.coveragerc
.gitattributes
.gitignore
LICENSE
MANIFEST.in
Makefile
README.md
pyproject.toml
requirements-dev.txt
requirements.txt
.github/workflows/codeql-analysis.yml
.github/workflows/documentation.yml
.github/workflows/pythonpackage.yml
.github/workflows/pythonpublish.yml
docs/Makefile
docs/conf.py
docs/index.rst
docs/make.bat
docs/modules.rst
docs/ms_mint.rst
docs/readme.rst
docs/requirements.txt
docs/_templates/layout.html
images/coverage.svg
images/hierarchical-clustering.png
images/peak-shapes.png
images/results-example.png
notebooks/Chromatogram.ipynb
notebooks/Example-plotting.ipynb
notebooks/Example-run-mint.ipynb
notebooks/pca-cumulative-variance.png
notebooks/img/chromatograms.png
notebooks/img/hierarchical_clustering.png
notebooks/img/metabolomics-data-2D-histogram.png
notebooks/img/pca-cumulative-variance.png
notebooks/img/pca-pairplot.png
notebooks/img/peak-shapes-before-opt.png
notebooks/input/metadata.csv
notebooks/input/results.csv
notebooks/input/results.parquet
notebooks/input/targets.csv
src/ms_mint/Chromatogram.py
src/ms_mint/Mint.py
src/ms_mint/MintPlotter.py
src/ms_mint/TargetOptimizer.py
src/ms_mint/__init__.py
src/ms_mint/_version.py
src/ms_mint/filelock.py
src/ms_mint/filters.py
src/ms_mint/io.py
src/ms_mint/matplotlib_tools.py
src/ms_mint/notebook.py
src/ms_mint/pca.py
src/ms_mint/plotly_tools.py
src/ms_mint/processing.py
src/ms_mint/standards.py
src/ms_mint/targets.py
src/ms_mint/tools.py
src/ms_mint/version.py
src/ms_mint.egg-info/PKG-INFO
src/ms_mint.egg-info/SOURCES.txt
src/ms_mint.egg-info/dependency_links.txt
src/ms_mint.egg-info/entry_points.txt
src/ms_mint.egg-info/requires.txt
src/ms_mint.egg-info/top_level.txt
src/ms_mint/scripts/__init__.py
src/ms_mint/scripts/ms_mint_convert.py
tests/paths.py
tests/test__Mint.py
tests/test__chromatogram.py
tests/test__convert_ms_file_to_feather.py
tests/test__export_and_load.py
tests/test__filelock.py
tests/test__integrate_peaks_from_filename.py
tests/test__integration.py
tests/test__io.py
tests/test__matplotlib_tools.py
tests/test__notebook.py
tests/test__pca.py
tests/test__plotly_tools.py
tests/test__processing.py
tests/test__run_skips_broken_files.py
tests/test__targets.py
tests/test__tools.py
tests/data/broken/broken.mzXML
tests/data/ms_files/HILICNeg15_StdH1.mzML
tests/data/ms_files/HILICNeg15_StdH1.mzXML
tests/data/ms_files/example-neg.mzML
tests/data/ms_files/example-pos.mzML
tests/data/ms_files/test-pos.mzMLb
tests/data/ms_files/test.feather
tests/data/ms_files/test.mzML
tests/data/ms_files/test.mzXML
tests/data/ms_files/thermo-parser-pos-ion-example.parquet
tests/data/results/example-results.csv
tests/data/results/test_peak_area_results.csv
tests/data/targets/broken.mzXML
tests/data/targets/example_peaklist.csv
tests/data/targets/formulas__HILICNeg15_StdH1.csv
tests/data/targets/v0.csv
tests/data/targets/v0.xlsx
tests/data/targets/v1.csv
tests/data/targets/v2__HILICNeg15_StdH1_min.csv
tests/data/targets/v2__HILICNeg15_StdH1_sec.csv