.gitignore
.travis.yml
LICENCE.txt
MANIFEST.in
README.rst
ez_setup.py
pypi-readme.rst
setup.py
.cache/v/cache/lastfailed
docs/Makefile
docs/README.md
docs/conf.py
docs/favicon.png
docs/index.rst
docs/logo_small.png
docs/make.bat
docs/makehtml.sh
docs/ref.rst
docs/_static/css/main.css
docs/_static/images/example_ideal.png
docs/_static/images/pw_maze_dark.png
docs/_static/images/pw_maze_white.png
docs/_static/images/title.png
examples/find_sequence_decomposition_with_mutations.py
examples/generate_overhangs_set.py
examples/ogabe_decomposition.py
examples/using_preferred_overhangs_sets.py
examples/data/phage_sequence.txt
examples/data/sequence.gb
goldenhinges/OverhangSetOptimizer.py
goldenhinges/OverhangsSelector.py
goldenhinges/__init__.py
goldenhinges/biotools.py
goldenhinges/clique_methods.py
goldenhinges/reports.py
goldenhinges/version.py
goldenhinges.egg-info/PKG-INFO
goldenhinges.egg-info/SOURCES.txt
goldenhinges.egg-info/dependency_links.txt
goldenhinges.egg-info/requires.txt
goldenhinges.egg-info/top_level.txt
tests/test_basics.py
tests/test_data/phage_sequence.txt
tests/test_data/sequence.gb