README.md
pyproject.toml
lpce/__init__.py
lpce/run_full_pipeline.py
lpce.egg-info/PKG-INFO
lpce.egg-info/SOURCES.txt
lpce.egg-info/dependency_links.txt
lpce.egg-info/requires.txt
lpce.egg-info/top_level.txt
lpce/cleanup/__init__.py
lpce/cleanup/filter_ligands.py
lpce/cleanup/remove_dna_rna.py
lpce/cleanup/remove_empty_structures.py
lpce/cleanup/remove_junk_ligands.py
lpce/cleanup/remove_multiple_models.py
lpce/cleanup/remove_water.py
lpce/extraction/__init__.py
lpce/extraction/convert_pdb_to_smiles_sdf.py
lpce/extraction/decompress_files.py
lpce/extraction/extract_complexes.py
lpce/extraction/parse_dict.py
lpce/pdb_manipulations/__init__.py
lpce/pdb_manipulations/add_h_to_ligands.py
lpce/pdb_manipulations/clash_ligands.py
lpce/pdb_manipulations/foldseek.py
lpce/pdb_manipulations/protein_ligand_separator.py
lpce/pdb_manipulations/remove_not_buried_ligands.py
lpce/pdb_manipulations/remove_similar_structures.py
lpce/pdb_manipulations/split2file.py
lpce/pdb_manipulations/split_bioml.py
lpce/tests/__init__.py
lpce/tests/conftest.py
lpce/tests/test_pipeline.py
lpce/utils/__init__.py
lpce/utils/calc_descriptors.py
lpce/utils/clean_names.py
lpce/utils/sdf2df.py
lpce/utils/send_email.py
lpce/utils/smi2df.py
lpce/utils/utils.py