.gitignore
LICENSE
README.rst
requirements.txt
setup.py
docs/Makefile
docs/conf.py
docs/example_01_link.rst
docs/example_02_link.rst
docs/example_03_link.rst
docs/example_04_link.rst
docs/index.rst
docs/index_suffix.rst
docs/make.bat
docs/requirements.txt
docs/source/about.rst
docs/source/example_analyses.rst
docs/source/hybkit.analysis.rst
docs/source/hybkit.errors.rst
docs/source/hybkit.plot.rst
docs/source/hybkit.rst
docs/source/hybkit.settings.rst
docs/source/hybkit.type_finder.rst
docs/source/hybkit.util.rst
docs/source/hybkit_api.rst
docs/source/hybkit_toolkit.rst
docs/source/specification.rst
docs/source/toolkit/hyb_analyze.rst
docs/source/toolkit/hyb_check.rst
docs/source/toolkit/hyb_eval.rst
docs/source/toolkit/hyb_filter.rst
example_01_type_mirna_analysis/README.rst
example_01_type_mirna_analysis/analysis_python.py
example_01_type_mirna_analysis/analysis_shell.sh
example_01_type_mirna_analysis/download_data.sh
example_01_type_mirna_analysis/string_match_legend.csv
example_02_target_analysis/README.rst
example_02_target_analysis/analysis_python.py
example_02_target_analysis/analysis_shell.sh
example_02_target_analysis/download_data.sh
example_02_target_analysis/string_match_legend.csv
example_03_grouped_target_analysis/README.rst
example_03_grouped_target_analysis/analysis_python.py
example_03_grouped_target_analysis/analysis_shell.sh
example_03_grouped_target_analysis/download_data.sh
example_03_grouped_target_analysis/string_match_legend.csv
example_04_fold_analysis/README.rst
example_04_fold_analysis/analysis_python.py
example_04_fold_analysis/analysis_shell.sh
example_04_fold_analysis/download_data.sh
example_04_fold_analysis/string_match_legend.csv
hybkit/__about__.py
hybkit/__init__.py
hybkit/analysis.py
hybkit/errors.py
hybkit/plot.py
hybkit/settings.py
hybkit/string_match_params.csv
hybkit/type_finder.py
hybkit/util.py
hybkit.egg-info/PKG-INFO
hybkit.egg-info/SOURCES.txt
hybkit.egg-info/dependency_links.txt
hybkit.egg-info/requires.txt
hybkit.egg-info/top_level.txt
ref_data/WT_BR1_comp_hOH7_KSHV_hybrids_ua.hyb.gz
ref_data/WT_BR1_comp_hOH7_KSHV_hybrids_ua.vienna.gz
scripts/hyb_analyze
scripts/hyb_check
scripts/hyb_eval
scripts/hyb_filter