Metadata-Version: 2.1
Name: icgc_survival
Version: 0.2.3
Summary: A framework for survival prediction and analysis of ICGC datasets
Home-page: https://github.com/julianspaeth/icgc-survival
Author: Julian Späth
Author-email: spaethju@posteo.de
License: MIT License
Download-URL: https://github.com/julianspaeth/icgc-survival/archive/v0.1.tar.gz
Description: # Random Survival Forest
        
        The ICGC-survival package provides an easy oppurtinity to perform survival prediction on ICGC datasets.
        
        ## Installation
        ```sh
        $ pip install icgc-survival
        ```
        
        ## Contribute
        
        - Source Code: https://github.com/julianspaeth/icgc-survival
        
        ## Getting Started
        
        ```python
        >>> from download_helper import login, download_file_by_project
        >>> from feature_creator import extract_gene_affected_counts
        >>> from label_creator import extract_survival_labels
        
        >>> token = login(username, password)
        >>> df = download_file_by_project(token=token, filetype="simple_somatic_mutation", release=28, project_code="ALL-US")
        >>> ssm_gene_affected_counts = extract_gene_affected_counts(df)
        >>> labels, features = extract_survival_labels(ssm_gene_affected_counts, donors)
        
        >>> x, x_test, y, y_test = train_test_split(features, labels, shuffle=True, test_size=0.33, random_state=10)
        ...
        ```
        
        ## Support
        
        If you are having issues or feedback, please let me know.
        
        julian.spaeth@student.uni-tuebinden.de
        
        ## License
        MIT
Keywords: survival-analysis,survival-prediction,machine-learning,random-survival-forest,icgc
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Topic :: Software Development :: Build Tools
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Description-Content-Type: text/markdown
