
PF01099	Uteroglobin family
PF03998	Utp11 protein
PF04003	Dip2/Utp12 Family
PF08625	Utp13 specific WD40 associated domain
PF04615	Utp14 protein
PF09384	UTP15 C terminal
PF04192	Utp21 specific WD40 associated putative domain
PF10395	Utp8 family
PF07702	UTRA domain
PF03851	UV-endonuclease UvdE
PF02151	UvrB/uvrC motif
PF12344	Ultra-violet resistance protein B
PF08459	UvrC Helix-hairpin-helix N-terminal
PF00580	UvrD/REP helicase N-terminal domain
PF13361	UvrD-like helicase C-terminal domain
PF13538	UvrD-like helicase C-terminal domain
PF11637	ATP-dependant DNA helicase UvsW
PF11056	Recombination, repair and ssDNA binding protein UvsY
PF02614	Glucuronate isomerase
PF11803	UDP-glucuronate decarboxylase N-terminal
PF03786	D-mannonate dehydratase (UxuA)
PF03223	V-ATPase subunit C
PF03179	Vacuolar (H+)-ATPase G subunit
PF11698	V-ATPase subunit H
PF03224	V-ATPase subunit H
PF07686	Immunoglobulin V-set domain
PF08204	CD47 immunoglobulin-like domain
PF05008	Vesicle transport v-SNARE protein N-terminus
PF12352	Snare region anchored in the vesicle membrane C-terminus
PF01639	Viral family 110
PF03402	Vomeronasal organ pheromone receptor family, V1R
PF02830	V4R domain
PF12755	Vacuolar 14 Fab1-binding region
PF11916	Vacuolar protein 14 C-terminal Fig4p binding
PF12751	Vacuolar segregation subunit 7
PF02691	Vacuolating cyotoxin
PF03077	Putative vacuolating cytotoxin
PF04333	VacJ like lipoprotein
PF02346	Chordopoxvirus fusion protein
PF09783	Vacuolar import and degradation protein
PF15310	Vitamin A-deficiency (VAD) rat model signalling
PF10458	Valyl tRNA synthetase tRNA binding arm
PF11437	Vanadium-binding protein 2
PF04294	VanW like protein
PF02557	D-alanyl-D-alanine carboxypeptidase
PF04892	VanZ like family
PF05316	Mitochondrial ribosomal protein (VAR1)
PF14383	DUF761-associated sequence motif
PF03490	Variant-surface-glycoprotein phospholipase C
PF15337	Vascular protein family Vasculin-like 1
PF14822	Vasohibin
PF08776	VASP tetramerisation domain
PF01992	ATP synthase (C/AC39) subunit
PF01991	ATP synthase (E/31 kDa) subunit
PF01505	Major Vault Protein repeat
PF08913	Vinculin Binding Site
PF13517	Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
PF15231	Variable charge X/Y family
PF08476	Viral D10 N-terminal
PF07137	Violaxanthin de-epoxidase (VDE)
PF09733	VEFS-Box of polycomb protein
PF14554	VEGF heparin-binding domain
PF12107	Plasminogen (Pg) ligand in fibrinolytic pathway
PF10339	Yeast-specific zinc responsive
PF11754	Velvet factor
PF11386	Vitelline envelope receptor for lysin
PF06546	Vertebrate heat shock transcription factor
PF06529	Vertebrate interleukin-3 regulated transcription factor
PF12785	Variant erythrocyte surface antigen-1
PF06326	Vesiculovirus matrix protein
PF12632	Mysoin-binding motif of peroxisomes
PF08432	AAA-ATPase Vps4-associated protein 1
PF08473	Neuronal voltage-dependent calcium channel alpha 2acd
PF12052	Voltage gated calcium channel subunit beta domain 4Aa N terminal
PF15245	Transcription cofactor vestigial-like protein 4
PF07545	Vestigial/Tondu family
