LICENSE
MANIFEST.in
README.md
setup.py
ciftify/__init__.py
ciftify/config.py
ciftify/filenames.py
ciftify/html.py
ciftify/meants.py
ciftify/niio.py
ciftify/qc_config.py
ciftify/report.py
ciftify/utils.py
ciftify.egg-info/PKG-INFO
ciftify.egg-info/SOURCES.txt
ciftify.egg-info/dependency_links.txt
ciftify.egg-info/entry_points.txt
ciftify.egg-info/requires.txt
ciftify.egg-info/top_level.txt
ciftify/bidsapp/__init__.py
ciftify/bidsapp/run.py
ciftify/bin/__init__.py
ciftify/bin/cifti_vis_PINT
ciftify/bin/cifti_vis_PINT.py
ciftify/bin/cifti_vis_RSN
ciftify/bin/cifti_vis_fmri
ciftify/bin/cifti_vis_fmri.py
ciftify/bin/cifti_vis_map
ciftify/bin/cifti_vis_map.py
ciftify/bin/cifti_vis_recon_all
ciftify/bin/cifti_vis_recon_all.py
ciftify/bin/ciftify_PINT_vertices
ciftify/bin/ciftify_PINT_vertices.py
ciftify/bin/ciftify_atlas_report
ciftify/bin/ciftify_atlas_report.py
ciftify/bin/ciftify_clean_img
ciftify/bin/ciftify_clean_img.py
ciftify/bin/ciftify_falff
ciftify/bin/ciftify_falff.py
ciftify/bin/ciftify_groupmask
ciftify/bin/ciftify_groupmask.py
ciftify/bin/ciftify_meants
ciftify/bin/ciftify_meants.py
ciftify/bin/ciftify_peaktable
ciftify/bin/ciftify_peaktable.py
ciftify/bin/ciftify_postPINT1_concat
ciftify/bin/ciftify_postPINT1_concat.py
ciftify/bin/ciftify_postPINT2_sub2sub
ciftify/bin/ciftify_postPINT2_sub2sub.py
ciftify/bin/ciftify_recon_all
ciftify/bin/ciftify_recon_all.py
ciftify/bin/ciftify_seed_corr
ciftify/bin/ciftify_seed_corr.py
ciftify/bin/ciftify_statclust_report
ciftify/bin/ciftify_statclust_report.py
ciftify/bin/ciftify_subject_fmri
ciftify/bin/ciftify_subject_fmri.py
ciftify/bin/ciftify_surface_rois
ciftify/bin/ciftify_surface_rois.py
ciftify/bin/ciftify_vol_result
ciftify/bin/ciftify_vol_result.py
ciftify/bin/epi_hcpexport
ciftify/bin/extract_nuisance_regressors
ciftify/bin/extract_nuisance_regressors.py
ciftify/bin/filter_hcp.sh
ciftify/bin/logging.conf
ciftify/data/ciftify_workflow_settings.yaml
ciftify/data/qc_modes.yaml
ciftify/data/91282_Greyordinates/91282_Greyordinates.dscalar.nii
ciftify/data/91282_Greyordinates/Atlas_ROIs.2.nii.gz
ciftify/data/91282_Greyordinates/L.atlasroi.32k_fs_LR.shape.gii
ciftify/data/91282_Greyordinates/R.atlasroi.32k_fs_LR.shape.gii
ciftify/data/HCP_S1200_GroupAvg_v1/Q1-Q6_RelatedValidation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.32k_fs_LR.dlabel.nii
ciftify/data/HCP_S1200_GroupAvg_v1/RSN-networks.32k_fs_LR.dlabel.nii
ciftify/data/HCP_S1200_GroupAvg_v1/ReleaseNotes_HCP_S1200_GroupAvg_v1.txt
ciftify/data/HCP_S1200_GroupAvg_v1/S1200.L.inflated_MSMAll.32k_fs_LR.surf.gii
ciftify/data/HCP_S1200_GroupAvg_v1/S1200.L.midthickness_MSMAll.32k_fs_LR.surf.gii
ciftify/data/HCP_S1200_GroupAvg_v1/S1200.L.midthickness_MSMAll_va.32k_fs_LR.shape.gii
ciftify/data/HCP_S1200_GroupAvg_v1/S1200.L.pial_MSMAll.32k_fs_LR.surf.gii
