Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Consequence	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	t_ref_count	t_alt_count	n_ref_count	n_alt_count	HGVSc	HGVSp	HGVSp_Short	Transcript_ID	RefSeq	Protein_position	Codons	Hotspot	COMMENTS
DNAH14	127602		GRCh37	1	225452898	225452898	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR018																					ENST00000445597.2:c.5599A>C	p.Lys1867Gln	p.K1867Q	ENST00000445597		1867	Aag/Cag	0	
CTNNA2	1496		GRCh37	2	80646578	80646578	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR018																					ENST00000402739.4:c.1142G>T	p.Arg381Leu	p.R381L	ENST00000402739	NM_001282597.1	381	cGg/cTg	0	
PAX3	5077		GRCh37	2	223161894	223161894	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR018																					ENST00000350526.4:c.124G>A	p.Gly42Ser	p.G42S	ENST00000350526	NM_181457.3	42	Ggc/Agc	0	
COL4A4	1286		GRCh37	2	227877014	227877014	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			brca_smc_2018_BR018																					ENST00000396625.3:c.4217-1G>T		p.X1406_splice	ENST00000396625	NM_000092.4	1406		0	
FBXL7	23194		GRCh37	5	15936718	15936718	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR018																					ENST00000504595.1:c.899T>C	p.Leu300Pro	p.L300P	ENST00000504595	NM_012304.4	300	cTc/cCc	0	
CDH18	1016		GRCh37	5	19571755	19571755	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR018																					ENST00000274170.4:c.1186G>T	p.Ala396Ser	p.A396S	ENST00000274170		396	Gcc/Tcc	0	
ZNF131	7690		GRCh37	5	43162022	43162022	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR018																					ENST00000509156.1:c.1043G>T	p.Arg348Leu	p.R348L	ENST00000509156		348	cGa/cTa	0	
GPR110			GRCh37	6	46977724	46977724	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR018																					ENST00000371253.2:c.1447G>T	p.Ala483Ser	p.A483S	ENST00000371253	NM_153840.2	483	Gcc/Tcc	0	
LAMA2	3908		GRCh37	6	129468165	129468165	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR018																					ENST00000421865.2:c.881G>A	p.Arg294Lys	p.R294K	ENST00000421865	NM_001079823.1	294	aGg/aAg	0	
ABCA13	154664		GRCh37	7	48315284	48315284	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR018																					ENST00000435803.1:c.6021A>T	p.Gln2007His	p.Q2007H	ENST00000435803	NM_152701.3	2007	caA/caT	0	
ABCA13	154664		GRCh37	7	48315652	48315652	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR018																					ENST00000435803.1:c.6389T>A	p.Leu2130His	p.L2130H	ENST00000435803	NM_152701.3	2130	cTt/cAt	0	
GFRA2	2675		GRCh37	8	21640349	21640349	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR018																					ENST00000517328.1:c.103C>A	p.Arg35Ser	p.R35S	ENST00000517328		35	Cgc/Agc	0	
KAT6A	7994		GRCh37	8	41794869	41794869	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR018																					ENST00000265713.2:c.3257G>A	p.Arg1086His	p.R1086H	ENST00000265713	NM_006766.3	1086	cGt/cAt	0	
LCN15	389812		GRCh37	9	139658933	139658933	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR018																					ENST00000316144.5:c.8C>T	p.Ser3Leu	p.S3L	ENST00000316144	NM_203347.1	3	tCa/tTa	0	
SKIDA1	387640		GRCh37	10	21804267	21804267	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR018																					ENST00000449193.2:c.2485C>T	p.Arg829Cys	p.R829C	ENST00000449193	NM_207371.3	829	Cgc/Tgc	0	
RHOBTB1	9886		GRCh37	10	62670715	62670715	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR018																					ENST00000337910.5:c.226G>A	p.Val76Met	p.V76M	ENST00000337910	NM_001242359.1	76	Gtg/Atg	0	
CDON	50937		GRCh37	11	125859619	125859619	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR018																					ENST00000392693.3:c.2686C>T	p.Pro896Ser	p.P896S	ENST00000392693	NM_001243597.1	896	Cca/Tca	0	
A2M	2		GRCh37	12	9268434	9268434	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR018																					ENST00000318602.7:c.12C>G	p.Asn4Lys	p.N4K	ENST00000318602	NM_000014.4	4	aaC/aaG	0	
CAND1	55832		GRCh37	12	67691600	67691600	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR018																					ENST00000545606.1:c.821A>G	p.Tyr274Cys	p.Y274C	ENST00000545606	NM_018448.3	274	tAc/tGc	0	
AACS	65985		GRCh37	12	125603201	125603201	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR018																					ENST00000316519.6:c.1011G>T	p.Met337Ile	p.M337I	ENST00000316519	NM_023928.3	337	atG/atT	0	
TRAV12-1	28674		GRCh37	14	22309767	22309767	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR018																					ENST00000390433.1:c.148G>A	p.Ala50Thr	p.A50T	ENST00000390433		50	Gct/Act	0	
C14orf93	60686		GRCh37	14	23459037	23459037	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR018																					ENST00000299088.6:c.998A>G	p.Asn333Ser	p.N333S	ENST00000299088	NM_001130708.1	333	aAt/aGt	0	
SNURF	8926		GRCh37	15	25223466	25223466	+	splice_donor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BR018																					ENST00000338094.6:c.*873+1G>C		p.X291_splice	ENST00000338094	NM_005678.3	291		0	
ZNF469	84627		GRCh37	16	88496871	88496871	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR018																					ENST00000437464.1:c.2993G>A	p.Arg998Lys	p.R998K	ENST00000437464	NM_001127464.1	998	aGa/aAa	0	
PLXNB2	23654		GRCh37	22	50727429	50727429	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR018																					ENST00000359337.4:c.1211C>G	p.Thr404Ser	p.T404S	ENST00000359337	NM_012401.3	404	aCt/aGt	0	
MED14	9282		GRCh37	X	40569307	40569307	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR018																					ENST00000324817.1:c.1097T>C	p.Val366Ala	p.V366A	ENST00000324817	NM_004229.3	366	gTc/gCc	0	
CCDC160	347475		GRCh37	X	133379690	133379690	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR018																					ENST00000370809.4:c.860C>T	p.Thr287Ile	p.T287I	ENST00000370809	NM_001101357.1	287	aCt/aTt	0	
INSIG2	51141		GRCh37	2	118854353	118854353	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR202																					ENST00000245787.4:c.221C>A	p.Pro74His	p.P74H	ENST00000245787	NM_016133.2	74	cCc/cAc	0	
TENM3	55714		GRCh37	4	183720893	183720893	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR202																					ENST00000511685.1:c.7489G>A	p.Gly2497Ser	p.G2497S	ENST00000511685		2497	Ggc/Agc	0	
DDB1	1642		GRCh37	11	61079299	61079299	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR202																					ENST00000301764.7:c.2234C>T	p.Thr745Met	p.T745M	ENST00000301764	NM_001923.4	745	aCg/aTg	0	
ABCA5	23461		GRCh37	17	67246625	67246625	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR202																					ENST00000392676.3:c.4673G>A	p.Ser1558Asn	p.S1558N	ENST00000392676		1558	aGc/aAc	0	
PGLYRP4	57115		GRCh37	1	153309661	153309661	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR175																					ENST00000359650.5:c.939C>G	p.Phe313Leu	p.F313L	ENST00000359650	NM_020393.2	313	ttC/ttG	0	
OR2T33	391195		GRCh37	1	248437083	248437083	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR196																					ENST00000318021.2:c.34C>T	p.Leu12Phe	p.L12F	ENST00000318021	NM_001004695.1	12	Ctc/Ttc	0	
EPHA6	285220		GRCh37	3	96706205	96706205	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR196																					ENST00000389672.5:c.482A>G	p.Asn161Ser	p.N161S	ENST00000389672	NM_001080448.2	161	aAt/aGt	0	
UNCX	340260		GRCh37	7	1273226	1273226	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR196																					ENST00000316333.8:c.345G>C	p.Trp115Cys	p.W115C	ENST00000316333	NM_001080461.1	115	tgG/tgC	0	
CTF1	1489		GRCh37	16	30913856	30913856	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR196																					ENST00000279804.2:c.602C>A	p.Ala201Asp	p.A201D	ENST00000279804	NM_001142544.1	201	gCc/gAc	0	
CETP	1071		GRCh37	16	57005937	57005937	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR196																					ENST00000200676.3:c.692A>G	p.Asp231Gly	p.D231G	ENST00000200676	NM_000078.2	231	gAc/gGc	0	
FBXL20	84961		GRCh37	17	37439062	37439062	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR196																					ENST00000264658.6:c.541C>T	p.Gln181Ter	p.Q181*	ENST00000264658	NM_032875.2	181	Caa/Taa	0	
CCNB3	85417		GRCh37	X	50031788	50031788	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR196																					ENST00000276014.7:c.105G>C	p.Glu35Asp	p.E35D	ENST00000276014	NM_033031.2	35	gaG/gaC	0	
AIM1L			GRCh37	1	26669288	26669288	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR194																					ENST00000308182.5:c.26A>C	p.Lys9Thr	p.K9T	ENST00000308182		9	aAg/aCg	0	
KIF21B	23046		GRCh37	1	200950194	200950194	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR194																					ENST00000422435.2:c.3873G>T	p.Lys1291Asn	p.K1291N	ENST00000422435	NM_001252100.1	1291	aaG/aaT	0	
DISC1	27185		GRCh37	1	231829655	231829655	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR194																					ENST00000439617.2:c.151G>A	p.Gly51Arg	p.G51R	ENST00000439617	NM_001164540.1	51	Ggg/Agg	0	
VPS54	51542		GRCh37	2	64189492	64189492	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR194																					ENST00000272322.4:c.710C>T	p.Ser237Phe	p.S237F	ENST00000272322		237	tCt/tTt	0	
AMER3	205147		GRCh37	2	131520310	131520310	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR194																					ENST00000321420.4:c.665T>C	p.Leu222Pro	p.L222P	ENST00000321420		222	cTc/cCc	0	
LCT	3938		GRCh37	2	136562621	136562621	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR194																					ENST00000264162.2:c.4180G>A	p.Gly1394Ser	p.G1394S	ENST00000264162	NM_002299.2	1394	Ggt/Agt	0	
RAPH1	65059		GRCh37	2	204360019	204360019	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR194																					ENST00000319170.5:c.58G>A	p.Glu20Lys	p.E20K	ENST00000319170	NM_213589.1	20	Gaa/Aaa	0	
ANKMY1	51281		GRCh37	2	241420374	241420374	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR194																					ENST00000272972.3:c.2759G>A	p.Cys920Tyr	p.C920Y	ENST00000272972	NM_016552.2	920	tGc/tAc	0	
CLASP2	23122		GRCh37	3	33580331	33580331	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR194																					ENST00000468888.2:c.3532G>A	p.Asp1178Asn	p.D1178N	ENST00000468888		1178	Gat/Aat	0	
ZNF654	55279		GRCh37	3	88189899	88189899	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR194																					ENST00000309495.5:c.1439C>G	p.Pro480Arg	p.P480R	ENST00000309495	NM_018293.2	480	cCt/cGt	0	
BOD1L1	259282		GRCh37	4	13616106	13616106	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR194																					ENST00000040738.5:c.888G>T	p.Glu296Asp	p.E296D	ENST00000040738	NM_148894.2	296	gaG/gaT	0	
FRAS1	80144		GRCh37	4	79296971	79296971	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR194																					ENST00000264895.6:c.3230G>A	p.Gly1077Asp	p.G1077D	ENST00000264895	NM_025074.6	1077	gGc/gAc	0	
PLEKHG4B	153478		GRCh37	5	182140	182140	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR194																					ENST00000283426.6:c.3518C>T	p.Thr1173Ile	p.T1173I	ENST00000283426	NM_052909.3	1173	aCa/aTa	0	
DNAH5	1767		GRCh37	5	13716733	13716733	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR194																					ENST00000265104.4:c.12772G>A	p.Asp4258Asn	p.D4258N	ENST00000265104	NM_001369.2	4258	Gac/Aac	0	
DMGDH	29958		GRCh37	5	78324255	78324255	+	splice_donor_variant	Splice_Site	SNP	C	C	A			brca_smc_2018_BR194																					ENST00000255189.3:c.2032+1G>T		p.X678_splice	ENST00000255189	NM_013391.3	678		0	
DCP2	167227		GRCh37	5	112337344	112337344	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR194																					ENST00000389063.2:c.779C>G	p.Pro260Arg	p.P260R	ENST00000389063	NM_152624.5	260	cCg/cGg	0	
CD74	972		GRCh37	5	149786858	149786858	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR194																					ENST00000009530.7:c.155G>T	p.Gly52Val	p.G52V	ENST00000009530		52	gGc/gTc	0	
IRF4	3662		GRCh37	6	397178	397178	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR194																					ENST00000380956.4:c.563C>T	p.Pro188Leu	p.P188L	ENST00000380956	NM_001195286.1	188	cCg/cTg	0	
PRRC2A	7916		GRCh37	6	31598431	31598431	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR194																					ENST00000376007.4:c.2318C>T	p.Ala773Val	p.A773V	ENST00000376007	NM_080686.2	773	gCa/gTa	0	
PKHD1	5314		GRCh37	6	51637512	51637512	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BR194																					ENST00000371117.3:c.8630C>G	p.Ser2877Ter	p.S2877*	ENST00000371117	NM_138694.3	2877	tCa/tGa	0	
PPP1R14C	81706		GRCh37	6	150464342	150464342	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR194																					ENST00000361131.4:c.14C>A	p.Thr5Lys	p.T5K	ENST00000361131	NM_030949.2	5	aCg/aAg	0	
RAPGEF5	9771		GRCh37	7	22165222	22165222	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR194																					ENST00000401957.2:c.1627G>T	p.Gly543Cys	p.G543C	ENST00000401957		543	Ggt/Tgt	0	
KIAA1324L	222223		GRCh37	7	86542480	86542480	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR194																					ENST00000450689.2:c.1772T>A	p.Ile591Asn	p.I591N	ENST00000450689	NM_001142749.2	591	aTc/aAc	0	
TRBV29-1	28558		GRCh37	7	142448628	142448628	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR194																					ENST00000422143.2:c.222T>A	p.Ser74Arg	p.S74R	ENST00000422143		74	agT/agA	0	
C10orf126	283080		GRCh37	10	29137274	29137274	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR194																					ENST00000375520.1:c.153G>T	p.Trp51Cys	p.W51C	ENST00000375520	NM_001278522.1	51	tgG/tgT	0	
ZFAND4	93550		GRCh37	10	46121439	46121439	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR194																					ENST00000344646.5:c.1832G>C	p.Arg611Thr	p.R611T	ENST00000344646	NM_174890.2	611	aGg/aCg	0	
CDH23	64072		GRCh37	10	73447477	73447477	+	splice_donor_variant	Splice_Site	SNP	G	G	T			brca_smc_2018_BR194																					ENST00000224721.6:c.2074+1G>T		p.X692_splice	ENST00000224721	NM_022124.5	692		0	
TLL2	7093		GRCh37	10	98133381	98133381	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR194																					ENST00000357947.3:c.2634G>T	p.Arg878Ser	p.R878S	ENST00000357947	NM_012465.3	878	agG/agT	0	
COL17A1	1308		GRCh37	10	105801242	105801242	+	splice_donor_variant	Splice_Site	SNP	C	C	A			brca_smc_2018_BR194																					ENST00000353479.5:c.2605+1G>T		p.X869_splice	ENST00000353479	NM_000494.3	869		0	
TESPA1	9840		GRCh37	12	55356290	55356290	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR194																					ENST00000316577.8:c.1392G>A	p.Trp464Ter	p.W464*	ENST00000316577	NM_001098815.2	464	tgG/tgA	0	
PCCA	5095		GRCh37	13	100953762	100953762	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR194																					ENST00000376285.1:c.1114G>A	p.Glu372Lys	p.E372K	ENST00000376285	NM_000282.3	372	Gaa/Aaa	0	
RIPK3	11035		GRCh37	14	24806567	24806567	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR194																					ENST00000216274.5:c.1000A>G	p.Ile334Val	p.I334V	ENST00000216274	NM_006871.3	334	Ata/Gta	0	
DYNC1H1	1778		GRCh37	14	102470891	102470891	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR194																					ENST00000360184.4:c.4920C>G	p.Ile1640Met	p.I1640M	ENST00000360184	NM_001376.4	1640	atC/atG	0	
SLC12A1	6557		GRCh37	15	48499917	48499917	+	start_lost	Translation_Start_Site	SNP	A	A	G			brca_smc_2018_BR194																					ENST00000380993.3:c.1A>G	p.Met1?	p.M1?	ENST00000380993	NM_000338.2	1	Atg/Gtg	0	
FAM92B	339145		GRCh37	16	85141536	85141536	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR194																					ENST00000539556.1:c.342C>G	p.Phe114Leu	p.F114L	ENST00000539556	NM_198491.1	114	ttC/ttG	0	
ZNF469	84627		GRCh37	16	88499984	88499984	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR194																					ENST00000437464.1:c.6022C>A	p.Leu2008Ile	p.L2008I	ENST00000437464	NM_001127464.1	2008	Cta/Ata	0	
USP6	9098		GRCh37	17	5052018	5052018	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR194																					ENST00000250066.6:c.2599G>C	p.Asp867His	p.D867H	ENST00000250066	NM_004505.2	867	Gac/Cac	0	
COL1A1	1277		GRCh37	17	48267461	48267461	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR194																					ENST00000225964.5:c.2460C>G	p.Asp820Glu	p.D820E	ENST00000225964	NM_000088.3	820	gaC/gaG	0	
SLC25A41	284427		GRCh37	19	6432166	6432166	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR194																					ENST00000321510.6:c.257T>G	p.Val86Gly	p.V86G	ENST00000321510	NM_173637.3	86	gTg/gGg	0	
TRMT1	55621		GRCh37	19	13223731	13223731	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR194																					ENST00000357720.4:c.736G>T	p.Val246Leu	p.V246L	ENST00000357720	NM_001136035.2	246	Gtg/Ttg	0	
LIG1	3978		GRCh37	19	48640327	48640327	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR194																					ENST00000263274.7:c.1269G>T	p.Lys423Asn	p.K423N	ENST00000263274	NM_000234.1	423	aaG/aaT	0	
TRPM2	7226		GRCh37	21	45819238	45819238	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR194																					ENST00000300482.5:c.2122G>C	p.Val708Leu	p.V708L	ENST00000300482		708	Gtg/Ctg	0	
YY2	404281		GRCh37	X	21875485	21875485	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR194																					ENST00000429584.2:c.883A>G	p.Ser295Gly	p.S295G	ENST00000429584	NM_206923.3	295	Agc/Ggc	0	
FAM155B	27112		GRCh37	X	68725128	68725128	+	start_lost	Translation_Start_Site	SNP	G	G	T			brca_smc_2018_BR194																					ENST00000252338.4:c.3G>T	p.Met1?	p.M1?	ENST00000252338	NM_015686.2	1	atG/atT	0	
ITM2A	9452		GRCh37	X	78616910	78616910	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR194																					ENST00000373298.2:c.619G>A	p.Asp207Asn	p.D207N	ENST00000373298	NM_004867.4	207	Gat/Aat	0	
GPC3	2719		GRCh37	X	132670228	132670228	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR194																					ENST00000370818.3:c.1667G>A	p.Gly556Glu	p.G556E	ENST00000370818	NM_001164618.1	556	gGg/gAg	0	
VPS13D	55187		GRCh37	1	12445321	12445321	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR187																					ENST00000358136.3:c.11373A>G	p.Ile3791Met	p.I3791M	ENST00000358136	NM_015378.2	3791	atA/atG	0	
AGO3	192669		GRCh37	1	36439031	36439031	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR187																					ENST00000373191.4:c.577C>G	p.Leu193Val	p.L193V	ENST00000373191	NM_024852.3	193	Ctg/Gtg	0	
ZFYVE9	9372		GRCh37	1	52703901	52703901	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BR187																					ENST00000287727.3:c.812C>G	p.Ser271Ter	p.S271*	ENST00000287727	NM_004799.3	271	tCa/tGa	0	
FNDC7	163479		GRCh37	1	109270603	109270603	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR187																					ENST00000370017.3:c.1285G>A	p.Asp429Asn	p.D429N	ENST00000370017	NM_001144937.1	429	Gac/Aac	0	
FAM63A			GRCh37	1	150972434	150972434	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR187																					ENST00000361936.5:c.742G>A	p.Glu248Lys	p.E248K	ENST00000361936	NM_018379.4	248	Gag/Aag	0	
MUC1	4582		GRCh37	1	155160224	155160224	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR187																					ENST00000368395.1:c.1055A>T	p.Tyr352Phe	p.Y352F	ENST00000368395	NM_001204285.1	352	tAt/tTt	0	
CD1B	910		GRCh37	1	158300612	158300612	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR187																					ENST00000368168.3:c.302A>T	p.Asp101Val	p.D101V	ENST00000368168	NM_001764.2	101	gAc/gTc	0	
CD244	51744		GRCh37	1	160811608	160811608	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR187																					ENST00000368033.3:c.145G>A	p.Asp49Asn	p.D49N	ENST00000368033		49	Gac/Aac	0	
PIK3C2B	5287		GRCh37	1	204416707	204416707	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BR187																					ENST00000367187.3:c.2347-1G>C		p.X783_splice	ENST00000367187	NM_002646.3	783		0	
PCNXL2			GRCh37	1	233122109	233122109	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR187																					ENST00000258229.9:c.5969C>T	p.Ser1990Leu	p.S1990L	ENST00000258229	NM_014801.3	1990	tCg/tTg	0	
APOB	338		GRCh37	2	21233496	21233496	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR187																					ENST00000233242.1:c.6244G>A	p.Glu2082Lys	p.E2082K	ENST00000233242	NM_000384.2	2082	Gag/Aag	0	
SLC30A3	7781		GRCh37	2	27481102	27481102	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR187																					ENST00000233535.4:c.351G>A	p.Met117Ile	p.M117I	ENST00000233535	NM_003459.4	117	atG/atA	0	
DYSF	8291		GRCh37	2	71827952	71827952	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR187																					ENST00000258104.3:c.3823G>C	p.Glu1275Gln	p.E1275Q	ENST00000258104	NM_003494.3	1275	Gag/Cag	0	
PLCL1	5334		GRCh37	2	198948840	198948840	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR187																					ENST00000428675.1:c.599C>T	p.Ser200Phe	p.S200F	ENST00000428675	NM_006226.3	200	tCt/tTt	0	
ALS2CR11			GRCh37	2	202359261	202359261	+	intron_variant	Intron	SNP	C	C	G			brca_smc_2018_BR187																					ENST00000286195.3:c.1581+1357G>C		p.*527*	ENST00000286195	NM_152525.5			0	
USP40	55230		GRCh37	2	234431829	234431829	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR187																					ENST00000251722.6:c.2185C>T	p.His729Tyr	p.H729Y	ENST00000251722		729	Cat/Tat	0	
KLHL30	377007		GRCh37	2	239049607	239049607	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR187																					ENST00000409223.1:c.212C>G	p.Ser71Cys	p.S71C	ENST00000409223		71	tCt/tGt	0	
OSBPL10	114884		GRCh37	3	32022550	32022550	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR187																					ENST00000396556.2:c.122C>G	p.Ser41Cys	p.S41C	ENST00000396556	NM_017784.4	41	tCc/tGc	0	
ADAMTS9	56999		GRCh37	3	64633620	64633620	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR187																					ENST00000498707.1:c.1706G>C	p.Gly569Ala	p.G569A	ENST00000498707	NM_182920.1	569	gGa/gCa	0	
TRIM42	287015		GRCh37	3	140401994	140401994	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR187																					ENST00000286349.3:c.1032C>G	p.Phe344Leu	p.F344L	ENST00000286349	NM_152616.4	344	ttC/ttG	0	
NLGN1	22871		GRCh37	3	173996926	173996926	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR187																					ENST00000457714.1:c.1135C>A	p.Leu379Ile	p.L379I	ENST00000457714	NM_014932.3	379	Ctc/Atc	0	
PIK3CA	5290		GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR187																					ENST00000263967.3:c.278G>T	p.Arg93Leu	p.R93L	ENST00000263967	NM_006218.2	93	cGg/cTg	0	
SPATA5	166378		GRCh37	4	123868481	123868481	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR187																					ENST00000274008.4:c.1552G>A	p.Glu518Lys	p.E518K	ENST00000274008	NM_145207.2	518	Gag/Aag	0	
USP38	84640		GRCh37	4	144108990	144108990	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR187																					ENST00000307017.4:c.694G>C	p.Glu232Gln	p.E232Q	ENST00000307017	NM_032557.5	232	Gaa/Caa	0	
CLCN3	1182		GRCh37	4	170641142	170641142	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR187																					ENST00000513761.1:c.2451C>G	p.Phe817Leu	p.F817L	ENST00000513761	NM_001829.3	817	ttC/ttG	0	
TERT	7015		GRCh37	5	1294171	1294171	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR187																					ENST00000310581.5:c.830G>C	p.Arg277Thr	p.R277T	ENST00000310581	NM_198253.2	277	aGa/aCa	0	
KIAA0947			GRCh37	5	5462943	5462943	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR187																					ENST00000296564.7:c.3496G>A	p.Glu1166Lys	p.E1166K	ENST00000296564	NM_015325.2	1166	Gag/Aag	0	
ISL1	3670		GRCh37	5	50683505	50683505	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR187																					ENST00000230658.7:c.400G>A	p.Asp134Asn	p.D134N	ENST00000230658	NM_002202.2	134	Gat/Aat	0	
ARHGEF28	64283		GRCh37	5	73069717	73069717	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR187																					ENST00000426542.2:c.513G>C	p.Met171Ile	p.M171I	ENST00000426542		171	atG/atC	0	
DDX46	9879		GRCh37	5	134106601	134106601	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR187																					ENST00000354283.4:c.359C>G	p.Ser120Cys	p.S120C	ENST00000354283		120	tCc/tGc	0	
PCDHA5	56143		GRCh37	5	140202790	140202790	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR187																					ENST00000529859.1:c.1430C>G	p.Ser477Cys	p.S477C	ENST00000529859	NM_018908.2	477	tCt/tGt	0	
PRPF4B	8899		GRCh37	6	4058961	4058961	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BR187																					ENST00000337659.6:c.2734-1G>A		p.X912_splice	ENST00000337659	NM_003913.4	912		0	
RREB1	6239		GRCh37	6	7231430	7231430	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BR187																					ENST00000349384.6:c.3098C>G	p.Ser1033Ter	p.S1033*	ENST00000349384	NM_001003698.3	1033	tCa/tGa	0	
HIVEP1	3096		GRCh37	6	12124284	12124284	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR187																					ENST00000379388.2:c.4256T>G	p.Val1419Gly	p.V1419G	ENST00000379388	NM_002114.2	1419	gTg/gGg	0	
SLC26A8	116369		GRCh37	6	35912046	35912046	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR187																					ENST00000355574.2:c.2544C>G	p.Ile848Met	p.I848M	ENST00000355574	NM_001193476.1	848	atC/atG	0	
FOXP4	116113		GRCh37	6	41566663	41566663	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR187																					ENST00000307972.4:c.2032G>C	p.Glu678Gln	p.E678Q	ENST00000307972		678	Gaa/Caa	0	
URGCP	55665		GRCh37	7	43916461	43916461	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR187																					ENST00000453200.1:c.2601C>A	p.Phe867Leu	p.F867L	ENST00000453200		867	ttC/ttA	0	
URGCP	55665		GRCh37	7	43916886	43916886	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR187																					ENST00000453200.1:c.2176C>T	p.Arg726Ter	p.R726*	ENST00000453200		726	Cga/Tga	0	
WBSCR22			GRCh37	7	73105328	73105328	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR187																					ENST00000265758.2:c.445C>A	p.Leu149Ile	p.L149I	ENST00000265758	NM_017528.4	149	Ctt/Att	0	
WWP1	11059		GRCh37	8	87464873	87464873	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR187																					ENST00000265428.4:c.2359C>T	p.Gln787Ter	p.Q787*	ENST00000265428		787	Cag/Tag	0	
PALM2	114299		GRCh37	9	112705380	112705380	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR187																					ENST00000374531.2:c.815C>A	p.Ala272Glu	p.A272E	ENST00000374531	NM_001037293.2	272	gCa/gAa	0	
MUSK	4593		GRCh37	9	113563011	113563011	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR187																					ENST00000374448.4:c.2353G>A	p.Val785Met	p.V785M	ENST00000374448	NM_005592.3	785	Gtg/Atg	0	
GAPVD1	26130		GRCh37	9	128117093	128117093	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR187																					ENST00000394104.2:c.3784G>C	p.Glu1262Gln	p.E1262Q	ENST00000394104	NM_001282679.1	1262	Gaa/Caa	0	
PLEKHA1	59338		GRCh37	10	124152765	124152765	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR187																					ENST00000368990.3:c.49G>C	p.Glu17Gln	p.E17Q	ENST00000368990	NM_001001974.2	17	Gaa/Caa	0	
KNDC1	85442		GRCh37	10	135000059	135000059	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR187																					ENST00000304613.3:c.1207C>T	p.Gln403Ter	p.Q403*	ENST00000304613		403	Cag/Tag	0	
OR52J3	119679		GRCh37	11	5067969	5067969	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR187																					ENST00000380370.1:c.214G>C	p.Asp72His	p.D72H	ENST00000380370	NM_001001916.2	72	Gat/Cat	0	
CSNK2A3	283106		GRCh37	11	11374351	11374351	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR187																					ENST00000528848.2:c.316T>G	p.Ser106Ala	p.S106A	ENST00000528848	NM_001256686.1	106	Tca/Gca	0	
LRP4	4038		GRCh37	11	46898015	46898015	+	splice_donor_variant	Splice_Site	SNP	A	A	T			brca_smc_2018_BR187																					ENST00000378623.1:c.3536+2T>A		p.X1179_splice	ENST00000378623	NM_002334.3	1179		0	
USP2	9099		GRCh37	11	119229837	119229837	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR187																					ENST00000260187.2:c.1069G>A	p.Asp357Asn	p.D357N	ENST00000260187	NM_004205.4	357	Gat/Aat	0	
CACNA1C	775		GRCh37	12	2800099	2800099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR187																					ENST00000347598.4:c.6295C>T	p.Gln2099Ter	p.Q2099*	ENST00000347598	NM_199460.2	2099	Caa/Taa	0	
ESPL1	9700		GRCh37	12	53679791	53679791	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR187																					ENST00000257934.4:c.3271C>T	p.Pro1091Ser	p.P1091S	ENST00000257934	NM_012291.4	1091	Cct/Tct	0	
GLIPR1L2	144321		GRCh37	12	75804371	75804371	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR187																					ENST00000550916.1:c.392G>T	p.Ser131Ile	p.S131I	ENST00000550916	NM_001270396.1	131	aGt/aTt	0	
OTOGL	283310		GRCh37	12	80750640	80750640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR187																					ENST00000547103.1:c.5902C>T	p.Gln1968Ter	p.Q1968*	ENST00000547103		1968	Caa/Taa	0	
C12orf74	338809		GRCh37	12	93100665	93100665	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR187																					ENST00000397833.3:c.258G>T	p.Lys86Asn	p.K86N	ENST00000397833	NM_001178097.2	86	aaG/aaT	0	
PLXNC1	10154		GRCh37	12	94637751	94637751	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR187																					ENST00000258526.4:c.2338G>C	p.Asp780His	p.D780H	ENST00000258526	NM_005761.2	780	Gat/Cat	0	
SSH1	54434		GRCh37	12	109182390	109182390	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR187																					ENST00000326495.5:c.2524C>A	p.Pro842Thr	p.P842T	ENST00000326495	NM_018984.3	842	Ccc/Acc	0	
CCDC63	160762		GRCh37	12	111321953	111321953	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR187																					ENST00000308208.5:c.973G>C	p.Asp325His	p.D325H	ENST00000308208	NM_152591.1	325	Gat/Cat	0	
EPSTI1	94240		GRCh37	13	43528091	43528091	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR187																					ENST00000398762.3:c.556C>G	p.Gln186Glu	p.Q186E	ENST00000398762		186	Cag/Gag	0	
GPC5	2262		GRCh37	13	92345530	92345530	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR187																					ENST00000377067.3:c.415G>A	p.Ala139Thr	p.A139T	ENST00000377067	NM_004466.4	139	Gct/Act	0	
UGGT2	55757		GRCh37	13	96553171	96553171	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR187																					ENST00000376747.3:c.2524G>C	p.Glu842Gln	p.E842Q	ENST00000376747	NM_020121.3	842	Gag/Cag	0	
NRL	4901		GRCh37	14	24579504	24579504	+	intron_variant	Intron	SNP	G	G	C			brca_smc_2018_BR187																					ENST00000561028.1:c.-28+4427C>G		p.*10*	ENST00000561028				0	
PLEKHD1	400224		GRCh37	14	69967621	69967621	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR187																					ENST00000322564.7:c.367G>C	p.Glu123Gln	p.E123Q	ENST00000322564	NM_001161498.1	123	Gag/Cag	0	
THSD4	79875		GRCh37	15	71535392	71535392	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BR187																					ENST00000355327.3:c.869C>G	p.Ser290Ter	p.S290*	ENST00000355327		290	tCa/tGa	0	
MYO9A	4649		GRCh37	15	72244206	72244206	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR187																					ENST00000356056.5:c.2214G>C	p.Leu738Phe	p.L738F	ENST00000356056	NM_006901.3	738	ttG/ttC	0	
CNTNAP4	85445		GRCh37	16	76528873	76528873	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR187																					ENST00000478060.1:c.1928C>T	p.Ser643Leu	p.S643L	ENST00000478060	NM_138994.3	643	tCg/tTg	0	
C1QBP	708		GRCh37	17	5336714	5336714	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR187																					ENST00000225698.4:c.598G>C	p.Glu200Gln	p.E200Q	ENST00000225698	NM_001212.3	200	Gag/Cag	0	
TP53	7157		GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR187																					ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc	0	
ODF4	146852		GRCh37	17	8243439	8243439	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR187																					ENST00000328248.2:c.70G>C	p.Gly24Arg	p.G24R	ENST00000328248	NM_153007.4	24	Gga/Cga	0	
TBX21	30009		GRCh37	17	45822199	45822199	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR187																					ENST00000177694.1:c.1075C>G	p.Leu359Val	p.L359V	ENST00000177694	NM_013351.1	359	Cta/Gta	0	
DCC	1630		GRCh37	18	50918204	50918204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR187																					ENST00000442544.2:c.2635C>T	p.Arg879Ter	p.R879*	ENST00000442544	NM_005215.3	879	Cga/Tga	0	
ANGPTL6	83854		GRCh37	19	10204169	10204169	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR187																					ENST00000253109.4:c.1078C>A	p.His360Asn	p.H360N	ENST00000253109	NM_031917.2	360	Cac/Aac	0	
UNC13A	23025		GRCh37	19	17753758	17753758	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR187																					ENST00000519716.2:c.2368G>A	p.Asp790Asn	p.D790N	ENST00000519716	NM_001080421.2	790	Gac/Aac	0	
CEACAM16	388551		GRCh37	19	45208925	45208925	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR187																					ENST00000405314.2:c.727G>A	p.Asp243Asn	p.D243N	ENST00000405314		243	Gac/Aac	0	
GLTSCR1			GRCh37	19	48197813	48197813	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR187																					ENST00000396720.3:c.2725C>T	p.Gln909Ter	p.Q909*	ENST00000396720	NM_015711.3	909	Cag/Tag	0	
C19orf68			GRCh37	19	48698465	48698465	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR187																					ENST00000328759.7:c.1144G>A	p.Glu382Lys	p.E382K	ENST00000328759		382	Gag/Aag	0	
KLK6	5653		GRCh37	19	51465026	51465026	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR187																					ENST00000310157.2:c.556G>A	p.Glu186Lys	p.E186K	ENST00000310157	NM_002774.3	186	Gag/Aag	0	
CACNG8	59283		GRCh37	19	54466449	54466449	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR187																					ENST00000270458.2:c.53G>T	p.Gly18Val	p.G18V	ENST00000270458	NM_031895.5	18	gGg/gTg	0	
NLRP9	338321		GRCh37	19	56244293	56244293	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR187																					ENST00000332836.2:c.904G>A	p.Glu302Lys	p.E302K	ENST00000332836	NM_176820.2	302	Gaa/Aaa	0	
NLRP11	204801		GRCh37	19	56320253	56320253	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR187																					ENST00000589093.1:c.1723G>C	p.Asp575His	p.D575H	ENST00000589093		575	Gac/Cac	0	
ZNF586	54807		GRCh37	19	58290380	58290380	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR187																					ENST00000396154.2:c.425G>A	p.Arg142Lys	p.R142K	ENST00000396154	NM_017652.3	142	aGa/aAa	0	
SLX4IP	128710		GRCh37	20	10602001	10602001	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR187																					ENST00000334534.5:c.445G>C	p.Glu149Gln	p.E149Q	ENST00000334534	NM_001009608.1	149	Gag/Cag	0	
URB1	9875		GRCh37	21	33735500	33735500	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR187																					ENST00000382751.3:c.1474G>C	p.Glu492Gln	p.E492Q	ENST00000382751	NM_014825.2	492	Gaa/Caa	0	
IGLV4-69	28784		GRCh37	22	22385572	22385572	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR187																					ENST00000390282.2:c.61C>A	p.Gln21Lys	p.Q21K	ENST00000390282		21	Cag/Aag	0	
ARSF	416		GRCh37	X	3019236	3019236	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR187																					ENST00000359361.2:c.1076T>A	p.Leu359His	p.L359H	ENST00000359361	NM_004042.4	359	cTt/cAt	0	
IQSEC2	23096		GRCh37	X	53349897	53349897	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR187																					ENST00000396435.3:c.425A>G	p.Gln142Arg	p.Q142R	ENST00000396435	NM_001111125.2	142	cAg/cGg	0	
NLGN3	54413		GRCh37	X	70375189	70375189	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR187																					ENST00000358741.3:c.703C>T	p.Leu235Phe	p.L235F	ENST00000358741	NM_181303.1	235	Ctc/Ttc	0	
HDX	139324		GRCh37	X	83723863	83723863	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR187																					ENST00000297977.5:c.868G>A	p.Glu290Lys	p.E290K	ENST00000297977	NM_001177479.1	290	Gaa/Aaa	0	
RAP1A	5906		GRCh37	1	112234032	112234032	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR023																					ENST00000356415.1:c.50C>G	p.Ser17Cys	p.S17C	ENST00000356415		17	tCt/tGt	0	
ADAM15	8751		GRCh37	1	155029704	155029704	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR023																					ENST00000356955.2:c.1189G>A	p.Ala397Thr	p.A397T	ENST00000356955	NM_207197.2	397	Gcc/Acc	0	
KIFAP3	22920		GRCh37	1	170024445	170024445	+	splice_donor_variant	Splice_Site	SNP	C	C	T			brca_smc_2018_BR023																					ENST00000361580.2:c.164+1G>A		p.X55_splice	ENST00000361580	NM_014970.3	55		0	