PF01847	von Hippel-Lindau disease tumour suppressor protein
PF02209	Villin headpiece domain
PF04001	Transcription factor Vhr1
PF00790	VHS domain
PF04702	Vicilin N terminal region
PF08553	VID27 cytoplasmic protein
PF00559	Retroviral Vif (Viral infectivity) protein
PF14773	Helicase-associated putative binding domain, C-terminal
PF01044	Vinculin family
PF14623	Hint-domain
PF12495	Vegetative insecticide protein 3A N terminal
PF04530	Viral Beta C/D like family
PF00729	Viral coat protein (S domain)
PF08008	Viral cysteine rich
PF02236	Viral DNA-binding protein, all alpha domain
PF00747	ssDNA binding protein
PF03728	Viral DNA-binding protein, zinc binding domain
PF11050	Virus envelope protein E26
PF01443	Viral (Superfamily 1) RNA helicase
PF03225	Viral heat shock protein Hsp90 homologue
PF05515	Viral nucleic acid binding
PF04521	ssRNA positive strand viral 18kD cysteine rich protein
PF08715	Papain like viral protease
PF02407	Putative viral replication protein
PF12187	Viral/Archaeal nuclease
PF05101	Type IV secretory pathway, VirB3-like protein
PF04335	VirB8 protein
PF07015	VirC1 protein
PF07181	VirC2 protein
PF07328	T-DNA border endonuclease VirD1
PF09266	Viral DNA topoisomerase I, N-terminal
PF05272	Virulence-associated protein E
PF12189	Single-strand DNA-binding protein
PF07229	VirE2
PF06661	VirE3
PF08800	VirE N-terminal domain
PF11653	Bacteriophage T7 virion assembly protein
PF06057	Bacterial virulence protein (VirJ)
PF06903	VirK protein
PF13769	Virulence factor
PF13310	Virulence protein RhuM family
PF10139	Putative bacterial virulence factor
PF03631	Virulence factor BrkB
PF10400	Virulence activator alpha C-term
PF08487	Vault protein inter-alpha-trypsin domain
PF01988	VIT family
PF09164	Vitamin D binding protein, domain III
PF10542	Vitelline membrane cysteine-rich region
PF01347	Lipoprotein amino terminal region
PF02621	Menaquinone biosynthesis
PF13757	Vault protein inter-alpha-trypsin domain
PF05090	Vitamin K-dependent gamma-carboxylase
PF07884	Vitamin K epoxide reductase family
PF04649	Mycoplasma hyorhinis VlpA repeat
PF07122	Variable length PCR target protein (VLPT)
PF11712	Endoplasmic reticulum-based factor for assembly of V-ATPase
PF09446	VMA21-like domain
PF01660	Viral methyltransferase
PF08456	Viral methyltransferase C-terminal
PF00695	Major surface antigen from hepadnavirus
PF03517	Regulator of volume decrease after cellular swelling
PF00654	Voltage gated chloride channel
PF03762	Vitelline membrane outer layer protein I (VOMI)
PF07447	Matrix protein VP40
PF08935	Viral protein VP4 subunit
PF00426	Outer Capsid protein VP4 (Hemagglutinin)
PF00434	Glycoprotein VP7
PF09625	VP9 protein
PF07589	PEP-CTERM motif
PF00522	VPR/VPX protein
PF12451	Vacuolar protein sorting protein 11 C terminal
PF04840	Vps16, C-terminal region
PF04841	Vps16, N-terminal region
PF09454	Vps23 core domain
PF03643	Vacuolar protein sorting-associated protein 26
PF03997	VPS28 protein
PF03635	Vacuolar protein sorting-associated protein 35
PF11605	Vacuolar protein sorting protein 36 Vps36
