.coveragerc
.gitignore
.readthedocs.yaml
CHANGELOG.md
CODE_OF_CONDUCT.md
LICENSE
README.md
README.pypi
codecov.yml
pyproject.toml
setup.cfg
setup.py
tox.ini
.github/ISSUE_TEMPLATE.md
.github/PULL_REQUEST_TEMPLATE.md
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/rebase.yml
.github/workflows/release.yml
.github/workflows/test.yml
Orange3_SingleCell.egg-info/PKG-INFO
Orange3_SingleCell.egg-info/SOURCES.txt
Orange3_SingleCell.egg-info/dependency_links.txt
Orange3_SingleCell.egg-info/entry_points.txt
Orange3_SingleCell.egg-info/namespace_packages.txt
Orange3_SingleCell.egg-info/not-zip-safe
Orange3_SingleCell.egg-info/requires.txt
Orange3_SingleCell.egg-info/top_level.txt
doc/Makefile
doc/conf.py
doc/index.rst
doc/make.bat
doc/widgets.json
doc/static/custom.css
doc/widgets/align_datasets.md
doc/widgets/batch_effect_removal.md
doc/widgets/dot_matrix.md
doc/widgets/filter.md
doc/widgets/load_data.md
doc/widgets/score_cells.md
doc/widgets/score_genes.md
doc/widgets/single_cell_datasets.md
doc/widgets/single_cell_preprocess.md
doc/widgets/spatial_autocorrelation.md
doc/widgets/icons/AlignDatasets.png
doc/widgets/icons/BatchEffectRemoval.png
doc/widgets/icons/DotMatrix.png
doc/widgets/icons/Filter.png
doc/widgets/icons/LoadData.png
doc/widgets/icons/LouvainClustering.png
doc/widgets/icons/MarkerGenes.png
doc/widgets/icons/Normalize.png
doc/widgets/icons/ScoreGenes.png
doc/widgets/icons/SingleCellDatasets.png
doc/widgets/icons/SingleCellPreprocess.png
doc/widgets/icons/scorecells.png
doc/widgets/images/Align_Datasets-stamped.png
doc/widgets/images/Batch_Effect_Removal-stamped.png
doc/widgets/images/Dot_Matrix-stamped.png
doc/widgets/images/Filter-Example.png
doc/widgets/images/Filter-stamped.png
doc/widgets/images/Load Data-stamped.png
doc/widgets/images/LouvainClustering-Example.png
doc/widgets/images/LouvainClustering-stamped.png
doc/widgets/images/Marker Genes-stamped.png
doc/widgets/images/Normalize-stamped.png
doc/widgets/images/ScoreCells-stamped.png
doc/widgets/images/ScoreGenes-stamped.png
doc/widgets/images/SingleCellDatasets-stamped.png
doc/widgets/images/SpatialAutocorrelation-Example.png
doc/widgets/images/SpatialAutocorrelation-stamped.png
doc/widgets/images/tSNE-Example.png
orangecontrib/__init__.py
orangecontrib/single_cell/__init__.py
orangecontrib/single_cell/reader.py
orangecontrib/single_cell/preprocess/__init__.py
orangecontrib/single_cell/preprocess/alignment.py
orangecontrib/single_cell/preprocess/biweight.py
orangecontrib/single_cell/preprocess/cca.py
orangecontrib/single_cell/preprocess/clusteranalysis.py
orangecontrib/single_cell/preprocess/harmony_full_numpy.py
orangecontrib/single_cell/preprocess/harmony_preprocess.py
orangecontrib/single_cell/preprocess/scbnorm.py
orangecontrib/single_cell/preprocess/scpreprocess.py
orangecontrib/single_cell/preprocess/data/bone_marrow_louvain.pickle
orangecontrib/single_cell/tests/__init__.py
orangecontrib/single_cell/tests/test_load_data.py
orangecontrib/single_cell/tests/test_owaligndatasets.py
orangecontrib/single_cell/tests/test_owbatchnorm.py
orangecontrib/single_cell/tests/test_owdatasets.py
orangecontrib/single_cell/tests/test_owdotmatrix.py
orangecontrib/single_cell/tests/test_owdropout.py
orangecontrib/single_cell/tests/test_owfilter.py
orangecontrib/single_cell/tests/test_owgenerank.py
orangecontrib/single_cell/tests/test_owloaddata.py
orangecontrib/single_cell/tests/test_owmultisample.py
orangecontrib/single_cell/tests/test_owscorecells.py
orangecontrib/single_cell/tests/test_owscoregenes.py
orangecontrib/single_cell/tests/test_owscpreprocess.py
orangecontrib/single_cell/tests/test_owspatialautocorrelation.py
orangecontrib/single_cell/tests/data/DATA_MATRIX_LOG_TPM.txt
orangecontrib/single_cell/tests/data/data.csv
orangecontrib/single_cell/tests/data/data.loom
