LICENSE.txt
MANIFEST.in
README.md
setup.cfg
setup.py
peitho/__init__.py
peitho.egg-info/PKG-INFO
peitho.egg-info/SOURCES.txt
peitho.egg-info/dependency_links.txt
peitho.egg-info/entry_points.txt
peitho.egg-info/not-zip-safe
peitho.egg-info/requires.txt
peitho.egg-info/top_level.txt
peitho/errors_and_parsers/__init__.py
peitho/errors_and_parsers/abc_sysbio/__init__.py
peitho/errors_and_parsers/abc_sysbio/abcsysbio/__init__.py
peitho/errors_and_parsers/abc_sysbio/abcsysbio/checkInputArguments.py
peitho/errors_and_parsers/abc_sysbio/abcsysbio/generateTemplate.py
peitho/errors_and_parsers/abc_sysbio/abcsysbio/relations.py
peitho/errors_and_parsers/abc_sysbio/abcsysbio_parser/CUDAParser.py
peitho/errors_and_parsers/abc_sysbio/abcsysbio_parser/CWriter.py
peitho/errors_and_parsers/abc_sysbio/abcsysbio_parser/CandPythonParser.py
peitho/errors_and_parsers/abc_sysbio/abcsysbio_parser/GillespieCUDAWriter.py
peitho/errors_and_parsers/abc_sysbio/abcsysbio_parser/GillespiePythonWriter.py
peitho/errors_and_parsers/abc_sysbio/abcsysbio_parser/ODECUDAParser.py
peitho/errors_and_parsers/abc_sysbio/abcsysbio_parser/ODECUDAWriter.py
peitho/errors_and_parsers/abc_sysbio/abcsysbio_parser/ODEPythonWriter.py
peitho/errors_and_parsers/abc_sysbio/abcsysbio_parser/ParseAndWrite.py
peitho/errors_and_parsers/abc_sysbio/abcsysbio_parser/ParsedModel.py
peitho/errors_and_parsers/abc_sysbio/abcsysbio_parser/Parser.py
peitho/errors_and_parsers/abc_sysbio/abcsysbio_parser/SDEAndGillespieCUDAParser.py
peitho/errors_and_parsers/abc_sysbio/abcsysbio_parser/SDECUDAWriter.py
peitho/errors_and_parsers/abc_sysbio/abcsysbio_parser/SDEPythonWriter.py
peitho/errors_and_parsers/abc_sysbio/abcsysbio_parser/Writer.py
peitho/errors_and_parsers/abc_sysbio/abcsysbio_parser/__init__.py
peitho/errors_and_parsers/error_checks/SBML_check.py
peitho/errors_and_parsers/error_checks/__init__.py
peitho/errors_and_parsers/error_checks/error_check.py
peitho/errors_and_parsers/ode_parsers/SBML_reactions.py
peitho/errors_and_parsers/ode_parsers/__init__.py
peitho/errors_and_parsers/ode_parsers/cudacodecreater.py
peitho/errors_and_parsers/ode_parsers/input_data_file_parser.py
peitho/errors_and_parsers/ode_parsers/parse_object_info.py
peitho/example_data/Hes1/hes1.cu
peitho/example_data/Hes1/hes1_P0.xml
peitho/example_data/Hes1/hes1_h.xml
peitho/example_data/Hes1/hes1_k1.xml
peitho/example_data/Hes1/hes1_v.xml
peitho/example_data/Repressilator/repressilator.data
peitho/example_data/Repressilator/repressilator.xml
peitho/example_data/p53/p53_4xk1a.data
peitho/example_data/p53/p53_4xk1b.data
peitho/example_data/p53/p53_4xk1c.data
peitho/example_data/p53/p53_4xk5a.data
peitho/example_data/p53/p53_4xk5b.data
peitho/example_data/p53/p53_4xk5c.data
peitho/example_data/p53/p53_WTa.data
peitho/example_data/p53/p53_WTb.data
peitho/example_data/p53/p53_WTc.data
peitho/example_data/p53/p53_model_exp.xml
peitho/example_data/p53/p53_model_ref.xml
peitho/example_data/p53/p53_ref.data
peitho/main/__init__.py
peitho/main/main.py
peitho/mut_Info/__init__.py
peitho/mut_Info/mutInfos/__init__.py
peitho/mut_Info/mutInfos/launch.py
peitho/mut_Info/mutInfos/mutInfo1.py
peitho/mut_Info/mutInfos/mutInfo2.py
peitho/mut_Info/mutInfos/mutInfo3.py
peitho/mut_Info/outputs/__init__.py
peitho/mut_Info/outputs/csv_output.py
peitho/mut_Info/outputs/plotbar.py
peitho/simulations/__init__.py
peitho/simulations/cudasim/EulerMaruyama.py
peitho/simulations/cudasim/EulerMaruyama_old.py
peitho/simulations/cudasim/Gillespie.py
peitho/simulations/cudasim/Lsoda.py
peitho/simulations/cudasim/MersenneTwister.cu
peitho/simulations/cudasim/MersenneTwister.dat
peitho/simulations/cudasim/SBMLParser.py
peitho/simulations/cudasim/Simulator.py
peitho/simulations/cudasim/WarpStandard.cu
peitho/simulations/cudasim/__init__.py
peitho/simulations/cudasim/cuLsoda_all.cu
peitho/simulations/simulate/__init__.py
peitho/simulations/simulate/simulation_functions.py