PF10366	Vacuolar sorting protein 39 domain 1
PF10367	Vacuolar sorting protein 39 domain 2
PF09336	Vps4 C terminal oligomerisation domain
PF09325	Vps5 C terminal like
PF08700	Vps51/Vps67
PF04129	Vps52 / Sac2 family
PF04100	Vps53-like, N-terminal
PF07928	Vps54-like protein
PF04133	Vacuolar protein sorting 55
PF12816	Golgi CORVET complex core vacuolar protein 8
PF02204	Vacuolar sorting protein 9 (VPS9) domain
PF00558	Vpu protein
PF11475	Virion protein N terminal domain
PF05678	VQ motif
PF03538	Salmonella virulence plasmid 28.1kDa A protein
PF03536	Salmonella virulence-associated 28kDa protein
PF08774	VRR-NUC domain
PF13206	Trypanosomal VSG domain
PF03302	Giardia variant-specific surface protein
PF03852	DNA mismatch endonuclease Vsr
PF09359	VTC domain
PF00092	von Willebrand factor type A domain
PF10138	vWA found in TerF C terminus
PF14624	VWA / Hh  protein intein-like
PF13519	von Willebrand factor type A domain
PF13768	von Willebrand factor type A domain
PF05762	VWA domain containing CoxE-like protein
PF08399	VWA N-terminal
PF00093	von Willebrand factor type C domain
PF00094	von Willebrand factor type D domain
PF12450	von Willebrand factor
PF01496	V-type ATPase 116kDa subunit family
PF05575	Vibrio cholerae RfbT protein
PF02020	eIF4-gamma/eIF5/eIF2-epsilon
PF06176	Lipopolysaccharide core biosynthesis protein (WaaY)
PF10537	ATP-utilising chromatin assembly and remodelling N-terminal
PF12264	Waikavirus capsid protein 1
PF08488	Wall-associated kinase
PF14380	Wall-associated receptor kinase C-terminal
PF00095	WAP-type (Whey Acidic Protein) 'four-disulfide core'
PF07814	Wings apart-like protein regulation of heterochromatin
PF14746	WASH complex subunit 7, C-terminal
PF14744	WASH complex subunit 7
PF14745	WASH complex subunit 7, N-terminal
PF11945	WAHD domain of WASH complex
PF07507	WavE lipopolysaccharide synthesis
PF12076	WAX2 C-terminal domain
PF11669	WW domain-binding protein 1
PF09429	WW domain binding protein 11
PF08889	WbqC-like protein family
PF15164	Williams-Beuren syndrome chromosomal region 28 protein homologue
PF12589	Methyltransferase involved in Williams-Beuren syndrome
PF03716	WCCH motif
PF05562	Cold acclimation protein WCOR413
PF09765	WD-repeat region
PF00400	WD domain, G-beta repeat
PF14077	Alternative WD40 repeat motif
PF05701	Weak chloroplast movement under blue light
PF03007	Wax ester synthase-like Acyl-CoA acyltransferase domain
PF10273	Pre-rRNA-processing protein TSR2
PF05406	WGR domain
PF14903	WG containing repeat
PF00568	WH1 domain
PF02205	WH2 motif
PF00458	WHEP-TRS domain
PF13305	WHG domain
PF14414	A nuclease of the HNH/ENDO VII superfamily with conserved WHH
PF08528	Whi5 like
PF10298	WhiA N-terminal LAGLIDADG-like domain
PF02467	Transcription factor WhiB
PF15612	WSTF, HB1, Itc1p, MBD9 motif 1
PF15613	WSTF, HB1, Itc1p, MBD9 motif 2
PF15614	WSTF, HB1, Itc1p, MBD9 motif 3
PF08536	Whirly transcription factor
PF07107	Wound-induced protein WI12
PF02019	WIF domain
PF10440	Ubiquitin-binding WIYLD domain
PF08325	WLM domain