ciftify/data/HCP_S1200_GroupAvg_v1/S1200.L.very_inflated_MSMAll.32k_fs_LR.surf.gii
ciftify/data/HCP_S1200_GroupAvg_v1/S1200.L.white_MSMAll.32k_fs_LR.surf.gii
ciftify/data/HCP_S1200_GroupAvg_v1/S1200.R.inflated_MSMAll.32k_fs_LR.surf.gii
ciftify/data/HCP_S1200_GroupAvg_v1/S1200.R.midthickness_MSMAll.32k_fs_LR.surf.gii
ciftify/data/HCP_S1200_GroupAvg_v1/S1200.R.midthickness_MSMAll_va.32k_fs_LR.shape.gii
ciftify/data/HCP_S1200_GroupAvg_v1/S1200.R.pial_MSMAll.32k_fs_LR.surf.gii
ciftify/data/HCP_S1200_GroupAvg_v1/S1200.R.very_inflated_MSMAll.32k_fs_LR.surf.gii
ciftify/data/HCP_S1200_GroupAvg_v1/S1200.R.white_MSMAll.32k_fs_LR.surf.gii
ciftify/data/HCP_S1200_GroupAvg_v1/S1200.sulc_MSMAll.32k_fs_LR.dscalar.nii
ciftify/data/HCP_S1200_GroupAvg_v1/cvs_avg35_inMNI152.aparc.32k_fs_LR.dlabel.nii
ciftify/data/PINT/Yeo7_2011_80verts.csv
ciftify/data/PINT/Yeo7_2011_80verts_roiidx_LUT.txt
ciftify/data/cleaning_configs/24MP_8Phys_4GSR.json
ciftify/data/cleaning_configs/24MP_8acompcor_4GSR.json
ciftify/data/hcp_config/FreeSurferAllLut.txt
ciftify/data/hcp_config/FreeSurferSubcorticalLabelTableLut.txt
ciftify/data/hcp_config/MSMSulcStrainFinalconf
ciftify/data/scene_templates/ciftify_fmri.scene
ciftify/data/scene_templates/mapvis.scene
ciftify/data/scene_templates/recon_all.scene
ciftify/data/standard_mesh_atlases/Atlas_ROIs.2.nii.gz
ciftify/data/standard_mesh_atlases/Avgwmparc.nii.gz
ciftify/data/standard_mesh_atlases/L.atlasroi.164k_fs_LR.shape.gii
ciftify/data/standard_mesh_atlases/L.atlasroi.32k_fs_LR.shape.gii
ciftify/data/standard_mesh_atlases/L.refsulc.164k_fs_LR.shape.gii
ciftify/data/standard_mesh_atlases/L.sphere.32k_fs_LR.surf.gii
ciftify/data/standard_mesh_atlases/R.atlasroi.164k_fs_LR.shape.gii
ciftify/data/standard_mesh_atlases/R.atlasroi.32k_fs_LR.shape.gii
ciftify/data/standard_mesh_atlases/R.refsulc.164k_fs_LR.shape.gii
ciftify/data/standard_mesh_atlases/R.sphere.32k_fs_LR.surf.gii
ciftify/data/standard_mesh_atlases/colin.cerebral.L.flat.164k_fs_LR.surf.gii
ciftify/data/standard_mesh_atlases/colin.cerebral.L.flat.32k_fs_LR.surf.gii
ciftify/data/standard_mesh_atlases/colin.cerebral.R.flat.164k_fs_LR.surf.gii
ciftify/data/standard_mesh_atlases/colin.cerebral.R.flat.32k_fs_LR.surf.gii
ciftify/data/standard_mesh_atlases/fsaverage.L_LR.spherical_std.164k_fs_LR.surf.gii
ciftify/data/standard_mesh_atlases/fsaverage.R_LR.spherical_std.164k_fs_LR.surf.gii
ciftify/data/standard_mesh_atlases/fs_L/fs_L-to-fs_LR_fsaverage.L_LR.spherical_std.164k_fs_L.surf.gii
ciftify/data/standard_mesh_atlases/fs_L/fsaverage.L.sphere.164k_fs_L.surf.gii
ciftify/data/standard_mesh_atlases/fs_R/fs_R-to-fs_LR_fsaverage.R_LR.spherical_std.164k_fs_R.surf.gii
ciftify/data/standard_mesh_atlases/fs_R/fsaverage.R.sphere.164k_fs_R.surf.gii