# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# Distribution / packaging
.Python
build/
dist/
*.egg-info/
*.egg
wheels/
pip-wheel-metadata/

# Versioning artifact from setuptools-scm
src/fastmdxplora/_version.py
shim-package/src/fastmdx/_version.py

# Test / coverage artifacts
.pytest_cache/
.coverage
htmlcov/
coverage.xml
.tox/
.cache/

# Virtual environments
.venv/
venv/
env/
.env
.micromamba-bin/
.micromamba-root/

# uv
.uv-cache/

# Editor / OS
.vscode/
.idea/
*.swp
*.swo
.DS_Store
Thumbs.db

# Documentation builds
docs/_build/
docs/build/
site/

# FastMDXplora run outputs (do not commit user data)
fastmdxplora_output_*/
local_pdbs/
local_runs/
private_reports/

# The default output name is covered above, but --output takes any path and
# the documented example is `runs/`. A trajectory is large, it is the user's
# data, and `git add -A` during a run would commit a directory being written to.
runs/
run/