PF07861	WisP family N-Terminal Region
PF00110	wnt family
PF08186	Wound-inducible basic protein family
PF13943	WPP domain
PF08879	WRC
PF03106	WRKY DNA -binding domain
PF10206	Mitochondrial F1F0-ATP synthase, subunit f
PF01822	WSC domain
PF03832	WSK motif
PF02206	Domain of unknown function
PF12175	White spot syndrome virus structural envelope protein VP
PF02165	Wilm's tumour protein
PF03303	WTF protein
PF09422	WTX protein
PF14043	WVELL protein
PF00397	WW domain
PF08258	WWamide peptide
PF10349	WW-domain ligand protein
PF02825	WWE domain
PF09688	Protein of unknown function (Wx5_PLAF3D7)
PF06013	Proteins of 100 residues with WXG
PF13731	WxL domain surface cell wall-binding
PF13280	WYL domain
PF08608	Wyosine base formation
PF14524	Wzt C-terminal domain
PF06899	WzyE protein
PF04932	O-Antigen ligase
PF02706	Chain length determinant protein
PF07483	Tryptophan-rich Synechocystis species C-terminal domain
PF00739	Trans-activation protein X
PF07983	X8 domain
PF00860	Permease family
PF04921	XAP5, circadian clock regulator
PF13478	XdhC Rossmann domain
PF02625	XdhC and CoxI family
PF09412	Endoribonuclease XendoU
PF06955	Xyloglucan endo-transglycosylase (XET) C-terminus
PF03894	D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
PF09363	XFP C-terminal domain
PF09364	XFP N-terminal domain
PF03254	Xyloglucan fucosyltransferase
PF03469	XH domain
PF10779	Haemolysin XhlA
PF04555	Restriction endonuclease XhoI
PF08043	Xin repeat
PF08814	XisH protein
PF08869	XisI protein
PF09815	XK-related protein
PF08890	Phage XkdN-like protein
PF09636	XkdW protein
PF09302	XLF (XRCC4-like factor)
PF00193	Extracellular link domain
PF09109	Switch protein XOL-1, GHMP-like
PF09108	Switch protein XOL-1, N-terminal
PF14440	Xanthomonas XOO_2897-like deaminase
PF05181	XPA protein C-terminus
PF01286	XPA protein N-terminal
PF09280	XPC-binding domain
PF00867	XPG I-region
PF12813	XPG domain containing
PF00752	XPG N-terminal domain
PF08389	Exportin 1-like protein
PF01834	XRCC1 N terminal domain
PF06632	DNA double-strand break repair and V(D)J recombination protein XRCC4
PF03159	XRN 5'-3' exonuclease N-terminus
PF03468	XS domain
PF13201	Putative glycoside hydrolase xylanase
PF12529	Xylosyltransferase C terminal
PF06505	Activator of aromatic catabolism
PF02162	XYPPX repeat (two copies)
PF06669	Xylella fastidiosa surface protein related
PF01797	Transposase IS200 like
PF04986	Putative transposase
PF14175	YaaC-like Protein
PF04690	YABBY protein
PF07873	YabP family
PF03895	YadA-like C-terminal region
PF05658	Head domain of trimeric autotransporter adhesin
PF05662	Coiled stalk of trimeric autotransporter adhesin
PF09811	Essential protein Yae1, N terminal
PF07152	YaeQ protein
PF13957	Toxin YafO, type II toxin-antitoxin system
PF06154	YagB/YeeU/YfjZ family
PF02699	Preprotein translocase subunit
PF13308	YARHG domain
PF02575	YbaB/EbfC DNA-binding family
PF10757	Biofilm formation regulator YbaJ
PF07949	YbbR-like protein
PF13982	YbfN-like lipoprotein
PF13985	YbgS-like protein
PF08173	Membrane bound YbgT-like protein
