hmm2gff.py traitar_out/annotation/pfam/Listeria_ivanovii_WSLC3009_filtered_best.dat  traitar_out/phenotype_prediction/phypat/feat_gffs/ Listeria_ivanovii_WSLC3009  /home/aaron/traitar/traitar/data/models/phypat.tar.gz 8556,8567,8549,8548,8558,8489,8536,8537,8540,8550,8545,8530,8566,8563,8510,8488,8477,8524,8534,8517,8498,8486,8562,8478 --gene_gff ./1457190.3.RefSeq.gff --gene_gff_type refseq
hmm2gff.py traitar_out/annotation/pfam/Listeria_ivanovii_WSLC3009_filtered_best.dat  traitar_out/phenotype_prediction/phypat/feat_gffs/ Listeria_ivanovii_WSLC3009  /home/aaron/traitar/traitar/data/models/phypat+PGL.tar.gz 8556,8567,8549,8548,8558,8489,8536,8537,8540,8550,8545,8530,8566,8563,8510,8488,8477,8524,8534,8517,8498,8486,8562,8478 --gene_gff ./1457190.3.RefSeq.gff --gene_gff_type refseq
hmm2gff.py traitar_out/annotation/pfam/Listeria_grayi_DSM_20601_filtered_best.dat  traitar_out/phenotype_prediction/phypat/feat_gffs/ Listeria_grayi_DSM_20601  /home/aaron/traitar/traitar/data/models/phypat.tar.gz 8556,8567,8494,8549,8548,8558,8489,8537,8526,8540,8550,8530,8533,8547,8563,8510,8488,8477,8524,8534,8498,8486,8562,8478 --gene_gff ./525367.9.RefSeq.gff --gene_gff_type refseq
hmm2gff.py traitar_out/annotation/pfam/Listeria_grayi_DSM_20601_filtered_best.dat  traitar_out/phenotype_prediction/phypat/feat_gffs/ Listeria_grayi_DSM_20601  /home/aaron/traitar/traitar/data/models/phypat+PGL.tar.gz 8556,8567,8494,8549,8548,8558,8489,8537,8526,8540,8550,8530,8533,8547,8563,8510,8488,8477,8524,8534,8498,8486,8562,8478 --gene_gff ./525367.9.RefSeq.gff --gene_gff_type refseq