LICENSE.txt
Logo.png
LogoTensor.png
README.md
mkdocs.yml
setup.py
benchmarks/__init__.py
benchmarks/benchmarks.py
cell2cell/__init__.py
cell2cell.egg-info/PKG-INFO
cell2cell.egg-info/SOURCES.txt
cell2cell.egg-info/dependency_links.txt
cell2cell.egg-info/not-zip-safe
cell2cell.egg-info/requires.txt
cell2cell.egg-info/top_level.txt
cell2cell/analysis/__init__.py
cell2cell/analysis/pipelines.py
cell2cell/analysis/tensor_downstream.py
cell2cell/clustering/__init__.py
cell2cell/clustering/cluster_interactions.py
cell2cell/core/__init__.py
cell2cell/core/cci_scores.py
cell2cell/core/cell.py
cell2cell/core/communication_scores.py
cell2cell/core/interaction_space.py
cell2cell/datasets/__init__.py
cell2cell/datasets/heuristic_data.py
cell2cell/datasets/random_data.py
cell2cell/datasets/toy_data.py
cell2cell/external/__init__.py
cell2cell/external/goenrich.py
cell2cell/external/pcoa.py
cell2cell/external/pcoa_utils.py
cell2cell/external/tensorly_nn_cp.py
cell2cell/external/umap.py
cell2cell/io/__init__.py
cell2cell/io/read_data.py
cell2cell/io/save_data.py
cell2cell/plotting/__init__.py
cell2cell/plotting/aesthetics.py
cell2cell/plotting/ccc_plot.py
cell2cell/plotting/cci_plot.py
cell2cell/plotting/circular_plot.py
cell2cell/plotting/factor_plot.py
cell2cell/plotting/pcoa_plot.py
cell2cell/plotting/pval_plot.py
cell2cell/plotting/tensor_plot.py
cell2cell/plotting/umap_plot.py
cell2cell/preprocessing/__init__.py
cell2cell/preprocessing/cutoffs.py
cell2cell/preprocessing/find_elements.py
cell2cell/preprocessing/gene_ontology.py
cell2cell/preprocessing/integrate_data.py
cell2cell/preprocessing/manipulate_dataframes.py
cell2cell/preprocessing/ppi.py
cell2cell/preprocessing/rnaseq.py
cell2cell/preprocessing/signal.py
cell2cell/stats/__init__.py
cell2cell/stats/enrichment.py
cell2cell/stats/gini.py
cell2cell/stats/multitest.py
cell2cell/stats/permutation.py
cell2cell/tensor/__init__.py
cell2cell/tensor/external_scores.py
cell2cell/tensor/factor_manipulation.py
cell2cell/tensor/factorization.py
cell2cell/tensor/metrics.py
cell2cell/tensor/subset.py
cell2cell/tensor/tensor.py
cell2cell/tensor/tensor_manipulation.py
cell2cell/utils/__init__.py
cell2cell/utils/networks.py
cell2cell/utils/parallel_computing.py
docs/documentation.md
docs/index.md
docs/tutorials/ASD/01-Tensor-Factorization-ASD.ipynb
docs/tutorials/ASD/02-Factor-Specific-ASD.ipynb
docs/tutorials/ASD/03-GSEA-ASD.ipynb
docs/tutorials/ASD/KEGG.gmt
docs/tutorials/ASD/figures/4d-tensor.png
docs/tutorials/ASD/figures/tensor-approx.png
docs/tutorials/ASD/figures/tensor-factorization.png
docs/tutorials/ASD/figures/tf.png
docs/tutorials/ASD/results/Loadings.xlsx
examples/cell2cell/Human-2020-Jin-LR-pairs.csv
examples/cell2cell/Toy-Example-BulkPipeline.ipynb
examples/cell2cell/Toy-Example-SingleCellPipeline.ipynb
examples/cell2cell/Toy-Example.ipynb
examples/tensor_cell2cell/GPU-Example.ipynb
examples/tensor_cell2cell/Loading-PreBuiltTensor.ipynb
examples/tensor_cell2cell/PreBuiltMetadata-PBMC.pkl
examples/tensor_cell2cell/PreBuiltTensor-PBMC.pkl
examples/tensor_cell2cell/Tensor-cell2cell-PBMC.ipynb
release/0.5.10-notes.md
release/0.5.11-notes.md
release/0.5.4-notes.md
release/0.5.5-notes.md
release/0.5.6-notes.md
release/0.5.7-notes.md
release/0.5.8-notes.md
release/0.5.9-notes.md
release/0.6.0-notes.md
release/0.6.1-notes.md
release/0.6.2-notes.md