PF11076	Putative inner membrane protein YbhQ
PF11045	Putative inner membrane protein of Enterobacteriaceae
PF10722	Putative bacterial sensory transduction regulator
PF01906	Putative heavy-metal-binding
PF02624	YcaO-like family
PF08664	YcbB domain
PF13993	YccJ-like protein
PF08755	Hemimethylated DNA-binding protein YccV like
PF02618	YceG-like family
PF04264	YceI-like domain
PF05758	Ycf1
PF10705	Chloroplast protein precursor Ycf15 putative
PF10718	Hypothetical chloroplast protein Ycf34
PF02392	Ycf4
PF10674	Protein of unknown function (DUF2488)
PF07444	Ycf66 protein N-terminus
PF01737	YCF9
PF07927	YcfA-like protein
PF05166	YcgL domain
PF07317	Flagellar regulator YcgR
PF12945	Flagellar protein YcgR
PF06071	Protein of unknown function (DUF933)
PF03795	YCII-related domain
PF14317	YcxB-like protein
PF09159	Mitochondrial resolvase Ydc2 / RNA splicing MRS1
PF12127	SigmaW regulon antibacterial
PF14001	YdfZ protein
PF08803	Putative mono-oxygenase ydhR
PF04794	YdjC-like protein
PF14169	Cold-inducible protein YdjO
PF09207	Yeast killer toxin
PF11403	Yeast metallothionein
PF03366	YEATS family
PF13995	YebF-like protein
PF07130	YebG protein
PF13974	YebO-like protein
PF06185	YecM protein
PF13992	YecR-like lipoprotein
PF13987	YedD-like protein
PF13989	YejG-like protein
PF14150	YesK-like protein
PF07437	YfaZ precursor
PF03887	YfbU domain
PF08891	YfcL protein
PF10938	YfdX protein
PF14151	YfhD-like protein
PF14152	YfhE-like protein
PF09586	Bacterial membrane protein YfhO
PF13525	Outer membrane lipoprotein
PF08756	YfkB-like domain
PF14167	YfkD-like protein
PF11181	Heat induced stress protein YflT
PF10787	Uncharacterised protein from bacillus cereus group
PF14118	YfzA-like protein
PF14182	YgaB-like protein
PF11756	Nitrous oxide-stimulated promoter
PF02542	YgbB family
PF02325	YGGT family
PF14148	YhdB-like protein
PF14149	YhfH-like protein
PF10797	Protein of unknown function
PF14503	YhfZ C-terminal domain
PF07947	YhhN-like protein
PF06564	YhjQ protein
PF04945	YHS domain
PF14240	YHYH protein
PF14120	YhzD-like protein
PF05360	yiaA/B two helix domain
PF07907	YibE/F-like protein
PF03755	YicC-like family, N-terminal region
PF14849	YidC periplasmic domain
PF14045	YIEGIA protein
PF03878	YIF1
PF04220	Der GTPase activator (YihI)
PF09500	Putative thioesterase (yiiD_Cterm)
PF04893	Yip1 domain
PF03226	Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
PF11106	Exopolysaccharide production protein YjbE
PF04237	YjbR
PF09639	YjcQ protein
PF13990	YjcZ-like protein
PF03853	YjeF-related protein N-terminus
PF14070	Putative motility protein
PF14588	YjgF/chorismate_mutase-like, putative endoribonuclease
PF03739	Predicted permease YjgP/YjgQ family
PF14168	YjzC-like protein
PF07615	YKOF-related Family
PF03734	L,D-transpeptidase catalytic domain
PF13645	L,D-transpeptidase catalytic domain
PF10388	EAL-domain associated signalling protein domain
PF10368	Putative cell-wall binding lipoprotein
PF14177	YkyB-like protein
PF05764	YL1 nuclear protein
PF08265	YL1 nuclear protein C-terminal domain