KIF14	9928		GRCh37	1	200587147	200587147	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR023																					ENST00000367350.4:c.705G>T	p.Leu235Phe	p.L235F	ENST00000367350	NM_014875.2	235	ttG/ttT	0	
KIF14	9928		GRCh37	1	200587308	200587308	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR023																					ENST00000367350.4:c.544G>C	p.Asp182His	p.D182H	ENST00000367350	NM_014875.2	182	Gat/Cat	0	
OR14I1	401994		GRCh37	1	248845563	248845563	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR023																					ENST00000342623.3:c.43T>G	p.Phe15Val	p.F15V	ENST00000342623	NM_001004734.1	15	Ttt/Gtt	0	
REV1	51455		GRCh37	2	100040696	100040696	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR023																					ENST00000258428.3:c.1594C>A	p.Leu532Ile	p.L532I	ENST00000258428	NM_001037872.1	532	Cta/Ata	0	
DYTN	391475		GRCh37	2	207528110	207528110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR023																					ENST00000452335.2:c.1150C>T	p.Gln384Ter	p.Q384*	ENST00000452335	NM_001093730.1	384	Cag/Tag	0	
CNTN4	152330		GRCh37	3	3078881	3078881	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR023																					ENST00000397461.1:c.1961G>C	p.Gly654Ala	p.G654A	ENST00000397461	NM_001206955.1	654	gGg/gCg	0	
ADAMTS16	170690		GRCh37	5	5182181	5182181	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR023																					ENST00000274181.7:c.526G>C	p.Ala176Pro	p.A176P	ENST00000274181	NM_139056.2	176	Gca/Cca	0	
TRERF1	55809		GRCh37	6	42236406	42236406	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR023																					ENST00000372922.4:c.923A>T	p.Gln308Leu	p.Q308L	ENST00000372922	NM_033502.2	308	cAg/cTg	0	
SLC25A27	9481		GRCh37	6	46626713	46626713	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR023																					ENST00000371347.5:c.313C>G	p.Arg105Gly	p.R105G	ENST00000371347	NM_004277.4	105	Cga/Gga	0	
FILIP1	27145		GRCh37	6	76072575	76072575	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR023																					ENST00000237172.7:c.335A>T	p.Glu112Val	p.E112V	ENST00000237172	NM_015687.2	112	gAg/gTg	0	
ZNF655	79027		GRCh37	7	99170482	99170482	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR023																					ENST00000252713.4:c.751C>G	p.Gln251Glu	p.Q251E	ENST00000252713		251	Cag/Gag	0	
TMEM55A			GRCh37	8	92007999	92007999	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR023																					ENST00000285419.3:c.680G>A	p.Trp227Ter	p.W227*	ENST00000285419	NM_018710.2	227	tGg/tAg	0	
ARHGAP22	58504		GRCh37	10	49791063	49791063	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR023																					ENST00000249601.4:c.169C>T	p.Arg57Cys	p.R57C	ENST00000249601	NM_021226.3	57	Cgc/Tgc	0	
HPS1	3257		GRCh37	10	100183539	100183539	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR023																					ENST00000325103.6:c.1503C>A	p.His501Gln	p.H501Q	ENST00000325103	NM_000195.3	501	caC/caA	0	
CCDC172	374355		GRCh37	10	118100344	118100344	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR023																					ENST00000333254.3:c.264T>G	p.Asn88Lys	p.N88K	ENST00000333254	NM_198515.2	88	aaT/aaG	0	
NAV2	89797		GRCh37	11	20099166	20099166	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR023																					ENST00000396087.3:c.5220G>C	p.Met1740Ile	p.M1740I	ENST00000396087	NM_001244963.1	1740	atG/atC	0	
GPRC5A	9052		GRCh37	12	13061396	13061396	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR023																					ENST00000014914.5:c.213C>A	p.Phe71Leu	p.F71L	ENST00000014914	NM_003979.3	71	ttC/ttA	0	
HCFC2	29915		GRCh37	12	104492143	104492143	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR023																					ENST00000229330.4:c.1763T>C	p.Val588Ala	p.V588A	ENST00000229330	NM_013320.2	588	gTg/gCg	0	
CCDC62	84660		GRCh37	12	123286298	123286298	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR023																					ENST00000253079.6:c.1605G>C	p.Met535Ile	p.M535I	ENST00000253079	NM_201435.4	535	atG/atC	0	
C14orf183			GRCh37	14	50550421	50550421	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR023																					ENST00000305273.1:c.923C>T	p.Thr308Ile	p.T308I	ENST00000305273	NM_001014830.1	308	aCc/aTc	0	
ABCC1	4363		GRCh37	16	16215833	16215833	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR023																					ENST00000399410.3:c.3392G>A	p.Arg1131Lys	p.R1131K	ENST00000399410	NM_004996.3	1131	aGg/aAg	0	
ITGAD	3681		GRCh37	16	31419786	31419786	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR023																					ENST00000389202.2:c.1050G>T	p.Met350Ile	p.M350I	ENST00000389202	NM_005353.2	350	atG/atT	0	
TP53	7157		GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR023																					ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg	0	
CACNA1G	8913		GRCh37	17	48639061	48639061	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR023																					ENST00000359106.5:c.241C>T	p.Pro81Ser	p.P81S	ENST00000359106	NM_018896.4	81	Ccc/Tcc	0	
YIF1B	90522		GRCh37	19	38799901	38799901	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR023																					ENST00000339413.6:c.365G>C	p.Arg122Thr	p.R122T	ENST00000339413	NM_001039673.2	122	aGa/aCa	0	
ZNF546	339327		GRCh37	19	40514391	40514391	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			brca_smc_2018_BR023																					ENST00000347077.4:c.313A>T	p.Lys105Ter	p.K105*	ENST00000347077	NM_178544.3	105	Aag/Tag	0	
GSK3A	2931		GRCh37	19	42736743	42736743	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR023																					ENST00000222330.3:c.1190C>A	p.Ala397Asp	p.A397D	ENST00000222330	NM_019884.2	397	gCc/gAc	0	
ZIM3	114026		GRCh37	19	57646546	57646546	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR023																					ENST00000269834.1:c.1159G>T	p.Gly387Trp	p.G387W	ENST00000269834	NM_052882.1	387	Ggg/Tgg	0	
ZNF530	348327		GRCh37	19	58117816	58117816	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR023																					ENST00000332854.6:c.923C>G	p.Ser308Cys	p.S308C	ENST00000332854	NM_020880.3	308	tCt/tGt	0	
MAVS	57506		GRCh37	20	3838408	3838408	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR023																					ENST00000428216.2:c.244G>T	p.Val82Phe	p.V82F	ENST00000428216	NM_020746.4	82	Gtt/Ttt	0	
MGAT3	4248		GRCh37	22	39883947	39883947	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR023																					ENST00000341184.6:c.595C>G	p.Leu199Val	p.L199V	ENST00000341184	NM_002409.4	199	Ctg/Gtg	0	
ACO2	50		GRCh37	22	41923334	41923334	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR023																					ENST00000216254.4:c.1996G>T	p.Gly666Cys	p.G666C	ENST00000216254	NM_001098.2	666	Ggc/Tgc	0	
EFCAB6	64800		GRCh37	22	44068013	44068013	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR023																					ENST00000262726.7:c.1480G>A	p.Val494Met	p.V494M	ENST00000262726	NM_022785.3	494	Gtg/Atg	0	
LRP8	7804		GRCh37	1	53724002	53724002	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR067																					ENST00000306052.6:c.2198G>A	p.Arg733Lys	p.R733K	ENST00000306052	NM_004631.4	733	aGg/aAg	0	
PIGK	10026		GRCh37	1	77620201	77620201	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR067																					ENST00000370812.3:c.919G>A	p.Val307Ile	p.V307I	ENST00000370812	NM_005482.2	307	Gta/Ata	0	
PSMA5	5686		GRCh37	1	109957973	109957973	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR067																					ENST00000271308.4:c.109G>C	p.Ala37Pro	p.A37P	ENST00000271308	NM_002790.3	37	Gcc/Ccc	0	
GNAI3	2773		GRCh37	1	110116543	110116543	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR067																					ENST00000369851.4:c.187G>A	p.Glu63Lys	p.E63K	ENST00000369851	NM_006496.3	63	Gag/Aag	0	
AP4B1	10717		GRCh37	1	114438589	114438589	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR067																					ENST00000256658.4:c.1582G>A	p.Glu528Lys	p.E528K	ENST00000256658	NM_006594.3	528	Gaa/Aaa	0	
HIPK1	204851		GRCh37	1	114500876	114500876	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR067																					ENST00000369558.1:c.1944C>G	p.Phe648Leu	p.F648L	ENST00000369558		648	ttC/ttG	0	
C2orf16	84226		GRCh37	2	27799812	27799812	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR067																					ENST00000408964.2:c.373C>G	p.Pro125Ala	p.P125A	ENST00000408964	NM_032266.3	125	Cca/Gca	0	
SPAST	6683		GRCh37	2	32288989	32288989	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR067																					ENST00000315285.3:c.89C>G	p.Ala30Gly	p.A30G	ENST00000315285	NM_014946.3	30	gCc/gGc	0	
PTCD3	55037		GRCh37	2	86344193	86344193	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR067																					ENST00000254630.7:c.325G>A	p.Ala109Thr	p.A109T	ENST00000254630	NM_017952.5	109	Gca/Aca	0	
LCT	3938		GRCh37	2	136566802	136566802	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR067																					ENST00000264162.2:c.3115A>G	p.Ile1039Val	p.I1039V	ENST00000264162	NM_002299.2	1039	Att/Gtt	0	
ACKR3	57007		GRCh37	2	237489112	237489112	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR067																					ENST00000272928.3:c.4G>A	p.Asp2Asn	p.D2N	ENST00000272928	NM_020311.2	2	Gat/Aat	0	
BBX	56987		GRCh37	3	107510125	107510125	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR067																					ENST00000325805.8:c.2332G>A	p.Asp778Asn	p.D778N	ENST00000325805		778	Gat/Aat	0	
FNDC3B	64778		GRCh37	3	171830360	171830360	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR067																					ENST00000336824.4:c.91A>C	p.Asn31His	p.N31H	ENST00000336824	NM_001135095.1	31	Aat/Cat	0	
MUC4	4585		GRCh37	3	195490919	195490919	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR067																					ENST00000463781.3:c.14041C>G	p.Pro4681Ala	p.P4681A	ENST00000463781	NM_018406.6	4681	Ccc/Gcc	0	
DNAJC21	134218		GRCh37	5	34937493	34937493	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR067																					ENST00000342382.4:c.501G>C	p.Lys167Asn	p.K167N	ENST00000342382		167	aaG/aaC	0	
TRPC7	57113		GRCh37	5	135601965	135601965	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			brca_smc_2018_BR067																					ENST00000513104.1:c.1288A>T	p.Arg430Ter	p.R430*	ENST00000513104	NM_020389.2	430	Aga/Tga	0	
PCDHA9	9752		GRCh37	5	140229698	140229698	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR067																					ENST00000532602.1:c.1618G>A	p.Ala540Thr	p.A540T	ENST00000532602	NM_031857.1	540	Gcg/Acg	0	
PCDHGB7	56099		GRCh37	5	140798712	140798712	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR067																					ENST00000398594.2:c.1286A>G	p.Lys429Arg	p.K429R	ENST00000398594	NM_018927.3	429	aAg/aGg	0	
ITK	3702		GRCh37	5	156649991	156649991	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR067																					ENST00000422843.3:c.614A>T	p.Glu205Val	p.E205V	ENST00000422843	NM_005546.3	205	gAg/gTg	0	
C7orf31	136895		GRCh37	7	25175881	25175881	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR067																					ENST00000283905.3:c.1483G>C	p.Asp495His	p.D495H	ENST00000283905	NM_138811.3	495	Gac/Cac	0	
GRM3	2913		GRCh37	7	86415953	86415953	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR067																					ENST00000361669.2:c.845G>A	p.Arg282Gln	p.R282Q	ENST00000361669	NM_000840.2	282	cGg/cAg	0	
CCAR2	57805		GRCh37	8	22472438	22472438	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR067																					ENST00000308511.4:c.1129C>A	p.Pro377Thr	p.P377T	ENST00000308511		377	Ccg/Acg	0	
PSAP	5660		GRCh37	10	73591632	73591632	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR067																					ENST00000394936.3:c.220G>T	p.Gly74Cys	p.G74C	ENST00000394936		74	Ggt/Tgt	0	
ZNF215	7762		GRCh37	11	6953777	6953777	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR067																					ENST00000278319.5:c.274G>T	p.Val92Leu	p.V92L	ENST00000278319	NM_013250.2	92	Gtg/Ttg	0	
OR5P3	120066		GRCh37	11	7847188	7847188	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR067																					ENST00000328375.1:c.332A>C	p.Glu111Ala	p.E111A	ENST00000328375	NM_153445.1	111	gAg/gCg	0	
CCDC73	493860		GRCh37	11	32635511	32635511	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR067																					ENST00000335185.5:c.2353C>T	p.His785Tyr	p.H785Y	ENST00000335185	NM_001008391.3	785	Cat/Tat	0	
CD248	57124		GRCh37	11	66084264	66084264	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR067																					ENST00000311330.3:c.235G>C	p.Ala79Pro	p.A79P	ENST00000311330	NM_020404.2	79	Gcc/Ccc	0	
CLEC4D	338339		GRCh37	12	8672912	8672912	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR067																					ENST00000299665.2:c.475C>G	p.Gln159Glu	p.Q159E	ENST00000299665	NM_080387.4	159	Cag/Gag	0	
PRICKLE1	144165		GRCh37	12	42858727	42858727	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR067																					ENST00000345127.3:c.1109C>T	p.Thr370Ile	p.T370I	ENST00000345127	NM_153026.2	370	aCc/aTc	0	
DDN	23109		GRCh37	12	49393010	49393010	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR067																					ENST00000421952.2:c.61G>C	p.Glu21Gln	p.E21Q	ENST00000421952	NM_015086.1	21	Gag/Cag	0	
PRKAG1	5571		GRCh37	12	49399526	49399526	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR067																					ENST00000548065.1:c.168G>T	p.Gln56His	p.Q56H	ENST00000548065		56	caG/caT	0	
C12orf50	160419		GRCh37	12	88383123	88383123	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR067																					ENST00000298699.2:c.618G>T	p.Arg206Ser	p.R206S	ENST00000298699	NM_152589.1	206	agG/agT	0	
DNAH10	196385		GRCh37	12	124366314	124366314	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR067																					ENST00000409039.3:c.8423G>C	p.Gly2808Ala	p.G2808A	ENST00000409039	NM_207437.3	2808	gGg/gCg	0	
TMEM132D	121256		GRCh37	12	129558773	129558773	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR067																					ENST00000422113.2:c.2947T>G	p.Ser983Ala	p.S983A	ENST00000422113	NM_133448.2	983	Tcg/Gcg	0	
ATP12A	479		GRCh37	13	25266767	25266767	+	splice_donor_variant	Splice_Site	SNP	T	T	A			brca_smc_2018_BR067																					ENST00000381946.3:c.1267+2T>A		p.X423_splice	ENST00000381946		423		0	
CLYBL	171425		GRCh37	13	100511156	100511156	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR067																					ENST00000339105.4:c.291T>G	p.Ile97Met	p.I97M	ENST00000339105		97	atT/atG	0	
COL4A1	1282		GRCh37	13	110859050	110859050	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR067																					ENST00000375820.4:c.820G>C	p.Val274Leu	p.V274L	ENST00000375820	NM_001845.4	274	Gtc/Ctc	0	
NFKBIA	4792		GRCh37	14	35872928	35872928	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR067																					ENST00000216797.5:c.304G>A	p.Ala102Thr	p.A102T	ENST00000216797	NM_020529.2	102	Gcc/Acc	0	
WDR72	256764		GRCh37	15	54025315	54025315	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR067																					ENST00000360509.5:c.32G>T	p.Trp11Leu	p.W11L	ENST00000360509		11	tGg/tTg	0	
DNAJA4	55466		GRCh37	15	78562960	78562960	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR067																					ENST00000343789.3:c.254C>A	p.Pro85His	p.P85H	ENST00000343789		85	cCc/cAc	0	
TMC3	342125		GRCh37	15	81631846	81631846	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			brca_smc_2018_BR067																					ENST00000359440.5:c.1845-1G>T		p.X615_splice	ENST00000359440	NM_001080532.1	615		0	
CRTC3	64784		GRCh37	15	91181742	91181742	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR067																					ENST00000268184.6:c.1331C>G	p.Pro444Arg	p.P444R	ENST00000268184		444	cCg/cGg	0	
KCTD5	54442		GRCh37	16	2752402	2752402	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR067																					ENST00000301738.4:c.598G>T	p.Glu200Ter	p.E200*	ENST00000301738	NM_018992.3	200	Gag/Tag	0	
OR1F1	4992		GRCh37	16	3254680	3254680	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR067																					ENST00000304646.2:c.434T>A	p.Val145Asp	p.V145D	ENST00000304646	NM_012360.1	145	gTt/gAt	0	
NOL3	8996		GRCh37	16	67208309	67208309	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR067																					ENST00000268605.7:c.237T>G	p.Cys79Trp	p.C79W	ENST00000268605	NM_001185057.2	79	tgT/tgG	0	
C17orf103			GRCh37	17	21147527	21147527	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR067																					ENST00000399011.2:c.114C>G	p.Asp38Glu	p.D38E	ENST00000399011	NM_152914.2	38	gaC/gaG	0	
STAT5B	6777		GRCh37	17	40368082	40368082	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR067																					ENST00000293328.3:c.1423G>C	p.Asp475His	p.D475H	ENST00000293328	NM_012448.3	475	Gac/Cac	0	
ETV4	2118		GRCh37	17	41606063	41606063	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR067																					ENST00000319349.5:c.1279C>G	p.Leu427Val	p.L427V	ENST00000319349	NM_001079675.2	427	Ctc/Gtc	0	
CCDC40	55036		GRCh37	17	78022396	78022396	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR067																					ENST00000397545.4:c.691G>A	p.Val231Met	p.V231M	ENST00000397545	NM_017950.3	231	Gtg/Atg	0	
LRRC30	339291		GRCh37	18	7231361	7231361	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR067																					ENST00000383467.2:c.225A>T	p.Lys75Asn	p.K75N	ENST00000383467	NM_001105581.1	75	aaA/aaT	0	
WIZ	58525		GRCh37	19	15535642	15535642	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR067																					ENST00000263381.7:c.1811C>G	p.Pro604Arg	p.P604R	ENST00000263381	NM_021241.2	604	cCc/cGc	0	
MAP1S	55201		GRCh37	19	17836885	17836885	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR067																					ENST00000324096.4:c.692C>A	p.Thr231Asn	p.T231N	ENST00000324096	NM_018174.4	231	aCc/aAc	0	
SCAF1	58506		GRCh37	19	50161573	50161573	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR067																					ENST00000360565.3:c.3856G>A	p.Asp1286Asn	p.D1286N	ENST00000360565	NM_021228.2	1286	Gac/Aac	0	
IL4I1	259307		GRCh37	19	50397706	50397706	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR067																					ENST00000391826.2:c.386A>G	p.Gln129Arg	p.Q129R	ENST00000391826	NM_152899.1	129	cAg/cGg	0	
SSC5D	284297		GRCh37	19	56029904	56029904	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR067																					ENST00000389623.6:c.4261A>G	p.Thr1421Ala	p.T1421A	ENST00000389623	NM_001144950.1	1421	Acc/Gcc	0	
PLCB1	23236		GRCh37	20	8630070	8630070	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR067																					ENST00000338037.6:c.568G>C	p.Glu190Gln	p.E190Q	ENST00000338037	NM_015192.3	190	Gag/Cag	0	
OVOL2	58495		GRCh37	20	18037464	18037464	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR067																					ENST00000278780.6:c.158G>A	p.Ser53Asn	p.S53N	ENST00000278780	NM_021220.2	53	aGc/aAc	0	
NRIP1	8204		GRCh37	21	16338377	16338377	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR067																					ENST00000318948.4:c.2137C>G	p.Leu713Val	p.L713V	ENST00000318948	NM_003489.3	713	Ctc/Gtc	0	
XG	7499		GRCh37	X	2724784	2724784	+	intron_variant	Intron	SNP	A	A	T			brca_smc_2018_BR067																					ENST00000381174.5:c.374-1442A>T		p.*125*	ENST00000381174				0	
CDKL5	6792		GRCh37	X	18598032	18598032	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR067																					ENST00000379989.3:c.347T>C	p.Ile116Thr	p.I116T	ENST00000379989	NM_001037343.1	116	aTc/aCc	0	
GJB1	2705		GRCh37	X	70444405	70444405	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR067																					ENST00000361726.6:c.848G>T	p.Cys283Phe	p.C283F	ENST00000361726	NM_000166.5	283	tGc/tTc	0	
TCEAL3	85012		GRCh37	X	102864196	102864196	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR067																					ENST00000243286.3:c.204G>T	p.Lys68Asn	p.K68N	ENST00000243286	NM_001006933.1	68	aaG/aaT	0	
MAGEC1	9947		GRCh37	X	140993393	140993393	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR067																					ENST00000285879.4:c.203A>G	p.Gln68Arg	p.Q68R	ENST00000285879	NM_005462.4	68	cAg/cGg	0	
MAGEA8	4107		GRCh37	X	149013104	149013104	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR067																					ENST00000286482.1:c.58G>T	p.Gly20Ter	p.G20*	ENST00000286482	NM_005364.4	20	Gga/Tga	0	
IL24	11009		GRCh37	1	207073668	207073668	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR170																					ENST00000294984.2:c.269G>C	p.Arg90Pro	p.R90P	ENST00000294984	NM_006850.3	90	cGg/cCg	0	
TTC29	83894		GRCh37	4	147724681	147724681	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR170																					ENST00000325106.4:c.1258G>A	p.Asp420Asn	p.D420N	ENST00000325106	NM_031956.2	420	Gat/Aat	0	
FBXW7	55294		GRCh37	4	153244260	153244260	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR170																					ENST00000281708.4:c.1897A>C	p.Asn633His	p.N633H	ENST00000281708	NM_033632.3	633	Aac/Cac	0	
PHF2	5253		GRCh37	9	96437283	96437283	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR170																					ENST00000359246.4:c.2701G>A	p.Asp901Asn	p.D901N	ENST00000359246	NM_005392.3	901	Gac/Aac	0	
RTN4RL2	349667		GRCh37	11	57244127	57244127	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR170																					ENST00000335099.3:c.1006G>A	p.Glu336Lys	p.E336K	ENST00000335099	NM_178570.2	336	Gag/Aag	0	
TMEM132D	121256		GRCh37	12	130184667	130184667	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR170																					ENST00000422113.2:c.656C>T	p.Pro219Leu	p.P219L	ENST00000422113	NM_133448.2	219	cCg/cTg	0	
EP400	57634		GRCh37	12	132466730	132466730	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR170																					ENST00000389561.2:c.1636A>T	p.Asn546Tyr	p.N546Y	ENST00000389561	NM_015409.4	546	Aac/Tac	0	
ACTC1	70		GRCh37	15	35085734	35085734	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR170																					ENST00000290378.4:c.166G>A	p.Val56Ile	p.V56I	ENST00000290378	NM_005159.4	56	Gta/Ata	0	
ACAN	176		GRCh37	15	89402583	89402583	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR170																					ENST00000439576.2:c.6767C>T	p.Ser2256Phe	p.S2256F	ENST00000439576	NM_013227.3	2256	tCc/tTc	0	
CEACAM4	1089		GRCh37	19	42132176	42132176	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR170																					ENST00000221954.2:c.223G>C	p.Gly75Arg	p.G75R	ENST00000221954	NM_001817.2	75	Ggg/Cgg	0	
SPTA1	6708		GRCh37	1	158596751	158596751	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR112																					ENST00000368147.4:c.5711A>T	p.Glu1904Val	p.E1904V	ENST00000368147	NM_003126.2	1904	gAg/gTg	0	
ZNF648	127665		GRCh37	1	182025710	182025710	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR112																					ENST00000339948.3:c.1436C>T	p.Thr479Met	p.T479M	ENST00000339948	NM_001009992.1	479	aCg/aTg	0	
APOB	338		GRCh37	2	21228878	21228878	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR112																					ENST00000233242.1:c.10862C>G	p.Ala3621Gly	p.A3621G	ENST00000233242	NM_000384.2	3621	gCc/gGc	0	
CCDC150	284992		GRCh37	2	197521574	197521574	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR112																					ENST00000389175.4:c.394A>C	p.Thr132Pro	p.T132P	ENST00000389175	NM_001080539.1	132	Aca/Cca	0	
UNC80	285175		GRCh37	2	210846989	210846989	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR112																					ENST00000439458.1:c.9007G>A	p.Val3003Ile	p.V3003I	ENST00000439458	NM_032504.1	3003	Gtc/Atc	0	
ALAS1	211		GRCh37	3	52242227	52242227	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR112																					ENST00000310271.2:c.1294G>C	p.Val432Leu	p.V432L	ENST00000310271	NM_199166.2	432	Gtc/Ctc	0	
PIK3CA	5290		GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR112																					ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag	0	
EHHADH	1962		GRCh37	3	184911108	184911108	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR112																					ENST00000231887.3:c.1078G>C	p.Gly360Arg	p.G360R	ENST00000231887	NM_001166415.1	360	Gga/Cga	0	
RGS12	6002		GRCh37	4	3318555	3318555	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR112																					ENST00000336727.3:c.658G>C	p.Ala220Pro	p.A220P	ENST00000336727	NM_002926.3	220	Gca/Cca	0	
ENAM	10117		GRCh37	4	71509862	71509862	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR112																					ENST00000396073.3:c.2719A>G	p.Ser907Gly	p.S907G	ENST00000396073	NM_031889.2	907	Agt/Ggt	0	
VARS	7407		GRCh37	6	31753071	31753071	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR112																					ENST00000375663.3:c.1299G>T	p.Lys433Asn	p.K433N	ENST00000375663	NM_006295.2	433	aaG/aaT	0	
FAM135A	57579		GRCh37	6	71236012	71236012	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR112																					ENST00000370479.3:c.2586T>G	p.Ser862Arg	p.S862R	ENST00000370479		862	agT/agG	0	
PEX1	5189		GRCh37	7	92135608	92135608	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR112																					ENST00000248633.4:c.1854C>A	p.Asp618Glu	p.D618E	ENST00000248633	NM_000466.2	618	gaC/gaA	0	
BICD2	23299		GRCh37	9	95481632	95481632	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR112																					ENST00000375512.3:c.1295C>T	p.Pro432Leu	p.P432L	ENST00000375512	NM_015250.3	432	cCt/cTt	0	
KIAA1731			GRCh37	11	93432513	93432513	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR112																					ENST00000325212.6:c.4435G>C	p.Glu1479Gln	p.E1479Q	ENST00000325212		1479	Gaa/Caa	0	
CNTN1	1272		GRCh37	12	41410662	41410662	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR112																					ENST00000347616.1:c.2363A>T	p.Asn788Ile	p.N788I	ENST00000347616		788	aAc/aTc	0	
DNAH10	196385		GRCh37	12	124354925	124354925	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR112																					ENST00000409039.3:c.7178C>A	p.Thr2393Asn	p.T2393N	ENST00000409039	NM_207437.3	2393	aCc/aAc	0	
CARS2	79587		GRCh37	13	111340094	111340094	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR112																					ENST00000257347.4:c.545G>T	p.Arg182Leu	p.R182L	ENST00000257347	NM_024537.2	182	cGt/cTt	0	
NUMB	8650		GRCh37	14	73743681	73743681	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR112																					ENST00000355058.3:c.1561G>T	p.Ala521Ser	p.A521S	ENST00000355058		521	Gcc/Tcc	0	
RP11-463C8.4			GRCh37	14	77685156	77685156	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR112																					ENST00000557752.1:c.149G>A	p.Gly50Glu	p.G50E	ENST00000557752		50	gGa/gAa	0	
IGHM	3507		GRCh37	14	106321875	106321875	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR112																					ENST00000390559.2:c.359G>A	p.Arg120His	p.R120H	ENST00000390559		120	cGc/cAc	0	
STARD9	57519		GRCh37	15	42986822	42986822	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR112																					ENST00000290607.7:c.12861C>G	p.Ser4287Arg	p.S4287R	ENST00000290607	NM_020759.2	4287	agC/agG	0	
TMEM132E	124842		GRCh37	17	32956058	32956058	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR112																					ENST00000321639.5:c.903G>T	p.Leu301Phe	p.L301F	ENST00000321639	NM_207313.1	301	ttG/ttT	0	
NME1	4830		GRCh37	17	49237378	49237378	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR112																					ENST00000393196.3:c.164T>A	p.Leu55Gln	p.L55Q	ENST00000393196	NM_000269.2	55	cTg/cAg	0	
HRH4	59340		GRCh37	18	22056778	22056778	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR112																					ENST00000256906.4:c.425T>G	p.Leu142Arg	p.L142R	ENST00000256906	NM_021624.3	142	cTg/cGg	0	
DMRTC2	63946		GRCh37	19	42353325	42353325	+	splice_donor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BR112																					ENST00000269945.3:c.755+1G>A		p.X252_splice	ENST00000269945	NM_001040283.1	252		0	
DLGAP4	22839		GRCh37	20	35060283	35060283	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR112																					ENST00000339266.5:c.163G>C	p.Asp55His	p.D55H	ENST00000339266		55	Gat/Cat	0	
DOPEY2			GRCh37	21	37602788	37602788	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR112																					ENST00000399151.3:c.1706C>G	p.Thr569Arg	p.T569R	ENST00000399151	NM_005128.2	569	aCa/aGa	0	
NSDHL	50814		GRCh37	X	152034453	152034453	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR112																					ENST00000370274.3:c.634G>T	p.Val212Leu	p.V212L	ENST00000370274	NM_015922.2	212	Gta/Tta	0	
CLSPN	63967		GRCh37	1	36211093	36211093	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR020																					ENST00000318121.3:c.2925A>C	p.Glu975Asp	p.E975D	ENST00000318121	NM_022111.3	975	gaA/gaC	0	
APOA2	336		GRCh37	1	161192237	161192237	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR020																					ENST00000367990.3:c.261G>C	p.Leu87Phe	p.L87F	ENST00000367990	NM_001643.1	87	ttG/ttC	0	
ZNF117	51351		GRCh37	7	64438814	64438814	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR020																					ENST00000282869.6:c.1135C>T	p.His379Tyr	p.H379Y	ENST00000282869	NM_015852.3	379	Cat/Tat	0	
ADAMTS15	170689		GRCh37	11	130341268	130341268	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR020																					ENST00000299164.2:c.2068A>G	p.Thr690Ala	p.T690A	ENST00000299164	NM_139055.2	690	Acc/Gcc	0	
AKT1	207		GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR020																					ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag	0	
GOLGA6L2	283685		GRCh37	15	23685009	23685009	+	synonymous_variant	Silent	SNP	T	T	A			brca_smc_2018_BR020																					ENST00000567107.1:c.2613A>T	p.Gly871=	p.G871=	ENST00000567107		871	ggA/ggT	0	
HIF3A	64344		GRCh37	19	46823773	46823773	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR020																					ENST00000377670.4:c.1099G>C	p.Gly367Arg	p.G367R	ENST00000377670	NM_152795.3	367	Ggc/Cgc	0	
JPH2	57158		GRCh37	20	42788652	42788652	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR020																					ENST00000372980.3:c.775G>A	p.Asp259Asn	p.D259N	ENST00000372980	NM_020433.4	259	Gac/Aac	0	
TEX11	56159		GRCh37	X	70053385	70053385	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR020																					ENST00000344304.3:c.629T>C	p.Met210Thr	p.M210T	ENST00000344304		210	aTg/aCg	0	
IDH3G	3421		GRCh37	X	153052526	153052526	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR020																					ENST00000217901.5:c.757G>A	p.Val253Met	p.V253M	ENST00000217901	NM_004135.3	253	Gtg/Atg	0	
EYA3	2140		GRCh37	1	28374933	28374933	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR085																					ENST00000373871.3:c.38A>C	p.Lys13Thr	p.K13T	ENST00000373871		13	aAa/aCa	0	
GBP1	2633		GRCh37	1	89521856	89521856	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR085																					ENST00000370473.4:c.1211C>T	p.Ser404Leu	p.S404L	ENST00000370473	NM_002053.2	404	tCa/tTa	0	
RGSL1	353299		GRCh37	1	182443399	182443399	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR085																					ENST00000294854.8:c.1153C>T	p.Arg385Trp	p.R385W	ENST00000294854	NM_001137669.1	385	Cgg/Tgg	0	
TGFB2	7042		GRCh37	1	218610821	218610821	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR085																					ENST00000366930.4:c.1069G>C	p.Asp357His	p.D357H	ENST00000366930	NM_003238.3	357	Gac/Cac	0	
ZDBF2	57683		GRCh37	2	207173771	207173771	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR085																					ENST00000374423.3:c.4519C>A	p.Gln1507Lys	p.Q1507K	ENST00000374423	NM_020923.1	1507	Caa/Aaa	0	
TRIM59	286827		GRCh37	3	160156773	160156773	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR085																					ENST00000309784.4:c.199C>A	p.Pro67Thr	p.P67T	ENST00000309784	NM_173084.2	67	Cca/Aca	0	
GABRA4	2557		GRCh37	4	46995362	46995362	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR085																					ENST00000264318.3:c.80C>T	p.Ala27Val	p.A27V	ENST00000264318	NM_000809.3	27	gCg/gTg	0	
MUC7	4589		GRCh37	4	71347240	71347240	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR085																					ENST00000304887.5:c.779T>C	p.Val260Ala	p.V260A	ENST00000304887	NM_152291.2	260	gTc/gCc	0	
MEPE	56955		GRCh37	4	88766906	88766906	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR085																					ENST00000361056.3:c.886C>G	p.Leu296Val	p.L296V	ENST00000361056	NM_020203.3	296	Ctt/Gtt	0	
AGA	175		GRCh37	4	178354450	178354450	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR085																					ENST00000264595.2:c.858C>G	p.Cys286Trp	p.C286W	ENST00000264595	NM_001171988.1	286	tgC/tgG	0	
MICAL1	64780		GRCh37	6	109773741	109773741	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR085																					ENST00000358807.3:c.649G>A	p.Ala217Thr	p.A217T	ENST00000358807	NM_022765.3	217	Gct/Act	0	
CDK13	8621		GRCh37	7	40027281	40027281	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR085																					ENST00000181839.4:c.1295G>C	p.Arg432Thr	p.R432T	ENST00000181839	NM_031267.3	432	aGa/aCa	0	
OR1L8	138881		GRCh37	9	125329979	125329979	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR085																					ENST00000304865.2:c.778T>C	p.Tyr260His	p.Y260H	ENST00000304865	NM_001004454.1	260	Tat/Cat	0	
AKR1E2	83592		GRCh37	10	4872942	4872942	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR085																					ENST00000298375.7:c.115T>G	p.Phe39Val	p.F39V	ENST00000298375	NM_001040177.2	39	Ttt/Gtt	0	
SGPL1	8879		GRCh37	10	72631600	72631600	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR085																					ENST00000373202.3:c.916G>A	p.Val306Ile	p.V306I	ENST00000373202	NM_003901.3	306	Gtc/Atc	0	
DNHD1	144132		GRCh37	11	6550108	6550108	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR085																					ENST00000254579.6:c.2104G>A	p.Gly702Ser	p.G702S	ENST00000254579	NM_144666.2	702	Ggc/Agc	0	
TCHP	84260		GRCh37	12	110342568	110342568	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR085																					ENST00000312777.5:c.426C>G	p.His142Gln	p.H142Q	ENST00000312777	NM_032300.4	142	caC/caG	0	
TMC5	79838		GRCh37	16	19475261	19475261	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR085																					ENST00000396229.2:c.1400A>G	p.Asn467Ser	p.N467S	ENST00000396229	NM_001105248.1	467	aAc/aGc	0	
TP53	7157		GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR085																					ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc	0	
C20orf195			GRCh37	20	62187527	62187527	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR085																					ENST00000370097.1:c.511G>A	p.Asp171Asn	p.D171N	ENST00000370097		171	Gac/Aac	0	
DMD	1756		GRCh37	X	31341742	31341742	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR085																					ENST00000357033.4:c.9197C>T	p.Ser3066Leu	p.S3066L	ENST00000357033	NM_004007.2	3066	tCg/tTg	0	
MEGF6	1953		GRCh37	1	3413552	3413552	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR071																					ENST00000356575.4:c.3613C>G	p.Arg1205Gly	p.R1205G	ENST00000356575	NM_001409.3	1205	Cga/Gga	0	
UBQLN4	56893		GRCh37	1	156012613	156012613	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR071																					ENST00000368309.3:c.1218G>A	p.Met406Ile	p.M406I	ENST00000368309	NM_020131.3	406	atG/atA	0	
DSTYK	25778		GRCh37	1	205156661	205156661	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR071																					ENST00000367162.3:c.539A>G	p.His180Arg	p.H180R	ENST00000367162	NM_015375.2	180	cAt/cGt	0	
PM20D1	148811		GRCh37	1	205809451	205809451	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR071																					ENST00000367136.4:c.1045T>A	p.Phe349Ile	p.F349I	ENST00000367136	NM_152491.4	349	Ttc/Atc	0	
ACTG2	72		GRCh37	2	74128539	74128539	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR071																					ENST00000345517.3:c.101C>A	p.Ser34Tyr	p.S34Y	ENST00000345517	NM_001615.3	34	tCc/tAc	0	
AMMECR1L	83607		GRCh37	2	128628456	128628456	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR071																					ENST00000272647.5:c.565C>A	p.Pro189Thr	p.P189T	ENST00000272647	NM_001199140.1	189	Cct/Act	0	
MYO3B	140469		GRCh37	2	171258123	171258123	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR071																					ENST00000408978.4:c.2051C>A	p.Ser684Tyr	p.S684Y	ENST00000408978	NM_138995.4	684	tCc/tAc	0	
NBEAL1	65065		GRCh37	2	204016276	204016276	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR071																					ENST00000449802.1:c.5464A>C	p.Thr1822Pro	p.T1822P	ENST00000449802	NM_001114132.1	1822	Acc/Ccc	0	
ATP2B2	491		GRCh37	3	10382215	10382215	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR071																					ENST00000352432.4:c.3091A>G	p.Ile1031Val	p.I1031V	ENST00000352432		1031	Atc/Gtc	0	
PVRL3			GRCh37	3	110837628	110837628	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR071																					ENST00000485303.1:c.628C>G	p.Leu210Val	p.L210V	ENST00000485303	NM_001243286.1	210	Ctt/Gtt	0	
