Metadata-Version: 1.0
Name: goldenhinges
Version: 0.2.1
Summary: DNA overhangs design for Golden Gate etc.
Home-page: https://github.com/Edinburgh-Genome-Foundry/GoldenHinges
Author: Zulko
Author-email: UNKNOWN
License: see LICENSE.txt
Description: Golden Hinges
        ==============
        Golden Hinges (full documentation `here <https://edinburgh-genome-foundry.github.io/GoldenHinges/>`_) is a Python library to find sets of overhangs (also called junctions, or protusions) for multipart DNA assembly such as Golden Gate assembly.
        
        Given a set of constraints (GC content bounds, differences between overhangs,
        mandatory and forbidden overhangs) Golden Hinges enables to find:
        
        - Maximal sets of valid and inter-compatible overhangs.
        - Sequence decompositions (i.e. position of cuts) which produce valid and
          inter-compatible overhangs, for type-2S DNA assembly.
        - Sequence mutations (subject to constraints) which enable the sequence
          decomposition, in extreme cases where the original sequence does not allow
          for such decomposition.
        
        Infos
        -----
        
        **PIP installation:**
        
        .. code:: bash
        
          pip install goldenhinges
        
        **Web documentation:**
        
        `<https://edinburgh-genome-foundry.github.io/GoldenHinges/>`_
        
        **Github Page (with examples)**
        
        `<https://github.com/Edinburgh-Genome-Foundry/GoldenHinges>`_
        
        **Live demo**
        
        `<http://cuba.genomefoundry.org/design_overhangs>`_
        
        **License:** MIT, Copyright Edinburgh Genome Foundry
        
        More biology software
        -----------------------
        
        .. image:: https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/Edinburgh-Genome-Foundry.github.io/master/static/imgs/logos/egf-codon-horizontal.png
          :target: https://edinburgh-genome-foundry.github.io/
        
        Golden Hinges is part of the `EGF Codons <https://edinburgh-genome-foundry.github.io/>`_ synthetic biology software suite for DNA design, manufacturing and validation.
        
Keywords: DNA assembly overhangs constraint-programming synthetic-biology
Platform: UNKNOWN
