CHANGELOG.md
CLAUDE.md
Fiji_imageJ_mcp.code-workspace
LICENSE
MANIFEST.in
README.md
RELEASE_NOTES_v0.1.0.md
RELEASE_NOTES_v0.1.1.md
RELEASING.md
install.sh
pyproject.toml
scripts/demo_fiji_mcp_session.py
scripts/generate_image_analysis_report.py
scripts/generate_readme_demo_assets.py
scripts/install_fiji_mcp.py
scripts/mcp_and_gui_fiji.py
src/fiji_mcp/__init__.py
src/fiji_mcp/__main__.py
src/fiji_mcp/fiji_bridge.py
src/fiji_mcp/mcp_instance.py
src/fiji_mcp/py.typed
src/fiji_mcp/server.py
src/fiji_mcp/cli/__init__.py
src/fiji_mcp/cli/install.py
src/fiji_mcp/config/__init__.py
src/fiji_mcp/config/settings.py
src/fiji_mcp/data/__init__.py
src/fiji_mcp/data/macro_templates.json
src/fiji_mcp/schemas/__init__.py
src/fiji_mcp/schemas/tool_outputs.py
src/fiji_mcp/tools/__init__.py
src/fiji_mcp/tools/discovery.py
src/fiji_mcp/tools/macro_runner.py
src/fiji_mcp/tools/screenshot.py
src/fiji_mcp/tools/structured_tools.py
src/fiji_mcp/tools/workflow.py
src/fiji_mcp/utils/__init__.py
src/fiji_mcp/utils/error_handler.py
src/fiji_mcp/utils/fastmcp_context_compat.py
src/fiji_mcp/utils/image_compare.py
src/fiji_mcp/utils/java_errors.py
src/fiji_mcp/utils/optimizer.py
src/fiji_mcp/utils/path_policy.py
src/fiji_mcp/utils/result_parser.py
src/fiji_mcp/utils/server_logging.py
src/fiji_mcp/utils/session_state.py
src/fiji_mcp/utils/template_catalog.py
src/fiji_mcp_server.egg-info/PKG-INFO
src/fiji_mcp_server.egg-info/SOURCES.txt
src/fiji_mcp_server.egg-info/dependency_links.txt
src/fiji_mcp_server.egg-info/entry_points.txt
src/fiji_mcp_server.egg-info/requires.txt
src/fiji_mcp_server.egg-info/top_level.txt