PVRL3			GRCh37	3	110837783	110837783	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR071																					ENST00000485303.1:c.783C>G	p.Phe261Leu	p.F261L	ENST00000485303	NM_001243286.1	261	ttC/ttG	0	
RTP1	132112		GRCh37	3	186915348	186915348	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR071																					ENST00000312295.4:c.45C>A	p.His15Gln	p.H15Q	ENST00000312295	NM_153708.2	15	caC/caA	0	
DOK7	285489		GRCh37	4	3487368	3487368	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR071																					ENST00000340083.5:c.635T>A	p.Leu212Gln	p.L212Q	ENST00000340083	NM_173660.4	212	cTg/cAg	0	
ALPK1	80216		GRCh37	4	113352136	113352136	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR071																					ENST00000177648.9:c.1433A>G	p.Lys478Arg	p.K478R	ENST00000177648		478	aAa/aGa	0	
ERAP2	64167		GRCh37	5	96232546	96232546	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR071																					ENST00000437043.3:c.1482C>G	p.Asp494Glu	p.D494E	ENST00000437043	NM_001130140.1	494	gaC/gaG	0	
NKAPL	222698		GRCh37	6	28227380	28227380	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR071																					ENST00000343684.3:c.231A>C	p.Arg77Ser	p.R77S	ENST00000343684	NM_001007531.2	77	agA/agC	0	
SLC39A7	7922		GRCh37	6	33169606	33169606	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR071																					ENST00000374675.3:c.496C>T	p.Arg166Cys	p.R166C	ENST00000374675	NM_001077516.1	166	Cgc/Tgc	0	
PHF3	23469		GRCh37	6	64421485	64421485	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR071																					ENST00000262043.3:c.4001T>A	p.Leu1334His	p.L1334H	ENST00000262043		1334	cTt/cAt	0	
PPIL6	285755		GRCh37	6	109724278	109724278	+	intron_variant	Intron	SNP	C	C	A			brca_smc_2018_BR071																					ENST00000521072.2:c.689-2905G>T		p.*230*	ENST00000521072	NM_173672.4			0	
MCM9	254394		GRCh37	6	119136530	119136530	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR071																					ENST00000316316.6:c.2889C>G	p.Asp963Glu	p.D963E	ENST00000316316	NM_017696.2	963	gaC/gaG	0	
PRPS1L1	221823		GRCh37	7	18066856	18066856	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR071																					ENST00000506618.2:c.550C>G	p.Gln184Glu	p.Q184E	ENST00000506618	NM_175886.2	184	Cag/Gag	0	
SPDYE3	441272		GRCh37	7	99913438	99913438	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR071																					ENST00000332397.6:c.1232G>C	p.Trp411Ser	p.W411S	ENST00000332397	NM_001004351.4	411	tGg/tCg	0	
RIPK2	8767		GRCh37	8	90796357	90796357	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR071																					ENST00000220751.4:c.1019G>C	p.Gly340Ala	p.G340A	ENST00000220751	NM_003821.5	340	gGt/gCt	0	
CSMD3	114788		GRCh37	8	113304796	113304796	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR071																					ENST00000297405.5:c.8758C>A	p.Gln2920Lys	p.Q2920K	ENST00000297405	NM_198123.1	2920	Cag/Aag	0	
UNC13B	10497		GRCh37	9	35399703	35399703	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR071																					ENST00000378495.3:c.4066G>T	p.Asp1356Tyr	p.D1356Y	ENST00000378495	NM_006377.3	1356	Gac/Tac	0	
GTF3C5	9328		GRCh37	9	135917565	135917565	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR071																					ENST00000372097.5:c.245G>A	p.Ser82Asn	p.S82N	ENST00000372097	NM_012087.3	82	aGc/aAc	0	
TTC18			GRCh37	10	75072384	75072384	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR071																					ENST00000310715.3:c.1140C>G	p.Ser380Arg	p.S380R	ENST00000310715	NM_145170.3	380	agC/agG	0	
C11orf89			GRCh37	11	1911465	1911465	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR071																					ENST00000391480.1:c.350C>A	p.Thr117Asn	p.T117N	ENST00000391480		117	aCc/aAc	0	
NLRP14	338323		GRCh37	11	7067922	7067922	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR071																					ENST00000299481.4:c.1982G>C	p.Cys661Ser	p.C661S	ENST00000299481	NM_176822.3	661	tGt/tCt	0	
FMNL3	91010		GRCh37	12	50041579	50041579	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR071																					ENST00000335154.5:c.2685C>A	p.Tyr895Ter	p.Y895*	ENST00000335154	NM_175736.4	895	taC/taA	0	
RBMS2	5939		GRCh37	12	56975633	56975633	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR071																					ENST00000262031.5:c.749C>G	p.Thr250Ser	p.T250S	ENST00000262031	NM_002898.3	250	aCc/aGc	0	
SYT1	6857		GRCh37	12	79693176	79693176	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR071																					ENST00000261205.4:c.655G>A	p.Glu219Lys	p.E219K	ENST00000261205	NM_005639.2	219	Gaa/Aaa	0	
ZNF891	101060200		GRCh37	12	133697565	133697565	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR071																					ENST00000537226.1:c.940A>C	p.Thr314Pro	p.T314P	ENST00000537226	NM_001277291.1	314	Act/Cct	0	
TRPC4	7223		GRCh37	13	38266135	38266135	+	splice_donor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BR071																					ENST00000379705.3:c.1234+1G>C		p.X412_splice	ENST00000379705		412		0	
OR10G3	26533		GRCh37	14	22038710	22038710	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR071																					ENST00000303532.1:c.166C>A	p.His56Asn	p.H56N	ENST00000303532	NM_001005465.1	56	Cat/Aat	0	
IGHM	3507		GRCh37	14	106321226	106321226	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR071																					ENST00000390559.2:c.763G>T	p.Val255Leu	p.V255L	ENST00000390559		255	Gtg/Ttg	0	
JPH3	57338		GRCh37	16	87678283	87678283	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR071																					ENST00000284262.2:c.802G>A	p.Glu268Lys	p.E268K	ENST00000284262	NM_020655.3	268	Gag/Aag	0	
PELP1	27043		GRCh37	17	4575439	4575439	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR071																					ENST00000574876.1:c.2847G>T	p.Glu949Asp	p.E949D	ENST00000574876		949	gaG/gaT	0	
ARRB2	409		GRCh37	17	4621262	4621262	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR071																					ENST00000269260.2:c.565C>G	p.Arg189Gly	p.R189G	ENST00000269260	NM_001257328.1	189	Cgc/Ggc	0	
TP53	7157		GRCh37	17	7578254	7578254	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR071																					ENST00000269305.4:c.595G>T	p.Gly199Ter	p.G199*	ENST00000269305	NM_001126112.2	199	Gga/Tga	0	
GJC1	10052		GRCh37	17	42882854	42882854	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR071																					ENST00000330514.4:c.332C>T	p.Ala111Val	p.A111V	ENST00000330514		111	gCa/gTa	0	
HGS	9146		GRCh37	17	79658575	79658575	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR071																					ENST00000329138.4:c.636T>G	p.Cys212Trp	p.C212W	ENST00000329138	NM_004712.4	212	tgT/tgG	0	
DCC	1630		GRCh37	18	50918216	50918216	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR071																					ENST00000442544.2:c.2647G>A	p.Val883Ile	p.V883I	ENST00000442544	NM_005215.3	883	Gtc/Atc	0	
PEPD	5184		GRCh37	19	33882299	33882299	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR071																					ENST00000244137.7:c.1054G>A	p.Asp352Asn	p.D352N	ENST00000244137	NM_000285.3	352	Gac/Aac	0	
ZNF607	84775		GRCh37	19	38200681	38200681	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR071																					ENST00000355202.4:c.52C>G	p.Gln18Glu	p.Q18E	ENST00000355202	NM_032689.4	18	Cag/Gag	0	
ERCC2	2068		GRCh37	19	45867164	45867164	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR071																					ENST00000391945.4:c.955G>A	p.Val319Met	p.V319M	ENST00000391945	NM_000400.3	319	Gtg/Atg	0	
TGM6	343641		GRCh37	20	2411546	2411546	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR071																					ENST00000202625.2:c.1840G>T	p.Gly614Cys	p.G614C	ENST00000202625	NM_198994.2	614	Ggc/Tgc	0	
ZNF831	128611		GRCh37	20	57829784	57829784	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR071																					ENST00000371030.2:c.5020G>A	p.Val1674Ile	p.V1674I	ENST00000371030	NM_178457.2	1674	Gtt/Att	0	
CDH26	60437		GRCh37	20	58547155	58547155	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR071																					ENST00000348616.4:c.370C>G	p.Arg124Gly	p.R124G	ENST00000348616	NM_177980.2	124	Cga/Gga	0	
DIP2A	23181		GRCh37	21	47971754	47971754	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR071																					ENST00000417564.2:c.2967C>A	p.Asp989Glu	p.D989E	ENST00000417564		989	gaC/gaA	0	
KLHL4	56062		GRCh37	X	86869526	86869526	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR071																					ENST00000373119.4:c.680G>A	p.Gly227Glu	p.G227E	ENST00000373119	NM_019117.4	227	gGa/gAa	0	
PLS3	5358		GRCh37	X	114874744	114874744	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR071																					ENST00000355899.3:c.916C>A	p.Leu306Ile	p.L306I	ENST00000355899	NM_005032.5	306	Ctc/Atc	0	
NPHP4	261734		GRCh37	1	5933358	5933358	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR041																					ENST00000378156.4:c.3269C>A	p.Ala1090Asp	p.A1090D	ENST00000378156	NM_015102.3	1090	gCc/gAc	0	
UBR4	23352		GRCh37	1	19475095	19475095	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR041																					ENST00000375254.3:c.7456C>A	p.Leu2486Met	p.L2486M	ENST00000375254	NM_020765.2	2486	Ctg/Atg	0	
ZNF691	51058		GRCh37	1	43316944	43316944	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR041																					ENST00000397044.3:c.408C>G	p.Ile136Met	p.I136M	ENST00000397044		136	atC/atG	0	
CHD1L	9557		GRCh37	1	146767183	146767183	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR041																					ENST00000369258.4:c.2687T>C	p.Val896Ala	p.V896A	ENST00000369258	NM_001256336.1	896	gTg/gCg	0	
OTUD7B	56957		GRCh37	1	149916124	149916124	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR041																					ENST00000369135.4:c.2164G>A	p.Gly722Arg	p.G722R	ENST00000369135	NM_020205.3	722	Ggg/Agg	0	
ITPR1	3708		GRCh37	3	4683853	4683853	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR041																					ENST00000354582.6:c.443G>C	p.Arg148Thr	p.R148T	ENST00000354582		148	aGa/aCa	0	
KALRN	8997		GRCh37	3	124044826	124044826	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BR041																					ENST00000240874.3:c.1087-1G>A		p.X363_splice	ENST00000240874	NM_003947.4	363		0	
RASA2	5922		GRCh37	3	141205962	141205962	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR041																					ENST00000286364.3:c.37T>C	p.Ser13Pro	p.S13P	ENST00000286364		13	Tcc/Ccc	0	
PIK3CA	5290		GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR041																					ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag	0	
HES1	3280		GRCh37	3	193855539	193855539	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR041																					ENST00000232424.3:c.360G>C	p.Glu120Asp	p.E120D	ENST00000232424	NM_005524.3	120	gaG/gaC	0	
ACAP2	23527		GRCh37	3	195027328	195027328	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR041																					ENST00000326793.6:c.1028C>T	p.Ala343Val	p.A343V	ENST00000326793	NM_012287.5	343	gCa/gTa	0	
WDR17	116966		GRCh37	4	177058703	177058703	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR041																					ENST00000280190.4:c.1372C>T	p.Arg458Ter	p.R458*	ENST00000280190		458	Cga/Tga	0	
RAD17	5884		GRCh37	5	68689281	68689281	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR041																					ENST00000380774.3:c.1409C>T	p.Ala470Val	p.A470V	ENST00000380774	NM_133339.2	470	gCc/gTc	0	
FBXO38	81545		GRCh37	5	147806950	147806950	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR041																					ENST00000340253.5:c.2093A>C	p.Lys698Thr	p.K698T	ENST00000340253	NM_030793.4	698	aAg/aCg	0	
PRKDC	5591		GRCh37	8	48773478	48773478	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR041																					ENST00000314191.2:c.6037G>C	p.Ala2013Pro	p.A2013P	ENST00000314191	NM_006904.6	2013	Gca/Cca	0	
OASL	8638		GRCh37	12	121471469	121471469	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR041																					ENST00000257570.5:c.276C>A	p.His92Gln	p.H92Q	ENST00000257570	NM_003733.3	92	caC/caA	0	
KLF12	11278		GRCh37	13	74420210	74420210	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR041																					ENST00000377669.2:c.424G>T	p.Val142Leu	p.V142L	ENST00000377669	NM_007249.4	142	Gta/Tta	0	
TP53	7157		GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR041																					ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc	0	
PARVB	29780		GRCh37	22	44515013	44515013	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR041																					ENST00000338758.7:c.369G>T	p.Lys123Asn	p.K123N	ENST00000338758	NM_013327.4	123	aaG/aaT	0	
CASK	8573		GRCh37	X	41413113	41413113	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR041																					ENST00000378163.1:c.1898G>T	p.Cys633Phe	p.C633F	ENST00000378163		633	tGt/tTt	0	
TAF7L	54457		GRCh37	X	100531436	100531436	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR041																					ENST00000372907.3:c.1030G>T	p.Asp344Tyr	p.D344Y	ENST00000372907	NM_024885.3	344	Gat/Tat	0	
COL4A6	1288		GRCh37	X	107434698	107434698	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR041																					ENST00000372216.4:c.1249C>T	p.Arg417Cys	p.R417C	ENST00000372216	NM_001847.2	417	Cgt/Tgt	0	
ZNF75D	7626		GRCh37	X	134427872	134427872	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR041																					ENST00000370766.3:c.195G>C	p.Glu65Asp	p.E65D	ENST00000370766	NM_007131.3	65	gaG/gaC	0	
ST3GAL3	6487		GRCh37	1	44386079	44386079	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR064																					ENST00000361392.4:c.748G>T	p.Ala250Ser	p.A250S	ENST00000361392	NM_006279.3	250	Gca/Tca	0	
MKNK1	8569		GRCh37	1	47037091	47037091	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR064																					ENST00000371946.4:c.614C>G	p.Thr205Arg	p.T205R	ENST00000371946	NM_003684.5	205	aCa/aGa	0	
OTUD7B	56957		GRCh37	1	149916109	149916109	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR064																					ENST00000369135.4:c.2179T>C	p.Tyr727His	p.Y727H	ENST00000369135	NM_020205.3	727	Tat/Cat	0	
RABGAP1L	9910		GRCh37	1	174210699	174210699	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR064																					ENST00000251507.4:c.621C>G	p.Asp207Glu	p.D207E	ENST00000251507	NM_014857.4	207	gaC/gaG	0	
CACNA1E	777		GRCh37	1	181700310	181700310	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			brca_smc_2018_BR064																					ENST00000367573.2:c.2241-1G>T		p.X747_splice	ENST00000367573	NM_001205293.1	747		0	
TROVE2			GRCh37	1	193044991	193044991	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR064																					ENST00000367441.1:c.622G>T	p.Glu208Ter	p.E208*	ENST00000367441		208	Gaa/Taa	0	
EIF2D	1939		GRCh37	1	206784660	206784660	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR064																					ENST00000271764.2:c.124G>C	p.Val42Leu	p.V42L	ENST00000271764	NM_006893.2	42	Gta/Cta	0	
OR13G1	441933		GRCh37	1	247835828	247835828	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR064																					ENST00000359688.2:c.516C>A	p.Asp172Glu	p.D172E	ENST00000359688	NM_001005487.1	172	gaC/gaA	0	
DNAH7	56171		GRCh37	2	196720667	196720667	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR064																					ENST00000312428.6:c.8463A>C	p.Glu2821Asp	p.E2821D	ENST00000312428	NM_018897.2	2821	gaA/gaC	0	
CYP27A1	1593		GRCh37	2	219674445	219674445	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR064																					ENST00000258415.4:c.401A>C	p.Lys134Thr	p.K134T	ENST00000258415	NM_000784.3	134	aAg/aCg	0	
IMPG2	50939		GRCh37	3	100963604	100963604	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR064																					ENST00000193391.7:c.1571A>G	p.Asp524Gly	p.D524G	ENST00000193391	NM_016247.3	524	gAt/gGt	0	
LYAR	55646		GRCh37	4	4276245	4276245	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR064																					ENST00000343470.4:c.681G>T	p.Gln227His	p.Q227H	ENST00000343470	NM_017816.2	227	caG/caT	0	
DCHS2	54798		GRCh37	4	155264754	155264754	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR064																					ENST00000357232.4:c.845C>T	p.Ala282Val	p.A282V	ENST00000357232	NM_017639.3	282	gCt/gTt	0	
CSNK1G3	1456		GRCh37	5	122909210	122909210	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR064																					ENST00000361991.2:c.413C>T	p.Thr138Ile	p.T138I	ENST00000361991		138	aCa/aTa	0	
TCERG1	10915		GRCh37	5	145872580	145872580	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR064																					ENST00000296702.5:c.2210A>C	p.Glu737Ala	p.E737A	ENST00000296702	NM_006706.3	737	gAa/gCa	0	
COL23A1	91522		GRCh37	5	177697349	177697349	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR064																					ENST00000390654.3:c.457G>A	p.Asp153Asn	p.D153N	ENST00000390654	NM_173465.3	153	Gat/Aat	0	
CNOT6	57472		GRCh37	5	179992838	179992838	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR064																					ENST00000261951.4:c.578G>C	p.Cys193Ser	p.C193S	ENST00000261951	NM_015455.3	193	tGc/tCc	0	
ZKSCAN3	80317		GRCh37	6	28333641	28333641	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR064																					ENST00000252211.2:c.1196A>T	p.Glu399Val	p.E399V	ENST00000252211	NM_024493.3	399	gAg/gTg	0	
OR11A1	26531		GRCh37	6	29394740	29394740	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR064																					ENST00000377147.2:c.679C>G	p.Leu227Val	p.L227V	ENST00000377147	NM_013937.2	227	Ctg/Gtg	0	
HEATR2			GRCh37	7	796552	796552	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR064																					ENST00000297440.6:c.1391C>A	p.Pro464His	p.P464H	ENST00000297440	NM_017802.3	464	cCc/cAc	0	
OR2A7	401427		GRCh37	7	143956564	143956564	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR064																					ENST00000493325.1:c.158G>C	p.Arg53Thr	p.R53T	ENST00000493325	NM_001005328.1	53	aGa/aCa	0	
KCNH2	3757		GRCh37	7	150671805	150671805	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR064																					ENST00000262186.5:c.301A>C	p.Lys101Gln	p.K101Q	ENST00000262186	NM_000238.3	101	Aaa/Caa	0	
XPO7	23039		GRCh37	8	21840238	21840238	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR064																					ENST00000252512.9:c.1192G>T	p.Glu398Ter	p.E398*	ENST00000252512	NM_015024.4	398	Gag/Tag	0	
FAM135B	51059		GRCh37	8	139151309	139151309	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR064																					ENST00000395297.1:c.3821C>A	p.Ser1274Tyr	p.S1274Y	ENST00000395297	NM_015912.3	1274	tCc/tAc	0	
BNC2	54796		GRCh37	9	16436034	16436034	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR064																					ENST00000380672.4:c.2158C>T	p.Arg720Trp	p.R720W	ENST00000380672	NM_017637.5	720	Cgg/Tgg	0	
TNC	3371		GRCh37	9	117852915	117852915	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR064																					ENST00000350763.4:c.383A>G	p.Glu128Gly	p.E128G	ENST00000350763	NM_002160.3	128	gAg/gGg	0	
FAM129B	64855		GRCh37	9	130279440	130279440	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR064																					ENST00000373312.3:c.761G>T	p.Gly254Val	p.G254V	ENST00000373312	NM_022833.2	254	gGc/gTc	0	
ARHGAP21	57584		GRCh37	10	24873414	24873414	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR064																					ENST00000396432.2:c.5804C>G	p.Ser1935Cys	p.S1935C	ENST00000396432	NM_020824.3	1935	tCt/tGt	0	
FRAT2	23401		GRCh37	10	99093801	99093801	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR064																					ENST00000371019.2:c.529C>G	p.Arg177Gly	p.R177G	ENST00000371019	NM_012083.2	177	Cgg/Ggg	0	
KCNQ1	3784		GRCh37	11	2869139	2869139	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR064																					ENST00000155840.5:c.1937G>T	p.Gly646Val	p.G646V	ENST00000155840	NM_000218.2	646	gGc/gTc	0	
DKK3	27122		GRCh37	11	12030051	12030051	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR064																					ENST00000326932.4:c.79G>C	p.Ala27Pro	p.A27P	ENST00000326932	NM_013253.4	27	Gcg/Ccg	0	
TEX40			GRCh37	11	64072109	64072109	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BR064																					ENST00000328404.6:c.594C>G	p.Tyr198Ter	p.Y198*	ENST00000328404	NM_001039496.1	198	taC/taG	0	
NPAS4	266743		GRCh37	11	66190656	66190656	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR064																					ENST00000311034.2:c.761T>A	p.Leu254Gln	p.L254Q	ENST00000311034	NM_178864.3	254	cTg/cAg	0	
DLG2	1740		GRCh37	11	84996365	84996365	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR064																					ENST00000376104.2:c.85A>T	p.Ser29Cys	p.S29C	ENST00000376104	NM_001142699.1	29	Agt/Tgt	0	
PLBD1	79887		GRCh37	12	14689610	14689610	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR064																					ENST00000240617.5:c.593G>A	p.Ser198Asn	p.S198N	ENST00000240617	NM_024829.5	198	aGt/aAt	0	
C12orf75	387882		GRCh37	12	105759617	105759617	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR064																					ENST00000443585.1:c.104G>T	p.Arg35Met	p.R35M	ENST00000443585	NM_001145199.1	35	aGg/aTg	0	
RFX4	5992		GRCh37	12	106977138	106977138	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR064																					ENST00000392842.1:c.40A>T	p.Thr14Ser	p.T14S	ENST00000392842	NM_213594.2	14	Aca/Tca	0	
MAX	4149		GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR064																					ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg	0	
TBC1D2B	23102		GRCh37	15	78369967	78369967	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR064																					ENST00000300584.3:c.28G>A	p.Glu10Lys	p.E10K	ENST00000300584	NM_144572.1	10	Gag/Aag	0	
SLC47A1	55244		GRCh37	17	19480780	19480780	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR064																					ENST00000270570.4:c.1627G>T	p.Val543Leu	p.V543L	ENST00000270570	NM_018242.2	543	Gtg/Ttg	0	
RNF213	57674		GRCh37	17	78262116	78262116	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR064																					ENST00000582970.1:c.764C>G	p.Thr255Arg	p.T255R	ENST00000582970	NM_001256071.1	255	aCa/aGa	0	
KIAA1683			GRCh37	19	18376747	18376747	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR064																					ENST00000600328.3:c.1603G>T	p.Ala535Ser	p.A535S	ENST00000600328		535	Gcg/Tcg	0	
ZNF536	9745		GRCh37	19	30936097	30936097	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR064																					ENST00000355537.3:c.1628C>G	p.Pro543Arg	p.P543R	ENST00000355537	NM_014717.1	543	cCg/cGg	0	
HNF4A	3172		GRCh37	20	43052813	43052813	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR064																					ENST00000316099.4:c.1048C>T	p.Gln350Ter	p.Q350*	ENST00000316099	NM_001258355.1	350	Cag/Tag	0	
OCSTAMP	128506		GRCh37	20	45174817	45174817	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR064																					ENST00000279028.2:c.196G>T	p.Val66Phe	p.V66F	ENST00000279028	NM_080721.2	66	Gtt/Ttt	0	
NTSR1	4923		GRCh37	20	61340794	61340794	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR064																					ENST00000370501.3:c.235G>C	p.Val79Leu	p.V79L	ENST00000370501	NM_002531.2	79	Gtg/Ctg	0	
IGLC1	3537		GRCh37	22	23237804	23237804	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR064																					ENST00000390321.2:c.250G>T	p.Ser84Ile	p.S84I	ENST00000390321		84	aGc/aTc	0	
GATA1	2623		GRCh37	X	48650460	48650460	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR064																					ENST00000376670.3:c.430G>A	p.Asp144Asn	p.D144N	ENST00000376670	NM_002049.3	144	Gac/Aac	0	
DLG3	1741		GRCh37	X	69699055	69699055	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR064																					ENST00000374360.3:c.1461C>A	p.Ser487Arg	p.S487R	ENST00000374360	NM_021120.3	487	agC/agA	0	
SYTL4	94121		GRCh37	X	99946111	99946111	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR064																					ENST00000263033.5:c.635C>A	p.Thr212Asn	p.T212N	ENST00000263033	NM_001129896.2	212	aCc/aAc	0	
GDI1	2664		GRCh37	X	153666911	153666911	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR064																					ENST00000447750.2:c.88G>A	p.Val30Met	p.V30M	ENST00000447750	NM_001493.2	30	Gtg/Atg	0	
CLCC1	23155		GRCh37	1	109506066	109506066	+	5_prime_UTR_variant	5'UTR	SNP	G	G	C			brca_smc_2018_BR145																					ENST00000369971.2:c.-85C>G		p.*29*	ENST00000369971	NM_001048210.2			0	
SPAG17	200162		GRCh37	1	118550765	118550765	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR145																					ENST00000336338.5:c.4489C>G	p.Arg1497Gly	p.R1497G	ENST00000336338	NM_206996.2	1497	Cgc/Ggc	0	
OR2M4	26245		GRCh37	1	248403108	248403108	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR145																					ENST00000306687.1:c.878G>A	p.Arg293His	p.R293H	ENST00000306687	NM_017504.1	293	cGc/cAc	0	
ASXL2	55252		GRCh37	2	25982363	25982363	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR145																					ENST00000435504.4:c.927G>C	p.Glu309Asp	p.E309D	ENST00000435504		309	gaG/gaC	0	
GRM2	2912		GRCh37	3	51747314	51747314	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR145																					ENST00000395052.3:c.1276G>A	p.Val426Ile	p.V426I	ENST00000395052	NM_000839.3	426	Gtc/Atc	0	
PDZD2	23037		GRCh37	5	31983467	31983467	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR145																					ENST00000438447.1:c.683A>T	p.Asn228Ile	p.N228I	ENST00000438447		228	aAc/aTc	0	
PANK3	79646		GRCh37	5	167993112	167993112	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR145																					ENST00000239231.6:c.541G>A	p.Asp181Asn	p.D181N	ENST00000239231	NM_024594.3	181	Gat/Aat	0	
LAMB4	22798		GRCh37	7	107732195	107732195	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR145																					ENST00000205386.4:c.1577A>T	p.Glu526Val	p.E526V	ENST00000205386		526	gAa/gTa	0	
TMPRSS13	84000		GRCh37	11	117789327	117789327	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR145																					ENST00000524993.1:c.248A>G	p.Gln83Arg	p.Q83R	ENST00000524993	NM_001077263.2	83	cAg/cGg	0	
CIT	11113		GRCh37	12	120306886	120306886	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR145																					ENST00000261833.7:c.216C>A	p.His72Gln	p.H72Q	ENST00000261833	NM_007174.2	72	caC/caA	0	
KLHDC2	23588		GRCh37	14	50244659	50244659	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR145																					ENST00000298307.5:c.454G>C	p.Val152Leu	p.V152L	ENST00000298307	NM_014315.2	152	Gta/Cta	0	
CACNA1A	773		GRCh37	19	13335543	13335543	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR145																					ENST00000360228.5:c.5669T>A	p.Val1890Asp	p.V1890D	ENST00000360228	NM_001127222.1	1890	gTc/gAc	0	
WDR62	284403		GRCh37	19	36572414	36572414	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR145																					ENST00000270301.7:c.1313G>C	p.Arg438Pro	p.R438P	ENST00000270301		438	cGc/cCc	0	
CEACAM4	1089		GRCh37	19	42132040	42132040	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR145																					ENST00000221954.2:c.359A>G	p.Tyr120Cys	p.Y120C	ENST00000221954	NM_001817.2	120	tAc/tGc	0	
MIOX	55586		GRCh37	22	50926725	50926725	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR145																					ENST00000216075.6:c.362T>A	p.Leu121His	p.L121H	ENST00000216075	NM_017584.5	121	cTc/cAc	0	
PHEX	5251		GRCh37	X	22132606	22132606	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR145																					ENST00000379374.4:c.1204C>A	p.Gln402Lys	p.Q402K	ENST00000379374	NM_000444.4	402	Caa/Aaa	0	
MEGF6	1953		GRCh37	1	3511988	3511988	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR195																					ENST00000356575.4:c.290G>A	p.Arg97Lys	p.R97K	ENST00000356575	NM_001409.3	97	aGg/aAg	0	
KIAA0754	643314		GRCh37	1	39880156	39880156	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR195																					ENST00000530275.1:c.3811G>C	p.Val1271Leu	p.V1271L	ENST00000530275	NM_015038.1	1271	Gtc/Ctc	0	
LRRC53	105378803		GRCh37	1	74946037	74946037	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000294635.4:c.704C>T	p.Ser235Phe	p.S235F	ENST00000294635		235	tCt/tTt	0	
SLC44A5	204962		GRCh37	1	75704312	75704312	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR195																					ENST00000370855.5:c.542G>A	p.Arg181Lys	p.R181K	ENST00000370855	NM_152697.4	181	aGa/aAa	0	
ARHGAP29	9411		GRCh37	1	94639640	94639640	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000260526.6:c.3571C>T	p.Pro1191Ser	p.P1191S	ENST00000260526	NM_004815.3	1191	Cct/Tct	0	
GABPB2	126626		GRCh37	1	151065815	151065815	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR195																					ENST00000368918.3:c.424G>C	p.Asp142His	p.D142H	ENST00000368918	NM_144618.2	142	Gac/Cac	0	
PI4KB	5298		GRCh37	1	151266923	151266923	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR195																					ENST00000368873.1:c.2110G>C	p.Glu704Gln	p.E704Q	ENST00000368873		704	Gag/Cag	0	
POGZ	23126		GRCh37	1	151381185	151381185	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR195																					ENST00000271715.2:c.2046G>C	p.Leu682Phe	p.L682F	ENST00000271715	NM_015100.3	682	ttG/ttC	0	
IVL	3713		GRCh37	1	152883534	152883534	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000368764.3:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000368764		421	Gag/Aag	0	
CEP350	9857		GRCh37	1	180022266	180022266	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR195																					ENST00000367607.3:c.4954G>T	p.Ala1652Ser	p.A1652S	ENST00000367607	NM_014810.4	1652	Gct/Tct	0	
DUSP10	11221		GRCh37	1	221879530	221879530	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR195																					ENST00000366899.3:c.1090G>A	p.Glu364Lys	p.E364K	ENST00000366899	NM_007207.4	364	Gag/Aag	0	
CDC42BPA	8476		GRCh37	1	227348324	227348324	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR195																					ENST00000334218.5:c.613G>C	p.Asp205His	p.D205H	ENST00000334218		205	Gac/Cac	0	
APOB	338		GRCh37	2	21250834	21250834	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR195																					ENST00000233242.1:c.1933C>G	p.Leu645Val	p.L645V	ENST00000233242	NM_000384.2	645	Ctt/Gtt	0	
CAD	790		GRCh37	2	27455909	27455909	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000264705.4:c.2893-1G>A		p.X965_splice	ENST00000264705	NM_004341.3	965		0	
CAD	790		GRCh37	2	27456933	27456933	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000264705.4:c.3457G>A	p.Glu1153Lys	p.E1153K	ENST00000264705	NM_004341.3	1153	Gag/Aag	0	
CAPN14	440854		GRCh37	2	31412309	31412309	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR195																					ENST00000403897.3:c.1323C>G	p.Phe441Leu	p.F441L	ENST00000403897	NM_001145122.1	441	ttC/ttG	0	
HEATR5B	54497		GRCh37	2	37255150	37255150	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000233099.5:c.3769C>T	p.Arg1257Ter	p.R1257*	ENST00000233099	NM_019024.1	1257	Cga/Tga	0	
ELMOD3	84173		GRCh37	2	85616934	85616934	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000393852.4:c.799G>A	p.Glu267Lys	p.E267K	ENST00000393852	NM_001135023.1	267	Gag/Aag	0	
ZAP70	7535		GRCh37	2	98354003	98354003	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000264972.5:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000264972	NM_001079.3	453	Gag/Aag	0	
SCN7A	6332		GRCh37	2	167322339	167322339	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR195																					ENST00000409855.1:c.823G>C	p.Glu275Gln	p.E275Q	ENST00000409855	NM_002976.3	275	Gaa/Caa	0	
WDR75	84128		GRCh37	2	190324065	190324065	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR195																					ENST00000314761.4:c.693G>C	p.Arg231Ser	p.R231S	ENST00000314761	NM_032168.1	231	agG/agC	0	
PASK	23178		GRCh37	2	242082446	242082446	+	start_lost	Translation_Start_Site	SNP	A	A	G			brca_smc_2018_BR195																					ENST00000234040.4:c.2T>C	p.Met1?	p.M1?	ENST00000234040	NM_001252119.1	1	aTg/aCg	0	
LMCD1	29995		GRCh37	3	8590308	8590308	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR195																					ENST00000157600.3:c.442G>C	p.Glu148Gln	p.E148Q	ENST00000157600	NM_014583.3	148	Gag/Cag	0	
MYRIP	25924		GRCh37	3	40231373	40231373	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000302541.6:c.1084G>A	p.Ala362Thr	p.A362T	ENST00000302541	NM_015460.2	362	Gct/Act	0	
KIAA1524			GRCh37	3	108271125	108271125	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR195																					ENST00000295746.8:c.2503G>C	p.Glu835Gln	p.E835Q	ENST00000295746	NM_020890.2	835	Gaa/Caa	0	
BOC	91653		GRCh37	3	113002302	113002302	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR195																					ENST00000355385.3:c.2476C>G	p.Leu826Val	p.L826V	ENST00000355385	NM_033254.2	826	Ctg/Gtg	0	
NPHP3	27031		GRCh37	3	132403489	132403489	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR195																					ENST00000337331.5:c.3479G>A	p.Arg1160Lys	p.R1160K	ENST00000337331	NM_153240.4	1160	aGa/aAa	0	
ARHGAP24	83478		GRCh37	4	86898820	86898820	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000395184.1:c.904G>A	p.Glu302Lys	p.E302K	ENST00000395184	NM_001025616.2	302	Gaa/Aaa	0	
HERC3	8916		GRCh37	4	89591320	89591320	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000264345.3:c.1828G>A	p.Asp610Asn	p.D610N	ENST00000264345		610	Gat/Aat	0	
TACR3	6870		GRCh37	4	104640305	104640305	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR195																					ENST00000304883.2:c.528G>A	p.Met176Ile	p.M176I	ENST00000304883	NM_001059.2	176	atG/atA	0	
C4orf21			GRCh37	4	113539720	113539720	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000445203.2:c.1385C>T	p.Ser462Phe	p.S462F	ENST00000445203		462	tCt/tTt	0	
CCDC110	256309		GRCh37	4	186380054	186380054	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR195																					ENST00000307588.3:c.1687G>A	p.Glu563Lys	p.E563K	ENST00000307588	NM_152775.3	563	Gaa/Aaa	0	
FAT1	2195		GRCh37	4	187629880	187629880	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR195																					ENST00000441802.2:c.1102G>C	p.Glu368Gln	p.E368Q	ENST00000441802	NM_005245.3	368	Gaa/Caa	0	
CDH9	1007		GRCh37	5	26903910	26903910	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR195																					ENST00000231021.4:c.835G>A	p.Glu279Lys	p.E279K	ENST00000231021	NM_016279.3	279	Gag/Aag	0	
ZFYVE16	9765		GRCh37	5	79752327	79752327	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR195																					ENST00000338008.5:c.3738G>T	p.Leu1246Phe	p.L1246F	ENST00000338008	NM_014733.3	1246	ttG/ttT	0	
UBLCP1	134510		GRCh37	5	158696044	158696044	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR195																					ENST00000296786.6:c.121G>C	p.Glu41Gln	p.E41Q	ENST00000296786	NM_145049.3	41	Gaa/Caa	0	
LAMA2	3908		GRCh37	6	129609068	129609068	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR195																					ENST00000421865.2:c.2614G>C	p.Asp872His	p.D872H	ENST00000421865	NM_001079823.1	872	Gac/Cac	0	
PLEKHG1	57480		GRCh37	6	151130862	151130862	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR195																					ENST00000358517.2:c.1270C>T	p.Pro424Ser	p.P424S	ENST00000358517		424	Cca/Tca	0	
AMZ1	155185		GRCh37	7	2752078	2752078	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000312371.4:c.1063G>A	p.Glu355Lys	p.E355K	ENST00000312371	NM_133463.1	355	Gag/Aag	0	
AHR	196		GRCh37	7	17382605	17382605	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR195																					ENST00000242057.4:c.2464C>T	p.Gln822Ter	p.Q822*	ENST00000242057	NM_001621.4	822	Cag/Tag	0	
TNS3	64759		GRCh37	7	47317683	47317683	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR195																					ENST00000311160.9:c.4329G>C	p.Lys1443Asn	p.K1443N	ENST00000311160	NM_022748.11	1443	aaG/aaC	0	
SAMD9	54809		GRCh37	7	92732719	92732719	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR195																					ENST00000379958.2:c.2692G>C	p.Glu898Gln	p.E898Q	ENST00000379958	NM_017654.3	898	Gaa/Caa	0	
SGCE	8910		GRCh37	7	94230071	94230071	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR195																					ENST00000265735.7:c.924G>C	p.Leu308Phe	p.L308F	ENST00000265735	NM_003919.2	308	ttG/ttC	0	
RELN	5649		GRCh37	7	103292181	103292181	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR195																					ENST00000428762.1:c.1819G>A	p.Glu607Lys	p.E607K	ENST00000428762	NM_005045.3	607	Gaa/Aaa	0	
CSMD3	114788		GRCh37	8	113331177	113331177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR195																					ENST00000297405.5:c.7249G>A	p.Asp2417Asn	p.D2417N	ENST00000297405	NM_198123.1	2417	Gat/Aat	0	
TOPORS	10210		GRCh37	9	32542817	32542817	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR195																					ENST00000360538.2:c.1706C>A	p.Ser569Ter	p.S569*	ENST00000360538	NM_005802.4	569	tCa/tAa	0	
C9orf24	84688		GRCh37	9	34382763	34382763	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000297623.2:c.385C>T	p.Arg129Trp	p.R129W	ENST00000297623	NM_032596.3	129	Cgg/Tgg	0	
