LICENSE
README.md
pyproject.toml
src/pi_metaboqc.egg-info/PKG-INFO
src/pi_metaboqc.egg-info/SOURCES.txt
src/pi_metaboqc.egg-info/dependency_links.txt
src/pi_metaboqc.egg-info/requires.txt
src/pi_metaboqc.egg-info/top_level.txt
src/pimqc/__init__.py
src/pimqc/constants.py
src/pimqc/pipeline.py
src/pimqc/config/__init__.py
src/pimqc/config/resolution.py
src/pimqc/config/schema.py
src/pimqc/core/__init__.py
src/pimqc/core/model.py
src/pimqc/dataset/__init__.py
src/pimqc/dataset/builder.py
src/pimqc/io/__init__.py
src/pimqc/io/config.py
src/pimqc/io/filesystem.py
src/pimqc/plotting/__init__.py
src/pimqc/plotting/annotation_layout.py
src/pimqc/plotting/base.py
src/pimqc/plotting/colors.py
src/pimqc/plotting/components.py
src/pimqc/plotting/dataset.py
src/pimqc/plotting/heatmap.py
src/pimqc/plotting/plot_utils.py
src/pimqc/plotting/sample_structure.py
src/pimqc/plotting/theme.py
src/pimqc/plotting/assessment/__init__.py
src/pimqc/plotting/assessment/control_charts.py
src/pimqc/plotting/assessment/dashboards.py
src/pimqc/plotting/assessment/heatmaps.py
src/pimqc/plotting/assessment/outliers.py
src/pimqc/plotting/assessment/pca.py
src/pimqc/plotting/assessment/plotter.py
src/pimqc/plotting/correction/__init__.py
src/pimqc/plotting/correction/dashboards.py
src/pimqc/plotting/correction/diagnostics.py
src/pimqc/plotting/correction/internal_standards.py
src/pimqc/plotting/correction/plotter.py
src/pimqc/plotting/correction/scorecards.py
src/pimqc/plotting/filtering/__init__.py
src/pimqc/plotting/filtering/dashboards.py
src/pimqc/plotting/filtering/diagnostics.py
src/pimqc/plotting/filtering/flowchart.py
src/pimqc/plotting/filtering/plotter.py
src/pimqc/plotting/imputation/__init__.py
src/pimqc/plotting/imputation/dashboards.py
src/pimqc/plotting/imputation/diagnostics.py
src/pimqc/plotting/imputation/plotter.py
src/pimqc/plotting/imputation/scorecards.py
src/pimqc/plotting/normalization/__init__.py
src/pimqc/plotting/normalization/dashboards.py
src/pimqc/plotting/normalization/diagnostics.py
src/pimqc/plotting/normalization/plotter.py
src/pimqc/plotting/normalization/scorecards.py
src/pimqc/processing/__init__.py
src/pimqc/processing/methods.py
src/pimqc/processing/stage.py
src/pimqc/processing/assessment/__init__.py
src/pimqc/processing/assessment/analysis.py
src/pimqc/processing/assessment/runner.py
src/pimqc/processing/correction/__init__.py
src/pimqc/processing/correction/algorithms.py
src/pimqc/processing/correction/analysis.py
src/pimqc/processing/correction/methods.py
src/pimqc/processing/correction/regression.py
src/pimqc/processing/correction/runner.py
src/pimqc/processing/correction/ruv.py
src/pimqc/processing/correction/serrf.py
src/pimqc/processing/correction/waveica.py
src/pimqc/processing/filtering/__init__.py
src/pimqc/processing/filtering/analysis.py
src/pimqc/processing/filtering/runner.py
src/pimqc/processing/imputation/__init__.py
src/pimqc/processing/imputation/analysis.py
src/pimqc/processing/imputation/methods.py
src/pimqc/processing/imputation/runner.py
src/pimqc/processing/normalization/__init__.py
src/pimqc/processing/normalization/analysis.py
src/pimqc/processing/normalization/methods.py
src/pimqc/processing/normalization/runner.py
src/pimqc/reporting/__init__.py
src/pimqc/reporting/models.py
src/pimqc/reporting/utils.py
src/pimqc/resources/demo/pipeline_parameters.json
src/pimqc/resources/demo/pipeline_parameters.toml
src/pimqc/resources/demo/project_intensity.csv
src/pimqc/resources/demo/project_meta.csv
src/pimqc/runtime/__init__.py
src/pimqc/runtime/environment.py
src/pimqc/runtime/logging.py
src/pimqc/runtime/progress.py
src/pimqc/runtime/timing.py
src/pimqc/statistics/__init__.py
src/pimqc/statistics/metrics.py
src/pimqc/statistics/pca.py
src/pimqc/statistics/sample_structure.py
src/pimqc/statistics/selection.py
src/pimqc/templates/report_brief.md.j2
src/pimqc/templates/report_comprehensive.md.j2