PF10777	Inner membrane protein YlaC
PF14036	YlaH-like protein
PF14071	Putative coat protein
PF14003	YlbE-like protein
PF10799	Biofilm formation protein (YliH/bssR)
PF02757	YLP motif
PF11068	YlqD protein
PF14035	YlzJ-like protein
PF12788	YmaF family
PF13277	YmdB-like protein
PF02326	Plant ATP synthase F0
PF10798	Biofilm development protein YmgB/AriR
PF14157	YmzC-like protein
PF14158	YndJ-like protein
PF14002	YniB-like protein
PF14268	YoaP-like
PF13996	YobH-like protein
PF09223	YodA lipocalin-like domain
PF14191	YodL-like
PF10372	Bacterial membrane-spanning protein N-terminus
PF14122	YokU-like protein
PF08863	YolD-like protein
PF09642	YonK protein
PF05844	YopD protein
PF03545	Yersinia virulence determinant (YopE)
PF09020	YopE, N terminal
PF09013	YopH, N-terminal
PF03421	YopJ Serine/Threonine acetyltransferase
PF09025	YopR Core
PF09467	Hypothetical protein Yopt
PF09643	YopX protein
PF14037	YoqO-like protein
PF09629	YorP protein
PF08571	Yos1-like
PF14162	YozD-like protein
PF14620	YpeB sporulation
PF14005	YpjP-like protein
PF09144	Yersinia pseudotuberculosis mitogen
PF14178	YppF-like protein
PF14179	YppG-like protein
PF14139	YpzG-like protein
PF14140	YpzI-like protein
PF09466	Hypothetical protein Yqai
PF09588	YqaJ-like viral recombinase domain
PF14553	YqbF, hypothetical protein domain
PF08892	YqcI/YcgG family
PF09424	Yqey-like protein
PF06898	Putative stage IV sporulation protein YqfD
PF14181	YqfQ-like protein
PF11036	Virulence promoting factor
PF14639	Holliday-junction resolvase-like of SPT6
PF11079	Bacterial protein YqhG of unknown function
PF11085	Conserved membrane protein YqhR
PF13997	YqjK-like protein
PF14038	YqzE-like protein
PF14164	YqzH-like protein
PF14006	YqzL-like protein
PF14141	YqzM-like protein
PF10707	PhoP regulatory network protein YrbL
PF14143	YrhC-like protein
PF14145	YrhK-like protein
PF15493	Domain of unknown function, YrpD
PF14184	Regulatory protein YrvL
PF14142	YrzO-like protein
PF13983	YsaB-like lipoprotein
PF01514	Secretory protein of YscJ/FliF family
PF08345	Flagellar M-ring protein C-terminal
PF06578	YOP proteins translocation protein K (YscK)
PF07321	Type III secretion protein YscO
PF09619	Type III secretion system lipoprotein chaperone (YscW)
PF04650	YSIRK type signal peptide
PF09695	Bacterial protein of unknown function (YtfJ_HI0045)
PF04146	YT521-B-like domain
PF13115	YtkA-like
PF10355	Protein of unknown function (Ytp1)
PF14007	YtpI-like protein
PF07639	YTV
PF08812	YtxC-like family
PF12732	YtxH-like protein
PF14165	YtzH-like protein
PF14166	YueH-like protein
PF08868	YugN-like family
PF14068	Putative membrane protein
PF10140	WXG100 protein secretion system (Wss), protein YukC
PF08817	WXG100 protein secretion system (Wss), protein YukD
PF14039	YusW-like protein
PF14115	YuzL-like protein
PF11724	YvbH-like oligomerisation region
PF09628	YvfG protein
PF12841	YvrJ protein family
PF14293	YWFCY protein
PF08741	YwhD family
PF14256	YwiC-like protein
PF14183	YwpF-like protein
PF14431	YwqJ-like deaminase
PF14176	YxiJ-like protein
PF12779	YXWGXW repeat (2 copies)
