pybedtools
pysam
click>=8.0.3
click-extra
cloup
rich
biopython
pandas
aiofiles
aiosqlite
natsort
numpy
uvloop

[dev]
GraTools[docs,test]

[docs]
sphinx>=5.0
sphinx-rtd-theme
sphinx-copybutton
sphinx-design
sphinxcontrib-napoleon
sphinxcontrib-autoprogram
autodocsumm
sphinx_automodapi
toml
click-extra[sphinx]<5.0.0
myst-parser

[test]
pytest>=7.0
pytest-cov
pytest-asyncio