ZNF462	58499		GRCh37	9	109701259	109701259	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000277225.5:c.6298G>A	p.Glu2100Lys	p.E2100K	ENST00000277225		2100	Gaa/Aaa	0	
SLC25A28	81894		GRCh37	10	101370805	101370805	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000370495.4:c.896C>T	p.Ser299Leu	p.S299L	ENST00000370495	NM_031212.3	299	tCa/tTa	0	
NAT10	55226		GRCh37	11	34153706	34153706	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR195																					ENST00000257829.3:c.1555C>T	p.His519Tyr	p.H519Y	ENST00000257829	NM_024662.2	519	Cac/Tac	0	
OR5M10	390167		GRCh37	11	56344509	56344509	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000526812.2:c.689C>T	p.Ser230Phe	p.S230F	ENST00000526812	NM_001004741.1	230	tCt/tTt	0	
LRRC55	219527		GRCh37	11	56950043	56950043	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000497933.1:c.676G>A	p.Glu226Lys	p.E226K	ENST00000497933	NM_001005210.2	226	Gag/Aag	0	
CLPB	81570		GRCh37	11	72019639	72019639	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR195																					ENST00000294053.3:c.1088G>T	p.Arg363Met	p.R363M	ENST00000294053	NM_001258394.1	363	aGg/aTg	0	
KCTD21	283219		GRCh37	11	77885240	77885240	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000340067.3:c.361C>T	p.Gln121Ter	p.Q121*	ENST00000340067	NM_001029859.1	121	Cag/Tag	0	
PTPRB	5787		GRCh37	12	70988429	70988429	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR195																					ENST00000261266.5:c.680G>C	p.Gly227Ala	p.G227A	ENST00000261266	NM_002837.4	227	gGg/gCg	0	
HIP1R	9026		GRCh37	12	123338635	123338635	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR195																					ENST00000253083.4:c.623C>T	p.Ser208Leu	p.S208L	ENST00000253083	NM_003959.1	208	tCa/tTa	0	
ATP7B	540		GRCh37	13	52523812	52523812	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000242839.4:c.2851C>T	p.Gln951Ter	p.Q951*	ENST00000242839	NM_000053.3	951	Cag/Tag	0	
RBM26	64062		GRCh37	13	79939753	79939753	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR195																					ENST00000438737.2:c.1377G>C	p.Leu459Phe	p.L459F	ENST00000438737	NM_001286631.1	459	ttG/ttC	0	
CCDC175	729665		GRCh37	14	60041697	60041697	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR195																					ENST00000537690.2:c.207C>G	p.Ile69Met	p.I69M	ENST00000537690	NM_001164399.1	69	atC/atG	0	
SPTB	6710		GRCh37	14	65258550	65258550	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR195																					ENST00000389721.5:c.2691G>A	p.Met897Ile	p.M897I	ENST00000389721	NM_000347.5	897	atG/atA	0	
RPAP1	26015		GRCh37	15	41829293	41829293	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR195																					ENST00000304330.4:c.31G>A	p.Glu11Lys	p.E11K	ENST00000304330	NM_015540.2	11	Gag/Aag	0	
MYZAP	100820829		GRCh37	15	57967233	57967233	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR195																					ENST00000267853.5:c.1271G>C	p.Arg424Thr	p.R424T	ENST00000267853		424	aGa/aCa	0	
ULK3	25989		GRCh37	15	75131059	75131059	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR195																					ENST00000440863.2:c.1027G>A	p.Glu343Lys	p.E343K	ENST00000440863	NM_001099436.1	343	Gag/Aag	0	
ZNF710	374655		GRCh37	15	90611588	90611588	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR195																					ENST00000268154.4:c.1219C>T	p.His407Tyr	p.H407Y	ENST00000268154	NM_198526.2	407	Cat/Tat	0	
RAP1GAP2	23108		GRCh37	17	2888346	2888346	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR195																					ENST00000254695.8:c.799C>G	p.Gln267Glu	p.Q267E	ENST00000254695	NM_015085.4	267	Caa/Gaa	0	
TP53	7157		GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR195																					ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc	0	
COPS3	8533		GRCh37	17	17174253	17174253	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR195																					ENST00000268717.5:c.255C>G	p.Ile85Met	p.I85M	ENST00000268717	NM_003653.3	85	atC/atG	0	
CPD	1362		GRCh37	17	28769329	28769329	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000225719.4:c.2234G>A	p.Gly745Glu	p.G745E	ENST00000225719	NM_001304.4	745	gGa/gAa	0	
CPD	1362		GRCh37	17	28769443	28769443	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR195																					ENST00000225719.4:c.2348G>C	p.Arg783Thr	p.R783T	ENST00000225719	NM_001304.4	783	aGa/aCa	0	
PPM1E	22843		GRCh37	17	57057984	57057984	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR195																					ENST00000308249.2:c.1860G>C	p.Trp620Cys	p.W620C	ENST00000308249	NM_014906.4	620	tgG/tgC	0	
CCBE1	147372		GRCh37	18	57103172	57103172	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR195																					ENST00000439986.4:c.1189G>C	p.Asp397His	p.D397H	ENST00000439986	NM_133459.3	397	Gac/Cac	0	
SWSAP1	126074		GRCh37	19	11486555	11486555	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR195																					ENST00000312423.2:c.553G>C	p.Glu185Gln	p.E185Q	ENST00000312423	NM_175871.3	185	Gag/Cag	0	
STK4	6789		GRCh37	20	43615785	43615785	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000372806.3:c.373G>A	p.Glu125Lys	p.E125K	ENST00000372806	NM_006282.2	125	Gaa/Aaa	0	
CLTCL1	8218		GRCh37	22	19226833	19226833	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR195																					ENST00000427926.1:c.760C>T	p.Pro254Ser	p.P254S	ENST00000427926		254	Cca/Tca	0	
PRR14L	253143		GRCh37	22	32110406	32110406	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR195																					ENST00000327423.6:c.3419T>C	p.Leu1140Ser	p.L1140S	ENST00000327423	NM_173566.2	1140	tTa/tCa	0	
FAM227A	646851		GRCh37	22	39022220	39022220	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR195																					ENST00000535113.1:c.815C>G	p.Ser272Cys	p.S272C	ENST00000535113	NM_001013647.1	272	tCt/tGt	0	
CASK	8573		GRCh37	X	41390392	41390392	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR195																					ENST00000378163.1:c.2388G>A	p.Met796Ile	p.M796I	ENST00000378163		796	atG/atA	0	
JADE3	9767		GRCh37	X	46917650	46917650	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BR195																					ENST00000218343.4:c.1643C>G	p.Ser548Ter	p.S548*	ENST00000218343	NM_014735.3	548	tCa/tGa	0	
SRPK3	26576		GRCh37	X	153049643	153049643	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR195																					ENST00000370101.3:c.1122G>C	p.Glu374Asp	p.E374D	ENST00000370101	NM_001170760.1	374	gaG/gaC	0	
RUVBL1	8607		GRCh37	3	127817784	127817784	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR188																					ENST00000322623.5:c.758G>A	p.Gly253Glu	p.G253E	ENST00000322623	NM_003707.2	253	gGa/gAa	0	
EPHB1	2047		GRCh37	3	134873116	134873116	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR188																					ENST00000398015.3:c.1420A>G	p.Lys474Glu	p.K474E	ENST00000398015	NM_004441.4	474	Aag/Gag	0	
LRRC18	474354		GRCh37	10	50122064	50122064	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR188																					ENST00000298124.3:c.137T>C	p.Ile46Thr	p.I46T	ENST00000298124		46	aTt/aCt	0	
VCL	7414		GRCh37	10	75854114	75854114	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR188																					ENST00000211998.4:c.1438G>A	p.Ala480Thr	p.A480T	ENST00000211998	NM_014000.2	480	Gct/Act	0	
PTEN	5728		GRCh37	10	89712017	89712017	+	splice_donor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BR188																					ENST00000371953.3:c.634+1G>A		p.X212_splice	ENST00000371953	NM_000314.4	212		0	
ANKRD13D	338692		GRCh37	11	67069214	67069214	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR188																					ENST00000308440.6:c.1263G>A	p.Trp421Ter	p.W421*	ENST00000308440		421	tgG/tgA	0	
P2RX2	22953		GRCh37	12	133198470	133198470	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR188																					ENST00000389110.3:c.1328C>A	p.Ala443Asp	p.A443D	ENST00000389110	NM_170682.2	443	gCc/gAc	0	
LRRC49	54839		GRCh37	15	71329535	71329535	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR188																					ENST00000260382.5:c.1721A>G	p.Tyr574Cys	p.Y574C	ENST00000260382	NM_001199017.1	574	tAt/tGt	0	
KRTAP4-8	728224		GRCh37	17	39254054	39254054	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR188																					ENST00000333822.4:c.283T>A	p.Cys95Ser	p.C95S	ENST00000333822	NM_031960.2	95	Tgc/Agc	0	
HMGN5	79366		GRCh37	X	80370276	80370276	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR188																					ENST00000358130.2:c.721G>T	p.Asp241Tyr	p.D241Y	ENST00000358130	NM_030763.2	241	Gat/Tat	0	
CCDC160	347475		GRCh37	X	133379122	133379122	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR188																					ENST00000370809.4:c.292T>C	p.Tyr98His	p.Y98H	ENST00000370809	NM_001101357.1	98	Tat/Cat	0	
COL16A1	1307		GRCh37	1	32149562	32149562	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR088																					ENST00000373672.3:c.2326A>C	p.Lys776Gln	p.K776Q	ENST00000373672	NM_001856.3	776	Aag/Cag	0	
ERI3	79033		GRCh37	1	44774060	44774060	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR088																					ENST00000372257.2:c.680G>T	p.Trp227Leu	p.W227L	ENST00000372257	NM_024066.1	227	tGg/tTg	0	
SLC44A5	204962		GRCh37	1	75681542	75681542	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR088																					ENST00000370855.5:c.1625G>C	p.Arg542Pro	p.R542P	ENST00000370855	NM_152697.4	542	cGt/cCt	0	
WDR63	126820		GRCh37	1	85560167	85560167	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR088																					ENST00000294664.6:c.1102T>A	p.Phe368Ile	p.F368I	ENST00000294664	NM_145172.3	368	Ttt/Att	0	
ILDR2	387597		GRCh37	1	166927140	166927140	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR088																					ENST00000271417.3:c.245A>G	p.Lys82Arg	p.K82R	ENST00000271417	NM_199351.2	82	aAg/aGg	0	
SELP	6403		GRCh37	1	169566306	169566306	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR088																					ENST00000263686.6:c.1814G>C	p.Gly605Ala	p.G605A	ENST00000263686	NM_003005.3	605	gGc/gCc	0	
IGFN1	91156		GRCh37	1	201185804	201185804	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR088																					ENST00000295591.8:c.998C>T	p.Thr333Ile	p.T333I	ENST00000295591		333	aCc/aTc	0	
GGPS1	9453		GRCh37	1	235506017	235506017	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR088																					ENST00000282841.5:c.833G>C	p.Arg278Pro	p.R278P	ENST00000282841		278	cGt/cCt	0	
VIT	5212		GRCh37	2	37014342	37014342	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR088																					ENST00000389975.3:c.936G>C	p.Gln312His	p.Q312H	ENST00000389975	NM_001177970.1	312	caG/caC	0	
CCDC85A	114800		GRCh37	2	56599488	56599488	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR088																					ENST00000407595.2:c.1327A>G	p.Asn443Asp	p.N443D	ENST00000407595	NM_001080433.1	443	Aat/Gat	0	
TBC1D8	11138		GRCh37	2	101655038	101655038	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR088																					ENST00000376840.4:c.1115T>C	p.Phe372Ser	p.F372S	ENST00000376840		372	tTc/tCc	0	
TBC1D23	55773		GRCh37	3	99979876	99979876	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR088																					ENST00000394144.4:c.14A>G	p.Glu5Gly	p.E5G	ENST00000394144	NM_001199198.2	5	gAa/gGa	0	
RICTOR	253260		GRCh37	5	38955757	38955757	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR088																					ENST00000357387.3:c.2549C>G	p.Ala850Gly	p.A850G	ENST00000357387	NM_152756.3	850	gCa/gGa	0	
DUSP22	56940		GRCh37	6	348152	348152	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR088																					ENST00000344450.5:c.313A>G	p.Thr105Ala	p.T105A	ENST00000344450	NM_020185.3	105	Acc/Gcc	0	
CMAHP	8418		GRCh37	6	25097393	25097393	+	non_coding_transcript_exon_variant	RNA	SNP	A	A	T			brca_smc_2018_BR088																					ENST00000377989.4:n.1566T>A		p.*522*	ENST00000377989				0	
SLC22A7	10864		GRCh37	6	43267364	43267364	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			brca_smc_2018_BR088																					ENST00000372585.5:c.504-1G>T		p.X168_splice	ENST00000372585	NM_153320.2	168		0	
AIM1			GRCh37	6	106992670	106992670	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BR088																					ENST00000369066.3:c.3950C>G	p.Ser1317Ter	p.S1317*	ENST00000369066	NM_001624.2	1317	tCa/tGa	0	
KIF13B	23303		GRCh37	8	29006174	29006174	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR088																					ENST00000524189.1:c.1733C>G	p.Ser578Cys	p.S578C	ENST00000524189	NM_015254.3	578	tCc/tGc	0	
LRRC6	23639		GRCh37	8	133584624	133584624	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR088																					ENST00000519595.1:c.1331A>C	p.Glu444Ala	p.E444A	ENST00000519595	NM_012472.4	444	gAa/gCa	0	
GRHPR	9380		GRCh37	9	37424929	37424929	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR088																					ENST00000318158.6:c.171C>A	p.Cys57Ter	p.C57*	ENST00000318158	NM_012203.1	57	tgC/tgA	0	
OR13C2	392376		GRCh37	9	107367895	107367895	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR088																					ENST00000542196.1:c.14A>C	p.Asn5Thr	p.N5T	ENST00000542196	NM_001004481.1	5	aAc/aCc	0	
FRRS1L	23732		GRCh37	9	111909440	111909440	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR088																					ENST00000561981.2:c.506C>T	p.Thr169Ile	p.T169I	ENST00000561981	NM_014334.2	169	aCc/aTc	0	
LYZL2	119180		GRCh37	10	30915171	30915171	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR088																					ENST00000375318.2:c.299A>G	p.Glu100Gly	p.E100G	ENST00000375318	NM_183058.2	100	gAg/gGg	0	
CKAP5	9793		GRCh37	11	46766123	46766123	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR088																					ENST00000529230.1:c.5709C>G	p.Ile1903Met	p.I1903M	ENST00000529230		1903	atC/atG	0	
FNBP4	23360		GRCh37	11	47774485	47774485	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR088																					ENST00000263773.5:c.620A>C	p.Gln207Pro	p.Q207P	ENST00000263773	NM_015308.2	207	cAg/cCg	0	
GALNT8	26290		GRCh37	12	4830039	4830039	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR088																					ENST00000252318.2:c.196G>C	p.Glu66Gln	p.E66Q	ENST00000252318	NM_017417.1	66	Gaa/Caa	0	
LMO7	4008		GRCh37	13	76407239	76407239	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR088																					ENST00000465261.2:c.2303T>C	p.Leu768Pro	p.L768P	ENST00000465261	NM_015842.2	768	cTt/cCt	0	
COL4A2-AS2	100129836		GRCh37	13	111109705	111109705	+	splice_acceptor_variant,non_coding_transcript_variant	Splice_Site	SNP	T	T	G			brca_smc_2018_BR088																					ENST00000458403.2:n.562-2A>C		p.X188_splice	ENST00000458403		188		0	
MYH6	4624		GRCh37	14	23872566	23872566	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR088																					ENST00000356287.3:c.889G>A	p.Glu297Lys	p.E297K	ENST00000356287		297	Gag/Aag	0	
POLE2	5427		GRCh37	14	50122443	50122443	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR088																					ENST00000216367.5:c.874G>C	p.Asp292His	p.D292H	ENST00000216367	NM_002692.3	292	Gat/Cat	0	
EML1	2009		GRCh37	14	100364577	100364577	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR088																					ENST00000262233.6:c.835G>A	p.Val279Ile	p.V279I	ENST00000262233	NM_004434.2	279	Gtt/Att	0	
RBL2	5934		GRCh37	16	53504576	53504576	+	splice_donor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BR088																					ENST00000262133.6:c.2526+1G>C		p.X842_splice	ENST00000262133	NM_005611.3	842		0	
RAI1	10743		GRCh37	17	17696324	17696324	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR088																					ENST00000353383.1:c.62C>T	p.Ser21Leu	p.S21L	ENST00000353383	NM_030665.3	21	tCg/tTg	0	
XYLT2	64132		GRCh37	17	48431199	48431199	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR088																					ENST00000017003.2:c.344C>T	p.Pro115Leu	p.P115L	ENST00000017003	NM_022167.2	115	cCg/cTg	0	
ANKRD12	23253		GRCh37	18	9258471	9258471	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR088																					ENST00000262126.4:c.5206A>T	p.Thr1736Ser	p.T1736S	ENST00000262126	NM_015208.4	1736	Act/Tct	0	
DSC3	1825		GRCh37	18	28584299	28584299	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR088																					ENST00000360428.4:c.1922C>A	p.Ala641Asp	p.A641D	ENST00000360428	NM_001941.3	641	gCt/gAt	0	
PNPLA6	10908		GRCh37	19	7606519	7606519	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR088																					ENST00000414982.3:c.1144A>G	p.Thr382Ala	p.T382A	ENST00000414982	NM_001166111.1	382	Acc/Gcc	0	
ZSWIM4	65249		GRCh37	19	13928045	13928045	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR088																					ENST00000254323.2:c.1196G>A	p.Gly399Asp	p.G399D	ENST00000254323	NM_023072.2	399	gGc/gAc	0	
ZNF257	113835		GRCh37	19	22271680	22271680	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR088																					ENST00000594947.1:c.1128G>C	p.Glu376Asp	p.E376D	ENST00000594947	NM_033468.2	376	gaG/gaC	0	
PNMAL1			GRCh37	19	46973596	46973596	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR088																					ENST00000313683.10:c.697C>G	p.Arg233Gly	p.R233G	ENST00000313683	NM_018215.3	233	Cgc/Ggc	0	
URB1	9875		GRCh37	21	33697537	33697537	+	splice_donor_variant	Splice_Site	SNP	A	A	C			brca_smc_2018_BR088																					ENST00000382751.3:c.5121+2T>G		p.X1707_splice	ENST00000382751	NM_014825.2	1707		0	
ICOSLG	23308		GRCh37	21	45656914	45656914	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR088																					ENST00000407780.3:c.242G>A	p.Arg81Gln	p.R81Q	ENST00000407780	NM_001283052.1	81	cGg/cAg	0	
LMF2	91289		GRCh37	22	50942086	50942086	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR088																					ENST00000474879.2:c.1858G>C	p.Ala620Pro	p.A620P	ENST00000474879	NM_033200.2	620	Gcc/Ccc	0	
ASB12	142689		GRCh37	X	63445033	63445033	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR088																					ENST00000362002.2:c.498C>A	p.Asn166Lys	p.N166K	ENST00000362002	NM_130388.3	166	aaC/aaA	0	
ARMCX4	100131755		GRCh37	X	100747988	100747988	+	intron_variant,NMD_transcript_variant	Intron	SNP	G	G	C			brca_smc_2018_BR088																					ENST00000433011.1:c.1038+3686G>C		p.*346*	ENST00000433011				0	
CDK11B	984		GRCh37	1	1575684	1575684	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR148																					ENST00000407249.3:c.1214C>G	p.Pro405Arg	p.P405R	ENST00000407249		405	cCc/cGc	0	
PIK3CA	5290		GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR148																					ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA	0	
LATS2	26524		GRCh37	13	21549043	21549043	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR148																					ENST00000382592.4:c.3233A>T	p.Asp1078Val	p.D1078V	ENST00000382592	NM_014572.2	1078	gAt/gTt	0	
CDH1	999		GRCh37	16	68844246	68844246	+	splice_donor_variant	Splice_Site	SNP	T	T	C			brca_smc_2018_BR148																					ENST00000261769.5:c.832+2T>C		p.X278_splice	ENST00000261769	NM_004360.3	278		0	
RASAL3	64926		GRCh37	19	15572359	15572359	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR148																					ENST00000343625.7:c.388C>T	p.Pro130Ser	p.P130S	ENST00000343625	NM_022904.1	130	Ccc/Tcc	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR079																					ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt	0	
UTP20	27340		GRCh37	12	101776940	101776940	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR079																					ENST00000261637.4:c.7778C>G	p.Ala2593Gly	p.A2593G	ENST00000261637	NM_014503.2	2593	gCc/gGc	0	
SLC38A10	124565		GRCh37	17	79219882	79219882	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR079																					ENST00000374759.3:c.2834C>T	p.Ala945Val	p.A945V	ENST00000374759	NM_001037984.1	945	gCg/gTg	0	
EWSR1	2130		GRCh37	22	29669809	29669809	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR079																					ENST00000397938.2:c.182A>G	p.Tyr61Cys	p.Y61C	ENST00000397938	NM_001163286.1	61	tAt/tGt	0	
ZC3H3	23144		GRCh37	8	144621180	144621180	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR033																					ENST00000262577.5:c.357G>T	p.Gln119His	p.Q119H	ENST00000262577	NM_015117.2	119	caG/caT	0	
PTEN	5728		GRCh37	10	89711960	89711960	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR033																					ENST00000371953.3:c.578T>C	p.Leu193Pro	p.L193P	ENST00000371953	NM_000314.4	193	cTg/cCg	0	
HAO1	54363		GRCh37	20	7894976	7894976	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR033																					ENST00000378789.3:c.380G>A	p.Arg127His	p.R127H	ENST00000378789	NM_017545.2	127	cGt/cAt	0	
UPF3B	65109		GRCh37	X	118975204	118975204	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR033																					ENST00000276201.2:c.642G>C	p.Lys214Asn	p.K214N	ENST00000276201	NM_080632.2	214	aaG/aaC	0	
PTPRF	5792		GRCh37	1	44086246	44086246	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR090																					ENST00000359947.4:c.5360C>T	p.Ala1787Val	p.A1787V	ENST00000359947	NM_002840.3	1787	gCc/gTc	0	
SLC35F3	148641		GRCh37	1	234367265	234367265	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR090																					ENST00000366617.3:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000366617		60	cGg/cAg	0	
ALK	238		GRCh37	2	29519908	29519908	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR090																					ENST00000389048.3:c.1663C>A	p.Leu555Ile	p.L555I	ENST00000389048	NM_004304.4	555	Ctc/Atc	0	
ALS2CR11			GRCh37	2	202483705	202483705	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR090																					ENST00000286195.3:c.149C>T	p.Ser50Leu	p.S50L	ENST00000286195	NM_152525.5	50	tCg/tTg	0	
KBTBD12	166348		GRCh37	3	127642330	127642330	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR090																					ENST00000405109.1:c.426G>C	p.Gln142His	p.Q142H	ENST00000405109		142	caG/caC	0	
DDX41	51428		GRCh37	5	176943799	176943799	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR090																					ENST00000507955.1:c.65G>T	p.Arg22Leu	p.R22L	ENST00000507955	NM_016222.2	22	cGc/cTc	0	
POLH	5429		GRCh37	6	43581686	43581686	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR090																					ENST00000372236.4:c.1534T>C	p.Ser512Pro	p.S512P	ENST00000372236	NM_006502.2	512	Tca/Cca	0	
KCNQ5	56479		GRCh37	6	73751735	73751735	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR090																					ENST00000370398.1:c.566G>C	p.Arg189Thr	p.R189T	ENST00000370398	NM_019842.3	189	aGa/aCa	0	
TRPS1	7227		GRCh37	8	116426738	116426738	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR090																					ENST00000220888.5:c.3359C>T	p.Ser1120Phe	p.S1120F	ENST00000220888		1120	tCc/tTc	0	
ITGA8	8516		GRCh37	10	15701035	15701035	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR090																					ENST00000378076.3:c.911C>T	p.Thr304Met	p.T304M	ENST00000378076	NM_003638.1	304	aCg/aTg	0	
SLC22A10	387775		GRCh37	11	63057800	63057800	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR090																					ENST00000332793.6:c.163G>T	p.Asp55Tyr	p.D55Y	ENST00000332793	NM_001039752.3	55	Gac/Tac	0	
CS	1431		GRCh37	12	56667544	56667544	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR090																					ENST00000351328.3:c.1057A>T	p.Thr353Ser	p.T353S	ENST00000351328	NM_004077.2	353	Act/Tct	0	
ABCA8	10351		GRCh37	17	66914236	66914236	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR090																					ENST00000269080.2:c.1879G>A	p.Val627Met	p.V627M	ENST00000269080	NM_007168.2	627	Gtg/Atg	0	
NOTCH3	4854		GRCh37	19	15272119	15272119	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR090																					ENST00000263388.2:c.6320C>T	p.Ser2107Phe	p.S2107F	ENST00000263388	NM_000435.2	2107	tCc/tTc	0	
ZNF841	284371		GRCh37	19	52569710	52569710	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR090																					ENST00000426391.2:c.1077C>G	p.His359Gln	p.H359Q	ENST00000426391		359	caC/caG	0	
XK	7504		GRCh37	X	37553643	37553643	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR090																					ENST00000378616.3:c.350A>T	p.Glu117Val	p.E117V	ENST00000378616	NM_021083.2	117	gAg/gTg	0	
PHKA1	5255		GRCh37	X	71855025	71855025	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR090																					ENST00000373542.4:c.1694C>G	p.Pro565Arg	p.P565R	ENST00000373542	NM_002637.3	565	cCc/cGc	0	
PRAMEF2	65122		GRCh37	1	12919616	12919616	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR200																					ENST00000240189.2:c.356C>A	p.Ala119Asp	p.A119D	ENST00000240189	NM_023014.1	119	gCc/gAc	0	
MACF1	23499		GRCh37	1	39768597	39768597	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR200																					ENST00000372915.3:c.2651T>A	p.Ile884Asn	p.I884N	ENST00000372915		884	aTt/aAt	0	
TCHHL1	126637		GRCh37	1	152059932	152059932	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR200																					ENST00000368806.1:c.226G>C	p.Ala76Pro	p.A76P	ENST00000368806	NM_001008536.1	76	Gca/Cca	0	
FLG2	388698		GRCh37	1	152324485	152324485	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR200																					ENST00000388718.5:c.5777C>T	p.Thr1926Ile	p.T1926I	ENST00000388718	NM_001014342.2	1926	aCa/aTa	0	
TNR	7143		GRCh37	1	175335023	175335023	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR200																					ENST00000263525.2:c.2305G>C	p.Asp769His	p.D769H	ENST00000263525	NM_003285.2	769	Gat/Cat	0	
REN	5972		GRCh37	1	204129737	204129737	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR200																					ENST00000272190.8:c.443G>A	p.Arg148His	p.R148H	ENST00000272190	NM_000537.3	148	cGc/cAc	0	
OBSCN	84033		GRCh37	1	228560744	228560744	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR200																					ENST00000422127.1:c.22265T>C	p.Val7422Ala	p.V7422A	ENST00000422127	NM_001098623.2	7422	gTg/gCg	0	
TARBP1	6894		GRCh37	1	234607000	234607000	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR200																					ENST00000040877.1:c.1033C>T	p.His345Tyr	p.H345Y	ENST00000040877	NM_005646.3	345	Cat/Tat	0	
GGPS1	9453		GRCh37	1	235505404	235505404	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR200																					ENST00000282841.5:c.220C>A	p.Arg74Ser	p.R74S	ENST00000282841		74	Cgt/Agt	0	
PPP1CB	5500		GRCh37	2	28999833	28999833	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR200																					ENST00000296122.6:c.169C>A	p.Pro57Thr	p.P57T	ENST00000296122		57	Ccg/Acg	0	
ABCB6	10058		GRCh37	2	220078866	220078866	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR200																					ENST00000265316.3:c.1429C>T	p.Arg477Ter	p.R477*	ENST00000265316	NM_005689.2	477	Cga/Tga	0	
PARP9	83666		GRCh37	3	122259380	122259380	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR200																					ENST00000360356.2:c.1809G>A	p.Met603Ile	p.M603I	ENST00000360356	NM_001146102.1	603	atG/atA	0	
COL6A5	256076		GRCh37	3	130132926	130132926	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR200																					ENST00000312481.7:c.4712A>G	p.Asn1571Ser	p.N1571S	ENST00000312481		1571	aAt/aGt	0	
ING2	3622		GRCh37	4	184432105	184432105	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			brca_smc_2018_BR200																					ENST00000302327.3:c.843G>T	p.Ter281TyrextTer1	p.*281Yext*1	ENST00000302327	NM_001564.2	281	taG/taT	0	
HCN1	348980		GRCh37	5	45267305	45267305	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR200																					ENST00000303230.4:c.1669A>G	p.Thr557Ala	p.T557A	ENST00000303230	NM_021072.3	557	Aca/Gca	0	
GAPT	202309		GRCh37	5	57790413	57790413	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR200																					ENST00000318469.2:c.50C>T	p.Ser17Leu	p.S17L	ENST00000318469		17	tCg/tTg	0	
RASA1	5921		GRCh37	5	86629096	86629096	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			brca_smc_2018_BR200																					ENST00000274376.6:c.841A>T	p.Arg281Ter	p.R281*	ENST00000274376	NM_002890.2	281	Aga/Tga	0	
OR2W1	26692		GRCh37	6	29012441	29012441	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR200																					ENST00000377175.1:c.512A>C	p.Asn171Thr	p.N171T	ENST00000377175	NM_030903.3	171	aAc/aCc	0	
PPP1R10	5514		GRCh37	6	30574354	30574354	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR200																					ENST00000376511.2:c.525G>T	p.Leu175Phe	p.L175F	ENST00000376511	NM_002714.3	175	ttG/ttT	0	
SLC25A27	9481		GRCh37	6	46644134	46644134	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR200																					ENST00000371347.5:c.915G>C	p.Met305Ile	p.M305I	ENST00000371347	NM_004277.4	305	atG/atC	0	
SAMD9L	219285		GRCh37	7	92763366	92763366	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR200																					ENST00000318238.4:c.1919C>G	p.Ser640Cys	p.S640C	ENST00000318238	NM_152703.2	640	tCt/tGt	0	
TRRAP	8295		GRCh37	7	98608687	98608687	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR200																					ENST00000359863.4:c.10909A>G	p.Ile3637Val	p.I3637V	ENST00000359863	NM_001244580.1	3637	Atc/Gtc	0	
ZSCAN25	221785		GRCh37	7	99227444	99227444	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR200																					ENST00000334715.3:c.1436C>G	p.Ala479Gly	p.A479G	ENST00000334715		479	gCc/gGc	0	
FLNC	2318		GRCh37	7	128484232	128484232	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR200																					ENST00000325888.8:c.3104C>T	p.Pro1035Leu	p.P1035L	ENST00000325888	NM_001458.4	1035	cCc/cTc	0	
PREX2	80243		GRCh37	8	69143593	69143593	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR200																					ENST00000288368.4:c.4801C>G	p.Pro1601Ala	p.P1601A	ENST00000288368	NM_024870.2	1601	Ccc/Gcc	0	
RGS22	26166		GRCh37	8	100994325	100994325	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR200																					ENST00000360863.6:c.3200G>T	p.Cys1067Phe	p.C1067F	ENST00000360863	NM_015668.3	1067	tGt/tTt	0	
GLIS3	169792		GRCh37	9	4117827	4117827	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR200																					ENST00000324333.10:c.1186C>T	p.Arg396Cys	p.R396C	ENST00000324333	NM_152629.3	396	Cgc/Tgc	0	
EPB41L4B	54566		GRCh37	9	112017827	112017827	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR200																					ENST00000374566.3:c.1133C>T	p.Ser378Phe	p.S378F	ENST00000374566	NM_019114.3	378	tCc/tTc	0	
LIPJ	142910		GRCh37	10	90366559	90366559	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			brca_smc_2018_BR200																					ENST00000371939.3:c.996T>A	p.Tyr332Ter	p.Y332*	ENST00000371939	NM_001010939.2	332	taT/taA	0	
HTR7	3363		GRCh37	10	92508999	92508999	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR200																					ENST00000336152.3:c.892G>T	p.Glu298Ter	p.E298*	ENST00000336152	NM_019859.3	298	Gag/Tag	0	
METTL15	196074		GRCh37	11	28352283	28352283	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR200																					ENST00000407364.3:c.1119A>T	p.Leu373Phe	p.L373F	ENST00000407364		373	ttA/ttT	0	
INPPL1	3636		GRCh37	11	71939852	71939852	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR200																					ENST00000298229.2:c.479T>A	p.Leu160Gln	p.L160Q	ENST00000298229	NM_001567.3	160	cTg/cAg	0	
C1S	716		GRCh37	12	7169913	7169913	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR200																					ENST00000328916.3:c.140G>T	p.Gly47Val	p.G47V	ENST00000328916	NM_201442.2	47	gGg/gTg	0	
LRIG3	121227		GRCh37	12	59272859	59272859	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR200																					ENST00000320743.3:c.1830G>T	p.Met610Ile	p.M610I	ENST00000320743	NM_153377.4	610	atG/atT	0	
SCYL2	55681		GRCh37	12	100707253	100707253	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR200																					ENST00000360820.2:c.906A>C	p.Glu302Asp	p.E302D	ENST00000360820	NM_017988.4	302	gaA/gaC	0	
TMEM132C	92293		GRCh37	12	129189842	129189842	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR200																					ENST00000435159.2:c.2329G>A	p.Glu777Lys	p.E777K	ENST00000435159	NM_001136103.2	777	Gag/Aag	0	
CILP	8483		GRCh37	15	65491201	65491201	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR200																					ENST00000261883.4:c.1423A>G	p.Lys475Glu	p.K475E	ENST00000261883	NM_003613.3	475	Aag/Gag	0	
TP53	7157		GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR200																					ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt	0	
KRTAP29-1	100533177		GRCh37	17	39458296	39458296	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR200																					ENST00000391353.1:c.808C>T	p.Pro270Ser	p.P270S	ENST00000391353	NM_001257309.1	270	Cct/Tct	0	
DNAJC7	7266		GRCh37	17	40149183	40149183	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR200																					ENST00000457167.4:c.241G>A	p.Ala81Thr	p.A81T	ENST00000457167	NM_003315.3	81	Gct/Act	0	
COL1A1	1277		GRCh37	17	48268781	48268781	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR200																					ENST00000225964.5:c.2198G>A	p.Arg733His	p.R733H	ENST00000225964	NM_000088.3	733	cGt/cAt	0	
DSG1	1828		GRCh37	18	28935303	28935303	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR200																					ENST00000257192.4:c.3144C>G	p.Ser1048Arg	p.S1048R	ENST00000257192	NM_001942.2	1048	agC/agG	0	
ZNF846	162993		GRCh37	19	9875712	9875712	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			brca_smc_2018_BR200																					ENST00000397902.2:c.-85-1G>T		p.X29_splice	ENST00000397902	NM_001077624.1	29		0	
CPAMD8	27151		GRCh37	19	17038984	17038984	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR200																					ENST00000443236.1:c.3346C>G	p.Pro1116Ala	p.P1116A	ENST00000443236	NM_015692.2	1116	Cca/Gca	0	
NCAN	1463		GRCh37	19	19338411	19338411	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR200																					ENST00000252575.6:c.1982G>A	p.Gly661Asp	p.G661D	ENST00000252575	NM_004386.2	661	gGt/gAt	0	
KCNN4	3783		GRCh37	19	44271786	44271786	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR200																					ENST00000262888.3:c.1193C>A	p.Thr398Lys	p.T398K	ENST00000262888	NM_002250.2	398	aCg/aAg	0	
SOGA1	140710		GRCh37	20	35425953	35425953	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR200																					ENST00000237536.4:c.3363G>C	p.Trp1121Cys	p.W1121C	ENST00000237536	NM_080627.2	1121	tgG/tgC	0	
RPRD1B	58490		GRCh37	20	36668892	36668892	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR200																					ENST00000373433.4:c.207C>G	p.Asn69Lys	p.N69K	ENST00000373433	NM_021215.3	69	aaC/aaG	0	
MYBL2	4605		GRCh37	20	42340167	42340167	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR200																					ENST00000217026.4:c.1645C>G	p.Leu549Val	p.L549V	ENST00000217026	NM_002466.3	549	Ctg/Gtg	0	
ELF4	2000		GRCh37	X	129201087	129201087	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR200																					ENST00000308167.5:c.1601C>G	p.Pro534Arg	p.P534R	ENST00000308167	NM_001421.3	534	cCt/cGt	0	
ARHGEF16	27237		GRCh37	1	3394588	3394588	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR043																					ENST00000378378.4:c.1623G>C	p.Lys541Asn	p.K541N	ENST00000378378	NM_014448.3	541	aaG/aaC	0	
IFIH1	64135		GRCh37	2	163167409	163167409	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR043																					ENST00000263642.2:c.488G>T	p.Gly163Val	p.G163V	ENST00000263642	NM_022168.3	163	gGt/gTt	0	
NME6	10201		GRCh37	3	48336644	48336644	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR043																					ENST00000415053.1:c.315C>A	p.Phe105Leu	p.F105L	ENST00000415053		105	ttC/ttA	0	
ANTXR2	118429		GRCh37	4	80899214	80899214	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR043																					ENST00000307333.7:c.1294C>T	p.Arg432Ter	p.R432*	ENST00000307333	NM_001145794.1	432	Cga/Tga	0	
CAMK2D	817		GRCh37	4	114376945	114376945	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR043																					ENST00000342666.5:c.1466T>C	p.Phe489Ser	p.F489S	ENST00000342666		489	tTc/tCc	0	
C7	730		GRCh37	5	40964906	40964906	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR043																					ENST00000313164.9:c.1813C>A	p.Leu605Ile	p.L605I	ENST00000313164	NM_000587.2	605	Ctt/Att	0	
RGS7BP	401190		GRCh37	5	63890632	63890632	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR043																					ENST00000334025.2:c.559G>C	p.Asp187His	p.D187H	ENST00000334025	NM_001029875.2	187	Gat/Cat	0	
MBOAT1	154141		GRCh37	6	20152903	20152903	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR043																					ENST00000324607.7:c.197C>A	p.Ala66Glu	p.A66E	ENST00000324607	NM_001080480.2	66	gCg/gAg	0	
AC138647.1			GRCh37	8	142528384	142528384	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR043																					ENST00000427937.1:c.136C>A	p.His46Asn	p.H46N	ENST00000427937		46	Cat/Aat	0	
VAV2	7410		GRCh37	9	136654383	136654383	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR043																					ENST00000371850.3:c.1271A>C	p.Asp424Ala	p.D424A	ENST00000371850	NM_001134398.1	424	gAc/gCc	0	