PF14174	YycC-like protein
PF07435	YycH protein
PF09648	YycH protein
PF14116	YyzF-like protein
PF00102	Protein-tyrosine phosphatase
PF03162	Tyrosine phosphatase family
PF13350	Tyrosine phosphatase family
PF13348	Tyrosine phosphatase family C-terminal region
PF07495	Y_Y_Y domain
PF02295	Adenosine deaminase z-alpha domain
PF10593	Z1 domain
PF05164	Cell division protein ZapA
PF08632	Activator of mitotic machinery Cdc14 phosphatase activation C-term
PF05928	Zea mays MURB-like protein (MuDR)
PF01559	Zein seed storage protein
PF04576	Zein-binding
PF06414	Zeta toxin
PF13695	Zinc-binding domain
PF10497	Zinc-finger domain of monoamine-oxidase A repressor R1
PF01754	A20-like zinc finger
PF07776	Zinc-finger associated domain (zf-AD)
PF01428	AN1-like Zinc finger
PF12861	Anaphase-promoting complex subunit 11 RING-H2 finger
PF02892	BED zinc finger
PF00643	B-box zinc finger
PF00096	Zinc finger, C2H2 type
PF12756	C2H2 type zinc-finger (2 copies)
PF13878	zinc-finger of acetyl-transferase ESCO
PF13894	C2H2-type zinc finger
PF13912	C2H2-type zinc finger
PF15269	Zinc-finger
PF12171	Zinc-finger double-stranded RNA-binding
PF01530	Zinc finger, C2HC type
PF06221	Putative zinc finger motif, C2HC5-type
PF13913	zinc-finger of a C2HC-type
PF10650	Putative zinc-finger domain
PF07967	C3HC zinc finger-like
PF13891	Potential DNA-binding domain
PF00097	Zinc finger, C3HC4 type (RING finger)
PF13923	Zinc finger, C3HC4 type (RING finger)
PF13920	Zinc finger, C3HC4 type (RING finger)
PF15227	zinc finger of C3HC4-type, RING
PF00105	Zinc finger, C4 type (two domains)
PF10146	Zinc finger-containing protein
PF14260	C4-type zinc-finger of DNA polymerase delta
PF06689	ClpX C4-type zinc finger
PF01396	Topoisomerase DNA binding C4 zinc finger
PF02928	C5HC2 zinc finger
PF00642	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
PF14608	Zinc finger C-x8-C-x5-C-x3-H type
PF00098	Zinc knuckle
PF13696	Zinc knuckle
PF13917	Zinc knuckle
PF14392	Zinc knuckle
PF14787	GAG-polyprotein viral zinc-finger
PF15288	Zinc knuckle
PF10283	Zinc-finger (CX5CX6HX5H) motif
PF09360	Iron-binding zinc finger CDGSH type
PF11706	CGNR zinc finger
PF01807	CHC2 zinc finger
PF10276	Zinc-finger domain
PF05495	CHY zinc finger
PF12269	CpG binding protein zinc finger C terminal domain
PF05207	CSL zinc finger
PF07496	CW-type Zinc Finger
PF02008	CXXC zinc finger domain
PF07535	DBF zinc finger
PF01529	DHHC palmitoyltransferase
PF05605	Drought induced 19 protein (Di19), zinc-binding
PF08996	DNA Polymerase alpha zinc finger
PF05180	DNL zinc finger
PF02701	Dof domain, zinc finger
PF01258	Prokaryotic dksA/traR C4-type zinc finger
PF06467	MYM-type Zinc finger with FCS sequence motif
PF06827	Zinc finger found in FPG and IleRS
PF06839	GRF zinc finger
PF09337	His(2)-Cys(2) zinc finger
PF13465	Zinc-finger double domain
PF13909	C2H2-type zinc-finger domain
PF13490	Putative zinc-finger
PF13771	PHD-like zinc-binding domain
PF13832	PHD-zinc-finger like domain
PF04770	ZF-HD protein dimerisation region
PF05551	Zinc-binding loop region of homing endonuclease
