/target

# Generated experiment artifacts (reproducible via `cargo run --release`)
/artifacts

# Transient run logs / pid from the sweep orchestrator
/sweep.*
*.tmp

# Third-party AlphaMate source — clone separately (see research/repro/REPRODUCE.md)
/alphamate/AlphaMate-src/

# Generated AlphaMate run directories (large coancestry/Nrm matrices, reproducible)
/alphamate/run_mice*/
/alphamate/run*/

# Built manuscript artifacts (regenerate from the .tex with tectonic, or build_pdf.py + weasyprint)
/research/MANUSCRIPT.html
/research/MANUSCRIPT.pdf
/research/MANUSCRIPT_fr.html
/research/MANUSCRIPT_fr.pdf
/research/support_bound.pdf
/research/support_bound_fr.pdf

# Private outreach drafts — kept local, never published
/research/contact_*.md

# Python bindings: virtualenv, compiled extension, caches (rebuild: maturin develop)
/.venv/
__pycache__/
*.py[cod]
*.abi3.so
.pytest_cache/
*.egg-info/