OR5W2	390148		GRCh37	11	55681673	55681673	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR043																					ENST00000344514.1:c.386C>A	p.Pro129His	p.P129H	ENST00000344514	NM_001001960.1	129	cCc/cAc	0	
ZNF469	84627		GRCh37	16	88493891	88493891	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR043																					ENST00000437464.1:c.13C>G	p.Arg5Gly	p.R5G	ENST00000437464	NM_001127464.1	5	Cgc/Ggc	0	
SLC25A23	79085		GRCh37	19	6458319	6458319	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR043																					ENST00000301454.4:c.173G>A	p.Gly58Asp	p.G58D	ENST00000301454	NM_024103.2	58	gGt/gAt	0	
SMTN	6525		GRCh37	22	31495123	31495123	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR043																					ENST00000347557.2:c.2409G>C	p.Gln803His	p.Q803H	ENST00000347557	NM_001207017.1	803	caG/caC	0	
MICALL1	85377		GRCh37	22	38336750	38336750	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR043																					ENST00000215957.6:c.2505G>C	p.Lys835Asn	p.K835N	ENST00000215957	NM_033386.3	835	aaG/aaC	0	
KAL1			GRCh37	X	8555870	8555870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR043																					ENST00000262648.3:c.691G>T	p.Glu231Ter	p.E231*	ENST00000262648	NM_000216.2	231	Gaa/Taa	0	
SHROOM2	357		GRCh37	X	9912913	9912913	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR043																					ENST00000380913.3:c.4544C>T	p.Ala1515Val	p.A1515V	ENST00000380913	NM_001649.2	1515	gCc/gTc	0	
MUC12	10071		GRCh37	7	100638696	100638696	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR029																					ENST00000379442.3:c.5281T>G	p.Leu1761Val	p.L1761V	ENST00000379442		1761	Ttg/Gtg	0	
POLR3A	11128		GRCh37	10	79753083	79753083	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR029																					ENST00000372371.3:c.2659G>A	p.Asp887Asn	p.D887N	ENST00000372371	NM_007055.3	887	Gat/Aat	0	
PDE3B	5140		GRCh37	11	14810727	14810727	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR029																					ENST00000282096.4:c.1354C>A	p.Gln452Lys	p.Q452K	ENST00000282096	NM_000922.3	452	Cag/Aag	0	
PCDH8	5100		GRCh37	13	53421930	53421930	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR029																					ENST00000377942.3:c.642G>T	p.Glu214Asp	p.E214D	ENST00000377942	NM_002590.3	214	gaG/gaT	0	
AMZ2	51321		GRCh37	17	66247043	66247043	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR029																					ENST00000359904.3:c.392C>G	p.Pro131Arg	p.P131R	ENST00000359904	NM_016627.4	131	cCt/cGt	0	
CALR	811		GRCh37	19	13051185	13051185	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR029																					ENST00000316448.5:c.621G>C	p.Lys207Asn	p.K207N	ENST00000316448	NM_004343.3	207	aaG/aaC	0	
CYP2S1	29785		GRCh37	19	41709506	41709506	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR029																					ENST00000310054.4:c.1128G>A	p.Met376Ile	p.M376I	ENST00000310054	NM_030622.6	376	atG/atA	0	
DMD	1756		GRCh37	X	32456465	32456465	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR029																					ENST00000357033.4:c.3964C>T	p.Gln1322Ter	p.Q1322*	ENST00000357033	NM_004007.2	1322	Cag/Tag	0	
IMMT	10989		GRCh37	2	86371396	86371396	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR152																					ENST00000410111.3:c.2272G>C	p.Glu758Gln	p.E758Q	ENST00000410111	NM_001100169.1	758	Gag/Cag	0	
XIRP2	129446		GRCh37	2	167760066	167760066	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR152																					ENST00000409195.1:c.74A>G	p.Glu25Gly	p.E25G	ENST00000409195	NM_152381.5	25	gAg/gGg	0	
CPS1	1373		GRCh37	2	211454932	211454932	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR152																					ENST00000233072.5:c.814G>A	p.Glu272Lys	p.E272K	ENST00000233072	NM_001875.4	272	Gaa/Aaa	0	
STIM2	57620		GRCh37	4	27010447	27010447	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR152																					ENST00000467087.1:c.1312G>C	p.Glu438Gln	p.E438Q	ENST00000467087	NM_020860.3	438	Gag/Cag	0	
PCDHA9	9752		GRCh37	5	140229446	140229446	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR152																					ENST00000532602.1:c.1366G>A	p.Ala456Thr	p.A456T	ENST00000532602	NM_031857.1	456	Gcg/Acg	0	
TENM2	57451		GRCh37	5	167643890	167643890	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR152																					ENST00000518659.1:c.4196G>A	p.Arg1399Gln	p.R1399Q	ENST00000518659	NM_001122679.1	1399	cGg/cAg	0	
CDC5L	988		GRCh37	6	44371658	44371658	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR152																					ENST00000371477.3:c.652A>G	p.Lys218Glu	p.K218E	ENST00000371477	NM_001253.3	218	Aaa/Gaa	0	
NRG1	3084		GRCh37	8	32472070	32472070	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR152																					ENST00000405005.3:c.439T>C	p.Tyr147His	p.Y147H	ENST00000405005		147	Tat/Cat	0	
CCIN	881		GRCh37	9	36171028	36171028	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR152																					ENST00000335119.2:c.1529G>T	p.Ser510Ile	p.S510I	ENST00000335119	NM_005893.2	510	aGc/aTc	0	
CCAR1	55749		GRCh37	10	70546408	70546408	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR152																					ENST00000265872.6:c.2839G>T	p.Glu947Ter	p.E947*	ENST00000265872	NM_018237.2	947	Gaa/Taa	0	
HKDC1	80201		GRCh37	10	71018640	71018640	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR152																					ENST00000354624.5:c.2141A>T	p.Asn714Ile	p.N714I	ENST00000354624	NM_025130.3	714	aAt/aTt	0	
METTL15	196074		GRCh37	11	28135005	28135005	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR152																					ENST00000407364.3:c.124G>A	p.Glu42Lys	p.E42K	ENST00000407364		42	Gaa/Aaa	0	
CCDC41			GRCh37	12	94727277	94727277	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR152																					ENST00000397809.5:c.1558G>A	p.Ala520Thr	p.A520T	ENST00000397809	NM_016122.2	520	Gcg/Acg	0	
ZNF81	347344		GRCh37	X	47705686	47705686	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR152																					ENST00000338637.7:c.20C>T	p.Ala7Val	p.A7V	ENST00000338637	NM_007137.3	7	gCt/gTt	0	
DEDD	9191		GRCh37	1	161092162	161092162	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR037																					ENST00000368006.3:c.732C>G	p.Ile244Met	p.I244M	ENST00000368006	NM_032998.2	244	atC/atG	0	
STON1	11037		GRCh37	2	48808988	48808988	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR037																					ENST00000309835.3:c.1216C>A	p.Pro406Thr	p.P406T	ENST00000309835		406	Cca/Aca	0	
RAPGEF2	9693		GRCh37	4	160264489	160264489	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR037																					ENST00000264431.4:c.2704A>G	p.Lys902Glu	p.K902E	ENST00000264431	NM_014247.2	902	Aaa/Gaa	0	
CCNO	10309		GRCh37	5	54529308	54529308	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR037																					ENST00000282572.4:c.44G>A	p.Arg15Gln	p.R15Q	ENST00000282572	NM_021147.3	15	cGa/cAa	0	
TMEM171	134285		GRCh37	5	72419402	72419402	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR037																					ENST00000454765.2:c.202G>A	p.Val68Met	p.V68M	ENST00000454765		68	Gtg/Atg	0	
HIVEP2	3097		GRCh37	6	143093689	143093689	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR037																					ENST00000012134.2:c.2187C>A	p.Asp729Glu	p.D729E	ENST00000012134		729	gaC/gaA	0	
PHF14	9678		GRCh37	7	11022107	11022107	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR037																					ENST00000403050.3:c.221T>C	p.Ile74Thr	p.I74T	ENST00000403050	NM_014660.3	74	aTt/aCt	0	
NOS3	4846		GRCh37	7	150707688	150707688	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR037																					ENST00000297494.3:c.2689C>A	p.Pro897Thr	p.P897T	ENST00000297494	NM_000603.4	897	Ccc/Acc	0	
KCNS2	3788		GRCh37	8	99440331	99440331	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR037																					ENST00000287042.4:c.124C>T	p.Arg42Cys	p.R42C	ENST00000287042	NM_020697.2	42	Cgc/Tgc	0	
SLC2A13	114134		GRCh37	12	40422168	40422168	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR037																					ENST00000280871.4:c.860C>T	p.Thr287Ile	p.T287I	ENST00000280871	NM_052885.3	287	aCc/aTc	0	
ARID1A	8289		GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR063																					ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag	0	
BRINP3	339479		GRCh37	1	190234069	190234069	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR063																					ENST00000367462.3:c.544G>A	p.Ala182Thr	p.A182T	ENST00000367462	NM_199051.1	182	Gct/Act	0	
GK2	2712		GRCh37	4	80328267	80328267	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR063																					ENST00000358842.3:c.1088C>A	p.Ala363Asp	p.A363D	ENST00000358842	NM_033214.2	363	gCc/gAc	0	
FABP6	2172		GRCh37	5	159640804	159640804	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR063																					ENST00000393980.4:c.113T>G	p.Met38Arg	p.M38R	ENST00000393980	NM_001130958.1	38	aTg/aGg	0	
CSMD1	64478		GRCh37	8	3015448	3015448	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR063																					ENST00000537824.1:c.5885G>A	p.Arg1962His	p.R1962H	ENST00000537824	NM_033225.5	1962	cGt/cAt	0	
TMEM246	84302		GRCh37	9	104238341	104238341	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR063																					ENST00000374847.1:c.1034G>A	p.Arg345His	p.R345H	ENST00000374847		345	cGc/cAc	0	
MTMR2	8898		GRCh37	11	95582948	95582948	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR063																					ENST00000346299.5:c.883C>T	p.Arg295Ter	p.R295*	ENST00000346299	NM_016156.5	295	Cga/Tga	0	
GCN1L1			GRCh37	12	120568529	120568529	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR063																					ENST00000300648.6:c.7592G>T	p.Gly2531Val	p.G2531V	ENST00000300648	NM_006836.1	2531	gGc/gTc	0	
GMPR2	51292		GRCh37	14	24702727	24702727	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR063																					ENST00000355299.4:c.130A>C	p.Thr44Pro	p.T44P	ENST00000355299	NM_001002000.1	44	Aca/Cca	0	
SIX6	4990		GRCh37	14	60977951	60977951	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR063																					ENST00000327720.5:c.722A>G	p.Asp241Gly	p.D241G	ENST00000327720	NM_007374.2	241	gAc/gGc	0	
NPAP1	23742		GRCh37	15	24921147	24921147	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR063																					ENST00000329468.2:c.133C>T	p.Arg45Cys	p.R45C	ENST00000329468	NM_018958.2	45	Cgc/Tgc	0	
ABR	29		GRCh37	17	975876	975876	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR063																					ENST00000302538.5:c.872C>T	p.Ala291Val	p.A291V	ENST00000302538	NM_021962.3	291	gCa/gTa	0	
SGSM2	9905		GRCh37	17	2266187	2266187	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR063																					ENST00000426855.2:c.514G>A	p.Ala172Thr	p.A172T	ENST00000426855	NM_001098509.1	172	Gcc/Acc	0	
C17orf47	284083		GRCh37	17	56620875	56620875	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR063																					ENST00000321691.3:c.673C>G	p.Leu225Val	p.L225V	ENST00000321691	NM_001038704.2	225	Cta/Gta	0	
C17orf47	284083		GRCh37	17	56620941	56620941	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR063																					ENST00000321691.3:c.607C>T	p.Gln203Ter	p.Q203*	ENST00000321691	NM_001038704.2	203	Caa/Taa	0	
ITSN1	6453		GRCh37	21	35257746	35257746	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR063																					ENST00000381318.3:c.4763G>A	p.Arg1588His	p.R1588H	ENST00000381318	NM_003024.2	1588	cGt/cAt	0	
SLC6A1	6529		GRCh37	3	11067498	11067498	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR114																					ENST00000287766.4:c.889G>A	p.Gly297Arg	p.G297R	ENST00000287766	NM_003042.3	297	Ggg/Agg	0	
LAMA4	3910		GRCh37	6	112469515	112469515	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR114																					ENST00000230538.7:c.2197C>G	p.Gln733Glu	p.Q733E	ENST00000230538	NM_001105206.2	733	Cag/Gag	0	
ZFAND5	7763		GRCh37	9	74975567	74975567	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR114																					ENST00000237937.3:c.128A>G	p.Asn43Ser	p.N43S	ENST00000237937	NM_006007.3	43	aAt/aGt	0	
OR4D10	390197		GRCh37	11	59245449	59245449	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR114																					ENST00000530162.1:c.547C>T	p.Arg183Trp	p.R183W	ENST00000530162	NM_001004705.1	183	Cgg/Tgg	0	
ADAMTS8	11095		GRCh37	11	130297633	130297633	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR114																					ENST00000257359.6:c.549G>T	p.Gln183His	p.Q183H	ENST00000257359	NM_007037.4	183	caG/caT	0	
GPT2	84706		GRCh37	16	46943627	46943627	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR114																					ENST00000340124.4:c.608G>A	p.Gly203Asp	p.G203D	ENST00000340124	NM_133443.2	203	gGc/gAc	0	
EXOC7	23265		GRCh37	17	74079793	74079793	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR114																					ENST00000335146.7:c.2144A>T	p.Tyr715Phe	p.Y715F	ENST00000335146		715	tAc/tTc	0	
CACNA1A	773		GRCh37	19	13340959	13340959	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR114																					ENST00000360228.5:c.5465T>A	p.Ile1822Asn	p.I1822N	ENST00000360228	NM_001127222.1	1822	aTc/aAc	0	
KLHL34	257240		GRCh37	X	21675272	21675272	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR114																					ENST00000379499.2:c.635G>T	p.Arg212Leu	p.R212L	ENST00000379499	NM_153270.1	212	cGc/cTc	0	
PCDH19	57526		GRCh37	X	99663001	99663001	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR114																					ENST00000373034.4:c.595G>A	p.Glu199Lys	p.E199K	ENST00000373034	NM_001184880.1	199	Gag/Aag	0	
SPSB1	80176		GRCh37	1	9416111	9416111	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR100																					ENST00000328089.6:c.161A>G	p.His54Arg	p.H54R	ENST00000328089	NM_025106.3	54	cAt/cGt	0	
COL8A2	1296		GRCh37	1	36564970	36564970	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR100																					ENST00000303143.4:c.312G>T	p.Lys104Asn	p.K104N	ENST00000303143	NM_005202.2	104	aaG/aaT	0	
BRDT	676		GRCh37	1	92470026	92470026	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR100																					ENST00000362005.3:c.2444C>A	p.Pro815Gln	p.P815Q	ENST00000362005	NM_001242805.1	815	cCa/cAa	0	
ABCA4	24		GRCh37	1	94496562	94496562	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR100																					ENST00000370225.3:c.4243A>C	p.Thr1415Pro	p.T1415P	ENST00000370225	NM_000350.2	1415	Acc/Ccc	0	
TRAF5	7188		GRCh37	1	211527753	211527753	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR100																					ENST00000261464.5:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000261464	NM_001033910.2	74	Gaa/Caa	0	
ZNF142	7701		GRCh37	2	219510893	219510893	+	splice_donor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BR100																					ENST00000411696.2:c.1451+1G>C		p.X484_splice	ENST00000411696		484		0	
PIK3CB	5291		GRCh37	3	138376566	138376566	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR100																					ENST00000289153.2:c.2908C>G	p.Gln970Glu	p.Q970E	ENST00000289153	NM_006219.2	970	Caa/Gaa	0	
JAKMIP1	152789		GRCh37	4	6062202	6062202	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR100																					ENST00000282924.5:c.1593G>T	p.Arg531Ser	p.R531S	ENST00000282924	NM_144720.3	531	agG/agT	0	
CLPTM1L	81037		GRCh37	5	1344840	1344840	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR100																					ENST00000320895.5:c.117C>G	p.Asp39Glu	p.D39E	ENST00000320895	NM_030782.3	39	gaC/gaG	0	
LNPEP	4012		GRCh37	5	96350726	96350726	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR100																					ENST00000231368.5:c.2303C>T	p.Ala768Val	p.A768V	ENST00000231368	NM_005575.2	768	gCc/gTc	0	
PCDHB2	56133		GRCh37	5	140476607	140476607	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR100																					ENST00000194155.4:c.2233G>T	p.Gly745Trp	p.G745W	ENST00000194155	NM_018936.2	745	Ggg/Tgg	0	
MDN1	23195		GRCh37	6	90491136	90491136	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR100																					ENST00000369393.3:c.1625G>T	p.Gly542Val	p.G542V	ENST00000369393		542	gGa/gTa	0	
RADIL	55698		GRCh37	7	4874717	4874717	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR100																					ENST00000399583.3:c.937G>T	p.Gly313Trp	p.G313W	ENST00000399583	NM_018059.4	313	Ggg/Tgg	0	
COL1A2	1278		GRCh37	7	94043047	94043047	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR100																					ENST00000297268.6:c.1603G>T	p.Gly535Ter	p.G535*	ENST00000297268	NM_000089.3	535	Gga/Tga	0	
COL1A2	1278		GRCh37	7	94043048	94043048	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR100																					ENST00000297268.6:c.1604G>T	p.Gly535Val	p.G535V	ENST00000297268	NM_000089.3	535	gGa/gTa	0	
STAG3	10734		GRCh37	7	99799481	99799481	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR100																					ENST00000317296.5:c.2293G>A	p.Ala765Thr	p.A765T	ENST00000317296	NM_012447.2	765	Gct/Act	0	
MET	4233		GRCh37	7	116435752	116435752	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR100																					ENST00000397752.3:c.3842C>A	p.Ala1281Asp	p.A1281D	ENST00000397752	NM_000245.2	1281	gCc/gAc	0	
KMT2C	58508		GRCh37	7	151945343	151945343	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR100																					ENST00000262189.6:c.2176C>A	p.Gln726Lys	p.Q726K	ENST00000262189	NM_170606.2	726	Cag/Aag	0	
TACC1	6867		GRCh37	8	38677085	38677085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR100																					ENST00000317827.4:c.323A>G	p.Lys108Arg	p.K108R	ENST00000317827	NM_006283.2	108	aAa/aGa	0	
HNF4G	3174		GRCh37	8	76471262	76471262	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR100																					ENST00000354370.1:c.972G>T	p.Met324Ile	p.M324I	ENST00000354370		324	atG/atT	0	
FZD6	8323		GRCh37	8	104336996	104336996	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			brca_smc_2018_BR100																					ENST00000358755.4:c.662T>A	p.Leu221Ter	p.L221*	ENST00000358755	NM_001164616.1	221	tTa/tAa	0	
ENY2	56943		GRCh37	8	110348432	110348432	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR100																					ENST00000521688.1:c.82C>T	p.Arg28Cys	p.R28C	ENST00000521688	NM_020189.5	28	Cgc/Tgc	0	
AFAP1L2	84632		GRCh37	10	116059077	116059077	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR100																					ENST00000304129.4:c.2055C>A	p.His685Gln	p.H685Q	ENST00000304129	NM_001287824.1	685	caC/caA	0	
DMBT1	1755		GRCh37	10	124399743	124399743	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR100																					ENST00000338354.3:c.6743T>C	p.Val2248Ala	p.V2248A	ENST00000338354		2248	gTc/gCc	0	
PCNXL3			GRCh37	11	65384954	65384954	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR100																					ENST00000355703.3:c.455G>T	p.Arg152Leu	p.R152L	ENST00000355703	NM_032223.2	152	cGa/cTa	0	
KIRREL3	84623		GRCh37	11	126319030	126319030	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR100																					ENST00000525144.2:c.871A>T	p.Ile291Phe	p.I291F	ENST00000525144	NM_032531.3	291	Atc/Ttc	0	
TMEM45B	120224		GRCh37	11	129724564	129724564	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR100																					ENST00000281441.3:c.238C>A	p.His80Asn	p.H80N	ENST00000281441	NM_138788.3	80	Cac/Aac	0	
LRP1	4035		GRCh37	12	57548266	57548266	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR100																					ENST00000243077.3:c.1009G>T	p.Val337Leu	p.V337L	ENST00000243077	NM_002332.2	337	Gtg/Ttg	0	
SLC7A7	9056		GRCh37	14	23248137	23248137	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR100																					ENST00000285850.7:c.635C>T	p.Thr212Ile	p.T212I	ENST00000285850		212	aCt/aTt	0	
DISP2	85455		GRCh37	15	40656116	40656116	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR100																					ENST00000267889.3:c.410G>A	p.Trp137Ter	p.W137*	ENST00000267889	NM_033510.1	137	tGg/tAg	0	
CIB2	10518		GRCh37	15	78397654	78397654	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			brca_smc_2018_BR100																					ENST00000258930.3:c.563G>C	p.Ter188SerextTer58	p.*188Sext*58	ENST00000258930	NM_006383.3	188	tGa/tCa	0	
IL21R	50615		GRCh37	16	27448849	27448849	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR100																					ENST00000337929.3:c.193T>A	p.Cys65Ser	p.C65S	ENST00000337929	NM_181078.2	65	Tgc/Agc	0	
ZCCHC14	23174		GRCh37	16	87448040	87448040	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR100																					ENST00000268616.4:c.1172G>T	p.Gly391Val	p.G391V	ENST00000268616	NM_015144.2	391	gGg/gTg	0	
TP53	7157		GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR100																					ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt	0	
MFSD11	79157		GRCh37	17	74738077	74738077	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR100																					ENST00000336509.4:c.287C>T	p.Pro96Leu	p.P96L	ENST00000336509	NM_001242533.1	96	cCt/cTt	0	
C17orf62			GRCh37	17	80405459	80405459	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR100																					ENST00000306645.5:c.124G>C	p.Gly42Arg	p.G42R	ENST00000306645	NM_001033046.3	42	Gga/Cga	0	
ZNF516	9658		GRCh37	18	74091773	74091773	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR100																					ENST00000443185.2:c.2297G>C	p.Ser766Thr	p.S766T	ENST00000443185	NM_014643.3	766	aGc/aCc	0	
CCDC105	126402		GRCh37	19	15132255	15132255	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR100																					ENST00000292574.3:c.965G>A	p.Arg322Gln	p.R322Q	ENST00000292574	NM_173482.2	322	cGg/cAg	0	
KCNJ14	3770		GRCh37	19	48965262	48965262	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR100																					ENST00000342291.2:c.281C>T	p.Ser94Phe	p.S94F	ENST00000342291	NM_013348.3	94	tCc/tTc	0	
LCA5L	150082		GRCh37	21	40778053	40778053	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR100																					ENST00000288350.3:c.1768A>G	p.Thr590Ala	p.T590A	ENST00000288350		590	Act/Gct	0	
RSPH1	89765		GRCh37	21	43906550	43906550	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR100																					ENST00000291536.3:c.296G>C	p.Arg99Pro	p.R99P	ENST00000291536	NM_080860.2	99	cGg/cCg	0	
PHKA2	5256		GRCh37	X	18956802	18956802	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR100																					ENST00000379942.4:c.984G>T	p.Trp328Cys	p.W328C	ENST00000379942	NM_000292.2	328	tgG/tgT	0	
WDR44	54521		GRCh37	X	117540897	117540897	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR100																					ENST00000254029.3:c.1441A>G	p.Arg481Gly	p.R481G	ENST00000254029	NM_019045.4	481	Aga/Gga	0	
DCAF6	55827		GRCh37	1	167944114	167944114	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR107																					ENST00000312263.6:c.299C>T	p.Ala100Val	p.A100V	ENST00000312263	NM_001017977.2	100	gCa/gTa	0	
ST6GAL2	84620		GRCh37	2	107423228	107423228	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR107																					ENST00000361686.4:c.1496C>T	p.Thr499Met	p.T499M	ENST00000361686	NM_032528.2	499	aCg/aTg	0	
TTN	7273		GRCh37	2	179581899	179581899	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR107																					ENST00000591111.1:c.24611G>A	p.Gly8204Asp	p.G8204D	ENST00000591111		8204	gGc/gAc	0	
PIK3CA	5290		GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR107																					ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag	0	
PKD2L2	27039		GRCh37	5	137226254	137226254	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			brca_smc_2018_BR107																					ENST00000508883.1:c.116T>A	p.Leu39Ter	p.L39*	ENST00000508883		39	tTa/tAa	0	
MACC1	346389		GRCh37	7	20199295	20199295	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BR107																					ENST00000332878.4:c.689C>G	p.Ser230Ter	p.S230*	ENST00000332878		230	tCa/tGa	0	
ARHGEF17	9828		GRCh37	11	73022813	73022813	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR107																					ENST00000263674.3:c.3130G>A	p.Glu1044Lys	p.E1044K	ENST00000263674	NM_014786.3	1044	Gag/Aag	0	
NAA25	80018		GRCh37	12	112485524	112485524	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR107																					ENST00000261745.4:c.1951G>C	p.Asp651His	p.D651H	ENST00000261745	NM_024953.3	651	Gat/Cat	0	
LRCH1	23143		GRCh37	13	47279426	47279426	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR107																					ENST00000389798.3:c.1514C>G	p.Ser505Cys	p.S505C	ENST00000389798	NM_015116.2	505	tCt/tGt	0	
CYLD	1540		GRCh37	16	50826521	50826521	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR107																					ENST00000311559.9:c.2255T>C	p.Leu752Pro	p.L752P	ENST00000311559	NM_015247.2	752	cTg/cCg	0	
CNOT1	23019		GRCh37	16	58583726	58583726	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR107																					ENST00000317147.5:c.3419G>C	p.Ser1140Thr	p.S1140T	ENST00000317147	NM_016284.4	1140	aGt/aCt	0	
SCRN2	90507		GRCh37	17	45916908	45916908	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR107																					ENST00000290216.9:c.458C>A	p.Ala153Glu	p.A153E	ENST00000290216	NM_001145023.1	153	gCg/gAg	0	
SLC10A3	8273		GRCh37	X	153716419	153716419	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR107																					ENST00000263512.4:c.861G>A	p.Met287Ile	p.M287I	ENST00000263512	NM_019848.3	287	atG/atA	0	
SZT2	23334		GRCh37	1	43896310	43896310	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR164																					ENST00000562955.1:c.4453G>C	p.Asp1485His	p.D1485H	ENST00000562955	NM_015284.3	1485	Gac/Cac	0	
PSMA5	5686		GRCh37	1	109957875	109957875	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR164																					ENST00000271308.4:c.207G>C	p.Glu69Asp	p.E69D	ENST00000271308	NM_002790.3	69	gaG/gaC	0	
GOLPH3L	55204		GRCh37	1	150636116	150636116	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR164																					ENST00000271732.3:c.307G>C	p.Asp103His	p.D103H	ENST00000271732	NM_018178.5	103	Gac/Cac	0	
CFH	3075		GRCh37	1	196682868	196682868	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR164																					ENST00000367429.4:c.1340C>T	p.Thr447Ile	p.T447I	ENST00000367429	NM_000186.3	447	aCa/aTa	0	
PPP1R12B	4660		GRCh37	1	202399884	202399884	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR164																					ENST00000608999.1:c.947A>G	p.Asn316Ser	p.N316S	ENST00000608999	NM_002481.3	316	aAt/aGt	0	
ETAA1	54465		GRCh37	2	67624758	67624758	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR164																					ENST00000272342.5:c.178G>C	p.Glu60Gln	p.E60Q	ENST00000272342	NM_019002.3	60	Gag/Cag	0	
REG3G	130120		GRCh37	2	79254934	79254934	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR164																					ENST00000272324.5:c.335G>T	p.Gly112Val	p.G112V	ENST00000272324	NM_001008387.2	112	gGc/gTc	0	
ZRANB3	84083		GRCh37	2	135985480	135985480	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR164																					ENST00000264159.6:c.2060A>C	p.Gln687Pro	p.Q687P	ENST00000264159	NM_032143.2	687	cAa/cCa	0	
TMEM194B			GRCh37	2	191390057	191390057	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR164																					ENST00000409150.3:c.145G>C	p.Glu49Gln	p.E49Q	ENST00000409150	NM_001142645.1	49	Gag/Cag	0	
PLSCR4	57088		GRCh37	3	145938652	145938652	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR164																					ENST00000354952.2:c.68C>A	p.Pro23Gln	p.P23Q	ENST00000354952	NM_020353.2	23	cCa/cAa	0	
GALNT7	51809		GRCh37	4	174169453	174169453	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR164																					ENST00000265000.4:c.449G>C	p.Gly150Ala	p.G150A	ENST00000265000	NM_017423.2	150	gGa/gCa	0	
PSD2	84249		GRCh37	5	139217273	139217273	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR164																					ENST00000274710.3:c.1729C>A	p.His577Asn	p.H577N	ENST00000274710	NM_032289.2	577	Cac/Aac	0	
CDHR2	54825		GRCh37	5	176002525	176002525	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR164																					ENST00000261944.5:c.787G>T	p.Val263Leu	p.V263L	ENST00000261944	NM_017675.4	263	Gtg/Ttg	0	
PPARD	5467		GRCh37	6	35393750	35393750	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR164																					ENST00000311565.4:c.1220G>A	p.Arg407Gln	p.R407Q	ENST00000311565	NM_001171818.1	407	cGg/cAg	0	
AHI1	54806		GRCh37	6	135754248	135754248	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR164																					ENST00000265602.6:c.2183A>C	p.Glu728Ala	p.E728A	ENST00000265602	NM_001134831.1	728	gAg/gCg	0	
AEBP1	165		GRCh37	7	44151804	44151804	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR164																					ENST00000223357.3:c.2101G>T	p.Asp701Tyr	p.D701Y	ENST00000223357	NM_001129.4	701	Gat/Tat	0	
FOXP2	93986		GRCh37	7	114282669	114282669	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR164																					ENST00000350908.4:c.980G>A	p.Arg327Lys	p.R327K	ENST00000350908		327	aGa/aAa	0	
FLNC	2318		GRCh37	7	128470810	128470810	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR164																					ENST00000325888.8:c.119A>C	p.Asn40Thr	p.N40T	ENST00000325888	NM_001458.4	40	aAc/aCc	0	
CSMD1	64478		GRCh37	8	2800072	2800072	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR164																					ENST00000537824.1:c.10457G>C	p.Gly3486Ala	p.G3486A	ENST00000537824	NM_033225.5	3486	gGc/gCc	0	
CSPP1	79848		GRCh37	8	67986587	67986587	+	splice_donor_variant	Splice_Site	SNP	G	G	T			brca_smc_2018_BR164																					ENST00000262210.5:c.207+1G>T		p.X69_splice	ENST00000262210	NM_024790.6	69		0	
UBR5	51366		GRCh37	8	103307970	103307970	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR164																					ENST00000520539.1:c.3706G>C	p.Glu1236Gln	p.E1236Q	ENST00000520539	NM_015902.5	1236	Gag/Cag	0	
COL27A1	85301		GRCh37	9	117027701	117027701	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			brca_smc_2018_BR164																					ENST00000356083.3:c.3340-1G>T		p.X1114_splice	ENST00000356083	NM_032888.2	1114		0	
SLC18A3	6572		GRCh37	10	50820350	50820350	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR164																					ENST00000374115.3:c.1564G>A	p.Glu522Lys	p.E522K	ENST00000374115	NM_003055.2	522	Gag/Aag	0	
ARHGEF17	9828		GRCh37	11	73022430	73022430	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR164																					ENST00000263674.3:c.2747G>A	p.Arg916Lys	p.R916K	ENST00000263674	NM_014786.3	916	aGg/aAg	0	
TRIM64B	642446		GRCh37	11	89603964	89603964	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR164																					ENST00000329862.6:c.1175C>A	p.Ser392Tyr	p.S392Y	ENST00000329862	NM_001164397.1	392	tCt/tAt	0	
TAS2R9	50835		GRCh37	12	10962139	10962139	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR164																					ENST00000240691.2:c.536A>G	p.Lys179Arg	p.K179R	ENST00000240691	NM_023917.2	179	aAa/aGa	0	
STAB2	55576		GRCh37	12	104069734	104069734	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR164																					ENST00000388887.2:c.2581G>T	p.Asp861Tyr	p.D861Y	ENST00000388887	NM_017564.9	861	Gat/Tat	0	
HECTD4	283450		GRCh37	12	112676962	112676962	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR164																					ENST00000550722.1:c.4746G>C	p.Glu1582Asp	p.E1582D	ENST00000550722	NM_001109662.3	1582	gaG/gaC	0	
B3GNT4	79369		GRCh37	12	122691684	122691684	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR164																					ENST00000324189.4:c.886G>A	p.Glu296Lys	p.E296K	ENST00000324189	NM_030765.2	296	Gaa/Aaa	0	
TMEM132C	92293		GRCh37	12	129190722	129190722	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR164																					ENST00000435159.2:c.3209C>T	p.Thr1070Met	p.T1070M	ENST00000435159	NM_001136103.2	1070	aCg/aTg	0	
GRTP1	79774		GRCh37	13	113979989	113979989	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR164																					ENST00000375431.4:c.908A>G	p.His303Arg	p.H303R	ENST00000375431	NM_024719.2	303	cAc/cGc	0	
STARD9	57519		GRCh37	15	42985550	42985550	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR164																					ENST00000290607.7:c.11774C>A	p.Thr3925Asn	p.T3925N	ENST00000290607	NM_020759.2	3925	aCt/aAt	0	
DAPK2	23604		GRCh37	15	64231463	64231463	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR164																					ENST00000261891.3:c.551T>A	p.Phe184Tyr	p.F184Y	ENST00000261891		184	tTt/tAt	0	
ZC3H7A	29066		GRCh37	16	11868197	11868197	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR164																					ENST00000355758.4:c.798G>A	p.Met266Ile	p.M266I	ENST00000355758	NM_014153.3	266	atG/atA	0	
HYDIN	54768		GRCh37	16	71149676	71149676	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BR164																					ENST00000393567.2:c.1250C>G	p.Ser417Ter	p.S417*	ENST00000393567	NM_001270974.1	417	tCa/tGa	0	
ABCA6	23460		GRCh37	17	67085636	67085636	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR164																					ENST00000284425.2:c.3576G>C	p.Leu1192Phe	p.L1192F	ENST00000284425	NM_080284.2	1192	ttG/ttC	0	
NFIX	4784		GRCh37	19	13184732	13184732	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR164																					ENST00000592199.1:c.710C>T	p.Thr237Ile	p.T237I	ENST00000592199		237	aCa/aTa	0	
SAE1	10055		GRCh37	19	47653588	47653588	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR164																					ENST00000270225.7:c.340G>T	p.Asp114Tyr	p.D114Y	ENST00000270225	NM_005500.2	114	Gat/Tat	0	
DIP2A	23181		GRCh37	21	47969751	47969751	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR164																					ENST00000417564.2:c.2590G>C	p.Asp864His	p.D864H	ENST00000417564		864	Gat/Cat	0	
ATXN10	25814		GRCh37	22	46202857	46202857	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR164																					ENST00000252934.5:c.1192A>G	p.Ile398Val	p.I398V	ENST00000252934	NM_013236.3	398	Atc/Gtc	0	
YY2	404281		GRCh37	X	21875415	21875415	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR164																					ENST00000429584.2:c.813G>A	p.Met271Ile	p.M271I	ENST00000429584	NM_206923.3	271	atG/atA	0	
IQSEC2	23096		GRCh37	X	53280216	53280216	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR164																					ENST00000396435.3:c.1542T>A	p.Ser514Arg	p.S514R	ENST00000396435	NM_001111125.2	514	agT/agA	0	
GPRASP2	114928		GRCh37	X	101970582	101970582	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR164																					ENST00000332262.5:c.785A>T	p.His262Leu	p.H262L	ENST00000332262	NM_138437.5	262	cAt/cTt	0	
AMOT	154796		GRCh37	X	112022771	112022771	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR164																					ENST00000371959.3:c.2611G>T	p.Glu871Ter	p.E871*	ENST00000371959	NM_001113490.1	871	Gaa/Taa	0	
THOC2	57187		GRCh37	X	122755059	122755059	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR164																					ENST00000245838.8:c.4165G>A	p.Gly1389Arg	p.G1389R	ENST00000245838	NM_001081550.1	1389	Ggg/Agg	0	
LCA10			GRCh37	X	153149689	153149689	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR164																					ENST00000452593.1:c.520C>A	p.Pro174Gln	p.P174Q	ENST00000452593		174	cCa/cAa	0	
NEGR1	257194		GRCh37	1	72163820	72163820	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR091																					ENST00000357731.5:c.538A>C	p.Lys180Gln	p.K180Q	ENST00000357731	NM_173808.2	180	Aaa/Caa	0	
SV2A	9900		GRCh37	1	149879652	149879652	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR091																					ENST00000369146.3:c.1486A>G	p.Thr496Ala	p.T496A	ENST00000369146	NM_014849.4	496	Act/Gct	0	
FMO4	2329		GRCh37	1	171292228	171292228	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR091																					ENST00000367749.3:c.218C>G	p.Pro73Arg	p.P73R	ENST00000367749	NM_002022.1	73	cCt/cGt	0	
RGSL1	353299		GRCh37	1	182517938	182517938	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR091																					ENST00000294854.8:c.2912T>C	p.Val971Ala	p.V971A	ENST00000294854	NM_001137669.1	971	gTt/gCt	0	
RNASEL	6041		GRCh37	1	182554766	182554766	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR091																					ENST00000367559.3:c.1176G>C	p.Lys392Asn	p.K392N	ENST00000367559	NM_021133.3	392	aaG/aaC	0	
TP53BP2	7159		GRCh37	1	223990007	223990007	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR091																					ENST00000343537.7:c.1036G>C	p.Ala346Pro	p.A346P	ENST00000343537	NM_001031685.2	346	Gcc/Ccc	0	
GNPAT	8443		GRCh37	1	231401081	231401081	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR091																					ENST00000366647.4:c.611C>T	p.Ser204Leu	p.S204L	ENST00000366647	NM_014236.3	204	tCg/tTg	0	
TARBP1	6894		GRCh37	1	234529572	234529572	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR091																					ENST00000040877.1:c.4255G>T	p.Val1419Phe	p.V1419F	ENST00000040877	NM_005646.3	1419	Gtc/Ttc	0	