PF04438	HIT zinc finger
PF07503	HypF finger
PF13005	zinc-finger binding domain of transposase IS66
PF14690	zinc-finger of transposase IS204/IS1001/IS1096/IS1165
PF04071	Cysteine-rich small domain
PF10601	LITAF-like zinc ribbon domain
PF06943	LSD1 zinc finger
PF08790	LYAR-type C2HC zinc finger
PF12874	Zinc-finger of C2H2 type
PF12907	Zinc-binding
PF02891	MIZ/SP-RING zinc finger
PF13824	Zinc-finger of mitochondrial splicing suppressor 51
PF01753	MYND finger
PF09297	NADH pyrophosphatase zinc ribbon domain
PF05741	Nanos RNA binding domain
PF01422	NF-X1 type zinc finger
PF05020	NPL4 family, putative zinc binding region
PF11789	Zinc-finger of the MIZ type in Nse subunit
PF03854	P-11 zinc finger
PF13008	Zinc-binding domain of Paramyxoviridae V protein
PF00645	Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
PF15446	PHD/FYVE-zinc-finger like domain
PF05715	Piccolo Zn-finger
PF09329	Primase zinc finger
PF10426	Recombination-activating protein 1 zinc-finger domain
PF00641	Zn-finger in Ran binding protein and others
PF12678	RING-H2 zinc finger
PF13248	zinc-ribbon domain
PF08746	RING-like domain
PF13639	Ring finger domain
PF14369	zinc-finger
PF14570	RING/Ubox like zinc-binding domain
PF14634	zinc-RING finger domain
PF14835	zf-RING of BARD1-type protein
PF13445	RING-type zinc-finger
PF08080	RNPHF zinc finger
PF13966	zinc-binding in reverse transcriptase
PF13866	SAP30 zinc-finger
PF04810	Sec23/Sec24 zinc finger
PF12251	snRNA-activating protein of 50kDa MW C terminal
PF02135	TAZ zinc finger
PF14952	Putative treble-clef, zinc-finger, Zn-binding
PF13453	Transcription factor zinc-finger
PF12660	Putative zinc-finger of transcription factor IIIC complex
PF02953	Tim10/DDP family zinc finger
PF02176	TRAF-type zinc finger
PF13451	Probable zinc-binding domain
PF11722	CCCH zinc finger in TRM13 protein
PF06220	U1 zinc finger
PF05253	U11-48K-like CHHC zinc finger
PF02148	Zn-finger in ubiquitin-hydrolases and other protein
PF02207	Putative zinc finger in N-recognin (UBR box)
PF14569	Zinc-binding RING-finger
PF03470	XS zinc finger domain
PF03367	ZPR1 zinc-finger domain
PF04704	Zfx / Zfy transcription activation region
PF07191	zinc-ribbons
PF13240	zinc-ribbon domain
PF13717	zinc-ribbon domain
PF13719	zinc-ribbon domain
PF14599	Zinc-ribbon
PF02535	ZIP Zinc transporter
PF04354	ZipA, C-terminal FtsZ-binding domain
PF09723	Zinc ribbon domain
PF00172	Fungal Zn(2)-Cys(6) binuclear cluster domain
PF00882	Zinc dependent phospholipase C
PF04228	Putative neutral zinc metallopeptidase
PF04298	Putative neutral zinc metallopeptidase
PF05618	Putative ATP-dependant zinc protease
PF12674	Putative zinc ribbon domain
PF13408	Recombinase zinc beta ribbon domain
PF03811	InsA N-terminal domain
PF12760	Transposase zinc-ribbon domain
PF14319	Transposase zinc-binding domain
PF00100	Zona pellucida-like domain
PF05707	Zonular occludens toxin (Zot)
PF00791	ZU5 domain
PF06248	Centromere/kinetochore Zw10
PF15556	ZW10 interactor
PF05884	Interactor of ZYG-11
PF00569	Zinc finger, ZZ type
