Metadata-Version: 2.1
Name: headctools
Version: 0.15
Summary: A set of tools for preproccessing and performing brain segmentation and skull reconstruction on head CT images
Home-page: https://gitlab.com/matzkin/headctools
Author: ['Franco Matzkin']
Author-email: fmatzkin@sinc.unl.edu.ar
License: MIT
Description: ![headctools](headctools/assets/imgs/logo/bright-bg-stroke.svg)
        
        This tool includes a bunch of algorithms for preprocessing CT images & 
        PyTorch based models for performing brain segmentation or skull 
        reconstruction on craniectomy images.
        
        The implemented convolutional neural networks are based on the [U-Net](https://arxiv.org/abs/1505.04597) model,
        which was adapted to these particular problems.
        
        ### Requirements
        
        You should have Python 3.7+ installed in your system. If you are using the 
        registrarion commands, you should manually install [FSL](https://fsl.fmrib.ox.ac.uk)
        
        #### Package install 
        
        For installing the package using pip, run the following command:
        
        ```sh
        pip install headctools
        ```
        
        You can check some usage examples in the [colab notebook](https://colab.research.google.com/drive/16i30BKtAfA1D9NLVs26ddjs87tmiU6xR?usp=sharing) 
        and the [readthedocs page](https://headctools.readthedocs.io/en/latest/).
        
        ### Citing our work
        
        If you have found this repo useful, please consider citing our work
        
        ```
        @incollection{Matzkin2020,
          doi = {10.1007/978-3-030-59713-9_38},
          url = {https://doi.org/10.1007/978-3-030-59713-9_38},
          year = {2020},
          publisher = {Springer International Publishing},
          pages = {390--399},
          author = {Franco Matzkin and Virginia Newcombe and Susan Stevenson and Aneesh Khetani and Tom Newman and Richard Digby and Andrew Stevens and Ben Glocker and Enzo Ferrante},
          title = {Self-supervised Skull Reconstruction in Brain {CT} Images with Decompressive Craniectomy},
          booktitle = {Medical Image Computing and Computer Assisted Intervention {\textendash} {MICCAI} 2020}
        }
        ```
        
        Project logo icons made by Pixel perfect from [www.flaticon.com](www.flaticon.com)
Keywords: headctools, deep-brain-extractor
Platform: UNKNOWN
Description-Content-Type: text/markdown
