Metadata-Version: 1.0
Name: AntimonyCombinations
Version: 0.0.3
Summary: UNKNOWN
Home-page: https://github.com/CiaranWelsh/AntimonyCombinations
Author: Ciaran Welsh
Author-email: ciaran.welsh@newcastle.ac.uk
License: MIT
Description: # AntimonyCombinations
        ![Build Status](https://travis-ci.org/CiaranWelsh/AntimonyCombinations.svg?branch=master&style=flat)
        [![codecov](https://codecov.io/gh/CiaranWelsh/AntimonyCombinations/branch/master/graph/badge.svg)](https://codecov.io/gh/CiaranWelsh/AntimonyCombinations)
        [![docs](https://readthedocs.org/projects/antimonycombinations/badge/?version=latest&style=flat)](https://antimonycombinations.readthedocs.io/en/latest/)
        
        `AntimonyCombinations` is a package developed on top of 
        [tellurium](http://tellurium.analogmachine.org/) and 
        [antimony](http://antimony.sourceforge.net/) for building 
        [sbml](http://sbml.org/Main_Page) models in a combinatorial
        way. 
        
        The idea is that you have a core model which you 
        are more confident in regarding its structure and an arbitrary
        number of additional hypotheses, called hypothesis extensions.
        `AntimonyCombinations` provides a way of quickly building the
        comprehensive set of model topologies, given the core hypothesis
        and hypothesis extensions. 
        
        ## Installation
        
        `$ pip install AntimonyCombinations`
            
        ## Import
        
        `>>> from antimony_combinations import Combinations, HypothesisExtension`
        
        ## [See documentation here](https://antimonycombinations.readthedocs.io/en/latest/)
        
        ## Parameter estimations and model selection
        The precursor to this package was designed for a comprehensive model selection problem which used `tellurium` and `antimony` for constructing `sbml` models, and `pycotools3` and `COPASI` for configuring and running parameter estimations. This can be, but is not currently supported. It is on the `todo` list. 
        
        Since connecting with COPASI in this way isn't ideal it would also be advantageous to support a second backend that doesn't rely on COPASI. This is a work in progress. 
        
        
        
        
        
        
        
        
        
        
        
        
        
        
        
        
        
        
        
        
        
        
Keywords: SBML,antimony,tellurium,model selection,combinations,model merging
Platform: UNKNOWN