GRHL1	29841		GRCh37	2	10136095	10136095	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR091																					ENST00000324907.9:c.1588A>G	p.Arg530Gly	p.R530G	ENST00000324907	NM_198182.2	530	Aga/Gga	0	
ITSN2	50618		GRCh37	2	24533543	24533543	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR091																					ENST00000355123.4:c.371A>G	p.Asn124Ser	p.N124S	ENST00000355123	NM_006277.2	124	aAt/aGt	0	
CAD	790		GRCh37	2	27464223	27464223	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR091																					ENST00000264705.4:c.5842C>T	p.Arg1948Cys	p.R1948C	ENST00000264705	NM_004341.3	1948	Cgt/Tgt	0	
CCDC104			GRCh37	2	55749300	55749300	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR091																					ENST00000349456.4:c.178C>G	p.Leu60Val	p.L60V	ENST00000349456		60	Cta/Gta	0	
C2orf42	54980		GRCh37	2	70387765	70387765	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR091																					ENST00000264434.2:c.1508T>G	p.Leu503Arg	p.L503R	ENST00000264434	NM_017880.1	503	cTc/cGc	0	
ADD2	119		GRCh37	2	70901941	70901941	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR091																					ENST00000264436.4:c.1610T>G	p.Leu537Arg	p.L537R	ENST00000264436	NM_001617.3	537	cTg/cGg	0	
CLEC4F	165530		GRCh37	2	71043549	71043549	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR091																					ENST00000272367.2:c.964G>C	p.Gly322Arg	p.G322R	ENST00000272367	NM_001258027.1	322	Ggt/Cgt	0	
NOTO	344022		GRCh37	2	73435609	73435609	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR091																					ENST00000398468.3:c.464A>C	p.Gln155Pro	p.Q155P	ENST00000398468	NM_001134462.1	155	cAg/cCg	0	
SNRNP200	23020		GRCh37	2	96950094	96950094	+	splice_donor_variant	Splice_Site	SNP	A	A	G			brca_smc_2018_BR091																					ENST00000323853.5:c.4392+2T>C		p.X1464_splice	ENST00000323853	NM_014014.4	1464		0	
NEB	4703		GRCh37	2	152397284	152397284	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR091																					ENST00000172853.10:c.15611G>A	p.Arg5204Lys	p.R5204K	ENST00000172853		5204	aGa/aAa	0	
TTC30A	92104		GRCh37	2	178483354	178483354	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR091																					ENST00000355689.5:c.76C>G	p.Arg26Gly	p.R26G	ENST00000355689	NM_152275.3	26	Cgc/Ggc	0	
AOX1	316		GRCh37	2	201533501	201533501	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR091																					ENST00000374700.2:c.3773A>C	p.Asn1258Thr	p.N1258T	ENST00000374700	NM_001159.3	1258	aAc/aCc	0	
KIF1A	547		GRCh37	2	241685299	241685299	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR091																					ENST00000320389.7:c.2927A>G	p.Asp976Gly	p.D976G	ENST00000320389	NM_004321.6	976	gAc/gGc	0	
DPPA4	55211		GRCh37	3	109047884	109047884	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR091																					ENST00000335658.6:c.731G>T	p.Gly244Val	p.G244V	ENST00000335658	NM_018189.3	244	gGt/gTt	0	
DNAJB8	165721		GRCh37	3	128181664	128181664	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR091																					ENST00000319153.3:c.425C>T	p.Pro142Leu	p.P142L	ENST00000319153	NM_153330.3	142	cCg/cTg	0	
NAA15	80155		GRCh37	4	140291541	140291541	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR091																					ENST00000296543.5:c.1930C>G	p.Pro644Ala	p.P644A	ENST00000296543	NM_057175.3	644	Cca/Gca	0	
BMP6	654		GRCh37	6	7727342	7727342	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR091																					ENST00000283147.6:c.154C>A	p.Arg52Ser	p.R52S	ENST00000283147	NM_001718.4	52	Cgc/Agc	0	
PTCHD4	442213		GRCh37	6	47847346	47847346	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR091																					ENST00000339488.4:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000339488	NM_001013732.3	412	Gca/Aca	0	
GLYATL3	389396		GRCh37	6	49494204	49494204	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR091																					ENST00000371197.4:c.444G>C	p.Lys148Asn	p.K148N	ENST00000371197	NM_001010904.1	148	aaG/aaC	0	
PRSS35	167681		GRCh37	6	84233382	84233382	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR091																					ENST00000369700.3:c.222C>G	p.Ser74Arg	p.S74R	ENST00000369700	NM_153362.2	74	agC/agG	0	
ZNF12	7559		GRCh37	7	6730954	6730954	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR091																					ENST00000405858.1:c.1619G>T	p.Arg540Leu	p.R540L	ENST00000405858	NM_016265.3	540	cGg/cTg	0	
POM121	9883		GRCh37	7	72400591	72400591	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR091																					ENST00000434423.2:c.1217C>T	p.Pro406Leu	p.P406L	ENST00000434423		406	cCt/cTt	0	
TRBV30	28557		GRCh37	7	142510490	142510490	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR091																					ENST00000417977.2:c.116A>G	p.Glu39Gly	p.E39G	ENST00000417977		39	gAg/gGg	0	
BMP1	649		GRCh37	8	22064932	22064932	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR091																					ENST00000306385.5:c.2478G>T	p.Lys826Asn	p.K826N	ENST00000306385	NM_006129.4	826	aaG/aaT	0	
TRPM6	140803		GRCh37	9	77386728	77386728	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR091																					ENST00000360774.1:c.3427C>G	p.Leu1143Val	p.L1143V	ENST00000360774	NM_017662.4	1143	Ctg/Gtg	0	
WDR96			GRCh37	10	105922138	105922138	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR091																					ENST00000357060.3:c.3270G>C	p.Lys1090Asn	p.K1090N	ENST00000357060	NM_025145.5	1090	aaG/aaC	0	
EBF3	253738		GRCh37	10	131641450	131641450	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR091																					ENST00000355311.5:c.1145G>A	p.Arg382Gln	p.R382Q	ENST00000355311		382	cGg/cAg	0	
USH1C	10083		GRCh37	11	17554848	17554848	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR091																					ENST00000318024.4:c.58G>T	p.Asp20Tyr	p.D20Y	ENST00000318024	NM_005709.3	20	Gat/Tat	0	
GPR83	10888		GRCh37	11	94126776	94126776	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR091																					ENST00000243673.2:c.522G>A	p.Met174Ile	p.M174I	ENST00000243673	NM_016540.3	174	atG/atA	0	
BCAT1	586		GRCh37	12	25047294	25047294	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR091																					ENST00000261192.7:c.194A>C	p.Glu65Ala	p.E65A	ENST00000261192	NM_005504.6	65	gAg/gCg	0	
NBEA	26960		GRCh37	13	35733253	35733253	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR091																					ENST00000400445.3:c.2945G>A	p.Ser982Asn	p.S982N	ENST00000400445	NM_015678.4	982	aGc/aAc	0	
PCCA	5095		GRCh37	13	100764257	100764257	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR091																					ENST00000376285.1:c.242C>G	p.Thr81Ser	p.T81S	ENST00000376285	NM_000282.3	81	aCt/aGt	0	
CHD8	57680		GRCh37	14	21882460	21882460	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR091																					ENST00000399982.2:c.2142G>C	p.Glu714Asp	p.E714D	ENST00000399982	NM_001170629.1	714	gaG/gaC	0	
MYH6	4624		GRCh37	14	23855661	23855661	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR091																					ENST00000356287.3:c.4822C>T	p.Arg1608Cys	p.R1608C	ENST00000356287		1608	Cgc/Tgc	0	
GOLGA5	9950		GRCh37	14	93264139	93264139	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR091																					ENST00000163416.2:c.357T>A	p.Asp119Glu	p.D119E	ENST00000163416	NM_005113.3	119	gaT/gaA	0	
ZSCAN29	146050		GRCh37	15	43661281	43661281	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR091																					ENST00000396976.2:c.363G>A	p.Met121Ile	p.M121I	ENST00000396976	NM_152455.3	121	atG/atA	0	
FBN1	2200		GRCh37	15	48713762	48713762	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR091																					ENST00000316623.5:c.7692C>G	p.Ser2564Arg	p.S2564R	ENST00000316623	NM_000138.4	2564	agC/agG	0	
DMXL2	23312		GRCh37	15	51773445	51773445	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BR091																					ENST00000251076.5:c.5858C>G	p.Ser1953Ter	p.S1953*	ENST00000251076	NM_015263.3	1953	tCa/tGa	0	
TP53	7157		GRCh37	17	7577524	7577524	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR091																					ENST00000269305.4:c.757A>C	p.Thr253Pro	p.T253P	ENST00000269305	NM_001126112.2	253	Acc/Ccc	0	
COPRS	55352		GRCh37	17	30179166	30179166	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR091																					ENST00000302362.6:c.547G>C	p.Glu183Gln	p.E183Q	ENST00000302362	NM_018405.3	183	Gaa/Caa	0	
PIP4K2B	8396		GRCh37	17	36926712	36926712	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR091																					ENST00000269554.3:c.1147G>C	p.Ala383Pro	p.A383P	ENST00000269554	NM_003559.4	383	Gct/Cct	0	
RND2	8153		GRCh37	17	41180476	41180476	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR091																					ENST00000587250.2:c.463G>C	p.Ala155Pro	p.A155P	ENST00000587250		155	Gct/Cct	0	
FBN3	84467		GRCh37	19	8196605	8196605	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR091																					ENST00000270509.2:c.1823G>T	p.Gly608Val	p.G608V	ENST00000270509	NM_032447.3	608	gGc/gTc	0	
GATAD2A	54815		GRCh37	19	19603390	19603390	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR091																					ENST00000358713.3:c.403A>G	p.Lys135Glu	p.K135E	ENST00000358713		135	Aaa/Gaa	0	
ZNF536	9745		GRCh37	19	30934509	30934509	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR091																					ENST00000355537.3:c.40G>A	p.Glu14Lys	p.E14K	ENST00000355537	NM_014717.1	14	Gag/Aag	0	
TARM1	441864		GRCh37	19	54578141	54578141	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR091																					ENST00000432826.1:c.296A>G	p.Tyr99Cys	p.Y99C	ENST00000432826	NM_001135686.1	99	tAc/tGc	0	
SSTR4	6754		GRCh37	20	23016823	23016823	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR091																					ENST00000255008.3:c.703G>A	p.Val235Met	p.V235M	ENST00000255008	NM_001052.2	235	Gtg/Atg	0	
ACTL10	170487		GRCh37	20	32255382	32255382	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR091																					ENST00000330271.4:c.79T>C	p.Cys27Arg	p.C27R	ENST00000330271	NM_001024675.1	27	Tgc/Cgc	0	
MOCS3	27304		GRCh37	20	49575767	49575767	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR091																					ENST00000244051.1:c.388G>C	p.Glu130Gln	p.E130Q	ENST00000244051	NM_014484.4	130	Gag/Cag	0	
BACH1	571		GRCh37	21	30693609	30693609	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR091																					ENST00000286800.3:c.8T>A	p.Leu3Gln	p.L3Q	ENST00000286800	NM_001186.2	3	cTg/cAg	0	
CRYZL1	9946		GRCh37	21	34974603	34974603	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR091																					ENST00000381554.3:c.514G>A	p.Val172Met	p.V172M	ENST00000381554	NM_145858.2	172	Gtg/Atg	0	
ESX1	80712		GRCh37	X	103495163	103495163	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR091																					ENST00000372588.4:c.967C>A	p.Pro323Thr	p.P323T	ENST00000372588	NM_153448.3	323	Ccc/Acc	0	
DOCK11	139818		GRCh37	X	117677493	117677493	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR091																					ENST00000276202.7:c.329C>G	p.Thr110Arg	p.T110R	ENST00000276202	NM_144658.3	110	aCa/aGa	0	
ZBTB33	10009		GRCh37	X	119388616	119388616	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR091																					ENST00000326624.2:c.1346A>G	p.Lys449Arg	p.K449R	ENST00000326624	NM_006777.3	449	aAa/aGa	0	
IGSF1	3547		GRCh37	X	130419759	130419759	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR091																					ENST00000361420.3:c.361C>G	p.Leu121Val	p.L121V	ENST00000361420		121	Cta/Gta	0	
HCFC1	3054		GRCh37	X	153220598	153220598	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR091																					ENST00000310441.7:c.3252G>T	p.Glu1084Asp	p.E1084D	ENST00000310441	NM_005334.2	1084	gaG/gaT	0	
LAMC1	3915		GRCh37	1	183101670	183101670	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR127																					ENST00000258341.4:c.3702G>T	p.Arg1234Ser	p.R1234S	ENST00000258341	NM_002293.3	1234	agG/agT	0	
TSSC1			GRCh37	2	3196338	3196338	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR127																					ENST00000382125.4:c.836G>T	p.Arg279Leu	p.R279L	ENST00000382125	NM_003310.2	279	cGc/cTc	0	
NR1D2	9975		GRCh37	3	24003817	24003817	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR127																					ENST00000312521.4:c.867G>C	p.Lys289Asn	p.K289N	ENST00000312521	NM_005126.4	289	aaG/aaC	0	
LPPR1			GRCh37	9	104048497	104048497	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR127																					ENST00000374874.3:c.364C>T	p.Arg122Ter	p.R122*	ENST00000374874	NM_207299.1	122	Cga/Tga	0	
DGKA	1606		GRCh37	12	56332973	56332973	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR127																					ENST00000331886.5:c.478C>G	p.Leu160Val	p.L160V	ENST00000331886	NM_001345.4	160	Ctt/Gtt	0	
TP53	7157		GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR127																					ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc	0	
RASGRP3	25780		GRCh37	2	33748990	33748990	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR099																					ENST00000402538.3:c.561T>A	p.Asn187Lys	p.N187K	ENST00000402538	NM_170672.2	187	aaT/aaA	0	
RBM25	58517		GRCh37	14	73538363	73538363	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR099																					ENST00000261973.7:c.14C>G	p.Pro5Arg	p.P5R	ENST00000261973	NM_021239.2	5	cCt/cGt	0	
SULT4A1	25830		GRCh37	22	44229549	44229549	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR099																					ENST00000330884.4:c.574C>A	p.Leu192Ile	p.L192I	ENST00000330884	NM_014351.3	192	Ctt/Att	0	
SOCS5	9655		GRCh37	2	46986930	46986930	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR055																					ENST00000306503.5:c.1261C>T	p.Arg421Cys	p.R421C	ENST00000306503	NM_014011.4	421	Cgc/Tgc	0	
MAP1A	4130		GRCh37	15	43814848	43814848	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR055																					ENST00000300231.5:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000300231		393	Cga/Tga	0	
ABHD15	116236		GRCh37	17	27893546	27893546	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR055																					ENST00000307201.4:c.439G>C	p.Gly147Arg	p.G147R	ENST00000307201	NM_198147.2	147	Ggc/Cgc	0	
TTN	7273		GRCh37	2	179485086	179485086	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR016																					ENST00000591111.1:c.41239G>A	p.Glu13747Lys	p.E13747K	ENST00000591111		13747	Gaa/Aaa	0	
PCDHGB2	56103		GRCh37	5	140741263	140741263	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR016																					ENST00000522605.1:c.1561G>T	p.Asp521Tyr	p.D521Y	ENST00000522605	NM_018923.2	521	Gat/Tat	0	
RP1	6101		GRCh37	8	55537981	55537981	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR016																					ENST00000220676.1:c.1539C>G	p.Asn513Lys	p.N513K	ENST00000220676	NM_006269.1	513	aaC/aaG	0	
DAPK1	1612		GRCh37	9	90219969	90219969	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR016																					ENST00000358077.5:c.163G>A	p.Gly55Ser	p.G55S	ENST00000358077	NM_001288731.1	55	Ggt/Agt	0	
GOLGA6L2	283685		GRCh37	15	23685009	23685009	+	synonymous_variant	Silent	SNP	T	T	A			brca_smc_2018_BR016																					ENST00000567107.1:c.2613A>T	p.Gly871=	p.G871=	ENST00000567107		871	ggA/ggT	0	
MYH10	4628		GRCh37	17	8384704	8384704	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR016																					ENST00000269243.4:c.5107C>T	p.Arg1703Cys	p.R1703C	ENST00000269243	NM_005964.3	1703	Cgc/Tgc	0	
ABCC3	8714		GRCh37	17	48753278	48753278	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR016																					ENST00000285238.8:c.2894C>T	p.Ala965Val	p.A965V	ENST00000285238	NM_003786.3	965	gCc/gTc	0	
MEGF6	1953		GRCh37	1	3411028	3411028	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR181																					ENST00000356575.4:c.4036C>G	p.Leu1346Val	p.L1346V	ENST00000356575	NM_001409.3	1346	Ctg/Gtg	0	
C1orf94	84970		GRCh37	1	34677928	34677928	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR181																					ENST00000488417.1:c.1642C>A	p.Pro548Thr	p.P548T	ENST00000488417	NM_001134734.1	548	Cca/Aca	0	
ZMYM4	9202		GRCh37	1	35863017	35863017	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000314607.6:c.3070G>A	p.Glu1024Lys	p.E1024K	ENST00000314607	NM_005095.2	1024	Gaa/Aaa	0	
STIL	6491		GRCh37	1	47755249	47755249	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000360380.3:c.881C>T	p.Ser294Leu	p.S294L	ENST00000360380	NM_001282936.1	294	tCa/tTa	0	
RAVER2	55225		GRCh37	1	65272957	65272957	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000294428.3:c.1480C>T	p.Gln494Ter	p.Q494*	ENST00000294428		494	Cag/Tag	0	
C1orf141	400757		GRCh37	1	67558924	67558924	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR181																					ENST00000371006.1:c.967A>C	p.Ser323Arg	p.S323R	ENST00000371006		323	Agc/Cgc	0	
ARHGAP29	9411		GRCh37	1	94649742	94649742	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000260526.6:c.2212G>A	p.Asp738Asn	p.D738N	ENST00000260526	NM_004815.3	738	Gat/Aat	0	
ARHGAP29	9411		GRCh37	1	94649826	94649826	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR181																					ENST00000260526.6:c.2128G>C	p.Gly710Arg	p.G710R	ENST00000260526	NM_004815.3	710	Gga/Cga	0	
KCNN3	3782		GRCh37	1	154698462	154698462	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000271915.4:c.1631G>A	p.Arg544Gln	p.R544Q	ENST00000271915	NM_001204087.1	544	cGa/cAa	0	
TPR	7175		GRCh37	1	186331467	186331467	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000367478.4:c.742G>A	p.Glu248Lys	p.E248K	ENST00000367478	NM_003292.2	248	Gaa/Aaa	0	
RRP15	51018		GRCh37	1	218480854	218480854	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR181																					ENST00000366932.3:c.585G>C	p.Met195Ile	p.M195I	ENST00000366932	NM_016052.3	195	atG/atC	0	
AKT3	10000		GRCh37	1	243858938	243858938	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR181																					ENST00000263826.5:c.127C>A	p.Gln43Lys	p.Q43K	ENST00000263826	NM_005465.4	43	Caa/Aaa	0	
ALMS1	7840		GRCh37	2	73677238	73677238	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000264448.6:c.3581G>A	p.Arg1194Lys	p.R1194K	ENST00000264448	NM_015120.4	1194	aGa/aAa	0	
IL1R1	3554		GRCh37	2	102788325	102788325	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR181																					ENST00000410023.1:c.786G>C	p.Trp262Cys	p.W262C	ENST00000410023		262	tgG/tgC	0	
RGPD4	285190		GRCh37	2	108507179	108507179	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000408999.3:c.5269G>A	p.Glu1757Lys	p.E1757K	ENST00000408999	NM_182588.2	1757	Gag/Aag	0	
BAZ2B	29994		GRCh37	2	160295023	160295023	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR181																					ENST00000392783.2:c.1084C>G	p.Gln362Glu	p.Q362E	ENST00000392783	NM_013450.2	362	Cag/Gag	0	
LY75	4065		GRCh37	2	160734867	160734867	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR181																					ENST00000263636.4:c.1742T>A	p.Val581Glu	p.V581E	ENST00000263636	NM_002349.3	581	gTa/gAa	0	
IFIH1	64135		GRCh37	2	163133374	163133374	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000263642.2:c.2127G>A	p.Met709Ile	p.M709I	ENST00000263642	NM_022168.3	709	atG/atA	0	
CCDC150	284992		GRCh37	2	197594100	197594100	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000389175.4:c.2740G>A	p.Glu914Lys	p.E914K	ENST00000389175	NM_001080539.1	914	Gaa/Aaa	0	
WNT10A	80326		GRCh37	2	219745727	219745727	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000258411.3:c.10G>A	p.Ala4Thr	p.A4T	ENST00000258411	NM_025216.2	4	Gcc/Acc	0	
FAM124B	79843		GRCh37	2	225244589	225244589	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR181																					ENST00000409685.3:c.1069C>G	p.Leu357Val	p.L357V	ENST00000409685	NM_001122779.1	357	Ctt/Gtt	0	
EIF4E2	9470		GRCh37	2	233431576	233431576	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000258416.3:c.413G>A	p.Arg138Gln	p.R138Q	ENST00000258416	NM_004846.2	138	cGg/cAg	0	
USP4	7375		GRCh37	3	49338009	49338009	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000265560.4:c.1403C>T	p.Ser468Phe	p.S468F	ENST00000265560	NM_003363.3	468	tCt/tTt	0	
CCDC37			GRCh37	3	126135318	126135318	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000352312.1:c.385G>A	p.Asp129Asn	p.D129N	ENST00000352312	NM_182628.2	129	Gac/Aac	0	
GHSR	2693		GRCh37	3	172165927	172165927	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR181																					ENST00000241256.2:c.277T>G	p.Phe93Val	p.F93V	ENST00000241256	NM_198407.2	93	Ttc/Gtc	0	
PIK3CA	5290		GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag	0	
ARHGEF38	54848		GRCh37	4	106580295	106580295	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000420470.2:c.1318C>T	p.Arg440Cys	p.R440C	ENST00000420470	NM_001242729.1	440	Cgc/Tgc	0	
TERT	7015		GRCh37	5	1293686	1293686	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000310581.5:c.1315G>A	p.Glu439Lys	p.E439K	ENST00000310581	NM_198253.2	439	Gag/Aag	0	
ADCY2	108		GRCh37	5	7712982	7712982	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR181																					ENST00000338316.4:c.1592G>T	p.Gly531Val	p.G531V	ENST00000338316	NM_020546.2	531	gGt/gTt	0	
TRIO	7204		GRCh37	5	14498227	14498227	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000344204.4:c.8077G>A	p.Glu2693Lys	p.E2693K	ENST00000344204	NM_007118.2	2693	Gag/Aag	0	
DNAJC21	134218		GRCh37	5	34954657	34954657	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BR181																					ENST00000342382.4:c.1435-1G>C		p.X479_splice	ENST00000342382		479		0	
OSMR	9180		GRCh37	5	38933527	38933527	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR181																					ENST00000274276.3:c.2921C>G	p.Pro974Arg	p.P974R	ENST00000274276	NM_003999.2	974	cCa/cGa	0	
MROH2B	133558		GRCh37	5	41004510	41004510	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000399564.4:c.4132G>A	p.Asp1378Asn	p.D1378N	ENST00000399564	NM_173489.4	1378	Gac/Aac	0	
LIX1	167410		GRCh37	5	96430651	96430651	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BR181																					ENST00000274382.4:c.650C>G	p.Ser217Ter	p.S217*	ENST00000274382	NM_153234.4	217	tCa/tGa	0	
SLC27A6	28965		GRCh37	5	128362942	128362942	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000262462.4:c.1372G>A	p.Val458Ile	p.V458I	ENST00000262462		458	Gtt/Att	0	
CPEB4	80315		GRCh37	5	173317215	173317215	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR181																					ENST00000265085.5:c.479C>G	p.Ser160Cys	p.S160C	ENST00000265085	NM_030627.2	160	tCt/tGt	0	
ARMC2	84071		GRCh37	6	109225486	109225486	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR181																					ENST00000392644.4:c.901G>C	p.Glu301Gln	p.E301Q	ENST00000392644	NM_032131.4	301	Gag/Cag	0	
CDC40	51362		GRCh37	6	110538907	110538907	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000307731.1:c.991C>T	p.His331Tyr	p.H331Y	ENST00000307731	NM_015891.2	331	Cac/Tac	0	
SYNE1	23345		GRCh37	6	152631142	152631142	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR181																					ENST00000367255.5:c.17030C>G	p.Ser5677Cys	p.S5677C	ENST00000367255	NM_182961.3	5677	tCt/tGt	0	
DFNA5			GRCh37	7	24784301	24784301	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR181																					ENST00000342947.3:c.284C>A	p.Ala95Glu	p.A95E	ENST00000342947	NM_004403.2	95	gCa/gAa	0	
DOCK4	9732		GRCh37	7	111487056	111487056	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000437633.1:c.2600C>T	p.Ser867Leu	p.S867L	ENST00000437633	NM_014705.3	867	tCa/tTa	0	
CUL1	8454		GRCh37	7	148454132	148454132	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR181																					ENST00000325222.4:c.373G>T	p.Asp125Tyr	p.D125Y	ENST00000325222	NM_003592.2	125	Gat/Tat	0	
TSPYL5	85453		GRCh37	8	98289636	98289636	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR181																					ENST00000322128.3:c.437G>T	p.Gly146Val	p.G146V	ENST00000322128	NM_033512.2	146	gGg/gTg	0	
CSMD3	114788		GRCh37	8	113697778	113697778	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000297405.5:c.2339G>A	p.Gly780Asp	p.G780D	ENST00000297405	NM_198123.1	780	gGt/gAt	0	
KIAA0196			GRCh37	8	126056128	126056128	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR181																					ENST00000318410.7:c.2789A>C	p.Tyr930Ser	p.Y930S	ENST00000318410	NM_014846.3	930	tAt/tCt	0	
COL22A1	169044		GRCh37	8	139809084	139809084	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000303045.6:c.1574G>A	p.Gly525Asp	p.G525D	ENST00000303045	NM_152888.1	525	gGc/gAc	0	
LINGO2	158038		GRCh37	9	27950127	27950127	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR181																					ENST00000308675.3:c.543G>T	p.Gln181His	p.Q181H	ENST00000308675		181	caG/caT	0	
SLC28A3	64078		GRCh37	9	86894291	86894291	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR181																					ENST00000376238.4:c.1838C>G	p.Ser613Cys	p.S613C	ENST00000376238	NM_001199633.1	613	tCc/tGc	0	
VAV2	7410		GRCh37	9	136857321	136857321	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR181																					ENST00000371850.3:c.80C>A	p.Ser27Ter	p.S27*	ENST00000371850	NM_001134398.1	27	tCg/tAg	0	
SPAG6	9576		GRCh37	10	22675836	22675836	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR181																					ENST00000376624.3:c.626G>C	p.Gly209Ala	p.G209A	ENST00000376624	NM_012443.3	209	gGa/gCa	0	
C10orf71	118461		GRCh37	10	50531869	50531869	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR181																					ENST00000374144.3:c.1279C>G	p.Leu427Val	p.L427V	ENST00000374144		427	Ctt/Gtt	0	
C11orf58	10944		GRCh37	11	16774370	16774370	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000228136.4:c.247C>T	p.Gln83Ter	p.Q83*	ENST00000228136		83	Caa/Taa	0	
INPPL1	3636		GRCh37	11	71941480	71941480	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000298229.2:c.1165C>T	p.Gln389Ter	p.Q389*	ENST00000298229	NM_001567.3	389	Cag/Tag	0	
B3GNT6	192134		GRCh37	11	76750935	76750935	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000533140.1:c.340G>A	p.Gly114Ser	p.G114S	ENST00000533140	NM_138706.4	114	Ggc/Agc	0	
KIF5A	3798		GRCh37	12	57974808	57974808	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000455537.2:c.2608G>A	p.Glu870Lys	p.E870K	ENST00000455537	NM_004984.2	870	Gag/Aag	0	
KERA	11081		GRCh37	12	91449867	91449867	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR181																					ENST00000266719.3:c.192A>T	p.Lys64Asn	p.K64N	ENST00000266719	NM_007035.3	64	aaA/aaT	0	
GLT8D2	83468		GRCh37	12	104396922	104396922	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000360814.4:c.275C>T	p.Thr92Ile	p.T92I	ENST00000360814	NM_031302.3	92	aCt/aTt	0	
KDM2B	84678		GRCh37	12	121881584	121881584	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR181																					ENST00000377071.4:c.2464C>G	p.Gln822Glu	p.Q822E	ENST00000377071	NM_032590.4	822	Caa/Gaa	0	
ZNF140	7699		GRCh37	12	133682254	133682254	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000355557.2:c.391C>T	p.Gln131Ter	p.Q131*	ENST00000355557	NM_003440.2	131	Caa/Taa	0	
BRCA2	675		GRCh37	13	32890616	32890616	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000380152.3:c.19G>A	p.Glu7Lys	p.E7K	ENST00000380152		7	Gag/Aag	0	
ENOX1	55068		GRCh37	13	43810834	43810834	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR181																					ENST00000261488.6:c.1652G>C	p.Arg551Pro	p.R551P	ENST00000261488	NM_017993.3	551	cGa/cCa	0	
MYCBP2	23077		GRCh37	13	77633720	77633720	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000357337.6:c.12964G>A	p.Gly4322Ser	p.G4322S	ENST00000357337		4322	Ggt/Agt	0	
ZFHX2	85446		GRCh37	14	23991568	23991568	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000419474.3:c.7322G>A	p.Gly2441Asp	p.G2441D	ENST00000419474	NM_033400.2	2441	gGc/gAc	0	
TTC6	319089		GRCh37	14	38310666	38310666	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000267368.7:c.1217C>T	p.Ser406Leu	p.S406L	ENST00000267368		406	tCa/tTa	0	
DLGAP5	9787		GRCh37	14	55617537	55617537	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000247191.2:c.2398G>A	p.Glu800Lys	p.E800K	ENST00000247191	NM_014750.4	800	Gaa/Aaa	0	
RORA	6095		GRCh37	15	60824048	60824048	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR181																					ENST00000335670.6:c.199C>G	p.Gln67Glu	p.Q67E	ENST00000335670	NM_134261.2	67	Caa/Gaa	0	
ZNF174	7727		GRCh37	16	3452207	3452207	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000268655.4:c.203G>A	p.Arg68Gln	p.R68Q	ENST00000268655	NM_003450.2	68	cGa/cAa	0	
PKD1L2	114780		GRCh37	16	81253846	81253846	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR181																					ENST00000337114.4:c.130C>G	p.Pro44Ala	p.P44A	ENST00000337114	NM_001076780.1	44	Cca/Gca	0	
TP53	7157		GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag	0	
ABCA10	10349		GRCh37	17	67178416	67178416	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR181																					ENST00000269081.4:c.2647G>T	p.Val883Phe	p.V883F	ENST00000269081	NM_080282.3	883	Gtt/Ttt	0	
ABCA5	23461		GRCh37	17	67260993	67260993	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR181																					ENST00000392676.3:c.3198G>C	p.Trp1066Cys	p.W1066C	ENST00000392676		1066	tgG/tgC	0	
SRP68	6730		GRCh37	17	74068430	74068430	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000307877.2:c.143C>T	p.Ser48Leu	p.S48L	ENST00000307877	NM_014230.3	48	tCg/tTg	0	
SEC14L1	6397		GRCh37	17	75196743	75196743	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000430767.4:c.997C>T	p.His333Tyr	p.H333Y	ENST00000430767	NM_001204410.1	333	Cat/Tat	0	
CCDC57	284001		GRCh37	17	80159690	80159690	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR181																					ENST00000389641.4:c.131A>T	p.Glu44Val	p.E44V	ENST00000389641		44	gAg/gTg	0	
NDC80	10403		GRCh37	18	2587904	2587904	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR181																					ENST00000261597.4:c.745G>C	p.Glu249Gln	p.E249Q	ENST00000261597	NM_006101.2	249	Gag/Cag	0	
NOL4	8715		GRCh37	18	31673526	31673526	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR181																					ENST00000261592.5:c.675G>C	p.Met225Ile	p.M225I	ENST00000261592	NM_001198546.1	225	atG/atC	0	
ZNF527	84503		GRCh37	19	37880446	37880446	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR181																					ENST00000436120.2:c.1495G>C	p.Glu499Gln	p.E499Q	ENST00000436120	NM_032453.1	499	Gaa/Caa	0	
TRMT6	51605		GRCh37	20	5923115	5923115	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000203001.2:c.985G>A	p.Glu329Lys	p.E329K	ENST00000203001	NM_001281467.1	329	Gaa/Aaa	0	
PCBP3	54039		GRCh37	21	47359956	47359956	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR181																					ENST00000400314.1:c.922A>G	p.Ile308Val	p.I308V	ENST00000400314		308	Ata/Gta	0	
ARSF	416		GRCh37	X	2990115	2990115	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR181																					ENST00000359361.2:c.60C>A	p.Cys20Ter	p.C20*	ENST00000359361	NM_004042.4	20	tgC/tgA	0	
GRIPAP1	56850		GRCh37	X	48841773	48841773	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000376423.4:c.925C>T	p.Gln309Ter	p.Q309*	ENST00000376423	NM_207672.1	309	Cag/Tag	0	
PAGE1	8712		GRCh37	X	49454075	49454075	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR181																					ENST00000376150.3:c.364G>A	p.Asp122Asn	p.D122N	ENST00000376150	NM_003785.3	122	Gat/Aat	0	
CXorf67	340602		GRCh37	X	51150616	51150616	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR181																					ENST00000342995.2:c.748G>A	p.Ala250Thr	p.A250T	ENST00000342995		250	Gcc/Acc	0	
PRDM2	7799		GRCh37	1	14106410	14106410	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000235372.7:c.2120C>T	p.Ser707Leu	p.S707L	ENST00000235372	NM_012231.4	707	tCa/tTa	0	
CASP9	842		GRCh37	1	15844842	15844842	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR069																					ENST00000333868.5:c.181G>C	p.Asp61His	p.D61H	ENST00000333868		61	Gat/Cat	0	
INADL			GRCh37	1	62483584	62483584	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR069																					ENST00000371158.2:c.3924G>C	p.Lys1308Asn	p.K1308N	ENST00000371158	NM_176877.2	1308	aaG/aaC	0	
PRKACB	5567		GRCh37	1	84679968	84679968	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR069																					ENST00000370689.2:c.898A>G	p.Thr300Ala	p.T300A	ENST00000370689	NM_002731.2	300	Acg/Gcg	0	
EPS8L3	79574		GRCh37	1	110295746	110295746	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000361965.4:c.1193C>T	p.Ser398Phe	p.S398F	ENST00000361965		398	tCc/tTc	0	
ALDH9A1	223		GRCh37	1	165652347	165652347	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR069																					ENST00000354775.4:c.328G>T	p.Glu110Ter	p.E110*	ENST00000354775	NM_000696.3	110	Gaa/Taa	0	
RGS18	64407		GRCh37	1	192128443	192128443	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR069																					ENST00000367460.3:c.213A>C	p.Lys71Asn	p.K71N	ENST00000367460	NM_130782.2	71	aaA/aaC	0	
ZBED6	100381270		GRCh37	1	203767164	203767164	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000550078.1:c.514C>T	p.Leu172Phe	p.L172F	ENST00000550078	NM_001174108.1	172	Ctt/Ttt	0	
PLXNA2	5362		GRCh37	1	208218494	208218494	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR069																					ENST00000367033.3:c.3557G>C	p.Gly1186Ala	p.G1186A	ENST00000367033	NM_025179.3	1186	gGa/gCa	0	
CPSF3	51692		GRCh37	2	9576392	9576392	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR069																					ENST00000238112.3:c.662G>C	p.Arg221Thr	p.R221T	ENST00000238112	NM_016207.3	221	aGa/aCa	0	
KCNG3	170850		GRCh37	2	42720220	42720220	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000306078.1:c.422G>A	p.Arg141His	p.R141H	ENST00000306078	NM_133329.5	141	cGc/cAc	0	
MRPL53	116540		GRCh37	2	74699353	74699353	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000258105.7:c.232G>A	p.Gly78Ser	p.G78S	ENST00000258105	NM_053050.4	78	Ggc/Agc	0	
DNAH6	1768		GRCh37	2	84831469	84831469	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR069																					ENST00000237449.6:c.2875G>T	p.Val959Phe	p.V959F	ENST00000237449		959	Gtt/Ttt	0	
TBC1D8	11138		GRCh37	2	101624678	101624678	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR069																					ENST00000376840.4:c.3028G>C	p.Glu1010Gln	p.E1010Q	ENST00000376840		1010	Gaa/Caa	0	
KIAA1715			GRCh37	2	176802128	176802128	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000272748.4:c.998C>T	p.Ser333Leu	p.S333L	ENST00000272748	NM_030650.1	333	tCa/tTa	0	
GLS	2744		GRCh37	2	191766691	191766691	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000320717.3:c.754C>T	p.Gln252Ter	p.Q252*	ENST00000320717	NM_014905.4	252	Caa/Taa	0	
ANKRD44	91526		GRCh37	2	197946425	197946425	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR069																					ENST00000282272.8:c.1458T>A	p.His486Gln	p.H486Q	ENST00000282272	NM_001195144.1	486	caT/caA	0	
IL17RE	132014		GRCh37	3	9948702	9948702	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR069																					ENST00000383814.3:c.584C>G	p.Ser195Cys	p.S195C	ENST00000383814	NM_153480.1	195	tCt/tGt	0	
ALS2CL	259173		GRCh37	3	46718448	46718448	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000318962.4:c.1822G>A	p.Asp608Asn	p.D608N	ENST00000318962	NM_147129.3	608	Gac/Aac	0	
CACNA1D	776		GRCh37	3	53810885	53810885	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			brca_smc_2018_BR069																					ENST00000350061.5:c.4491-2A>G		p.X1497_splice	ENST00000350061	NM_001128840.2	1497		0	
ADAMTS9	56999		GRCh37	3	64589733	64589733	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000498707.1:c.3612G>A	p.Met1204Ile	p.M1204I	ENST00000498707	NM_182920.1	1204	atG/atA	0	
TOMM70A			GRCh37	3	100084449	100084449	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000284320.5:c.1786G>A	p.Glu596Lys	p.E596K	ENST00000284320	NM_014820.4	596	Gaa/Aaa	0	
CLDN18	51208		GRCh37	3	137743467	137743467	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000183605.5:c.404G>A	p.Gly135Glu	p.G135E	ENST00000183605	NM_016369.3	135	gGa/gAa	0	
RBP2	5948		GRCh37	3	139181129	139181129	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR069																					ENST00000232217.2:c.77T>G	p.Ile26Ser	p.I26S	ENST00000232217	NM_004164.2	26	aTt/aGt	0	
ZIC4	84107		GRCh37	3	147120556	147120556	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000383075.3:c.29G>A	p.Arg10Lys	p.R10K	ENST00000383075	NM_032153.5	10	aGg/aAg	0	
ANKUB1	389161		GRCh37	3	149485609	149485609	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR069																					ENST00000446160.1:c.840T>G	p.Ile280Met	p.I280M	ENST00000446160	NM_001144960.1	280	atT/atG	0	
PLCH1	23007		GRCh37	3	155218584	155218584	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000340059.7:c.1669-1G>A		p.X557_splice	ENST00000340059	NM_001130960.1	557		0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR069																					ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt	0	
