Metadata-Version: 2.1
Name: hgnc-queries
Version: 0.0.3
Summary: Make HGNC queries for gene symbols
Home-page: https://github.com/NHS-NGS/hgnc_queries
Author: Yujin Kim
Author-email: yujin.kim@hotmail.fr
License: UNKNOWN
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.5
Description-Content-Type: text/markdown

# hgnc_queries.py 

Query HGNC for gene symbols.  
Created to attempt to rescue old gene symbols because of an old excel "database" that had to be converted in a Django database

## Installation

```
pip install hgnc-queries
```

## Examples:

Use HGNC queries to get:
```
>> import hgnc_queries
>> hgnc_queries.get_new_symbol("RN5S49", verbose = False)
RNA5SP49

>> hgnc_queries.get_gene_starting_with("BRCA", verbose = False)
["BRCA1", "BRCA1P1", "BRCA2", "BRCA3"]

>> hgnc_queries.get_alias("ARID1B", verbose = False)
["KIAA1235", "ELD/OSA1", "p250R", "BAF250b", "DAN15", "6A3-5"]

>> hgnc_queries.get_main_symbol(BRAF1, verbose = False)
BRAF

>> hgnc_queries.get_prev_symbol("COL2A1", verbose = False)
["SEDC", "AOM"]

>> hgnc_queries.get_id("BRAF", verbose = False)
HGNC:1097

>>hgnc_queries.get_symbol_from_id("1097", verbose = False)
BRAF

# new function more for in-script use
# get the hgnc symbol if gene symbol not recognized by the process you're using
>>print(queries.get_hgnc_symbol("RN5S49"))
RNA5SP49
>>print(queries.get_hgnc_symbol("BRAF1"))
BRAF
```

