Metadata-Version: 2.1
Name: findCPcli
Version: 0.0.8
Summary: findCP CLI package
Home-page: https://github.com/findCP/findCPcli
Author: Alex Oarga
Author-email: alex718123@gmail.com
License: UNKNOWN
Description: # findCPcli
        
        [![PyPI version](https://badge.fury.io/py/findCPcli.svg)](https://badge.fury.io/py/findCPcli) [![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0) [![Build Status](https://travis-ci.org/findCP/findCPcli.svg?branch=master)](https://travis-ci.org/findCP/findCPcli) [![Quality Gate Status](https://sonarcloud.io/api/project_badges/measure?project=findCP_findCPcli&metric=alert_status)](https://sonarcloud.io/dashboard?id=findCP_findCPcli) [![standard-readme compliant](https://img.shields.io/badge/readme%20style-standard-brightgreen.svg)](https://github.com/RichardLitt/standard-readme) [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
        
        # Source
        ## Table of Contents
        - [Install](#Install)
        - [Run](#Run)
        - [Maintainers](#maintainers)
        - [Contributing](#contributing)
        - [License](#license)
        
        ## Install
        ```
        $ pip install findCPcli
        ```
        
        ## Run
        ```sh
        $ findCPcli [-h] [-v] -i <input file> [-o <output file>]
                         [-cp <output file>] [-swD <output file>] [-sF <output file>]
                         [-swDF <output file>]
        
                               
        optional arguments:
          -h, --help           show this help message and exit
          -v, --verbose        Print feedback while running.
          -i <input file>      Input metabolic model. Allowed file formats: .xml .json
                               .yml
          -o <output file>     Output spreadsheet file with results. Allowed file
                               formats: .xls .xlsx .ods
          -cp <output file>    Output spreadsheet file with growth dependent
                               chokepoints. Allowed file formats: .xls .xlsx .ods
          -swD <output file>   Save output model without Dead End Metabolites. Allowed
                               file formats: .xml .json .yml
          -sF <output file>    Save output model with reactions bounds updated with
                               Flux Variability Analysis. Allowed file formats: .xml
                               .json .yml
          -swDF <output file>  Save output model with reactions bounds updated with
                               Flux Variability Analysis and without Dead End
                               Metabolites. Allowed file formats: .xml .json .yml
          -objective <reaction id>
                                Reaction id to be used as objective function with Flux
                                Balance Analysis
        ```
        
        
        ## Maintainers
        
        [@alexOarga](https://github.com/alexOarga)
        
        ## Contributing
        
        Feel free to dive in! [Open an issue](https://github.com/findCP/findCPcli/issues/new) or submit PRs.
        
        Standard Readme follows the [Contributor Covenant](http://contributor-covenant.org/version/1/3/0/) Code of Conduct.
        
        ## License
        
        [GPL](LICENSE) © Alex Oarga
        
        
        
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Operating System :: OS Independent
Requires-Python: >=3.5
Description-Content-Type: text/markdown