orangecontrib/single_cell/tests/data/data.pkl
orangecontrib/single_cell/tests/data/data.txt.gz
orangecontrib/single_cell/tests/data/data.xls
orangecontrib/single_cell/tests/data/data.xlsx
orangecontrib/single_cell/tests/data/data_dense.h5ad
orangecontrib/single_cell/tests/data/data_sparse.h5ad
orangecontrib/single_cell/tests/data/dermatology.tab
orangecontrib/single_cell/tests/data/lib.cell.count
orangecontrib/single_cell/tests/data/lib.cell.meta
orangecontrib/single_cell/tests/data/010-Showcase-LoadDataM-Data/batch-A/barcodes.tsv
orangecontrib/single_cell/tests/data/010-Showcase-LoadDataM-Data/batch-A/genes.tsv
orangecontrib/single_cell/tests/data/010-Showcase-LoadDataM-Data/batch-A/matrix.mtx
orangecontrib/single_cell/tests/data/010-Showcase-LoadDataM-Data/batch-B/barcodes.tsv
orangecontrib/single_cell/tests/data/010-Showcase-LoadDataM-Data/batch-B/genes.tsv
orangecontrib/single_cell/tests/data/010-Showcase-LoadDataM-Data/batch-B/matrix.mtx
orangecontrib/single_cell/tests/data/010-Showcase-LoadDataM-Data/batch-C/barcodes.tsv
orangecontrib/single_cell/tests/data/010-Showcase-LoadDataM-Data/batch-C/genes.tsv
orangecontrib/single_cell/tests/data/010-Showcase-LoadDataM-Data/batch-C/matrix.mtx
orangecontrib/single_cell/tests/data/10x/hg19/barcodes.tsv
orangecontrib/single_cell/tests/data/10x/hg19/genes.tsv
orangecontrib/single_cell/tests/data/10x/hg19/matrix.mtx
orangecontrib/single_cell/tests/data/10x/mm10/barcodes.tsv
orangecontrib/single_cell/tests/data/10x/mm10/genes.tsv
orangecontrib/single_cell/tests/data/10x/mm10/matrix.mtx
orangecontrib/single_cell/tests/preprocess/__init__.py
orangecontrib/single_cell/tests/preprocess/test_alignment.py
orangecontrib/single_cell/tests/preprocess/test_cca.py
orangecontrib/single_cell/tests/preprocess/test_scbnorm.py
orangecontrib/single_cell/tests/preprocess/test_scpreprocess.py
orangecontrib/single_cell/widgets/__init__.py
orangecontrib/single_cell/widgets/contingency_table.py
orangecontrib/single_cell/widgets/load_data.py
orangecontrib/single_cell/widgets/owaligndatasets.py
orangecontrib/single_cell/widgets/owbatchnorm.py
orangecontrib/single_cell/widgets/owdotmatrix.py
orangecontrib/single_cell/widgets/owdropout.py
orangecontrib/single_cell/widgets/owfilter.py
orangecontrib/single_cell/widgets/owharmony.py
orangecontrib/single_cell/widgets/owloaddata.py
orangecontrib/single_cell/widgets/owmultisample.py
orangecontrib/single_cell/widgets/owscdatasets.py
orangecontrib/single_cell/widgets/owscorecells.py
orangecontrib/single_cell/widgets/owscoregenes.py
orangecontrib/single_cell/widgets/owscpreprocess.py
orangecontrib/single_cell/widgets/owspatialautocorrelation.py
orangecontrib/single_cell/widgets/icons/AlignDatasets.svg
orangecontrib/single_cell/widgets/icons/BatchEffectRemoval.svg
orangecontrib/single_cell/widgets/icons/Binarize.svg
orangecontrib/single_cell/widgets/icons/DotMatrix.svg
orangecontrib/single_cell/widgets/icons/Dropout.svg
orangecontrib/single_cell/widgets/icons/Filter.svg
orangecontrib/single_cell/widgets/icons/LoadData.svg
orangecontrib/single_cell/widgets/icons/LogarithmicScale.svg
orangecontrib/single_cell/widgets/icons/MarkerGenes.svg
orangecontrib/single_cell/widgets/icons/MultiSample.svg
orangecontrib/single_cell/widgets/icons/Normalize.svg
orangecontrib/single_cell/widgets/icons/Rank.svg
orangecontrib/single_cell/widgets/icons/ScoreCells.svg
orangecontrib/single_cell/widgets/icons/ScoreGenes.svg
orangecontrib/single_cell/widgets/icons/SelectGenes.svg
orangecontrib/single_cell/widgets/icons/SingleCellDatasets.svg
orangecontrib/single_cell/widgets/icons/SingleCellPreprocess.svg
orangecontrib/single_cell/widgets/icons/SpatialAutocorrelation.svg
orangecontrib/single_cell/widgets/icons/Standardize.svg
orangecontrib/single_cell/widgets/icons/VCFFile.svg
orangecontrib/single_cell/widgets/icons/category.svg