CODE_OF_CONDUCT.md
LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
versioneer.py
frustratometer/README.md
frustratometer/__init__.py
frustratometer/_version.py
frustratometer.egg-info/PKG-INFO
frustratometer.egg-info/SOURCES.txt
frustratometer.egg-info/dependency_links.txt
frustratometer.egg-info/requires.txt
frustratometer.egg-info/top_level.txt
frustratometer/align/__init__.py
frustratometer/align/align.py
frustratometer/classes/AWSEM.py
frustratometer/classes/DCA.py
frustratometer/classes/Frustratometer.py
frustratometer/classes/Gamma.py
frustratometer/classes/Map.py
frustratometer/classes/Structure.py
frustratometer/classes/__init__.py
frustratometer/data/AWSEM_2015.json
frustratometer/data/AWSEM_ddG_trained.json
frustratometer/data/AWSEM_membrane_2015.json
frustratometer/data/README.md
frustratometer/data/burial_gamma
frustratometer/data/gamma_ijm
frustratometer/data/pdb_chain_pfam.csv
frustratometer/data/protein_gamma_ijm
frustratometer/data/water_gamma_ijm
frustratometer/dca/__init__.py
frustratometer/dca/matlab.py
frustratometer/dca/pydca.py
frustratometer/filter/__init__.py
frustratometer/filter/filter.py
frustratometer/frustration/__init__.py
frustratometer/frustration/frustration.py
frustratometer/map/__init__.py
frustratometer/map/map.py
frustratometer/optimization/EnergyTerm.py
frustratometer/optimization/__init__.py
frustratometer/optimization/inner_product.py
frustratometer/optimization/optimization.py
frustratometer/pdb/__init__.py
frustratometer/pdb/fix.py
frustratometer/pdb/pdb.py
frustratometer/pfam/__init__.py
frustratometer/pfam/pfam.py
frustratometer/plmDCA_asymmetric_v2_with_h/mexAll.m
frustratometer/plmDCA_asymmetric_v2_with_h/plmDCA_asymmetric.m
frustratometer/plmDCA_asymmetric_v2_with_h/readme.txt
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc_copyright.txt
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/ArmijoBacktrack.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/WolfeLineSearch.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/callOutput.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/conjGrad.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/dampedUpdate.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/example_minFunc.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/example_minFunc_LR.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/isLegal.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgs.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgsAdd.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgsAddC.c
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgsAddC.mexa64
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgsAddC.mexmaci64
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgsAddC.mexw64
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgsC.c
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgsC.mexa64
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgsC.mexglx
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgsC.mexmac
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgsC.mexmaci
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgsC.mexmaci64
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgsC.mexw32
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgsC.mexw64
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgsHvFunc2.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgsProd.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgsProdC.c
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgsProdC.mexa64
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgsProdC.mexmaci64
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgsProdC.mexw64
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/lbfgsUpdate.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/mchol.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/mcholC.c
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/mcholC.mexa64
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/mcholC.mexglx
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/mcholC.mexmac
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/mcholC.mexmaci64
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/mcholC.mexw32
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/mcholC.mexw64
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/mcholinc.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/minFunc.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/minFunc_examples.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/minFunc_processInputOptions.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/polyinterp.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/precondDiag.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/precondTriu.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/precondTriuDiag.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/taylorModel.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/autoDiff/autoGrad.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/autoDiff/autoHess.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/autoDiff/autoHv.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/autoDiff/autoTensor.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/autoDiff/derivativeCheck.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/autoDiff/example_derivativeCheck.m
frustratometer/plmDCA_asymmetric_v2_with_h/3rd_party_code/minFunc/autoDiff/fastDerivativeCheck.m
frustratometer/plmDCA_asymmetric_v2_with_h/functions/calc_inverse_weights.c
frustratometer/plmDCA_asymmetric_v2_with_h/functions/calc_inverse_weights.mexa64
frustratometer/plmDCA_asymmetric_v2_with_h/functions/g_rC.c
frustratometer/plmDCA_asymmetric_v2_with_h/functions/g_rC.mexa64
frustratometer/plmDCA_asymmetric_v2_with_h/test_examples/example1_alignment.txt
frustratometer/plmDCA_asymmetric_v2_with_h/test_examples/example1_scores.txt
frustratometer/plmDCA_asymmetric_v2_with_h/test_examples/example2_alignment.txt
frustratometer/plmDCA_asymmetric_v2_with_h/test_examples/example2_scores.txt
frustratometer/plmDCA_asymmetric_v2_with_h/test_examples/information.txt
frustratometer/utils/__init__.py
frustratometer/utils/app_path.py
frustratometer/utils/format_time.py
frustratometer/utils/utils.py
tests/__init__.py
tests/conftest.py
tests/test_awsem_frustratometer.py
tests/test_dca_frustratometer.py
tests/test_energy_term.py
tests/test_format_time.py
tests/test_gamma.py
tests/test_imports.py
tests/test_map.py
tests/test_optimization.py