.git-blame-ignore-revs
.gitignore
.pre-commit-config.yaml
LICENSE
README.md
pyproject.toml
setup.cfg
setup.py
tox.ini
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/documentation.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/pytests.yml
.github/workflows/test_and_deploy.yml
docs/README.md
docs/__init__.py
docs/calibration-guide.md
docs/data-schema.md
docs/development-guide.md
docs/microscope-installation-guide.md
docs/napari-plugin-guide.md
docs/reconstruction-guide.md
docs/software-installation-guide.md
docs/images/HSV_legend.png
docs/images/JCh_Color_legend.png
docs/images/JCh_legend.png
docs/images/acq_finished.png
docs/images/acquire_buttons.png
docs/images/acquisition_settings.png
docs/images/advanced.png
docs/images/cap_bg.png
docs/images/cli_structure.png
docs/images/comms_video_screenshot.png
docs/images/connect_to_mm.png
docs/images/create_group.png
docs/images/create_group_voltage.png
docs/images/create_preset.png
docs/images/create_preset_voltage.png
docs/images/general_reconstruction_settings.png
docs/images/ideal_plot.png
docs/images/modulation.png
docs/images/no-overlay.png
docs/images/overlay-demo.png
docs/images/overlay.png
docs/images/phase_reconstruction_settings.png
docs/images/poincare_swing.svg
docs/images/recOrder_Fig1_Overview.png
docs/images/recOrder_plugin_logo.png
docs/images/run_calib.png
docs/images/run_port.png
examples/README.md
examples/birefringence-and-phase.yml
examples/birefringence.yml
examples/fluorescence.yml
examples/phase.yml
recOrder/__init__.py
recOrder/_version.py
recOrder/napari.yaml
recOrder/acq/__init__.py
recOrder/acq/acq_functions.py
recOrder/acq/acquisition_workers.py
recOrder/calib/Calibration.py
recOrder/calib/Optimization.py
recOrder/calib/__init__.py
recOrder/calib/calibration_workers.py
recOrder/cli/apply_inverse_models.py
recOrder/cli/apply_inverse_transfer_function.py
recOrder/cli/compute_transfer_function.py
recOrder/cli/main.py
recOrder/cli/option_eat_all.py
recOrder/cli/parsing.py
recOrder/cli/printing.py
recOrder/cli/reconstruct.py
recOrder/cli/settings.py
recOrder/cli/utils.py
recOrder/io/__init__.py
recOrder/io/_reader.py
recOrder/io/core_functions.py
recOrder/io/metadata_reader.py
recOrder/io/utils.py
recOrder/plugin/__init__.py
recOrder/plugin/gui.py
recOrder/plugin/gui.ui
recOrder/plugin/main_widget.py
recOrder/scripts/__init__.py
recOrder/scripts/launch_napari.py
recOrder/scripts/repeat-cal-acq-rec.py
recOrder/scripts/repeat-calibration.py
recOrder/scripts/samples.py
recOrder/tests/conftest.py
recOrder/tests/acq_tests/test_acq.py
recOrder/tests/calibration_tests/test_calibration.py
recOrder/tests/cli_tests/test_cli.py
recOrder/tests/cli_tests/test_compute_tf.py
recOrder/tests/cli_tests/test_reconstruct.py
recOrder/tests/cli_tests/test_settings.py
recOrder/tests/mmcore_tests/test_core_func.py
recOrder/tests/util_tests/test_create_empty.py
recOrder/tests/util_tests/test_io.py
recOrder/tests/util_tests/test_overlays.py
recOrder/tests/widget_tests/test_dock_widget.py
recOrder/tests/widget_tests/test_sample_contributions.py
recOrder_napari.egg-info/PKG-INFO
recOrder_napari.egg-info/SOURCES.txt
recOrder_napari.egg-info/dependency_links.txt
recOrder_napari.egg-info/entry_points.txt
recOrder_napari.egg-info/requires.txt
recOrder_napari.egg-info/top_level.txt