Metadata-Version: 2.1
Name: gpmicrobiome
Version: 1.0.0
Summary: Temporal probabilistic modeling of bacterial compositions derived from 16S rRNA sequencing
Home-page: https://github.com/tare/GPMicrobiome
License: MIT
Author: Tarmo Äijö
Author-email: tarmo.aijo@gmail.com
Requires-Python: >=3.10,<4.0
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.13
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Provides-Extra: examples
Requires-Dist: ipywidgets (>=8.1.1,<9.0.0) ; extra == "examples"
Requires-Dist: jax (<0.4.34)
Requires-Dist: jaxlib (<0.4.34)
Requires-Dist: jupyterlab (>=4.0.8,<5.0.0) ; extra == "examples"
Requires-Dist: matplotlib (>=3.8.1,<4.0.0) ; extra == "examples"
Requires-Dist: numpyro (>=0.15,<0.16)
Requires-Dist: pandas (>=2,<3)
Requires-Dist: scipy (>=1.14,<2.0)
Project-URL: Bug Tracker, https://github.com/tare/GPMicrobiome/issues
Project-URL: Repository, https://github.com/tare/GPMicrobiome
Description-Content-Type: text/markdown

# GPMicrobiome

Temporal probabilistic modeling of bacterial compositions derived from 16S rRNA sequencing.

## Installation

### PyPI

```console
$ pip install gpmicrobiome
```

### GitHub

Install the version from the main branch as follows

```console
$ pip install git+https://github.com/tare/GPMicrobiome.git
```

## Usage

Please see [this](examples/basic_usage.ipynb) tutorial.

