MANIFEST.in
README.md
setup.py
densecall/LICENCE.txt
densecall/__init__.py
densecall/__main__.py
densecall/aligner.py
densecall/data.py
densecall/io.py
densecall/mod_util.py
densecall/multiprocessing.py
densecall/reader.py
densecall/requirements.txt
densecall/schedule.py
densecall/training.py
densecall/util.py
densecall.egg-info/PKG-INFO
densecall.egg-info/SOURCES.txt
densecall.egg-info/dependency_links.txt
densecall.egg-info/entry_points.txt
densecall.egg-info/not-zip-safe
densecall.egg-info/requires.txt
densecall.egg-info/top_level.txt
densecall/asr/__init__.py
densecall/asr/basecall.py
densecall/asr/ctcdecode.py
densecall/asr/model.py
densecall/asr/model_.py
densecall/asr/plot_attention_heatmap.py
densecall/cli/__init__.py
densecall/cli/accuracy.py
densecall/cli/basecaller.py
densecall/cli/classify.py
densecall/cli/convert.py
densecall/cli/download.py
densecall/cli/lm.py
densecall/cli/rnalm.py
densecall/cli/sigmap.py
densecall/cli/to_taiyaki.py
densecall/cli/train.py
densecall/conformer/__init__.py
densecall/conformer/basecall.py
densecall/conformer/cgmlp.py
densecall/conformer/conv.py
densecall/conformer/criterion.py
densecall/conformer/flash.py
densecall/conformer/greedy_decode.py
densecall/conformer/linformer.py
densecall/conformer/modcall.py
densecall/conformer/model.py
densecall/conformer/modules.py
densecall/conformer/nn.py
densecall/conformer/optimize.py
densecall/conformer/reversible.py
densecall/conformer/util.py
densecall/lm/__init__.py
densecall/lm/backbone.py
densecall/lm/lm.py
densecall/lm/model.py
densecall/lm/posttrain.py
densecall/lm/predict_genome.py
densecall/lm/pretrain.py
densecall/lm/schedule.py
densecall/lm/utils.py
densecall/microbiome/__init__.py
densecall/microbiome/comparison.py
densecall/microbiome/core.py
densecall/microbiome/evaluation.py
densecall/microbiome/gendata.py
densecall/microbiome/genome_sampling.py
densecall/microbiome/label.py
densecall/microbiome/model.py
densecall/microbiome/precision.py
densecall/microbiome/predict.py
densecall/microbiome/split.py
densecall/microbiome/train.py
densecall/microbiome/utils.py
densecall/models/configs/conformer.toml
densecall/models/configs/conformer_rna.toml
densecall/models/configs/hybrid_transformer.toml
densecall/models/configs/hybrid_transformer_dna.toml
densecall/rnalm/__init__.py
densecall/rnalm/analysis.py
densecall/rnalm/backbone.py
densecall/rnalm/data_maker.py
densecall/rnalm/data_maker_m6a.py
densecall/rnalm/lmy.py
densecall/rnalm/model.py
densecall/rnalm/schedule.py
densecall/rnalm/train_splice_m6a.py
densecall/rnalm/utils.py
densecall/scripts/m6a_benchmark_complete.py
densecall/scripts/plot_m6a_comparison.py