Metadata-Version: 1.2
Name: colicoords
Version: 0.1.4
Summary: Create a coordinate system in rod-shaped cells.
Home-page: https://github.com/Jhsmit/ColiCoords
Author: Jochem Smit
Author-email: jhmit@gmail.com
License: MIT
Description: |travis| |appveyor| |docs| |binder| |codecov| |license| |doi| 
        
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            :target: https://travis-ci.org/Jhsmit/ColiCoords 
        .. |appveyor| image:: https://ci.appveyor.com/api/projects/status/801teey9fnm8kuc9/branch/master?svg=true
            :target: https://ci.appveyor.com/project/Jhsmit/colicoords
        .. |docs| image:: https://readthedocs.org/projects/colicoords/badge/?version=latest
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            :alt: Documentation Status
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            :target: https://mybinder.org/v2/gh/Jhsmit/ColiCoords/master
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          :target: https://codecov.io/gh/Jhsmit/ColiCoords
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            :target: https://opensource.org/licenses/MIT
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           :target: https://zenodo.org/badge/latestdoi/92830488
        
        `Documentation <https://colicoords.readthedocs.io/>`_
        
        `PLOS One Paper <https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0217524>`_ 
        
        `BioRxiv Paper <https://www.biorxiv.org/content/10.1101/608109v1>`_
        
        Project Goals
        =============
        
        ColiCoords is a python project for analysis of fluorescence microscopy data from rodlike cells. The project is aimed to be an open, well documented platform where users can easily share data through compact hdf5 files and analysis pipelines in the form of Jupyter notebooks.
        
        
        Installation
        ============
        
        ``ColiCoords`` is available on PyPi and Conda Forge. Currently, python >= 3.6 is required.
        
        Installation by `Conda <https://conda.io/docs/>`_.:
        
        .. code:: bash
             
             conda install -c conda-forge colicoords 
        
        For installation via PyPi a C++ compiler is required for installing the dependency `mahotas  <https://mahotas.readthedocs.io/en/latest/index.html>`_. Alternatively, ``mahotas`` can be installed separately from Conda. 
        
        To install ``ColiCoords`` from pypi:
        
        .. code:: bash
        
            pip install colicoords
        
        
        Although `ColiCoords` features automated testing, there are likely to be bugs. Users are encouraged to report them via the Issues page on GitHub. 
        
        Contact: jhsmit@gmail.com
        
        Examples
        ========
        
        Several examples of `ColiCoords` usage can be found in the examples directory.
        
        
        |pipeline|
        
        .. |pipeline| image:: images/pipeline_figure.png
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Keywords: cells microscopy ecoli coordinates
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Framework :: Jupyter
Classifier: License :: OSI Approved :: MIT License
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Programming Language :: Python :: 3.6
Requires-Python: >=3.6
