.gitignore
MANIFEST.in
README.md
example.ipynb
example.py
example_striatum.ipynb
gettingStarted.mlx
pyproject.toml
requirements.txt
+bsv/analyzeCPSubregions.m
+bsv/combined_image.mat
+bsv/example.m
+bsv/example_striatum.m
+bsv/fetchConnectivityData.m
+bsv/fetchConnectivityImages.m
+bsv/fetchConnectivitySummary.m
+bsv/findConnectivityExperiments.m
+bsv/plotConnectivity.m
+bsv/plotConnectivity3D.m
+bsv/plotConnectivityMultiRegion.m
+bsv/plotConnectivityWithSubregionAnalysis.m
+bsv/plotInjectionsCombined.m
+bsv/plotMultiRegionInjections.m
+bsv/thresholdConnectivity.m
+bsv/bggRegions/full_ara81.mat
+bsv/bggRegions/full_ara83.mat
+bsv/bggRegions/full_ara87.mat
+bsv/bggRegions/full_ara89.mat
+bsv/bggRegions/full_ara91.mat
+bsv/bggRegions/getKim_Dong_labels.m
+bsv/bggRegions/gpe.png
+bsv/bggRegions/snr.png
+bsv/bggRegions/visual/cp.mat
+bsv/bggRegions/visual/cp_aca.mat
+bsv/bggRegions/visual/cp_ara.mat
+bsv/bggRegions/visual/cp_ara_aca.mat
+bsv/bggRegions/visual/current_figure.fig
+bsv/bggRegions/visual/gpe.mat
+bsv/bggRegions/visual/gpe_aca.mat
+bsv/bggRegions/visual/gpe_ara.mat
+bsv/bggRegions/visual/gpe_ara_aca.mat
+bsv/bggRegions/visual/gpe_ara_thresh1.mat
+bsv/bggRegions/visual/gpe_thresh1.mat
+bsv/bggRegions/visual/snr.mat
+bsv/bggRegions/visual/snr_aca.mat
+bsv/bggRegions/visual/snr_ara.mat
+bsv/bggRegions/visual/snr_ara_aca.mat
+bsv/bggRegions/visual/snr_ara_thresh1.mat
+bsv/bggRegions/visual/snr_thresh1.mat
brain_street_view.egg-info/PKG-INFO
brain_street_view.egg-info/SOURCES.txt
brain_street_view.egg-info/dependency_links.txt
brain_street_view.egg-info/requires.txt
brain_street_view.egg-info/top_level.txt
bsv/__init__.py
bsv/analyze_cp_subregions.py
bsv/atlas_utils.py
bsv/fetch_connectivity_data.py
bsv/fetch_connectivity_images.py
bsv/fetch_connectivity_summary.py
bsv/find_connectivity_experiments.py
bsv/plot_connectivity.py
bsv/plot_connectivity_3d.py
bsv/plot_connectivity_multi_region.py
bsv/plot_connectivity_with_subregion_analysis.py
bsv/plot_injections_combined.py
bsv/plot_multi_region_injections.py
bsv/threshold_connectivity.py
bsv/__pycache__/__init__.cpython-312.pyc
bsv/__pycache__/analyze_cp_subregions.cpython-312.pyc
bsv/__pycache__/atlas_utils.cpython-312.pyc
bsv/__pycache__/fetch_connectivity_data.cpython-312.pyc
bsv/__pycache__/fetch_connectivity_images.cpython-312.pyc
bsv/__pycache__/fetch_connectivity_summary.cpython-312.pyc
bsv/__pycache__/find_connectivity_experiments.cpython-312.pyc
bsv/__pycache__/plot_connectivity.cpython-312.pyc
bsv/__pycache__/plot_connectivity_3d.cpython-312.pyc
bsv/__pycache__/plot_connectivity_multi_region.cpython-312.pyc
bsv/__pycache__/plot_connectivity_with_subregion_analysis.cpython-312.pyc
bsv/__pycache__/plot_injections_combined.cpython-312.pyc
bsv/__pycache__/plot_multi_region_injections.cpython-312.pyc
bsv/__pycache__/threshold_connectivity.cpython-312.pyc
docs/Accessing_October_2014_projection_data .pdf
docs/allenAtlasProjection_info.csv
docs/atlas_reference_space.png
docs/structure_ionizes.png
images/bsv.png
images/bsv.svg
images/bsv_red.svg
images/doc_list.md
images/ex_VIS_to_CP.png
images/ex_VISal.png
images/ex_VISp.png
images/visualInjections.avi
images/visualInjections.gif
tests/conftest.py
tests/test_analyze_subregions.py
tests/test_atlas_utils.py
tests/test_fetch_data.py
tests/test_find_experiments.py
tests/test_plot_connectivity.py
tests/__pycache__/conftest.cpython-312-pytest-7.4.4.pyc
tests/__pycache__/test_analyze_subregions.cpython-312-pytest-7.4.4.pyc
tests/__pycache__/test_atlas_utils.cpython-312-pytest-7.4.4.pyc
tests/__pycache__/test_fetch_data.cpython-312-pytest-7.4.4.pyc
tests/__pycache__/test_find_experiments.cpython-312-pytest-7.4.4.pyc
tests/__pycache__/test_plot_connectivity.cpython-312-pytest-7.4.4.pyc