KNG1	3827		GRCh37	3	186459869	186459869	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR069																					ENST00000265023.4:c.1684G>T	p.Asp562Tyr	p.D562Y	ENST00000265023	NM_001102416.2	562	Gac/Tac	0	
CNGA1	1259		GRCh37	4	47954625	47954625	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000358519.4:c.94C>T	p.Arg32Ter	p.R32*	ENST00000358519		32	Cga/Tga	0	
TMEM165	55858		GRCh37	4	56284022	56284022	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000381334.5:c.662G>A	p.Ser221Asn	p.S221N	ENST00000381334	NM_018475.4	221	aGc/aAc	0	
CCNA2	890		GRCh37	4	122739227	122739227	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR069																					ENST00000274026.5:c.1222T>C	p.Ser408Pro	p.S408P	ENST00000274026	NM_001237.3	408	Tca/Cca	0	
CLGN	1047		GRCh37	4	141311850	141311850	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR069																					ENST00000325617.5:c.1684G>C	p.Glu562Gln	p.E562Q	ENST00000325617	NM_004362.2	562	Gaa/Caa	0	
SLC45A2	51151		GRCh37	5	33951769	33951769	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000296589.4:c.1046G>A	p.Gly349Glu	p.G349E	ENST00000296589	NM_016180.3	349	gGg/gAg	0	
CMYA5	202333		GRCh37	5	79032719	79032719	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR069																					ENST00000446378.2:c.8131G>C	p.Glu2711Gln	p.E2711Q	ENST00000446378	NM_153610.3	2711	Gaa/Caa	0	
PSORS1C1	170679		GRCh37	6	31107513	31107513	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR069																					ENST00000259881.9:c.263T>A	p.Leu88Gln	p.L88Q	ENST00000259881	NM_014068.2	88	cTg/cAg	0	
PGC	5225		GRCh37	6	41710189	41710189	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR069																					ENST00000373025.3:c.486G>C	p.Leu162Phe	p.L162F	ENST00000373025	NM_002630.3	162	ttG/ttC	0	
SNX14	57231		GRCh37	6	86252981	86252981	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR069																					ENST00000314673.3:c.1308G>C	p.Met436Ile	p.M436I	ENST00000314673	NM_153816.3	436	atG/atC	0	
MAP7	9053		GRCh37	6	136681912	136681912	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000354570.3:c.1726G>A	p.Glu576Lys	p.E576K	ENST00000354570	NM_001198616.1	576	Gaa/Aaa	0	
KIAA1244			GRCh37	6	138531111	138531111	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR069																					ENST00000251691.4:c.284A>G	p.Asn95Ser	p.N95S	ENST00000251691	NM_020340.4	95	aAt/aGt	0	
ACTB	60		GRCh37	7	5569173	5569173	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR069																					ENST00000331789.5:c.116G>T	p.Arg39Met	p.R39M	ENST00000331789	NM_001101.3	39	aGg/aTg	0	
ANLN	54443		GRCh37	7	36446159	36446159	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000265748.2:c.857C>T	p.Ser286Leu	p.S286L	ENST00000265748	NM_018685.2	286	tCa/tTa	0	
PXDNL	137902		GRCh37	8	52370223	52370223	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR069																					ENST00000356297.4:c.817T>G	p.Ser273Ala	p.S273A	ENST00000356297	NM_144651.4	273	Tca/Gca	0	
SYBU	55638		GRCh37	8	110598329	110598329	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR069																					ENST00000276646.9:c.490A>G	p.Met164Val	p.M164V	ENST00000276646	NM_001099754.1	164	Atg/Gtg	0	
ADAMTSL1	92949		GRCh37	9	18776827	18776827	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000380548.4:c.2600G>A	p.Arg867Lys	p.R867K	ENST00000380548	NM_001040272.5	867	aGg/aAg	0	
PTCH1	5727		GRCh37	9	98209305	98209305	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR069																					ENST00000331920.6:c.4233C>A	p.Asp1411Glu	p.D1411E	ENST00000331920	NM_000264.3	1411	gaC/gaA	0	
FOXE1	2304		GRCh37	9	100616270	100616270	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000375123.3:c.74C>T	p.Thr25Met	p.T25M	ENST00000375123	NM_004473.3	25	aCg/aTg	0	
ZFP37	7539		GRCh37	9	115806182	115806182	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000374227.3:c.716C>T	p.Ser239Phe	p.S239F	ENST00000374227		239	tCt/tTt	0	
TRIM32	22954		GRCh37	9	119460842	119460842	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000373983.2:c.821C>T	p.Thr274Ile	p.T274I	ENST00000373983		274	aCc/aTc	0	
ZBTB6	10773		GRCh37	9	125673312	125673312	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000373659.3:c.1040G>A	p.Gly347Glu	p.G347E	ENST00000373659	NM_006626.5	347	gGa/gAa	0	
PPP2R4			GRCh37	9	131897090	131897090	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR069																					ENST00000337738.1:c.582C>G	p.Phe194Leu	p.F194L	ENST00000337738	NM_178001.2	194	ttC/ttG	0	
ABCA2	20		GRCh37	9	139907378	139907378	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000341511.6:c.4868-1G>A		p.X1623_splice	ENST00000341511	NM_212533.2	1623		0	
ANAPC2	29882		GRCh37	9	140074773	140074773	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR069																					ENST00000323927.2:c.1750G>C	p.Glu584Gln	p.E584Q	ENST00000323927	NM_013366.3	584	Gag/Cag	0	
NRP1	8829		GRCh37	10	33619683	33619683	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR069																					ENST00000265371.4:c.201T>G	p.Ile67Met	p.I67M	ENST00000265371		67	atT/atG	0	
ERCC6	2074		GRCh37	10	50740788	50740788	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR069																					ENST00000355832.5:c.223A>C	p.Ile75Leu	p.I75L	ENST00000355832	NM_000124.3	75	Atc/Ctc	0	
CCAR1	55749		GRCh37	10	70546366	70546366	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR069																					ENST00000265872.6:c.2797G>C	p.Asp933His	p.D933H	ENST00000265872	NM_018237.2	933	Gat/Cat	0	
SORCS3	22986		GRCh37	10	107012560	107012560	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000369701.3:c.3133C>T	p.Leu1045Phe	p.L1045F	ENST00000369701	NM_014978.1	1045	Ctc/Ttc	0	
DHX32	55760		GRCh37	10	127548425	127548425	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000284690.3:c.596G>A	p.Gly199Glu	p.G199E	ENST00000284690	NM_018180.2	199	gGa/gAa	0	
AL450307.1			GRCh37	10	133608050	133608050	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000341866.3:c.326C>T	p.Ser109Phe	p.S109F	ENST00000341866		109	tCc/tTc	0	
NLRP14	338323		GRCh37	11	7063819	7063819	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR069																					ENST00000299481.4:c.562G>C	p.Gly188Arg	p.G188R	ENST00000299481	NM_176822.3	188	Ggg/Cgg	0	
ACP2	53		GRCh37	11	47267264	47267264	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000256997.3:c.419C>T	p.Pro140Leu	p.P140L	ENST00000256997	NM_001610.2	140	cCt/cTt	0	
RAB1B	81876		GRCh37	11	66039643	66039643	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR069																					ENST00000311481.6:c.103G>C	p.Glu35Gln	p.E35Q	ENST00000311481	NM_030981.2	35	Gag/Cag	0	
PCF11	51585		GRCh37	11	82877714	82877714	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR069																					ENST00000298281.4:c.1775A>C	p.Lys592Thr	p.K592T	ENST00000298281	NM_015885.3	592	aAg/aCg	0	
ARHGAP20	57569		GRCh37	11	110494902	110494902	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR069																					ENST00000260283.4:c.487T>C	p.Phe163Leu	p.F163L	ENST00000260283	NM_020809.3	163	Ttt/Ctt	0	
DYRK4	8798		GRCh37	12	4714118	4714118	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000010132.5:c.820G>A	p.Glu274Lys	p.E274K	ENST00000010132		274	Gaa/Aaa	0	
ANO2	57101		GRCh37	12	5853481	5853481	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR069																					ENST00000356134.5:c.1184G>C	p.Arg395Thr	p.R395T	ENST00000356134		395	aGa/aCa	0	
LRP6	4040		GRCh37	12	12312728	12312728	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000261349.4:c.2450C>T	p.Ser817Phe	p.S817F	ENST00000261349	NM_002336.2	817	tCt/tTt	0	
PYROXD1	79912		GRCh37	12	21598364	21598364	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR069																					ENST00000240651.9:c.249A>G	p.Ile83Met	p.I83M	ENST00000240651	NM_024854.3	83	atA/atG	0	
CASC1	55259		GRCh37	12	25307350	25307350	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000320267.9:c.323C>T	p.Ser108Leu	p.S108L	ENST00000320267	NM_001082973.1	108	tCa/tTa	0	
AMHR2	269		GRCh37	12	53822769	53822769	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR069																					ENST00000257863.4:c.942T>A	p.Phe314Leu	p.F314L	ENST00000257863	NM_001164690.1	314	ttT/ttA	0	
NCKAP1L	3071		GRCh37	12	54903498	54903498	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR069																					ENST00000293373.6:c.552C>A	p.Asp184Glu	p.D184E	ENST00000293373	NM_005337.4	184	gaC/gaA	0	
MYO1A	4640		GRCh37	12	57423634	57423634	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000300119.3:c.2614G>A	p.Asp872Asn	p.D872N	ENST00000300119	NM_005379.3	872	Gac/Aac	0	
TCP11L2	255394		GRCh37	12	106712225	106712225	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR069																					ENST00000299045.3:c.397T>A	p.Phe133Ile	p.F133I	ENST00000299045	NM_152772.1	133	Ttt/Att	0	
SPPL3	121665		GRCh37	12	121221489	121221489	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000353487.2:c.377C>T	p.Ser126Leu	p.S126L	ENST00000353487	NM_139015.4	126	tCa/tTa	0	
CYSLTR2	57105		GRCh37	13	49281462	49281462	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000282018.3:c.509C>T	p.Ser170Leu	p.S170L	ENST00000282018	NM_020377.2	170	tCa/tTa	0	
EML5	161436		GRCh37	14	89172764	89172764	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR069																					ENST00000380664.5:c.1664A>G	p.Lys555Arg	p.K555R	ENST00000380664		555	aAg/aGg	0	
GOLGA5	9950		GRCh37	14	93277941	93277941	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR069																					ENST00000163416.2:c.1162A>G	p.Asn388Asp	p.N388D	ENST00000163416	NM_005113.3	388	Aat/Gat	0	
GOLGA6L2	283685		GRCh37	15	23685009	23685009	+	synonymous_variant	Silent	SNP	T	T	A			brca_smc_2018_BR069																					ENST00000567107.1:c.2613A>T	p.Gly871=	p.G871=	ENST00000567107		871	ggA/ggT	0	
CIB2	10518		GRCh37	15	78416056	78416056	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR069																					ENST00000258930.3:c.77A>G	p.Asp26Gly	p.D26G	ENST00000258930	NM_006383.3	26	gAc/gGc	0	
CDIPT	10423		GRCh37	16	29874138	29874138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR069																					ENST00000219789.6:c.41T>A	p.Ile14Asn	p.I14N	ENST00000219789	NM_006319.3	14	aTc/aAc	0	
CCDC113	29070		GRCh37	16	58312508	58312508	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR069																					ENST00000219299.4:c.1014C>G	p.Ile338Met	p.I338M	ENST00000219299	NM_014157.3	338	atC/atG	0	
PRMT7	54496		GRCh37	16	68373860	68373860	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR069																					ENST00000339507.5:c.916G>T	p.Glu306Ter	p.E306*	ENST00000339507		306	Gag/Tag	0	
SPG7	6687		GRCh37	16	89611140	89611140	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000268704.2:c.1409G>A	p.Arg470Gln	p.R470Q	ENST00000268704	NM_003119.2	470	cGa/cAa	0	
NLRP1	22861		GRCh37	17	5487173	5487173	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR069																					ENST00000572272.1:c.105G>C	p.Arg35Ser	p.R35S	ENST00000572272		35	agG/agC	0	
ALOX12	239		GRCh37	17	6901873	6901873	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR069																					ENST00000251535.6:c.383G>C	p.Arg128Pro	p.R128P	ENST00000251535	NM_000697.2	128	cGa/cCa	0	
MED24	9862		GRCh37	17	38187443	38187443	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR069																					ENST00000394128.2:c.1123G>C	p.Glu375Gln	p.E375Q	ENST00000394128	NM_014815.3	375	Gag/Cag	0	
RNF213	57674		GRCh37	17	78286942	78286942	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000582970.1:c.2786C>T	p.Ser929Leu	p.S929L	ENST00000582970	NM_001256071.1	929	tCa/tTa	0	
FASN	2194		GRCh37	17	80038609	80038609	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000306749.2:c.6785C>T	p.Ser2262Phe	p.S2262F	ENST00000306749	NM_004104.4	2262	tCc/tTc	0	
CDH19	28513		GRCh37	18	64239258	64239258	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000262150.2:c.184C>T	p.His62Tyr	p.H62Y	ENST00000262150	NM_021153.3	62	Cac/Tac	0	
ZNF77	58492		GRCh37	19	2934001	2934001	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000314531.4:c.1124C>T	p.Thr375Ile	p.T375I	ENST00000314531	NM_021217.2	375	aCc/aTc	0	
MUC16	94025		GRCh37	19	9048553	9048553	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR069																					ENST00000397910.4:c.33078A>C	p.Glu11026Asp	p.E11026D	ENST00000397910	NM_024690.2	11026	gaA/gaC	0	
CYP4F11	57834		GRCh37	19	16035617	16035617	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000248041.8:c.601G>A	p.Asp201Asn	p.D201N	ENST00000248041	NM_001128932.1	201	Gac/Aac	0	
ABHD8	79575		GRCh37	19	17412056	17412056	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000247706.3:c.370C>T	p.Pro124Ser	p.P124S	ENST00000247706	NM_024527.4	124	Ccg/Tcg	0	
ERCC2	2068		GRCh37	19	45855835	45855835	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000391945.4:c.1975C>T	p.His659Tyr	p.H659Y	ENST00000391945	NM_000400.3	659	Cac/Tac	0	
ZNF583	147949		GRCh37	19	56935315	56935315	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR069																					ENST00000291598.7:c.1288C>A	p.His430Asn	p.H430N	ENST00000291598	NM_001159860.1	430	Cat/Aat	0	
ZNF256	10172		GRCh37	19	58453860	58453860	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR069																					ENST00000282308.3:c.316G>T	p.Val106Phe	p.V106F	ENST00000282308	NM_005773.2	106	Gtt/Ttt	0	
ZNF329	79673		GRCh37	19	58640289	58640289	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR069																					ENST00000358067.4:c.582G>C	p.Gln194His	p.Q194H	ENST00000358067		194	caG/caC	0	
NINL	22981		GRCh37	20	25459757	25459757	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR069																					ENST00000278886.6:c.2003A>G	p.Glu668Gly	p.E668G	ENST00000278886	NM_025176.4	668	gAg/gGg	0	
PIGU	128869		GRCh37	20	33148768	33148768	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000217446.3:c.1210G>A	p.Asp404Asn	p.D404N	ENST00000217446	NM_080476.4	404	Gat/Aat	0	
ATP9A	10079		GRCh37	20	50217859	50217859	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR069																					ENST00000338821.5:c.3035T>A	p.Phe1012Tyr	p.F1012Y	ENST00000338821	NM_006045.1	1012	tTc/tAc	0	
TSHZ2	128553		GRCh37	20	51871021	51871021	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000371497.5:c.1024G>A	p.Asp342Asn	p.D342N	ENST00000371497	NM_173485.5	342	Gat/Aat	0	
RP11-429E11.3			GRCh37	20	60294127	60294127	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000317652.1:c.100C>T	p.Leu34Phe	p.L34F	ENST00000317652		34	Ctt/Ttt	0	
DIDO1	11083		GRCh37	20	61512603	61512603	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000266070.4:c.4705G>A	p.Glu1569Lys	p.E1569K	ENST00000266070	NM_033081.2	1569	Gag/Aag	0	
DEPDC5	9681		GRCh37	22	32270264	32270264	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000400246.1:c.3569G>A	p.Gly1190Glu	p.G1190E	ENST00000400246		1190	gGa/gAa	0	
RAI2	10742		GRCh37	X	17819289	17819289	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR069																					ENST00000331511.1:c.842C>A	p.Thr281Asn	p.T281N	ENST00000331511		281	aCc/aAc	0	
MAGEB6	158809		GRCh37	X	26213029	26213029	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000379034.1:c.1066G>A	p.Glu356Lys	p.E356K	ENST00000379034	NM_173523.2	356	Gag/Aag	0	
SMARCA1	6594		GRCh37	X	128650475	128650475	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			brca_smc_2018_BR069																					ENST00000371122.4:c.262-1G>A		p.X88_splice	ENST00000371122	NM_003069.3	88		0	
TKTL1	8277		GRCh37	X	153539312	153539312	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR069																					ENST00000369915.3:c.476G>A	p.Gly159Glu	p.G159E	ENST00000369915	NM_012253.3	159	gGa/gAa	0	
KCTD3	51133		GRCh37	1	215749254	215749254	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR206																					ENST00000259154.4:c.194A>T	p.Asp65Val	p.D65V	ENST00000259154	NM_016121.3	65	gAt/gTt	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR206																					ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt	0	
LAMA4	3910		GRCh37	6	112460957	112460957	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR206																					ENST00000230538.7:c.3107C>T	p.Ala1036Val	p.A1036V	ENST00000230538	NM_001105206.2	1036	gCc/gTc	0	
TRIM32	22954		GRCh37	9	119460520	119460520	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR206																					ENST00000373983.2:c.499A>G	p.Lys167Glu	p.K167E	ENST00000373983		167	Aag/Gag	0	
KIAA1598			GRCh37	10	118687368	118687368	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR206																					ENST00000355371.4:c.1047G>C	p.Glu349Asp	p.E349D	ENST00000355371	NM_001258299.1	349	gaG/gaC	0	
ZNF641	121274		GRCh37	12	48738433	48738433	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR206																					ENST00000301042.3:c.511C>T	p.Pro171Ser	p.P171S	ENST00000301042	NM_152320.2	171	Cct/Tct	0	
SH2B3	10019		GRCh37	12	111856520	111856520	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR206																					ENST00000341259.2:c.571C>T	p.Pro191Ser	p.P191S	ENST00000341259	NM_005475.2	191	Ccg/Tcg	0	
NCOR2	9612		GRCh37	12	124812015	124812015	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR206																					ENST00000405201.1:c.7123C>T	p.Pro2375Ser	p.P2375S	ENST00000405201		2375	Ccc/Tcc	0	
ENPP3	5169		GRCh37	6	132067960	132067960	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR116																					ENST00000357639.3:c.2492G>T	p.Arg831Ile	p.R831I	ENST00000357639	NM_005021.3	831	aGa/aTa	0	
CDCA7L	55536		GRCh37	7	21948088	21948088	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR116																					ENST00000406877.3:c.341C>T	p.Ser114Phe	p.S114F	ENST00000406877	NM_018719.4	114	tCt/tTt	0	
ABHD17B	51104		GRCh37	9	74489540	74489540	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR116																					ENST00000333421.6:c.457C>T	p.Leu153Phe	p.L153F	ENST00000333421	NM_001025780.1	153	Ctt/Ttt	0	
BAMBI	25805		GRCh37	10	28970375	28970375	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR116																					ENST00000375533.3:c.265T>C	p.Ser89Pro	p.S89P	ENST00000375533	NM_012342.2	89	Tct/Cct	0	
TBC1D12	23232		GRCh37	10	96163151	96163151	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR116																					ENST00000225235.4:c.781G>A	p.Glu261Lys	p.E261K	ENST00000225235	NM_015188.1	261	Gag/Aag	0	
SLC22A12	116085		GRCh37	11	64360914	64360914	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR116																					ENST00000377574.1:c.544C>G	p.Gln182Glu	p.Q182E	ENST00000377574	NM_144585.3	182	Cag/Gag	0	
PDE3A	5139		GRCh37	12	20799489	20799489	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR116																					ENST00000359062.3:c.2317C>T	p.Pro773Ser	p.P773S	ENST00000359062	NM_001244683.1	773	Cca/Tca	0	
KRT83	3889		GRCh37	12	52710369	52710369	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR116																					ENST00000293670.3:c.924G>T	p.Glu308Asp	p.E308D	ENST00000293670	NM_002282.3	308	gaG/gaT	0	
MDGA2	161357		GRCh37	14	47613478	47613478	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BR116																					ENST00000399232.2:c.389-1G>C		p.X130_splice	ENST00000399232	NM_001113498.2	130		0	
SREBF1	6720		GRCh37	17	17717620	17717620	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR116																					ENST00000261646.5:c.2840A>T	p.Lys947Met	p.K947M	ENST00000261646	NM_004176.4	947	aAg/aTg	0	
NUFIP2	57532		GRCh37	17	27614410	27614410	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR116																					ENST00000225388.4:c.602G>C	p.Gly201Ala	p.G201A	ENST00000225388	NM_020772.2	201	gGt/gCt	0	
PRR19	284338		GRCh37	19	42814512	42814512	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR116																					ENST00000341747.3:c.691C>A	p.Gln231Lys	p.Q231K	ENST00000341747	NM_199285.2	231	Caa/Aaa	0	
TUBA8	51807		GRCh37	22	18604405	18604405	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR116																					ENST00000330423.3:c.163G>A	p.Glu55Lys	p.E55K	ENST00000330423	NM_018943.2	55	Gag/Aag	0	
OR2G3	81469		GRCh37	1	247768960	247768960	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR103																					ENST00000320002.2:c.73G>A	p.Ala25Thr	p.A25T	ENST00000320002	NM_001001914.1	25	Gct/Act	0	
EPB41L5	57669		GRCh37	2	120849208	120849208	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR103																					ENST00000263713.5:c.1121G>A	p.Arg374Gln	p.R374Q	ENST00000263713	NM_020909.3	374	cGa/cAa	0	
PCDHB8	56128		GRCh37	5	140559035	140559035	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR103																					ENST00000239444.2:c.1420G>A	p.Val474Ile	p.V474I	ENST00000239444	NM_019120.3	474	Gtc/Atc	0	
ZNF202	7753		GRCh37	11	123598895	123598895	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR103																					ENST00000336139.4:c.778G>T	p.Glu260Ter	p.E260*	ENST00000336139		260	Gag/Tag	0	
PWP1	11137		GRCh37	12	108096809	108096809	+	splice_donor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BR103																					ENST00000412830.3:c.903+1G>A		p.X301_splice	ENST00000412830	NM_007062.1	301		0	
SCAPER	49855		GRCh37	15	76673895	76673895	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR103																					ENST00000324767.7:c.3529G>A	p.Ala1177Thr	p.A1177T	ENST00000324767	NM_020843.2	1177	Gca/Aca	0	
NTHL1	4913		GRCh37	16	2090134	2090134	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR103																					ENST00000219066.1:c.815G>T	p.Arg272Met	p.R272M	ENST00000219066	NM_002528.5	272	aGg/aTg	0	
SGSH	6448		GRCh37	17	78188930	78188930	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR103																					ENST00000326317.6:c.257A>G	p.Asn86Ser	p.N86S	ENST00000326317	NM_000199.3	86	aAt/aGt	0	
TRIT1	54802		GRCh37	1	40310268	40310268	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR078																					ENST00000316891.5:c.1051G>A	p.Asp351Asn	p.D351N	ENST00000316891	NM_017646.4	351	Gat/Aat	0	
LPHN2			GRCh37	1	82372779	82372779	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR078																					ENST00000370717.2:c.151T>C	p.Cys51Arg	p.C51R	ENST00000370717		51	Tgc/Cgc	0	
TTLL7	79739		GRCh37	1	84386977	84386977	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR078																					ENST00000260505.8:c.1243G>T	p.Asp415Tyr	p.D415Y	ENST00000260505	NM_024686.4	415	Gac/Tac	0	
PXDN	7837		GRCh37	2	1638048	1638048	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR078																					ENST00000252804.4:c.4368T>G	p.Cys1456Trp	p.C1456W	ENST00000252804	NM_012293.1	1456	tgT/tgG	0	
LCLAT1	253558		GRCh37	2	30791033	30791033	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR078																					ENST00000309052.4:c.733C>G	p.Leu245Val	p.L245V	ENST00000309052	NM_182551.3	245	Cta/Gta	0	
UXS1	80146		GRCh37	2	106742088	106742088	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR078																					ENST00000409501.3:c.610G>T	p.Glu204Ter	p.E204*	ENST00000409501		204	Gag/Tag	0	
REST	5978		GRCh37	4	57776809	57776809	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR078																					ENST00000309042.7:c.5C>T	p.Ala2Val	p.A2V	ENST00000309042	NM_005612.4	2	gCc/gTc	0	
TNXB	7148		GRCh37	6	32029390	32029390	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR078																					ENST00000375244.3:c.7276T>G	p.Ser2426Ala	p.S2426A	ENST00000375244		2426	Tcg/Gcg	0	
WISP3			GRCh37	6	112382260	112382260	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR078																					ENST00000230529.5:c.115T>C	p.Ser39Pro	p.S39P	ENST00000230529	NM_003880.3	39	Tca/Cca	0	
SYNE1	23345		GRCh37	6	152644857	152644857	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR078																					ENST00000367255.5:c.15673G>A	p.Glu5225Lys	p.E5225K	ENST00000367255	NM_182961.3	5225	Gaa/Aaa	0	
CCDC71L	168455		GRCh37	7	106300706	106300706	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR078																					ENST00000523505.1:c.637G>A	p.Ala213Thr	p.A213T	ENST00000523505	NM_175884.4	213	Gcg/Acg	0	
LRRC4	64101		GRCh37	7	127669972	127669972	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR078																					ENST00000249363.3:c.722T>C	p.Leu241Pro	p.L241P	ENST00000249363	NM_022143.4	241	cTg/cCg	0	
ODF2	4957		GRCh37	9	131247080	131247080	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR078																					ENST00000434106.3:c.1205T>G	p.Leu402Trp	p.L402W	ENST00000434106	NM_153433.1	402	tTg/tGg	0	
TROAP	10024		GRCh37	12	49722992	49722992	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR078																					ENST00000257909.3:c.1069T>A	p.Phe357Ile	p.F357I	ENST00000257909	NM_005480.3	357	Ttc/Atc	0	
IKBIP	121457		GRCh37	12	99007391	99007391	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR078																					ENST00000342502.2:c.1025A>T	p.Glu342Val	p.E342V	ENST00000342502	NM_201612.2	342	gAa/gTa	0	
HERC1	8925		GRCh37	15	63908107	63908107	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR078																					ENST00000443617.2:c.13954G>C	p.Asp4652His	p.D4652H	ENST00000443617	NM_003922.3	4652	Gat/Cat	0	
CDH5	1003		GRCh37	16	66436612	66436612	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR078																					ENST00000341529.3:c.1895G>A	p.Gly632Asp	p.G632D	ENST00000341529	NM_001795.3	632	gGc/gAc	0	
SKAP1	8631		GRCh37	17	46262158	46262158	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR078																					ENST00000336915.6:c.494C>T	p.Ala165Val	p.A165V	ENST00000336915	NM_003726.3	165	gCc/gTc	0	
ST6GALNAC1	55808		GRCh37	17	74622086	74622086	+	splice_donor_variant	Splice_Site	SNP	A	A	T			brca_smc_2018_BR078																					ENST00000156626.7:c.1505+2T>A		p.X502_splice	ENST00000156626	NM_018414.3	502		0	
MAST1	22983		GRCh37	19	12951316	12951316	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR078																					ENST00000251472.4:c.140C>T	p.Pro47Leu	p.P47L	ENST00000251472	NM_014975.2	47	cCg/cTg	0	
ZNF536	9745		GRCh37	19	31038967	31038967	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR078																					ENST00000355537.3:c.2441G>T	p.Gly814Val	p.G814V	ENST00000355537	NM_014717.1	814	gGg/gTg	0	
SLC17A7	57030		GRCh37	19	49937275	49937275	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR078																					ENST00000221485.3:c.666G>A	p.Met222Ile	p.M222I	ENST00000221485	NM_020309.3	222	atG/atA	0	
HUWE1	10075		GRCh37	X	53641598	53641598	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR078																					ENST00000262854.6:c.2158C>T	p.His720Tyr	p.H720Y	ENST00000262854	NM_031407.5	720	Cat/Tat	0	
PROKR1	10887		GRCh37	2	68882591	68882591	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR183																					ENST00000303786.3:c.1065G>C	p.Lys355Asn	p.K355N	ENST00000303786		355	aaG/aaC	0	
STXBP5L	9515		GRCh37	3	120998651	120998651	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BR183																					ENST00000273666.6:c.1959-1G>C		p.X653_splice	ENST00000273666	NM_014980.2	653		0	
HERC5	51191		GRCh37	4	89415479	89415479	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR183																					ENST00000264350.3:c.2441G>A	p.Gly814Glu	p.G814E	ENST00000264350	NM_016323.3	814	gGa/gAa	0	
CDYL	9425		GRCh37	6	4943779	4943779	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BR183																					ENST00000328908.5:c.1284-1G>C		p.X428_splice	ENST00000328908		428		0	
LPL	4023		GRCh37	8	19811840	19811840	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR183																					ENST00000311322.8:c.751G>C	p.Val251Leu	p.V251L	ENST00000311322	NM_000237.2	251	Gtg/Ctg	0	
TTC40			GRCh37	10	134754525	134754525	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR183																					ENST00000368586.5:c.346A>T	p.Ile116Leu	p.I116L	ENST00000368586	NM_001200049.2	116	Ata/Tta	0	
AGAP2	116986		GRCh37	12	58128128	58128128	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR183																					ENST00000547588.1:c.1375G>C	p.Glu459Gln	p.E459Q	ENST00000547588	NM_001122772.2	459	Gag/Cag	0	
PIGW	284098		GRCh37	17	34894287	34894287	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR183																					ENST00000592983.1:c.1337G>A	p.Arg446Lys	p.R446K	ENST00000592983		446	aGa/aAa	0	
PCNT	5116		GRCh37	21	47860796	47860796	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR183																					ENST00000359568.5:c.9422G>C	p.Arg3141Thr	p.R3141T	ENST00000359568	NM_006031.5	3141	aGa/aCa	0	
DARS2	55157		GRCh37	1	173814415	173814415	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR017																					ENST00000361951.4:c.1177G>C	p.Asp393His	p.D393H	ENST00000361951	NM_018122.4	393	Gac/Cac	0	
ADCY3	109		GRCh37	2	25061349	25061349	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR017																					ENST00000260600.5:c.1498A>G	p.Lys500Glu	p.K500E	ENST00000260600	NM_004036.3	500	Aag/Gag	0	
CTNNA2	1496		GRCh37	2	80101302	80101302	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR017																					ENST00000402739.4:c.686G>A	p.Arg229His	p.R229H	ENST00000402739	NM_001282597.1	229	cGc/cAc	0	
TTN	7273		GRCh37	2	179466128	179466128	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR017																					ENST00000591111.1:c.50673C>A	p.Asp16891Glu	p.D16891E	ENST00000591111		16891	gaC/gaA	0	
CRYGA	1418		GRCh37	2	209025725	209025725	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR017																					ENST00000304502.4:c.328G>A	p.Ala110Thr	p.A110T	ENST00000304502	NM_014617.3	110	Gcc/Acc	0	
EOMES	8320		GRCh37	3	27758816	27758816	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR017																					ENST00000295743.4:c.1806A>C	p.Glu602Asp	p.E602D	ENST00000295743	NM_005442.3	602	gaA/gaC	0	
ZNF619	285267		GRCh37	3	40528977	40528977	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR017																					ENST00000314686.5:c.928A>C	p.Ser310Arg	p.S310R	ENST00000314686		310	Agt/Cgt	0	
QTRTD1			GRCh37	3	113798887	113798887	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR017																					ENST00000281273.4:c.881C>G	p.Pro294Arg	p.P294R	ENST00000281273	NM_024638.3	294	cCg/cGg	0	
LPHN3			GRCh37	4	62775308	62775308	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR017																					ENST00000514591.1:c.1714G>T	p.Ala572Ser	p.A572S	ENST00000514591		572	Gct/Tct	0	
WDFY3	23001		GRCh37	4	85715705	85715705	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR017																					ENST00000295888.4:c.3454G>T	p.Val1152Phe	p.V1152F	ENST00000295888	NM_014991.4	1152	Gtt/Ttt	0	
C6	729		GRCh37	5	41176617	41176617	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR017																					ENST00000263413.3:c.1128C>A	p.Asp376Glu	p.D376E	ENST00000263413	NM_001115131.2	376	gaC/gaA	0	
GHR	2690		GRCh37	5	42695164	42695164	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR017																					ENST00000230882.4:c.412G>T	p.Glu138Ter	p.E138*	ENST00000230882	NM_001242406.2	138	Gaa/Taa	0	
GHR	2690		GRCh37	5	42695165	42695165	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR017																					ENST00000230882.4:c.413A>C	p.Glu138Ala	p.E138A	ENST00000230882	NM_001242406.2	138	gAa/gCa	0	
ATXN1	6310		GRCh37	6	16306955	16306955	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR017																					ENST00000244769.4:c.2053C>T	p.Leu685Phe	p.L685F	ENST00000244769	NM_000332.3	685	Ctt/Ttt	0	
NFKBIL1	4795		GRCh37	6	31526204	31526204	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR017																					ENST00000376148.4:c.962G>T	p.Gly321Val	p.G321V	ENST00000376148	NM_005007.3	321	gGc/gTc	0	
CSNK2B	1460		GRCh37	6	31636873	31636873	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BR017																					ENST00000375865.2:c.292-1G>C		p.X98_splice	ENST00000375865		98		0	
NT5E	4907		GRCh37	6	86181095	86181095	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR017																					ENST00000257770.3:c.703G>T	p.Gly235Cys	p.G235C	ENST00000257770	NM_002526.3	235	Ggt/Tgt	0	
COQ3	51805		GRCh37	6	99828163	99828163	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR017																					ENST00000254759.3:c.288G>C	p.Glu96Asp	p.E96D	ENST00000254759	NM_017421.3	96	gaG/gaC	0	
SYNE1	23345		GRCh37	6	152737937	152737937	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR017																					ENST00000367255.5:c.5635T>G	p.Ser1879Ala	p.S1879A	ENST00000367255	NM_182961.3	1879	Tct/Gct	0	
IGF2R	3482		GRCh37	6	160494966	160494966	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR017																					ENST00000356956.1:c.5125G>A	p.Gly1709Arg	p.G1709R	ENST00000356956	NM_000876.2	1709	Gga/Aga	0	
PTCD1	26024		GRCh37	7	99023187	99023187	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR017																					ENST00000292478.4:c.968A>G	p.Asn323Ser	p.N323S	ENST00000292478	NM_015545.3	323	aAc/aGc	0	
EPO	2056		GRCh37	7	100319277	100319277	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR017																					ENST00000252723.2:c.110G>T	p.Arg37Leu	p.R37L	ENST00000252723	NM_000799.2	37	cGa/cTa	0	
ZNF775	285971		GRCh37	7	150094634	150094634	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR017																					ENST00000329630.5:c.1065C>G	p.His355Gln	p.H355Q	ENST00000329630	NM_173680.3	355	caC/caG	0	
PSD3	23362		GRCh37	8	18729967	18729967	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR017																					ENST00000440756.2:c.407C>A	p.Ser136Ter	p.S136*	ENST00000440756		136	tCa/tAa	0	
RP11-863K10.7			GRCh37	8	37593814	37593814	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR017																					ENST00000330539.1:c.202G>T	p.Gly68Ter	p.G68*	ENST00000330539		68	Gga/Tga	0	
KCNA4	3739		GRCh37	11	30033933	30033933	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR017																					ENST00000328224.6:c.293G>A	p.Arg98Gln	p.R98Q	ENST00000328224	NM_002233.3	98	cGg/cAg	0	
C11orf30			GRCh37	11	76237544	76237544	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR017																					ENST00000334736.3:c.1860G>C	p.Lys620Asn	p.K620N	ENST00000334736	NM_020193.3	620	aaG/aaC	0	
TMPO	7112		GRCh37	12	98927156	98927156	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR017																					ENST00000266732.4:c.1121C>T	p.Ala374Val	p.A374V	ENST00000266732	NM_003276.2	374	gCc/gTc	0	
CCDC60	160777		GRCh37	12	119909929	119909929	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR017																					ENST00000327554.2:c.301G>A	p.Glu101Lys	p.E101K	ENST00000327554	NM_178499.3	101	Gaa/Aaa	0	
MYCBP2	23077		GRCh37	13	77748564	77748564	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR017																					ENST00000357337.6:c.5419G>A	p.Gly1807Arg	p.G1807R	ENST00000357337		1807	Gga/Aga	0	
ISCA2	122961		GRCh37	14	74960984	74960984	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR017																					ENST00000556816.1:c.181T>A	p.Leu61Met	p.L61M	ENST00000556816	NM_194279.3	61	Ttg/Atg	0	
DYNC1H1	1778		GRCh37	14	102431056	102431056	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR017																					ENST00000360184.4:c.28G>A	p.Glu10Lys	p.E10K	ENST00000360184	NM_001376.4	10	Gag/Aag	0	
ADAMTSL3	57188		GRCh37	15	84683294	84683294	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR017																					ENST00000286744.5:c.3974G>T	p.Gly1325Val	p.G1325V	ENST00000286744	NM_207517.2	1325	gGt/gTt	0	
BCKDK	10295		GRCh37	16	31121021	31121021	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR017																					ENST00000219794.6:c.292C>T	p.Leu98Phe	p.L98F	ENST00000219794	NM_005881.3	98	Ctt/Ttt	0	
MYH8	4626		GRCh37	17	10300125	10300125	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR017																					ENST00000403437.2:c.4357G>A	p.Asp1453Asn	p.D1453N	ENST00000403437	NM_002472.2	1453	Gac/Aac	0	
PGS1	9489		GRCh37	17	76396920	76396920	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR017																					ENST00000262764.6:c.864G>A	p.Met288Ile	p.M288I	ENST00000262764	NM_024419.3	288	atG/atA	0	
TSPAN10	83882		GRCh37	17	79609459	79609459	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR017																					ENST00000328585.4:c.21C>A	p.Ser7Arg	p.S7R	ENST00000328585	NM_031945.3	7	agC/agA	0	
ZNF844	284391		GRCh37	19	12186212	12186212	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR017																					ENST00000439326.3:c.277A>T	p.Asn93Tyr	p.N93Y	ENST00000439326	NM_001136501.1	93	Aac/Tac	0	
SLC1A6	6511		GRCh37	19	15061128	15061128	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR017																					ENST00000221742.3:c.1574G>A	p.Arg525Gln	p.R525Q	ENST00000221742	NM_005071.2	525	cGg/cAg	0	
C19orf69			GRCh37	19	41949192	41949192	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR017																					ENST00000378187.2:c.118G>A	p.Ala40Thr	p.A40T	ENST00000378187	NM_001130514.1	40	Gca/Aca	0	
NLRP4	147945		GRCh37	19	56379149	56379149	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR017																					ENST00000301295.6:c.2261C>T	p.Thr754Met	p.T754M	ENST00000301295	NM_134444.4	754	aCg/aTg	0	
