Metadata-Version: 2.4
Name: genome_info
Version: 1.1.4
Summary: Python package genome annotations
Author-email: "Kyle S. Smith" <kyle.smith@stjude.org>
Maintainer-email: "Kyle S. Smith" <kyle.smith@stjude.org>
License-Expression: GPL-2.0-or-later
Project-URL: Homepage, https://github.com/kylessmith/genome_info
Project-URL: Repository, https://github.com/kylessmith/genome_info
Project-URL: Documentation, https://www.biosciencestack.com/static/genome_info/docs/index.html
Project-URL: Issues, https://github.com/kylessmith/genome_info/issues
Keywords: cython,annotation,genome
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Operating System :: POSIX :: Linux
Classifier: Operating System :: MacOS
Classifier: Operating System :: Microsoft :: Windows
Classifier: Programming Language :: Cython
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.13
Classifier: Programming Language :: Python :: 3.14
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Mathematics
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Software Development :: Libraries
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE.md
Requires-Dist: numpy>=2.0.0
Requires-Dist: pandas>=2.0.0
Requires-Dist: ailist<3,>=2.2.1
Requires-Dist: intervalframe>=1.2.3
Requires-Dist: tqdm<5,>=4.65.0
Requires-Dist: multiverse_cache<1,>=0.2.1
Provides-Extra: dev
Requires-Dist: pytest>=7.0; extra == "dev"
Requires-Dist: cython-lint; extra == "dev"
Dynamic: license-file

# genome_info_

[![Build Status](https://travis-ci.org/kylessmith/genome_info.svg?branch=master)](https://travis-ci.org/kylessmith/genome_info) [![PyPI version](https://badge.fury.io/py/genome_info.svg)](https://badge.fury.io/py/genome_info)
[![Coffee](https://img.shields.io/badge/-buy_me_a%C2%A0coffee-gray?logo=buy-me-a-coffee&color=ff69b4)](https://www.buymeacoffee.com/kylessmith)

A package to work with genomic intervals.


## Install

If you dont already have numpy and scipy installed, it is best to download
`Anaconda`, a python distribution that has them included.  
```
    https://continuum.io/downloads
```

Dependencies can be installed by:

```
    pip install -r requirements.txt
```

PyPI install, presuming you have all its requirements installed:
```
    pip install genome_info(not yet!!)
```

## Usage

```python
import genome_info_
genome = genome_info.GenomeInfo("hg38")
genome.chrom_sizes

genome.n_bases

genome.tss()

genome.tss(upstream=1000, downstream=1000)

```

