Metadata-Version: 1.0
Name: shogen2
Version: 1.1
Summary: Finding shortest genome segments that regulate metabolic pathways
Home-page: http://pypi.python.org/pypi/shogen2/
Author: Sven Thiele
Author-email: sthiele78@gmail.com
License: GPLv3+
Description: 
        Installation
        ============
        
        
        You can install shogen2 by running::
        
        	$ pip install shogen2
        
        
        Usage
        =====
        
        Typical usage is::
        	
        	$ shogen2.py [options] genomefile metabolismfile.sbml catalysationfile queries
        	
        	Options:
        	  -h, --help   show this help message and exit
        	  -k K, --k=K  Number of ranked  shortest genome segments (Default to 5)
        	  -l L, --l=L  maximum length of a genome segment (Default to 200)
        	  
        	  
        	  
        Samples
        =======
        
        Sample files for finding functional gene units in e. coli are available here::
              genome.txt_ metabolism.sbml_ catalyze.txt_ queries.txt_
        
        .. _genome.txt: http://bioasp.github.io/downloads/samples/ecoli_K12data/genome.txt
        .. _metabolism.sbml: http://bioasp.github.io/downloads/samples/ecoli_K12data/metabolism.sbml
        .. _catalyze.txt: http://bioasp.github.io/downloads/samples/ecoli_K12data/catalyze.txt
        .. _queries.txt: http://bioasp.github.io/downloads/samples/ecoli_K12data/queries.txt
        
Platform: UNKNOWN
