LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
CIAlign/CIAlign
CIAlign/CIAlign.py
CIAlign/__init__.py
CIAlign/_version.py
CIAlign/argP.py
CIAlign/consensusSeq.py
CIAlign/cropDiv.py
CIAlign/cropSeq.py
CIAlign/insertions.py
CIAlign/matrices.py
CIAlign/matrices.txt
CIAlign/miniAlignments.py
CIAlign/palettes.py
CIAlign/parsingFunctions.py
CIAlign/ranges.txt
CIAlign/runCIAlign.py
CIAlign/similarityMatrix.py
CIAlign/utilityFunctions.py
CIAlign/similarity_matrices/BLOSUM100
CIAlign/similarity_matrices/BLOSUM30
CIAlign/similarity_matrices/BLOSUM35
CIAlign/similarity_matrices/BLOSUM40
CIAlign/similarity_matrices/BLOSUM45
CIAlign/similarity_matrices/BLOSUM50
CIAlign/similarity_matrices/BLOSUM55
CIAlign/similarity_matrices/BLOSUM60
CIAlign/similarity_matrices/BLOSUM62
CIAlign/similarity_matrices/BLOSUM65
CIAlign/similarity_matrices/BLOSUM70
CIAlign/similarity_matrices/BLOSUM75
CIAlign/similarity_matrices/BLOSUM80
CIAlign/similarity_matrices/BLOSUM85
CIAlign/similarity_matrices/BLOSUM90
CIAlign/similarity_matrices/BLOSUMN
CIAlign/similarity_matrices/DAYHOFF
CIAlign/similarity_matrices/GONNET
CIAlign/similarity_matrices/IDENTITY
CIAlign/similarity_matrices/MATCH
CIAlign/similarity_matrices/NUC.4.2
CIAlign/similarity_matrices/NUC.4.4
CIAlign/similarity_matrices/PAM10
CIAlign/similarity_matrices/PAM100
CIAlign/similarity_matrices/PAM110
CIAlign/similarity_matrices/PAM120
CIAlign/similarity_matrices/PAM130
CIAlign/similarity_matrices/PAM140
CIAlign/similarity_matrices/PAM150
CIAlign/similarity_matrices/PAM160
CIAlign/similarity_matrices/PAM170
CIAlign/similarity_matrices/PAM180
CIAlign/similarity_matrices/PAM190
CIAlign/similarity_matrices/PAM20
CIAlign/similarity_matrices/PAM200
CIAlign/similarity_matrices/PAM210
CIAlign/similarity_matrices/PAM220
CIAlign/similarity_matrices/PAM230
CIAlign/similarity_matrices/PAM240
CIAlign/similarity_matrices/PAM250
CIAlign/similarity_matrices/PAM260
CIAlign/similarity_matrices/PAM270
CIAlign/similarity_matrices/PAM280
CIAlign/similarity_matrices/PAM290
CIAlign/similarity_matrices/PAM30
CIAlign/similarity_matrices/PAM300
CIAlign/similarity_matrices/PAM310
CIAlign/similarity_matrices/PAM320
CIAlign/similarity_matrices/PAM330
CIAlign/similarity_matrices/PAM340
CIAlign/similarity_matrices/PAM350
CIAlign/similarity_matrices/PAM360
CIAlign/similarity_matrices/PAM370
CIAlign/similarity_matrices/PAM380
CIAlign/similarity_matrices/PAM390
CIAlign/similarity_matrices/PAM40
CIAlign/similarity_matrices/PAM400
CIAlign/similarity_matrices/PAM410
CIAlign/similarity_matrices/PAM420
CIAlign/similarity_matrices/PAM430
CIAlign/similarity_matrices/PAM440
CIAlign/similarity_matrices/PAM450
CIAlign/similarity_matrices/PAM460
CIAlign/similarity_matrices/PAM470
CIAlign/similarity_matrices/PAM480
CIAlign/similarity_matrices/PAM490
CIAlign/similarity_matrices/PAM50
CIAlign/similarity_matrices/PAM500
CIAlign/similarity_matrices/PAM60
CIAlign/similarity_matrices/PAM70
CIAlign/similarity_matrices/PAM80
CIAlign/similarity_matrices/PAM90
cialign.egg-info/PKG-INFO
cialign.egg-info/SOURCES.txt
cialign.egg-info/dependency_links.txt
cialign.egg-info/requires.txt
cialign.egg-info/top_level.txt
tests/__init__.py
tests/consensusSeqTest.py
tests/cropSeqTest.py
tests/helperFunctions.py
tests/miniAlignmentsTest.py
tests/palettesTest.py
tests/parsingFunctionsTest.py
tests/pwmTest.py
tests/similarityMatrixTest.py
tests/utilityFunctionsTest.py