Metadata-Version: 2.5
Name: Sequential_Fish
Version: 1.2.2
Summary: Open source package deploying a complete quantification pipeline for analysis of sequential smFish images. Raw data can then be analysed by custom means or with out of the bow analysis pipelined provided.
Project-URL: Homepage, https://github.com/SlimaniF/Sequential_Fish
Project-URL: Wiki, https://github.com/SlimaniF/Sequential_Fish/wiki
Project-URL: Issues, https://github.com/SlimaniF/Sequential_Fish/issues
Author-email: Slimani Floric <floric.slimani@live.fr>
License-File: LICENCE
Classifier: License :: OSI Approved :: BSD License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.12
Requires-Dist: af-eraser>=0.1.0
Requires-Dist: big-fish-reloaded>=0.6.3
Requires-Dist: czifile==2026.8.16
Requires-Dist: igraph>=1.0.0
Requires-Dist: leidenalg>=0.12.0
Requires-Dist: lxml>=6.1.3
Requires-Dist: magicgui>=0.10.2
Requires-Dist: matplotlib>=3.11.2
Requires-Dist: napari[pyside]>=0.9.1
Requires-Dist: numpy>=2.5.3
Requires-Dist: ome-types
Requires-Dist: openpyxl>=3.1.5
Requires-Dist: pandas>=3.0.5
Requires-Dist: pebble
Requires-Dist: prince>=0.20.2
Requires-Dist: scikit-image>=0.26.0
Requires-Dist: scikit-learn>=1.9.1
Requires-Dist: scipy>=1.18.1
Requires-Dist: smfishtools>=0.2.2
Requires-Dist: tqdm>=4.70.1
Description-Content-Type: text/markdown

Quantification and analysis pipeline for Sequential Fish data.
DOI : https://zenodo.org/account/settings/github/repository/2Echoes/Sequential_Fish

# TODO :  
* **Viewer** : Update Viewer call to main with new_run_path selection.  
* **analysis** : Implement RNA (target) filtering in analysis.main
* **pipeline** : dapi alignement
* **pipeline** : background removal
