.gitignore
.pre-commit-config.yaml
LICENSE
MANIFEST.in
README.md
pyproject.toml
pytest.ini
setup.cfg
setup.py
.github/workflows/test_and_deploy.yml
imlib/__init__.py
imlib.egg-info/PKG-INFO
imlib.egg-info/SOURCES.txt
imlib.egg-info/dependency_links.txt
imlib.egg-info/not-zip-safe
imlib.egg-info/requires.txt
imlib.egg-info/top_level.txt
imlib/IO/__init__.py
imlib/IO/cells.py
imlib/IO/surfaces.py
imlib/IO/yaml.py
imlib/array/__init__.py
imlib/array/filter.py
imlib/array/fit.py
imlib/array/locate.py
imlib/array/math.py
imlib/array/misc.py
imlib/array/size.py
imlib/bin/nifty_reg/LICENSE.txt
imlib/bin/nifty_reg/niftyreg-git.zip
imlib/bin/nifty_reg/niftyreg_version.txt
imlib/bin/nifty_reg/linux_x64/reg_aladin
imlib/bin/nifty_reg/linux_x64/reg_average
imlib/bin/nifty_reg/linux_x64/reg_f3d
imlib/bin/nifty_reg/linux_x64/reg_jacobian
imlib/bin/nifty_reg/linux_x64/reg_measure
imlib/bin/nifty_reg/linux_x64/reg_resample
imlib/bin/nifty_reg/linux_x64/reg_tools
imlib/bin/nifty_reg/linux_x64/reg_transform
imlib/bin/nifty_reg/osX/groupwise_niftyreg_params.sh
imlib/bin/nifty_reg/osX/groupwise_niftyreg_run.sh
imlib/bin/nifty_reg/osX/niftyreg_source.zip
imlib/bin/nifty_reg/osX/reg_aladin
imlib/bin/nifty_reg/osX/reg_average
imlib/bin/nifty_reg/osX/reg_f3d
imlib/bin/nifty_reg/osX/reg_jacobian
imlib/bin/nifty_reg/osX/reg_measure
imlib/bin/nifty_reg/osX/reg_resample
imlib/bin/nifty_reg/osX/reg_tools
imlib/bin/nifty_reg/osX/reg_transform
imlib/bin/nifty_reg/win64/reg_aladin.exe
imlib/bin/nifty_reg/win64/reg_average.exe
imlib/bin/nifty_reg/win64/reg_f3d.exe
imlib/bin/nifty_reg/win64/reg_jacobian.exe
imlib/bin/nifty_reg/win64/reg_measure.exe
imlib/bin/nifty_reg/win64/reg_resample.exe
imlib/bin/nifty_reg/win64/reg_tools.exe
imlib/bin/nifty_reg/win64/reg_transform.exe
imlib/bin/nifty_reg/win64/vcruntime140_1.dll
imlib/cells/__init__.py
imlib/cells/cells.py
imlib/cells/utils.py
imlib/general/__init__.py
imlib/general/config.py
imlib/general/exceptions.py
imlib/general/list.py
imlib/general/logging.py
imlib/general/numerical.py
imlib/general/parsing.py
imlib/general/pathlib.py
imlib/general/string.py
imlib/general/system.py
imlib/image/__init__.py
imlib/image/binning.py
imlib/image/masking.py
imlib/image/metadata.py
imlib/image/nii.py
imlib/image/objects.py
imlib/image/orient.py
imlib/image/scale.py
imlib/image/shape.py
imlib/image/size.py
imlib/math/__init__.py
imlib/math/trig.py
imlib/pandas/__init__.py
imlib/pandas/misc.py
imlib/pandas/query.py
imlib/plotting/__init__.py
imlib/plotting/colors.py
imlib/plotting/matplotlib.py
imlib/plotting/seaborn.py
imlib/radial/__init__.py
imlib/radial/distributions.py
imlib/radial/misc.py
imlib/radial/temporal.py
imlib/register/__init__.py
imlib/register/niftyreg/__init__.py
imlib/register/niftyreg/transform.py
imlib/source/__init__.py
imlib/source/amap_source_files.py
imlib/source/niftyreg_binaries.py
imlib/source/source_files.py
tests/data/IO/roi_sorter_output/Cell_220396_z358_y564_x4056
tests/data/IO/roi_sorter_output/Cell_220422_z367_y677_x4395
tests/data/IO/roi_sorter_output/Cell_220621_z439_y735_x4351
tests/data/IO/roi_sorter_output/Cell_221379_z570_y267_x3989
tests/data/cells/cells.xml
tests/data/cells/cells.yml
tests/data/cells/cells_two_types.xml
tests/data/cube_extract/cubes/pCellz10y522x392Ch0.tif
tests/data/cube_extract/cubes/pCellz10y522x392Ch1.tif
tests/data/cube_extract/cubes/pCellz15y1004x340Ch0.tif
tests/data/cube_extract/cubes/pCellz15y1004x340Ch1.tif
tests/data/cubes/pCellz222y2805x9962Ch1.tif
tests/data/cubes/pCellz222y2805x9962Ch2.tif
tests/data/cubes/pCellz258y3892x10559Ch1.tif
tests/data/cubes/pCellz258y3892x10559Ch2.tif
tests/data/cubes/pCellz413y2308x9391Ch1.tif
tests/data/cubes/pCellz413y2308x9391Ch2.tif
tests/data/cubes/pCellz416y2503x5997Ch1.tif
tests/data/cubes/pCellz416y2503x5997Ch2.tif
tests/data/cubes/pCellz418y5457x9489Ch1.tif
tests/data/cubes/pCellz418y5457x9489Ch2.tif
tests/data/cubes/pCellz433y4425x7552Ch1.tif
tests/data/cubes/pCellz433y4425x7552Ch2.tif
tests/data/general/jabberwocky.txt
tests/data/general/jabberwocky_sorted.txt
tests/data/metadata/BakingTray_recipe.yml
tests/data/metadata/cellfinder_metadata.ini
tests/data/metadata/cellfinder_metadata_missing.ini
tests/data/metadata/mesoSPIM.raw_meta.txt
tests/data/metadata/unsupported_metadata.ini
tests/data/nii/conf.conf
tests/data/yaml/single_section.yml
tests/tests/test_unit/test_IO/test_cell_io.py
tests/tests/test_unit/test_IO/test_yaml_io.py
tests/tests/test_unit/test_array/test_array_misc.py
tests/tests/test_unit/test_cells/test_cell_utils.py
tests/tests/test_unit/test_cells/test_cells.py
tests/tests/test_unit/test_general/test_list.py
tests/tests/test_unit/test_general/test_numerical.py
tests/tests/test_unit/test_general/test_string.py
tests/tests/test_unit/test_general/test_system.py
tests/tests/test_unit/test_image/__init__.py
tests/tests/test_unit/test_image/test_binning.py
tests/tests/test_unit/test_image/test_masking.py
tests/tests/test_unit/test_image/test_metadata.py
tests/tests/test_unit/test_image/test_nii.py
tests/tests/test_unit/test_image/test_objects.py
tests/tests/test_unit/test_image/test_scale.py
tests/tests/test_unit/test_image/test_shape.py
tests/tests/test_unit/test_image/test_size.py
tests/tests/test_unit/test_pandas/test_pandas_misc.py
tests/tests/test_unit/test_pandas/test_pandas_query.py
tests/tests/test_unit/test_radial/test_radial_misc.py