Metadata-Version: 2.1
Name: korbinian
Version: 0.3.2
Summary: Bioinformatic sequence analysis of membrane proteins.
Home-page: https://github.com/teese/korbinian
Author: Mark Teese
Author-email: mark.teese@checkmytumhomepage.de
License: MIT
Download-URL: https://github.com/teese/korbinian/archive/0.3.2.tar.gz
Project-URL: Wiki, https://github.com/teese/korbinian/wiki
Project-URL: LangoschLab, http://cbp.wzw.tum.de/index.php?id=9
Project-URL: TU_Muenchen, https://www.tum.de
Keywords: bioinformatics protein sequence membrane conservation evolution membranous soluble polypeptide BLAST SIMAP
Platform: UNKNOWN
Description-Content-Type: text/x-rst
Requires-Dist: numpy
Requires-Dist: matplotlib
Requires-Dist: pandas
Requires-Dist: seaborn
Requires-Dist: scipy
Requires-Dist: biopython

korbinian
=========

Bioinformatic sequence analysis of membrane proteins.

What is this repository for?
----------------------------

* Parsing of UniProt flatfiles
* Downloading homologues (primarily with SIMAP)
* Parsing BLAST-like XML files
* Analysis of protein sequences
* Automated figure creation

License
-------

* korbinian is released under the permissive MIT licence

Credits
-------

* Mark Teese
* Martin Ortner
* Shenger Wang
* Rimma Jenske
* Enzo Torasso
* Dominik Mueller

Citation
--------

* scientific publication to be added
* currently cited as "the korbinian python package (Mark Teese, Technical University of Munich)"

Contact
-------
For contact details, see the image below. 


Further contact details are available at my `staff page`__ within the `Langosch lab`__
of the Technical University of Munich.

.. _StaffPage: http://cbp.wzw.tum.de/index.php?id=49&L=1
.. _LangoschPage: http://cbp.wzw.tum.de/index.php?id=9

__ StaffPage_
__ LangoschPage_


.. image:: https://raw.githubusercontent.com/teese/eccpy/master/docs/images/signac_seine_bei_samois.png
   :height: 150px
   :width: 250px

Example Summary Files
---------------------

.. image:: https://raw.githubusercontent.com/teese/korbinian/master/korbinian/examples/images/density.png
   :height: 600 px
   :width: 600 px

Compare three different membrane protein families:
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

.. image:: https://raw.githubusercontent.com/teese/korbinian/master/korbinian/examples/images/n_homol.png
   :height: 500 px
   :width: 700 px

.. image:: https://raw.githubusercontent.com/teese/korbinian/master/korbinian/examples/images/aa_propens.png
   :height: 500 px
   :width: 700 px

.. image:: https://raw.githubusercontent.com/teese/korbinian/master/korbinian/examples/images/len.png
   :height: 500 px
   :width: 700 px

.. image:: https://raw.githubusercontent.com/teese/korbinian/master/korbinian/examples/images/percent_TM.png
   :height: 500 px
   :width: 700 px

