LICENSE
README.md
pyproject.toml
src/phu/__init__.py
src/phu/_click.py
src/phu/_exec.py
src/phu/avg.py
src/phu/avg_annotation.py
src/phu/avg_decisions.py
src/phu/avg_reference_db.py
src/phu/avger_annotation.py
src/phu/avger_classification.py
src/phu/avger_scoring.py
src/phu/cli.py
src/phu/cluster.py
src/phu/dbcan_db.py
src/phu/gene_prediction_core.py
src/phu/jack.py
src/phu/kofam_db.py
src/phu/pfam_db.py
src/phu/screen.py
src/phu/simplify_vcontact_taxa.py
src/phu/vscore_db.py
src/phu.egg-info/PKG-INFO
src/phu.egg-info/SOURCES.txt
src/phu.egg-info/dependency_links.txt
src/phu.egg-info/entry_points.txt
src/phu.egg-info/requires.txt
src/phu.egg-info/top_level.txt
src/phu/data/avger_classification_rules.json
tests/test_avg.py
tests/test_avg_annotation.py
tests/test_avg_decisions.py
tests/test_avg_reference_db.py
tests/test_avger_annotation.py
tests/test_avger_classification.py
tests/test_avger_scoring.py
tests/test_dbcan_db.py
tests/test_gene_prediction_core.py
tests/test_jackhmmer_shapes.py
tests/test_kofam_db.py
tests/test_pfam_db.py
tests/test_progress.py
tests/test_screen_all_cazymes.py
tests/test_screen_all_puls.py
tests/test_screen_dbcan_resolution.py
tests/test_screen_fasta_reader.py
tests/test_screen_kofam_thresholds.py
tests/test_screen_pfam_resolution.py
tests/test_seqclust_cli.py
tests/test_vscore_db.py