Package csb :: Package bio |
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# Package bio

source code

Core bioinformatics abstractions and I/O.

Submodules
csb.bio.fragments: APIs for working with protein structure fragments and libraries. csb.bio.fragments.rosetta: Rosetta fragment libraries. csb.bio.hmm: HHpred and Hidden Markov Model APIs. csb.bio.hmm.pseudocounts csb.bio.io: I/O for various biological file formats. csb.bio.io.clans: Classes for parsing/manipulating/writing CLANS (by Tancred Frickey) files csb.bio.io.cs: Simple NMR STAR chemical shift readers. csb.bio.io.dssp: DSSP Parser csb.bio.io.fasta: FASTA format sequence I/O. csb.bio.io.hhpred: HHpred-related format parsers. csb.bio.io.mrc: Cryo-EM density map I/O csb.bio.io.noe: Simple XEASY and Sparky peak list parsers. csb.bio.io.procheck: Procheck parser csb.bio.io.psipred: PSIPRED Parser csb.bio.io.svg: Build SVG diagrams from various csb objects. csb.bio.io.vasco: VASCO Chemical Shift format parser. csb.bio.io.whatif: Simple WhatIf/WhatCheck Summary parser csb.bio.io.wwpdb: PDB structure parsers, format builders and database providers. csb.bio.nmr: NMR related objects. csb.bio.sequence: Sequence and sequence alignment APIs. csb.bio.sequence.alignment: Collection of sequence alignment algorithms. csb.bio.structure: 3D and secondary structure APIs. csb.bio.utils: Computational utility functions.