Metadata-Version: 2.1
Name: subsample-fastas
Version: 0.0.0
Summary: Randomly alter fasta files by substracting a given % of genes in a genome (fasta) or in a (% of a) set of genomes 
Home-page: https://gitlab.inria.fr/pleiade/python-subsample_fastas
Author: Clémence Frioux
Author-email: clemence.frioux@inria.fr
License: CeCILL 2.1 Free Software License
Project-URL: Changelog, https://gitlab.inria.fr/pleiade/python-subsample_fastas/blob/master/CHANGELOG.md
Project-URL: Issue Tracker, https://gitlab.inria.fr/pleiade/python-subsample_fastas/issues
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: CEA CNRS Inria Logiciel Libre License, version 2.1 (CeCILL-2.1)
Classifier: Operating System :: Unix
Classifier: Operating System :: POSIX
Classifier: Operating System :: Microsoft :: Windows
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3.7
Classifier: Topic :: Utilities
Requires-Python: >=3.7
Requires-Dist: biopython (>=1.76)
Requires-Dist: pytest

# Overview

Randomly alter fasta files by substracting a given % of genes in a genome (fasta) or in a (% of a) set of genomes

  - Free software: CeCILL 2.1 Free Software License

## Installation

    pip install subsample-fastas

## Documentation


To use the project:

``` python
import subsample_fastas
subsample_fastas.longest()
```



## Development

To run the all tests run:

    tox

Note, to combine the coverage data from all the tox environments run:

<table>
<colgroup>
<col style="width: 10%" />
<col style="width: 90%" />
</colgroup>
<tbody>
<tr class="odd">
<td>Windows</td>
<td><pre><code>set PYTEST_ADDOPTS=--cov-append
tox</code></pre></td>
</tr>
<tr class="even">
<td>Other</td>
<td><pre><code>PYTEST_ADDOPTS=--cov-append tox</code></pre></td>
</tr>
</tbody>
</table>

# Changelog

All notable changes to this project will be documented in this file.

The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [Unreleased] - 0.0.0 (\<TODAY\>) ------------------

  - Work in progress


