.gitignore
LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
setup.cfg
setup.py
tox.ini
.github/workflows/deploy.yml
.github/workflows/run-tests.yml
custom_configs/custom_finetuning.yaml
custom_configs/custom_training_bifpn.yaml
custom_configs/custom_training_pdl.yaml
empanada/__init__.py
empanada/_version.py
empanada/array_utils.py
empanada/config_loaders.py
empanada/consensus.py
empanada/losses.py
empanada/metrics.py
empanada/zarr_utils.py
empanada/data/__init__.py
empanada/data/_base.py
empanada/data/bc_dataset.py
empanada/data/panoptic_dataset.py
empanada/data/single_class_instance_dataset.py
empanada/data/volume_dataset.py
empanada/data/utils/__init__.py
empanada/data/utils/sampler.py
empanada/data/utils/target_creation.py
empanada/data/utils/transforms.py
empanada/evaluation/__init__.py
empanada/evaluation/evaluator.py
empanada/evaluation/instance_metrics.py
empanada/evaluation/panoptic_metrics.py
empanada/evaluation/semantic_metrics.py
empanada/inference/__init__.py
empanada/inference/engines.py
empanada/inference/filters.py
empanada/inference/matcher.py
empanada/inference/patterns.py
empanada/inference/postprocess.py
empanada/inference/rle.py
empanada/inference/tile.py
empanada/inference/tracker.py
empanada/inference/watershed.py
empanada/models/__init__.py
empanada/models/blocks.py
empanada/models/heads.py
empanada/models/panoptic_bifpn.py
empanada/models/panoptic_deeplab.py
empanada/models/point_rend.py
empanada/models/decoders/__init__.py
empanada/models/decoders/aspp.py
empanada/models/decoders/bifpn.py
empanada/models/decoders/panoptic_deeplab.py
empanada/models/encoders/__init__.py
empanada/models/encoders/regnet.py
empanada/models/encoders/resnet.py
empanada/models/quantization/__init__.py
empanada/models/quantization/panoptic_bifpn.py
empanada/models/quantization/panoptic_deeplab.py
empanada/models/quantization/point_rend.py
empanada/models/quantization/decoders/__init__.py
empanada/models/quantization/decoders/panoptic_deeplab.py
empanada/models/quantization/encoders/__init__.py
empanada/models/quantization/encoders/regnet.py
empanada/models/quantization/encoders/resnet.py
empanada_napari/__init__.py
empanada_napari/_accuracy_metrics.py
empanada_napari/_create_tiles.py
empanada_napari/_export_batch_segs.py
empanada_napari/_export_import_models.py
empanada_napari/_filter_small_labels.py
empanada_napari/_finetune.py
empanada_napari/_label_counter_widget.py
empanada_napari/_merge_split_widget.py
empanada_napari/_open_docs.py
empanada_napari/_pick_patches.py
empanada_napari/_register_model.py
empanada_napari/_slice_inference.py
empanada_napari/_train.py
empanada_napari/_version.py
empanada_napari/_visualize_patches_from_points.py
empanada_napari/_volume_inference.py
empanada_napari/finetune.py
empanada_napari/inference.py
empanada_napari/multigpu.py
empanada_napari/napari.yaml
empanada_napari/train.py
empanada_napari/utils.py
empanada_napari.egg-info/PKG-INFO
empanada_napari.egg-info/SOURCES.txt
empanada_napari.egg-info/dependency_links.txt
empanada_napari.egg-info/entry_points.txt
empanada_napari.egg-info/requires.txt
empanada_napari.egg-info/top_level.txt
empanada_napari/configs/DropNet_base_v1.yaml
empanada_napari/configs/MitoNet_v1.yaml
empanada_napari/configs/MitoNet_v1_mini.yaml
empanada_napari/configs/NucleoNet_base_v2.yaml
empanada_napari/resources/empanada_logo.png
empanada_napari/training/bifpn_model.yaml
empanada_napari/training/finetune_config.yaml
empanada_napari/training/pdl_model.yaml
empanada_napari/training/train_config.yaml
images/demo.gif
tests/__init__.py
tests/conftest.py
tests/pytest.ini
tests/run_container_tests.sh
tests/run_plugin_tests.sh
tests/test_array_utils.py
tests/test_button_widgets.py
tests/test_install.py
tests/test_install_extended.py
tests/test_model_benchmark.py
tests/test_transforms.py
tests/test_zarr_utils.py