Metadata-Version: 2.3
Name: clinica-pydra-ants
Version: 0.1.1
Summary: Pydra tasks for ANTs designed for Clinica
Project-URL: Documentation, https://github.com/aramis-lab/clinica-pydra-ants#readme
Project-URL: Issues, https://github.com/aramis-lab/clinica-pydra-ants/issues
Project-URL: Source, https://github.com/aramis-lab/clinica-pydra-ants
Author-email: Ghislain Vaillant <ghislain.vaillant@inria.fr>
License-Expression: Apache-2.0
License-File: LICENSE
Keywords: ants,neuroimaging,pydra,registration
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Software Development :: Libraries
Requires-Python: >=3.8
Requires-Dist: attrs>=22.1.0
Requires-Dist: pydra>=0.22
Description-Content-Type: text/markdown

# clinica-pydra-ants

[![PyPI - Version][pypi-version]][pypi-project]
[![PyPI - Python Version][pypi-pyversions]][pypi-project]
![][status-test]

-----

Pydra tasks for ANTs designed for Clinica

[Pydra][pydra] is a dataflow engine which provides
a set of lightweight abstractions for DAG
construction, manipulation, and distributed execution.

[ANTs][ants] is a toolbox for multi-variate image registration,
segmentation and statistical analysis.

[Clinica][clinica] is a software platform for clinical neuroimaging studies.

**Table of Contents**

- [Available Tasks](#available-tasks)
- [Installation](#installation)
- [Development](#development)
- [License](#license)

## Available Tasks

- ApplyTransforms
- CreateJacobianDeterminantImage
- N4BiasFieldCorrection
- Registration, registration_syn, registration_syn_quick

## Installation

```console
pip install clinica-pydra-ants
```

A separate installation of ANTs is required to use this package.

An official conda package is available through conda-forge:

```console
conda install -c conda-forge ants
```

## Development

This project is managed with [Hatch][hatch]:

```console
pipx install hatch
```

To run the test suite:

```console
hatch run test
```

To fix linting issues:

```console
hatch fmt
```

## License

This project is distributed under the terms of the [Apache License, Version 2.0][license].

[ants]: https://github.com/ANTsX/ANTs

[hatch]: https://hatch.pypa.io/

[license]: https://spdx.org/licenses/Apache-2.0.html

[pydra]: https://pydra.readthedocs.io/

[pypi-project]: https://pypi.org/project/clinica-pydra-ants

[pypi-pyversions]: https://img.shields.io/pypi/pyversions/clinica-pydra-ants.svg

[pypi-version]: https://img.shields.io/pypi/v/clinica-pydra-ants.svg

[status-test]: https://github.com/aramis-lab/clinica-pydra-ants/actions/workflows/test.yaml/badge.svg

[clinica]: https://www.clinica.run/
