LICENSE
README.md
pyproject.toml
src/poolparty/__init__.py
src/poolparty/codon_table.py
src/poolparty/config.py
src/poolparty/dna_pool.py
src/poolparty/generate_library.py
src/poolparty/operation.py
src/poolparty/party.py
src/poolparty/pool.py
src/poolparty/protein_pool.py
src/poolparty/py.typed
src/poolparty/region.py
src/poolparty/types.py
src/poolparty.egg-info/PKG-INFO
src/poolparty.egg-info/SOURCES.txt
src/poolparty.egg-info/dependency_links.txt
src/poolparty.egg-info/requires.txt
src/poolparty.egg-info/top_level.txt
src/poolparty/base_ops/__init__.py
src/poolparty/base_ops/filter_seq.py
src/poolparty/base_ops/flip.py
src/poolparty/base_ops/from_iupac.py
src/poolparty/base_ops/from_motif.py
src/poolparty/base_ops/from_seqs.py
src/poolparty/base_ops/get_barcodes.py
src/poolparty/base_ops/get_kmers.py
src/poolparty/base_ops/materialize.py
src/poolparty/base_ops/mutagenize.py
src/poolparty/base_ops/recombine.py
src/poolparty/base_ops/shuffle_seq.py
src/poolparty/data/__init__.py
src/poolparty/data/restriction_enzymes.py
src/poolparty/fixed_ops/__init__.py
src/poolparty/fixed_ops/add_prefix.py
src/poolparty/fixed_ops/clear_annotation.py
src/poolparty/fixed_ops/clear_gaps.py
src/poolparty/fixed_ops/fixed.py
src/poolparty/fixed_ops/from_fasta.py
src/poolparty/fixed_ops/from_seq.py
src/poolparty/fixed_ops/join.py
src/poolparty/fixed_ops/lower.py
src/poolparty/fixed_ops/passthrough.py
src/poolparty/fixed_ops/rc.py
src/poolparty/fixed_ops/score.py
src/poolparty/fixed_ops/slice_seq.py
src/poolparty/fixed_ops/stylize.py
src/poolparty/fixed_ops/swapcase.py
src/poolparty/fixed_ops/upper.py
src/poolparty/multiscan_ops/__init__.py
src/poolparty/multiscan_ops/deletion_multiscan.py
src/poolparty/multiscan_ops/insertion_multiscan.py
src/poolparty/orf_ops/__init__.py
src/poolparty/orf_ops/annotate_orf.py
src/poolparty/orf_ops/mutagenize_orf.py
src/poolparty/orf_ops/reverse_translate.py
src/poolparty/orf_ops/stylize_orf.py
src/poolparty/orf_ops/translate.py
src/poolparty/pool_mixins/__init__.py
src/poolparty/pool_mixins/common_ops_mixin.py
src/poolparty/pool_mixins/dna_mixin.py
src/poolparty/pool_mixins/export_mixin.py
src/poolparty/pool_mixins/filter_mixin.py
src/poolparty/pool_mixins/generic_fixed_ops_mixin.py
src/poolparty/pool_mixins/protein_mixin.py
src/poolparty/pool_mixins/region_ops_mixin.py
src/poolparty/pool_mixins/scan_ops_mixin.py
src/poolparty/pool_mixins/state_ops_mixin.py
src/poolparty/region_ops/__init__.py
src/poolparty/region_ops/annotate_region.py
src/poolparty/region_ops/apply_at_region.py
src/poolparty/region_ops/extract_region.py
src/poolparty/region_ops/insert_tags.py
src/poolparty/region_ops/region_multiscan.py
src/poolparty/region_ops/region_scan.py
src/poolparty/region_ops/remove_tags.py
src/poolparty/region_ops/replace_region.py
src/poolparty/scan_ops/__init__.py
src/poolparty/scan_ops/deletion_scan.py
src/poolparty/scan_ops/insertion_scan.py
src/poolparty/scan_ops/mutagenize_scan.py
src/poolparty/scan_ops/shuffle_scan.py
src/poolparty/scan_ops/subseq_scan.py
