.cirun.yml
.flake8
CONTRIBUTING.md
GOVERNANCE.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements-dev.txt
requirements-doc.txt
requirements-numpy1-dev.txt
requirements-numpy1.txt
requirements.txt
benchmarks/__init__.py
benchmarks/asv.conf.json
benchmarks/benchmarks_plink.py
benchmarks/benchmarks_stats.py
docs/.gitignore
docs/Makefile
docs/about.rst
docs/api.rst
docs/changelog.rst
docs/conf.py
docs/contributing.rst
docs/getting_started.rst
docs/how_do_i.rst
docs/index.rst
docs/news.rst
docs/user_guide.rst
docs/_static/data-structures-xarray.jpg
docs/_static/docsearch.sbt.css
docs/_static/docsearch.sbt.js
docs/_static/mydask.png
docs/_static/numfocus_logo.png
docs/_static/order.png
docs/_static/sgkit_blue_trnsprnt.png
docs/_static/sgkit_trnsprnt.png
docs/_static/switcher.json
docs/examples/1kg.schema.json
docs/examples/gwas_tutorial.ipynb
docs/examples/index.rst
docs/examples/relatedness_tutorial.ipynb
docs/extensions/typed_returns.py
docs/news/introducing_sgkit.md
sgkit/__init__.py
sgkit/_version.py
sgkit/accelerate.py
sgkit/cohorts.py
sgkit/display.py
sgkit/display_numba_fns.py
sgkit/distarray.py
sgkit/model.py
sgkit/py.typed
sgkit/testing.py
sgkit/typing.py
sgkit/utils.py
sgkit/variables.py
sgkit/window.py
sgkit.egg-info/PKG-INFO
sgkit.egg-info/SOURCES.txt
sgkit.egg-info/dependency_links.txt
sgkit.egg-info/not-zip-safe
sgkit.egg-info/requires.txt
sgkit.egg-info/top_level.txt
sgkit/distance/__init__.py
sgkit/distance/api.py
sgkit/distance/metrics.py
sgkit/io/__init__.py
sgkit/io/dataset.py
sgkit/io/utils.py
sgkit/io/bgen/__init__.py
sgkit/io/bgen/bgen_reader.py
sgkit/io/plink/__init__.py
sgkit/io/plink/plink_reader.py
sgkit/io/plink/plink_writer.py
sgkit/stats/__init__.py
sgkit/stats/aggregation.py
sgkit/stats/aggregation_numba_fns.py
sgkit/stats/association.py
sgkit/stats/cohort_numba_fns.py
sgkit/stats/conversion.py
sgkit/stats/conversion_numba_fns.py
sgkit/stats/genedrop.py
sgkit/stats/genedrop_numba_fns.py
sgkit/stats/genee.py
sgkit/stats/genee_momentchi2py.py
sgkit/stats/grm.py
sgkit/stats/hwe.py
sgkit/stats/ibs.py
sgkit/stats/ibs_numba_fns.py
sgkit/stats/ld.py
sgkit/stats/pc_relate.py
sgkit/stats/pca.py
sgkit/stats/pedigree.py
sgkit/stats/pedigree_numba_fns.py
sgkit/stats/popgen.py
sgkit/stats/popgen_numba_fns.py
sgkit/stats/preprocessing.py
sgkit/stats/regenie.py
sgkit/stats/truncated_svd.py
sgkit/stats/utils.py