Metadata-Version: 1.1
Name: tmtk
Version: 0.5.8
Summary: A toolkit for ETL curation for the tranSMART data warehouse.
Home-page: https://www.github.com/thehyve/tmtk/
Author: Jochem Bijlard
Author-email: j.bijlard@gmail.com
License: UNKNOWN
Download-URL: https://github.com/thehyve/tmtk/tarball/0.5.8/
Description: ====
        tmtk
        ====
        
        Master:
        
        .. image:: https://travis-ci.org/thehyve/tmtk.svg?branch=master
            :target: https://travis-ci.org/thehyve/tmtk
        
        .. image:: https://codecov.io/gh/thehyve/tmtk/branch/master/graph/badge.svg
            :target: https://codecov.io/gh/thehyve/tmtk
        
        .. image:: https://readthedocs.org/projects/tmtk/badge/?version=latest
            :target: http://tmtk.readthedocs.io/en/latest/?badge=latest
            :alt: Documentation Status
        
        Develop:
        
        .. image:: https://travis-ci.org/thehyve/tmtk.svg?branch=develop
            :target: https://travis-ci.org/thehyve/tmtk
        
        .. image:: https://codecov.io/gh/thehyve/tmtk/branch/develop/graph/badge.svg
            :target: https://codecov.io/gh/thehyve/tmtk
        
        
        Anaconda Cloud latest package:
        
        .. image:: https://anaconda.org/conda-forge/tmtk/badges/version.svg
            :target: https://anaconda.org/conda-forge/tmtk
        
        
        A toolkit for ETL curation for the tranSMART data warehouse. The
        TranSMART curation toolkit (``tmtk``) can be used to edit and validate
        studies prior to loading them with `transmart-batch`_.
        
        For general documentation visit `readthedocs`_.
        
        Installation
        ------------
        
        Installing via Anaconda Cloud or Pip package managers
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        
        Anaconda:
        
        .. code:: sh
        
            conda install -c conda-forge tmtk
        
        Pip:
        
        .. code:: sh
        
            pip install tmtk
        
        Installing manually
        ^^^^^^^^^^^^^^^^^^^
        
        Initialize a virtualenv
        ~~~~~~~~~~~~~~~~~~~~~~~
        
        .. code:: bash
        
            python3 -m venv env
            source env/bin/activate
        
        
        Installation from source
        ~~~~~~~~~~~~~~~~~~~~~~~~
        
        To install *tmtk* and all dependencies into your Python environment,
        and enable the Arborist Jupyter notebook extension, run:
        
        .. code:: sh
        
            pip install -r requirements.txt
            python setup.py install
        
        or if you want to run the tool from code in development mode:
        
        .. code:: sh
        
            pip install -r requirements.txt
            python setup.py develop
            jupyter-nbextension install --py tmtk.arborist
            jupyter-serverextension enable tmtk.arborist
        
        
        Requirements
        ^^^^^^^^^^^^
        
        The dependencies are in ``requirements.txt``,
        optional dependencies are in ``requirements-dev.txt``.
        
        
        Licence
        -------
        
        LGPL-3.0
        
        .. _transmart-batch: https://github.com/thehyve/transmart-batch/
        .. _virtualenvwrapper: https://virtualenvwrapper.readthedocs.io
        .. _readthedocs: https://tmtk.readthedocs.io/en/latest/
        .. _examples: examples
        
Keywords: transmart,etl,arborist,concept tree
Platform: UNKNOWN
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