src/poolparty/state_ops/__init__.py
src/poolparty/state_ops/repeat.py
src/poolparty/state_ops/sample.py
src/poolparty/state_ops/stack.py
src/poolparty/state_ops/state_shuffle.py
src/poolparty/state_ops/state_slice.py
src/poolparty/state_ops/sync.py
src/poolparty/text_viz/__init__.py
src/poolparty/text_viz/graph.py
src/poolparty/text_viz/pool_op_tree.py
src/poolparty/text_viz/state_tree.py
src/poolparty/text_viz/tree.py
src/poolparty/utils/__init__.py
src/poolparty/utils/df_utils.py
src/poolparty/utils/dna_seq.py
src/poolparty/utils/dna_utils.py
src/poolparty/utils/orf_utils.py
src/poolparty/utils/parsing_utils.py
src/poolparty/utils/protein_seq.py
src/poolparty/utils/region_context.py
src/poolparty/utils/scan_utils.py
src/poolparty/utils/seq.py
src/poolparty/utils/seq_properties.py
src/poolparty/utils/seq_utils.py
src/poolparty/utils/shuffle_utils.py
src/poolparty/utils/style_utils.py
src/poolparty/utils/utils.py
tests/test_add_prefix.py
tests/test_annotate.py
tests/test_audit_export_mixin.py
tests/test_audit_fixed_ops_alpha.py
tests/test_audit_fixed_ops_bravo.py
tests/test_audit_infra_alpha.py
tests/test_audit_infra_bravo.py
tests/test_audit_orf_ops_alpha.py
tests/test_audit_orf_ops_bravo.py
tests/test_audit_region_ops_alpha.py
tests/test_audit_region_ops_bravo.py
tests/test_audit_scan_multiscan_ops_alpha.py
tests/test_audit_scan_multiscan_ops_bravo.py
tests/test_audit_source_mutation.py
tests/test_audit_source_mutation_gaps.py
tests/test_audit_source_mutation_targeted.py
tests/test_audit_state_ops_alpha.py
tests/test_audit_state_ops_bravo.py
tests/test_config.py
tests/test_core_output_alpha.py
tests/test_core_output_bravo.py
tests/test_deletion_multiscan.py
tests/test_deletion_scan.py
tests/test_df_format.py
tests/test_dinuc_shuffle.py
tests/test_dna.py
tests/test_export.py
tests/test_filter.py
tests/test_filter_methods.py
tests/test_flip.py
tests/test_from_fasta.py
tests/test_from_iupac.py
tests/test_from_motif.py
tests/test_from_seq.py
tests/test_from_seqs.py
tests/test_get_barcodes.py
tests/test_get_kmers.py
tests/test_inline_styles.py
tests/test_insertion_scan.py
tests/test_integration_libraries.py
tests/test_join.py
tests/test_logging.py
tests/test_materialize.py
tests/test_mutagenize.py
tests/test_mutagenize_orf.py
tests/test_mutagenize_scan.py
tests/test_name_tracking.py
tests/test_num_states_override.py
tests/test_operation.py
tests/test_party.py
tests/test_pool.py
tests/test_random_num_states.py
tests/test_recombine.py
tests/test_region_context.py
tests/test_region_multiscan.py
tests/test_regions.py
tests/test_replacement_multiscan.py
tests/test_replacement_scan.py
tests/test_reverse_translate.py
tests/test_sample.py
tests/test_score.py
tests/test_seq.py
tests/test_seq_names.py
tests/test_seq_properties.py
tests/test_seq_shuffle.py
tests/test_shuffle_scan.py
tests/test_slice_seq.py
tests/test_state_shuffle.py
tests/test_state_slice.py
tests/test_style.py
tests/test_stylize_orf.py
tests/test_subseq_scan.py
tests/test_swapcase.py
tests/test_translate.py
tests/test_types.py