.gitignore
README.md
setup.py
cgecore/__init__.py
cgecore/alignment.py
cgecore/argumentparsing.py
cgecore/cgefinder.py
cgecore/cmdline.py
cgecore/utility.py
cgecore.egg-info/PKG-INFO
cgecore.egg-info/SOURCES.txt
cgecore.egg-info/dependency_links.txt
cgecore.egg-info/top_level.txt
cgecore/blaster/__init__.py
cgecore/blaster/blaster.py
cgecore/blaster/known_issues.txt
cgecore/blaster/run_blaster.py
cgecore/blaster/tests/functional_tests.py
cgecore/blaster/tests/unit_tests.py
cgecore/blaster/tests/data/test_db_01.fsa
cgecore/blaster/tests/data/test_isolate_01.fa