Metadata-Version: 2.1
Name: mdocspoofer
Version: 0.0.8
Summary: spoof SerialEM mdoc files from images collected in Tomography v5 from ThermoFisher
Home-page: https://github.com/alisterburt/mdocspoofer
Author: Alister Burt
Author-email: alisterburt@gmail.com
License: BSD license
Project-URL: Source Code, https://github.com/alisterburt/mdocspoofer
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Requires-Python: >=3.7
Description-Content-Type: text/markdown
License-File: LICENSE.txt
Requires-Dist: click
Provides-Extra: dev
Requires-Dist: ipython ; extra == 'dev'
Requires-Dist: jedi (<0.18.0) ; extra == 'dev'
Requires-Dist: black ; extra == 'dev'
Requires-Dist: flake8 ; extra == 'dev'
Requires-Dist: flake8-docstrings ; extra == 'dev'
Requires-Dist: isort ; extra == 'dev'
Requires-Dist: mypy ; extra == 'dev'
Requires-Dist: pre-commit ; extra == 'dev'
Requires-Dist: pydocstyle ; extra == 'dev'
Requires-Dist: pytest ; extra == 'dev'
Requires-Dist: jupyter-book ; extra == 'dev'
Provides-Extra: testing
Requires-Dist: pytest ; extra == 'testing'

# mdocspoofer
Create dummy [SerialEM](https://bio3d.colorado.edu/SerialEM/) mdoc files for a set of tomograms collected as dose fractionated movies in Tomo5.

This serves to allow processing of cryo-ET data collected in Tomo5 using [Warp](http://www.warpem.com/warp/#).

## Installation
Python version 3.6+
```
pip install mdocspoofer
```

## Usage
From the command line run 
```
mdocspoofer
```

This will start an interactive command-line interface, provide the path to the folder containing 
the dose-fractionated micrographs and the applied electron dose per tilt image in electrons per square angstrom.

To run in non-interactive mode, supply options at the command line. Details can be found using
```
mdocspoofer --help
```