ZNF304	57343		GRCh37	19	57868646	57868646	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR017																					ENST00000282286.5:c.1409C>A	p.Thr470Asn	p.T470N	ENST00000282286		470	aCt/aAt	0	
PPP1R3D	5509		GRCh37	20	58514407	58514407	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR017																					ENST00000370996.3:c.580C>G	p.Arg194Gly	p.R194G	ENST00000370996	NM_006242.3	194	Cgc/Ggc	0	
BID	637		GRCh37	22	18226771	18226771	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR017																					ENST00000399774.3:c.21C>G	p.Asn7Lys	p.N7K	ENST00000399774	NM_001244569.1	7	aaC/aaG	0	
RBMXL3	139804		GRCh37	X	114426430	114426430	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR017																					ENST00000424776.3:c.2426A>G	p.Asn809Ser	p.N809S	ENST00000424776	NM_001145346.1	809	aAc/aGc	0	
RBMXL3	139804		GRCh37	X	114426431	114426431	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR017																					ENST00000424776.3:c.2427C>A	p.Asn809Lys	p.N809K	ENST00000424776	NM_001145346.1	809	aaC/aaA	0	
CLCN6	1185		GRCh37	1	11888241	11888241	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR135																					ENST00000346436.6:c.919C>G	p.Gln307Glu	p.Q307E	ENST00000346436	NM_001286.3	307	Cag/Gag	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR135																					ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt	0	
SLC2A9	56606		GRCh37	4	9998522	9998522	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR135																					ENST00000264784.3:c.293G>A	p.Gly98Glu	p.G98E	ENST00000264784	NM_020041.2	98	gGa/gAa	0	
PCDHA8	56140		GRCh37	5	140221669	140221669	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR135																					ENST00000531613.1:c.763G>A	p.Ala255Thr	p.A255T	ENST00000531613	NM_018911.2	255	Gca/Aca	0	
TNS3	64759		GRCh37	7	47385813	47385813	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR135																					ENST00000311160.9:c.2423C>T	p.Pro808Leu	p.P808L	ENST00000311160	NM_022748.11	808	cCa/cTa	0	
PDCD1LG2	80380		GRCh37	9	5534943	5534943	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR135																					ENST00000397747.3:c.254C>G	p.Ala85Gly	p.A85G	ENST00000397747	NM_025239.3	85	gCc/gGc	0	
QSER1	79832		GRCh37	11	32954857	32954857	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR135																					ENST00000399302.2:c.1666C>A	p.Pro556Thr	p.P556T	ENST00000399302	NM_001076786.1	556	Cca/Aca	0	
VPS13C	54832		GRCh37	15	62316028	62316028	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR135																					ENST00000261517.5:c.465G>T	p.Lys155Asn	p.K155N	ENST00000261517	NM_020821.2	155	aaG/aaT	0	
R3HDML	140902		GRCh37	20	42973912	42973912	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR135																					ENST00000217043.2:c.523G>A	p.Ala175Thr	p.A175T	ENST00000217043	NM_178491.3	175	Gca/Aca	0	
F5	2153		GRCh37	1	169512088	169512088	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR159																					ENST00000367797.3:c.2240A>C	p.Glu747Ala	p.E747A	ENST00000367797	NM_000130.4	747	gAa/gCa	0	
KDM5B	10765		GRCh37	1	202725494	202725494	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR159																					ENST00000367265.3:c.1348G>C	p.Glu450Gln	p.E450Q	ENST00000367265	NM_006618.3	450	Gag/Cag	0	
PLEKHA6	22874		GRCh37	1	204199626	204199626	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR159																					ENST00000272203.3:c.2498G>C	p.Ser833Thr	p.S833T	ENST00000272203	NM_014935.4	833	aGt/aCt	0	
PTRHD1	391356		GRCh37	2	25016005	25016005	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR159																					ENST00000328379.5:c.242T>C	p.Val81Ala	p.V81A	ENST00000328379	NM_001013663.1	81	gTg/gCg	0	
CCDC104			GRCh37	2	55750882	55750882	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR159																					ENST00000349456.4:c.206T>G	p.Leu69Arg	p.L69R	ENST00000349456		69	cTc/cGc	0	
GLI2	2736		GRCh37	2	121746084	121746084	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR159																					ENST00000361492.4:c.2594G>A	p.Arg865His	p.R865H	ENST00000361492	NM_005270.4	865	cGc/cAc	0	
MYO7B	4648		GRCh37	2	128380819	128380819	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR159																					ENST00000409816.2:c.3610G>T	p.Ala1204Ser	p.A1204S	ENST00000409816		1204	Gcc/Tcc	0	
XIRP2	129446		GRCh37	2	168101078	168101078	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR159																					ENST00000409195.1:c.3176T>A	p.Phe1059Tyr	p.F1059Y	ENST00000409195	NM_152381.5	1059	tTt/tAt	0	
STAT1	6772		GRCh37	2	191851763	191851763	+	splice_donor_variant	Splice_Site	SNP	A	A	C			brca_smc_2018_BR159																					ENST00000361099.3:c.1127+2T>G		p.X376_splice	ENST00000361099	NM_007315.3	376		0	
TIGIT	201633		GRCh37	3	114014507	114014507	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR159																					ENST00000383671.3:c.177G>C	p.Trp59Cys	p.W59C	ENST00000383671	NM_173799.3	59	tgG/tgC	0	
SLIT2	9353		GRCh37	4	20597339	20597339	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR159																					ENST00000504154.1:c.3202T>A	p.Tyr1068Asn	p.Y1068N	ENST00000504154	NM_004787.1	1068	Tac/Aac	0	
PCDHA9	9752		GRCh37	5	140230266	140230266	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR159																					ENST00000532602.1:c.2186A>G	p.Glu729Gly	p.E729G	ENST00000532602	NM_031857.1	729	gAg/gGg	0	
GFOD1	54438		GRCh37	6	13365558	13365558	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR159																					ENST00000379287.3:c.590G>C	p.Gly197Ala	p.G197A	ENST00000379287	NM_018988.3	197	gGg/gCg	0	
HIST1H1E	3008		GRCh37	6	26156982	26156982	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			brca_smc_2018_BR159																					ENST00000304218.3:c.364A>T	p.Lys122Ter	p.K122*	ENST00000304218	NM_005321.2	122	Aag/Tag	0	
COL11A2	1302		GRCh37	6	33147058	33147058	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR159																					ENST00000374708.4:c.1249C>A	p.Gln417Lys	p.Q417K	ENST00000374708	NM_080681.2	417	Caa/Aaa	0	
VWDE	221806		GRCh37	7	12397090	12397090	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR159																					ENST00000275358.3:c.3326A>G	p.Tyr1109Cys	p.Y1109C	ENST00000275358	NM_001135924.1	1109	tAt/tGt	0	
C7orf33	202865		GRCh37	7	148288129	148288129	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR159																					ENST00000307003.2:c.112C>T	p.Leu38Phe	p.L38F	ENST00000307003	NM_145304.2	38	Ctt/Ttt	0	
COL22A1	169044		GRCh37	8	139703071	139703071	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR159																					ENST00000303045.6:c.2801G>T	p.Gly934Val	p.G934V	ENST00000303045	NM_152888.1	934	gGa/gTa	0	
GSN	2934		GRCh37	9	124074749	124074749	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR159																					ENST00000373818.4:c.799C>T	p.Pro267Ser	p.P267S	ENST00000373818	NM_000177.4	267	Ccc/Tcc	0	
BICC1	80114		GRCh37	10	60549517	60549517	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR159																					ENST00000373886.3:c.871A>G	p.Ile291Val	p.I291V	ENST00000373886	NM_001080512.1	291	Att/Gtt	0	
VCL	7414		GRCh37	10	75866990	75866990	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR159																					ENST00000211998.4:c.2437C>G	p.Leu813Val	p.L813V	ENST00000211998	NM_014000.2	813	Ctg/Gtg	0	
STX3	6809		GRCh37	11	59540741	59540741	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR159																					ENST00000337979.4:c.88G>A	p.Ala30Thr	p.A30T	ENST00000337979	NM_001178040.1	30	Gct/Act	0	
PPFIA2	8499		GRCh37	12	81768472	81768472	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR159																					ENST00000549396.1:c.1207G>A	p.Ala403Thr	p.A403T	ENST00000549396	NM_003625.3	403	Gct/Act	0	
MAP1A	4130		GRCh37	15	43815202	43815202	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR159																					ENST00000300231.5:c.1531A>T	p.Thr511Ser	p.T511S	ENST00000300231		511	Act/Tct	0	
MAP2K4	6416		GRCh37	17	12032591	12032591	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR159																					ENST00000353533.5:c.1027T>C	p.Phe343Leu	p.F343L	ENST00000353533	NM_003010.3	343	Ttt/Ctt	0	
SLC6A4	6532		GRCh37	17	28548966	28548966	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR159																					ENST00000261707.3:c.11C>T	p.Thr4Met	p.T4M	ENST00000261707	NM_001045.5	4	aCg/aTg	0	
RNF43	54894		GRCh37	17	56448279	56448279	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR159																					ENST00000407977.2:c.368C>A	p.Ala123Asp	p.A123D	ENST00000407977		123	gCt/gAt	0	
ST6GALNAC1	55808		GRCh37	17	74622375	74622375	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR159																					ENST00000156626.7:c.1411T>C	p.Phe471Leu	p.F471L	ENST00000156626	NM_018414.3	471	Ttc/Ctc	0	
EPHX3	79852		GRCh37	19	15342585	15342585	+	splice_donor_variant	Splice_Site	SNP	A	A	T			brca_smc_2018_BR159																					ENST00000221730.3:c.329+2T>A		p.X110_splice	ENST00000221730	NM_024794.2	110		0	
ZNF256	10172		GRCh37	19	58453850	58453850	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR159																					ENST00000282308.3:c.326A>T	p.Gln109Leu	p.Q109L	ENST00000282308	NM_005773.2	109	cAa/cTa	0	
AR	367		GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR159																					ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg	0	
GPR112			GRCh37	X	135405134	135405134	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR159																					ENST00000370652.1:c.268C>G	p.Leu90Val	p.L90V	ENST00000370652		90	Ctt/Gtt	0	
CD47	961		GRCh37	3	107799067	107799067	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR038																					ENST00000361309.5:c.171G>C	p.Lys57Asn	p.K57N	ENST00000361309	NM_001777.3	57	aaG/aaC	0	
ETV5	2119		GRCh37	3	185823498	185823498	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR038																					ENST00000306376.5:c.49T>C	p.Ser17Pro	p.S17P	ENST00000306376	NM_004454.2	17	Tct/Cct	0	
PCDH10	57575		GRCh37	4	134073809	134073809	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR038																					ENST00000264360.5:c.2514G>C	p.Lys838Asn	p.K838N	ENST00000264360	NM_032961.1	838	aaG/aaC	0	
PIK3R1	5295		GRCh37	5	67589633	67589633	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR038																					ENST00000521381.1:c.1396T>G	p.Leu466Val	p.L466V	ENST00000521381	NM_181523.2	466	Tta/Gta	0	
NCR3LG1	374383		GRCh37	11	17393953	17393953	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR038																					ENST00000338965.4:c.1259C>A	p.Ala420Asp	p.A420D	ENST00000338965	NM_001202439.1	420	gCc/gAc	0	
KMT2D	8085		GRCh37	12	49427408	49427408	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR038																					ENST00000301067.7:c.11080G>A	p.Gly3694Ser	p.G3694S	ENST00000301067	NM_003482.3	3694	Ggc/Agc	0	
GLT1D1	144423		GRCh37	12	129360542	129360542	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR038																					ENST00000442111.2:c.152T>C	p.Ile51Thr	p.I51T	ENST00000442111		51	aTc/aCc	0	
PCDH20	64881		GRCh37	13	61987706	61987706	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR038																					ENST00000409186.1:c.526T>C	p.Cys176Arg	p.C176R	ENST00000409186		176	Tgt/Cgt	0	
TEP1	7011		GRCh37	14	20852387	20852387	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR038																					ENST00000262715.5:c.3344G>T	p.Gly1115Val	p.G1115V	ENST00000262715	NM_007110.4	1115	gGg/gTg	0	
AP5M1	55745		GRCh37	14	57741276	57741276	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR038																					ENST00000261558.3:c.389A>T	p.Gln130Leu	p.Q130L	ENST00000261558	NM_018229.3	130	cAa/cTa	0	
FBXL20	84961		GRCh37	17	37420523	37420523	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR038																					ENST00000264658.6:c.1108G>A	p.Ala370Thr	p.A370T	ENST00000264658	NM_032875.2	370	Gca/Aca	0	
SOX9	6662		GRCh37	17	70119839	70119839	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR038																					ENST00000245479.2:c.841G>A	p.Asp281Asn	p.D281N	ENST00000245479	NM_000346.3	281	Gac/Aac	0	
TMEM200C	645369		GRCh37	18	5890438	5890438	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR038																					ENST00000383490.2:c.1625A>T	p.Glu542Val	p.E542V	ENST00000383490	NM_001080209.1	542	gAg/gTg	0	
LOXHD1	125336		GRCh37	18	44126912	44126912	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR038																					ENST00000300591.6:c.127G>T	p.Gly43Cys	p.G43C	ENST00000300591	NM_001145472.2	43	Ggt/Tgt	0	
HSPB6	126393		GRCh37	19	36247893	36247893	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR038																					ENST00000004982.3:c.17C>T	p.Pro6Leu	p.P6L	ENST00000004982	NM_144617.2	6	cCt/cTt	0	
SIPA1L3	23094		GRCh37	19	38632032	38632032	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR038																					ENST00000222345.6:c.3352C>A	p.Pro1118Thr	p.P1118T	ENST00000222345	NM_015073.1	1118	Ccc/Acc	0	
PTPRT	11122		GRCh37	20	40790111	40790111	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR038																					ENST00000373187.1:c.2563C>A	p.Pro855Thr	p.P855T	ENST00000373187		855	Cct/Act	0	
ARSH	347527		GRCh37	X	2933164	2933164	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR038																					ENST00000381130.2:c.494T>A	p.Ile165Asn	p.I165N	ENST00000381130	NM_001011719.1	165	aTc/aAc	0	
RPS6KA3	6197		GRCh37	X	20284734	20284734	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR038																					ENST00000379565.3:c.17T>C	p.Leu6Pro	p.L6P	ENST00000379565	NM_004586.2	6	cTg/cCg	0	
ATP6AP2	10159		GRCh37	X	40458868	40458868	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR038																					ENST00000378438.4:c.613A>G	p.Lys205Glu	p.K205E	ENST00000378438	NM_005765.2	205	Aag/Gag	0	
ERCC6L	54821		GRCh37	X	71427928	71427928	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR038																					ENST00000334463.3:c.689C>T	p.Ala230Val	p.A230V	ENST00000334463	NM_017669.2	230	gCa/gTa	0	
MAP7D3	79649		GRCh37	X	135326889	135326889	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR038																					ENST00000316077.9:c.319G>T	p.Glu107Ter	p.E107*	ENST00000316077	NM_024597.3	107	Gag/Tag	0	
NBL1	4681		GRCh37	1	19981917	19981917	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR097																					ENST00000375136.3:c.271A>G	p.Met91Val	p.M91V	ENST00000375136	NM_005380.7	91	Atg/Gtg	0	
HIVEP3	59269		GRCh37	1	42041278	42041278	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000247584.5:c.5144C>T	p.Pro1715Leu	p.P1715L	ENST00000247584		1715	cCg/cTg	0	
CCDC30	728621		GRCh37	1	43031968	43031968	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR097																					ENST00000340612.4:c.677A>T	p.His226Leu	p.H226L	ENST00000340612		226	cAt/cTt	0	
CYR61			GRCh37	1	86047106	86047106	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR097																					ENST00000451137.2:c.122C>G	p.Pro41Arg	p.P41R	ENST00000451137	NM_001554.4	41	cCg/cGg	0	
GSTM5	2949		GRCh37	1	110257758	110257758	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR097																					ENST00000256593.3:c.463T>C	p.Phe155Leu	p.F155L	ENST00000256593	NM_000851.3	155	Ttt/Ctt	0	
SPTA1	6708		GRCh37	1	158596694	158596694	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR097																					ENST00000368147.4:c.5768A>T	p.Gln1923Leu	p.Q1923L	ENST00000368147	NM_003126.2	1923	cAa/cTa	0	
UAP1	6675		GRCh37	1	162569079	162569079	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR097																					ENST00000271469.3:c.1495G>T	p.Ala499Ser	p.A499S	ENST00000271469		499	Gca/Tca	0	
MROH9	80133		GRCh37	1	170967327	170967327	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000367758.3:c.1508C>T	p.Pro503Leu	p.P503L	ENST00000367758	NM_025063.2	503	cCg/cTg	0	
LAMC1	3915		GRCh37	1	183079727	183079727	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR097																					ENST00000258341.4:c.959T>G	p.Leu320Arg	p.L320R	ENST00000258341	NM_002293.3	320	cTt/cGt	0	
RGS13	6003		GRCh37	1	192627369	192627369	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR097																					ENST00000391995.2:c.166C>A	p.His56Asn	p.H56N	ENST00000391995	NM_002927.4	56	Cac/Aac	0	
ASPM	259266		GRCh37	1	197071435	197071435	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR097																					ENST00000367409.4:c.6946A>G	p.Ile2316Val	p.I2316V	ENST00000367409	NM_018136.4	2316	Att/Gtt	0	
IGFN1	91156		GRCh37	1	201175822	201175822	+	5_prime_UTR_variant	5'UTR	SNP	C	C	A			brca_smc_2018_BR097																					ENST00000295591.8:c.-6720C>A		p.*2240*	ENST00000295591				0	
MARCH1	64757		GRCh37	1	220969991	220969991	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR097																					ENST00000366910.5:c.456C>A	p.His152Gln	p.H152Q	ENST00000366910	NM_022746.3	152	caC/caA	0	
URB2	9816		GRCh37	1	229768086	229768086	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR097																					ENST00000258243.2:c.197T>C	p.Ile66Thr	p.I66T	ENST00000258243	NM_014777.2	66	aTt/aCt	0	
CAMKMT	79823		GRCh37	2	44589262	44589262	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000378494.3:c.116C>T	p.Ala39Val	p.A39V	ENST00000378494	NM_024766.4	39	gCc/gTc	0	
CAMKMT	79823		GRCh37	2	44599900	44599900	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR097																					ENST00000378494.3:c.184G>T	p.Val62Leu	p.V62L	ENST00000378494	NM_024766.4	62	Gta/Tta	0	
USP34	9736		GRCh37	2	61538683	61538683	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR097																					ENST00000398571.2:c.3809A>T	p.Glu1270Val	p.E1270V	ENST00000398571	NM_014709.3	1270	gAg/gTg	0	
IFIH1	64135		GRCh37	2	163137887	163137887	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000263642.2:c.1475G>A	p.Gly492Asp	p.G492D	ENST00000263642	NM_022168.3	492	gGt/gAt	0	
TTN	7273		GRCh37	2	179418282	179418282	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR097																					ENST00000591111.1:c.84527G>C	p.Gly28176Ala	p.G28176A	ENST00000591111		28176	gGa/gCa	0	
BMPR2	659		GRCh37	2	203395544	203395544	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000374580.4:c.995G>A	p.Arg332Gln	p.R332Q	ENST00000374580	NM_001204.6	332	cGa/cAa	0	
UNC80	285175		GRCh37	2	210703977	210703977	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000439458.1:c.3073C>T	p.Arg1025Trp	p.R1025W	ENST00000439458	NM_032504.1	1025	Cgg/Tgg	0	
ATG9A	79065		GRCh37	2	220091656	220091656	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000361242.4:c.148-1C>T		p.X50_splice	ENST00000361242	NM_001077198.1	50		0	
KIAA2018			GRCh37	3	113377522	113377522	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000316407.4:c.3007G>A	p.Gly1003Ser	p.G1003S	ENST00000316407	NM_001009899.2	1003	Ggt/Agt	0	
CASR	846		GRCh37	3	122003189	122003189	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR097																					ENST00000490131.1:c.2388G>T	p.Lys796Asn	p.K796N	ENST00000490131	NM_000388.3	796	aaG/aaT	0	
MYLK	4638		GRCh37	3	123376270	123376270	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR097																					ENST00000360304.3:c.3991C>A	p.Pro1331Thr	p.P1331T	ENST00000360304	NM_053025.3	1331	Cca/Aca	0	
EFCAB12	90288		GRCh37	3	129140544	129140544	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000326085.3:c.152G>A	p.Arg51His	p.R51H	ENST00000326085		51	cGc/cAc	0	
MED12L	116931		GRCh37	3	150845655	150845655	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR097																					ENST00000474524.1:c.440C>G	p.Ala147Gly	p.A147G	ENST00000474524	NM_053002.4	147	gCt/gGt	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR097																					ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt	0	
HTR3C	170572		GRCh37	3	183774688	183774688	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000318351.1:c.415G>A	p.Gly139Ser	p.G139S	ENST00000318351	NM_130770.2	139	Ggt/Agt	0	
TPRG1	285386		GRCh37	3	189028179	189028179	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR097																					ENST00000345063.3:c.484C>A	p.Gln162Lys	p.Q162K	ENST00000345063	NM_198485.3	162	Caa/Aaa	0	
CEP135	9662		GRCh37	4	56886856	56886856	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000257287.4:c.3230G>A	p.Arg1077Gln	p.R1077Q	ENST00000257287	NM_025009.4	1077	cGg/cAg	0	
YTHDC1	91746		GRCh37	4	69179894	69179894	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000344157.4:c.2107C>T	p.Arg703Cys	p.R703C	ENST00000344157	NM_001031732.2	703	Cgt/Tgt	0	
TMPRSS11E	28983		GRCh37	4	69340463	69340463	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR097																					ENST00000305363.4:c.513C>G	p.Asp171Glu	p.D171E	ENST00000305363	NM_014058.3	171	gaC/gaG	0	
TMEM150C	441027		GRCh37	4	83417322	83417322	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR097																					ENST00000449862.2:c.262A>C	p.Ile88Leu	p.I88L	ENST00000449862	NM_001080506.1	88	Ata/Cta	0	
NUDT9	53343		GRCh37	4	88372811	88372811	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR097																					ENST00000302174.4:c.713C>A	p.Ser238Tyr	p.S238Y	ENST00000302174	NM_024047.4	238	tCc/tAc	0	
SLC6A19	340024		GRCh37	5	1219196	1219196	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000304460.10:c.1352C>T	p.Pro451Leu	p.P451L	ENST00000304460	NM_001003841.2	451	cCg/cTg	0	
KIAA0947			GRCh37	5	5463499	5463499	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR097																					ENST00000296564.7:c.4052A>G	p.Asp1351Gly	p.D1351G	ENST00000296564	NM_015325.2	1351	gAt/gGt	0	
CDH18	1016		GRCh37	5	19612711	19612711	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			brca_smc_2018_BR097																					ENST00000274170.4:c.644-1G>T		p.X215_splice	ENST00000274170		215		0	
PRDM9	56979		GRCh37	5	23527796	23527796	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000296682.3:c.2599C>T	p.Arg867Trp	p.R867W	ENST00000296682	NM_020227.2	867	Cgg/Tgg	0	
CAPSL	133690		GRCh37	5	35904706	35904706	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000397366.1:c.568G>A	p.Ala190Thr	p.A190T	ENST00000397366	NM_001042625.1	190	Gca/Aca	0	
C5orf42			GRCh37	5	37169555	37169555	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000425232.2:c.6571C>T	p.Pro2191Ser	p.P2191S	ENST00000425232	NM_023073.3	2191	Cct/Tct	0	
RICTOR	253260		GRCh37	5	39074437	39074437	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR097																					ENST00000357387.3:c.43G>C	p.Val15Leu	p.V15L	ENST00000357387	NM_152756.3	15	Gta/Cta	0	
WDR41	55255		GRCh37	5	76736742	76736742	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000296679.4:c.778C>T	p.Arg260Cys	p.R260C	ENST00000296679	NM_018268.2	260	Cgc/Tgc	0	
HSPA4	3308		GRCh37	5	132439658	132439658	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR097																					ENST00000304858.2:c.2259C>G	p.Asn753Lys	p.N753K	ENST00000304858	NM_002154.3	753	aaC/aaG	0	
DSP	1832		GRCh37	6	7583197	7583197	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000379802.3:c.5702G>A	p.Arg1901Lys	p.R1901K	ENST00000379802	NM_004415.2	1901	aGa/aAa	0	
SLC17A3	10786		GRCh37	6	25861896	25861896	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR097																					ENST00000360657.3:c.347G>T	p.Gly116Val	p.G116V	ENST00000360657		116	gGc/gTc	0	
UHRF1BP1	54887		GRCh37	6	34838875	34838875	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR097																					ENST00000192788.5:c.3963C>G	p.Asn1321Lys	p.N1321K	ENST00000192788	NM_017754.3	1321	aaC/aaG	0	
CEP85L	387119		GRCh37	6	118786642	118786642	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR097																					ENST00000368491.3:c.2344G>C	p.Asp782His	p.D782H	ENST00000368491	NM_001042475.2	782	Gac/Cac	0	
HEY2	23493		GRCh37	6	126080352	126080352	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000368364.3:c.418G>A	p.Val140Met	p.V140M	ENST00000368364	NM_012259.2	140	Gtg/Atg	0	
INTS1	26173		GRCh37	7	1524774	1524774	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000404767.3:c.3221C>T	p.Thr1074Met	p.T1074M	ENST00000404767	NM_001080453.2	1074	aCg/aTg	0	
GNAI1	2770		GRCh37	7	79833051	79833051	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR097																					ENST00000351004.3:c.493C>G	p.Pro165Ala	p.P165A	ENST00000351004	NM_002069.5	165	Cca/Gca	0	
AC083862.1			GRCh37	7	134832805	134832805	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR097																					ENST00000452718.1:c.112T>A	p.Ser38Thr	p.S38T	ENST00000452718		38	Tct/Act	0	
DENND2A	27147		GRCh37	7	140301576	140301576	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000275884.6:c.622G>A	p.Gly208Arg	p.G208R	ENST00000275884		208	Ggg/Agg	0	
KIAA1147	57189		GRCh37	7	141363976	141363976	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR097																					ENST00000536163.1:c.1168G>C	p.Val390Leu	p.V390L	ENST00000536163	NM_001080392.1	390	Gtg/Ctg	0	
LOXL2	4017		GRCh37	8	23167224	23167224	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000389131.3:c.1837C>T	p.Pro613Ser	p.P613S	ENST00000389131	NM_002318.2	613	Ccc/Tcc	0	
DUSP26	78986		GRCh37	8	33451092	33451092	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR097																					ENST00000256261.4:c.395C>G	p.Thr132Arg	p.T132R	ENST00000256261	NM_024025.1	132	aCg/aGg	0	
LRRCC1	85444		GRCh37	8	86021910	86021910	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR097																					ENST00000360375.3:c.185A>T	p.Asp62Val	p.D62V	ENST00000360375	NM_033402.4	62	gAt/gTt	0	
SEMA4D	10507		GRCh37	9	91994412	91994412	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR097																					ENST00000356444.2:c.1796C>G	p.Pro599Arg	p.P599R	ENST00000356444		599	cCc/cGc	0	
ROR2	4920		GRCh37	9	94488954	94488954	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000375708.3:c.1255G>A	p.Ala419Thr	p.A419T	ENST00000375708	NM_004560.3	419	Gct/Act	0	
C5	727		GRCh37	9	123725972	123725972	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR097																					ENST00000223642.1:c.4265C>A	p.Ala1422Glu	p.A1422E	ENST00000223642	NM_001735.2	1422	gCg/gAg	0	
TPRN	286262		GRCh37	9	140093513	140093513	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000409012.4:c.1651G>A	p.Glu551Lys	p.E551K	ENST00000409012	NM_001128228.2	551	Gag/Aag	0	
PARD3	56288		GRCh37	10	34805961	34805961	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000374789.3:c.349C>T	p.Gln117Ter	p.Q117*	ENST00000374789	NM_019619.3	117	Cag/Tag	0	
ZNF248	57209		GRCh37	10	38120545	38120545	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			brca_smc_2018_BR097																					ENST00000357328.4:c.1738T>C	p.Ter580ArgextTer9	p.*580Rext*9	ENST00000357328	NM_001267597.1	580	Tga/Cga	0	
RBP3	5949		GRCh37	10	48389662	48389662	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000224600.4:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000224600	NM_002900.2	406	Gaa/Aaa	0	
PLA2G12B	84647		GRCh37	10	74714320	74714320	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR097																					ENST00000373032.3:c.124A>G	p.Ser42Gly	p.S42G	ENST00000373032	NM_032562.2	42	Agc/Ggc	0	
LRRC27	80313		GRCh37	10	134158070	134158070	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000368613.4:c.469G>A	p.Val157Met	p.V157M	ENST00000368613	NM_001143757.1	157	Gtg/Atg	0	
OTOG	340990		GRCh37	11	17667114	17667114	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR097																					ENST00000399391.2:c.8501A>T	p.Lys2834Met	p.K2834M	ENST00000399391	NM_001277269.1	2834	aAg/aTg	0	
CAPRIN1	4076		GRCh37	11	34110996	34110996	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000341394.4:c.1286C>T	p.Ala429Val	p.A429V	ENST00000341394	NM_005898.4	429	gCg/gTg	0	
CD44	960		GRCh37	11	35198194	35198194	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000428726.2:c.140C>T	p.Thr47Met	p.T47M	ENST00000428726	NM_000610.3	47	aCg/aTg	0	
OR1S2	219958		GRCh37	11	57970735	57970735	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR097																					ENST00000302592.6:c.919A>T	p.Asn307Tyr	p.N307Y	ENST00000302592	NM_001004459.1	307	Aat/Tat	0	
ASRGL1	80150		GRCh37	11	62124581	62124581	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR097																					ENST00000301776.5:c.456G>C	p.Lys152Asn	p.K152N	ENST00000301776	NM_025080.3	152	aaG/aaC	0	
LOH12CR2	503693		GRCh37	12	12509934	12509934	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR097																					ENST00000381800.2:c.67A>G	p.Thr23Ala	p.T23A	ENST00000381800		23	Acc/Gcc	0	
C12orf71	728858		GRCh37	12	27235385	27235385	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR097																					ENST00000429849.2:c.32A>G	p.Glu11Gly	p.E11G	ENST00000429849	NM_001080406.1	11	gAg/gGg	0	
SPRYD3	84926		GRCh37	12	53467144	53467144	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR097																					ENST00000301463.4:c.619G>T	p.Asp207Tyr	p.D207Y	ENST00000301463	NM_032840.2	207	Gac/Tac	0	
PTPN11	5781		GRCh37	12	112888166	112888166	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR097																					ENST00000351677.2:c.182A>G	p.Asp61Gly	p.D61G	ENST00000351677	NM_002834.3	61	gAt/gGt	0	
AACS	65985		GRCh37	12	125619398	125619398	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR097																					ENST00000316519.6:c.1678G>T	p.Val560Leu	p.V560L	ENST00000316519	NM_023928.3	560	Gtg/Ttg	0	
FNDC3A	22862		GRCh37	13	49772337	49772337	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR097																					ENST00000492622.2:c.2710T>A	p.Ser904Thr	p.S904T	ENST00000492622	NM_001079673.1	904	Tcc/Acc	0	
FARP1	10160		GRCh37	13	99045938	99045938	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR097																					ENST00000319562.6:c.1130A>G	p.Gln377Arg	p.Q377R	ENST00000319562	NM_005766.2	377	cAg/cGg	0	
CCDC168	643677		GRCh37	13	103382978	103382978	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR097																					ENST00000322527.2:c.6182T>C	p.Ile2061Thr	p.I2061T	ENST00000322527	NM_001146197.1	2061	aTc/aCc	0	
OR11H7	390441		GRCh37	14	20698479	20698479	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000553765.1:c.919G>A	p.Gly307Arg	p.G307R	ENST00000553765		307	Gga/Aga	0	
KIAA0586	9786		GRCh37	14	59014600	59014600	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000354386.6:c.4841C>T	p.Ser1614Phe	p.S1614F	ENST00000354386	NM_001244189.1	1614	tCt/tTt	0	
SYNE2	23224		GRCh37	14	64655381	64655381	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR097																					ENST00000344113.4:c.17826G>T	p.Gln5942His	p.Q5942H	ENST00000344113	NM_015180.4	5942	caG/caT	0	
SPTB	6710		GRCh37	14	65237627	65237627	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR097																					ENST00000389721.5:c.5774A>G	p.Gln1925Arg	p.Q1925R	ENST00000389721	NM_000347.5	1925	cAg/cGg	0	
CATSPERB	79820		GRCh37	14	92174488	92174488	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000256343.3:c.463C>T	p.Arg155Ter	p.R155*	ENST00000256343	NM_024764.2	155	Cga/Tga	0	
DICER1	23405		GRCh37	14	95560476	95560476	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000343455.3:c.5113G>A	p.Glu1705Lys	p.E1705K	ENST00000343455	NM_177438.2	1705	Gaa/Aaa	0	
GOLGA8UP	100507067		GRCh37	15	31085614	31085614	+	splice_donor_variant,non_coding_transcript_variant	Splice_Site	SNP	G	G	T			brca_smc_2018_BR097																					ENST00000527159.2:n.169+1G>T		p.X57_splice	ENST00000527159		57		0	
GREM1	26585		GRCh37	15	33023123	33023123	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR097																					ENST00000300177.4:c.232C>G	p.Gln78Glu	p.Q78E	ENST00000300177	NM_001191322.1	78	Caa/Gaa	0	
EIF2AK4	440275		GRCh37	15	40326545	40326545	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000263791.5:c.4792G>A	p.Ala1598Thr	p.A1598T	ENST00000263791	NM_001013703.2	1598	Gca/Aca	0	
CILP	8483		GRCh37	15	65489401	65489401	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR097																					ENST00000261883.4:c.3223G>T	p.Gly1075Cys	p.G1075C	ENST00000261883	NM_003613.3	1075	Ggc/Tgc	0	
MAP2K5	5607		GRCh37	15	68099074	68099074	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR097																					ENST00000178640.5:c.1333C>G	p.Gln445Glu	p.Q445E	ENST00000178640	NM_145160.2	445	Cag/Gag	0	
CLN6	54982		GRCh37	15	68504170	68504170	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000249806.5:c.329G>A	p.Arg110His	p.R110H	ENST00000249806	NM_017882.2	110	cGc/cAc	0	
CCDC33	80125		GRCh37	15	74627374	74627374	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR097																					ENST00000398814.3:c.2084A>G	p.Gln695Arg	p.Q695R	ENST00000398814	NM_025055.4	695	cAg/cGg	0	
IQGAP1	8826		GRCh37	15	91027561	91027561	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000268182.5:c.3898G>A	p.Gly1300Ser	p.G1300S	ENST00000268182	NM_003870.3	1300	Ggt/Agt	0	
CCDC154	645811		GRCh37	16	1492412	1492412	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR097																					ENST00000389176.3:c.670A>G	p.Met224Val	p.M224V	ENST00000389176	NM_001143980.1	224	Atg/Gtg	0	
KIAA0556	23247		GRCh37	16	27788304	27788304	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR097																					ENST00000261588.4:c.4505T>C	p.Leu1502Pro	p.L1502P	ENST00000261588	NM_015202.2	1502	cTg/cCg	0	
CES5A	221223		GRCh37	16	55890300	55890300	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000290567.9:c.1114C>T	p.Gln372Ter	p.Q372*	ENST00000290567	NM_001143685.1	372	Caa/Taa	0	
DHX38	9785		GRCh37	16	72137620	72137620	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000268482.3:c.1757G>A	p.Arg586Gln	p.R586Q	ENST00000268482	NM_014003.3	586	cGg/cAg	0	
GSE1	23199		GRCh37	16	85688401	85688401	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR097																					ENST00000253458.7:c.601C>G	p.Leu201Val	p.L201V	ENST00000253458	NM_014615.3	201	Ctc/Gtc	0	
MYO1C	4641		GRCh37	17	1373733	1373733	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000359786.5:c.2362C>T	p.Arg788Trp	p.R788W	ENST00000359786	NM_001080779.1	788	Cgg/Tgg	0	
MYO1C	4641		GRCh37	17	1375228	1375228	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000359786.5:c.1994G>A	p.Arg665His	p.R665H	ENST00000359786	NM_001080779.1	665	cGc/cAc	0	
P2RX1	5023		GRCh37	17	3806911	3806911	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000225538.3:c.539G>A	p.Arg180Gln	p.R180Q	ENST00000225538	NM_002558.3	180	cGa/cAa	0	
TP53	7157		GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR097																					ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag	0	
VAMP2	6844		GRCh37	17	8065637	8065637	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR097																					ENST00000316509.6:c.53G>T	p.Gly18Val	p.G18V	ENST00000316509	NM_014232.2	18	gGt/gTt	0	
DNAH9	1770		GRCh37	17	11532900	11532900	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000262442.4:c.1517C>T	p.Thr506Met	p.T506M	ENST00000262442	NM_001372.3	506	aCg/aTg	0	
DNAH9	1770		GRCh37	17	11687003	11687003	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000262442.4:c.7759G>A	p.Val2587Ile	p.V2587I	ENST00000262442	NM_001372.3	2587	Gta/Ata	0	
NF1	4763		GRCh37	17	29557943	29557943	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000358273.4:c.3197G>A	p.Arg1066Lys	p.R1066K	ENST00000358273	NM_001042492.2	1066	aGa/aAa	0	
WNK4	65266		GRCh37	17	40932879	40932879	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000246914.5:c.163C>T	p.Arg55Cys	p.R55C	ENST00000246914	NM_032387.4	55	Cgc/Tgc	0	
EVPL	2125		GRCh37	17	74004100	74004100	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000301607.3:c.5186C>T	p.Ser1729Leu	p.S1729L	ENST00000301607	NM_001988.2	1729	tCg/tTg	0	
MPPE1	65258		GRCh37	18	11885719	11885719	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR097																					ENST00000588072.1:c.964C>A	p.Pro322Thr	p.P322T	ENST00000588072	NM_023075.5	322	Cca/Aca	0	
MAPK4	5596		GRCh37	18	48256000	48256000	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR097																					ENST00000400384.2:c.1540C>A	p.Pro514Thr	p.P514T	ENST00000400384	NM_002747.3	514	Ccc/Acc	0	
ZBTB7A	51341		GRCh37	19	4054526	4054526	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR097																					ENST00000322357.4:c.705C>A	p.Asp235Glu	p.D235E	ENST00000322357	NM_015898.2	235	gaC/gaA	0	
PRX	57716		GRCh37	19	40902710	40902710	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000324001.7:c.1549C>T	p.Leu517Phe	p.L517F	ENST00000324001	NM_181882.2	517	Ctt/Ttt	0	
KIR2DL3	3804		GRCh37	19	55255377	55255377	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000342376.3:c.505C>T	p.Arg169Cys	p.R169C	ENST00000342376	NM_015868.2	169	Cgt/Tgt	0	
ZNF865	100507290		GRCh37	19	56125250	56125250	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000568956.1:c.266C>T	p.Ala89Val	p.A89V	ENST00000568956	NM_001195605.1	89	gCg/gTg	0	
CSRP2BP			GRCh37	20	18123404	18123404	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR097																					ENST00000435364.3:c.100G>C	p.Gly34Arg	p.G34R	ENST00000435364	NM_020536.4	34	Gga/Cga	0	
GCNT7	140687		GRCh37	20	55071955	55071955	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR097																					ENST00000243913.4:c.344C>A	p.Pro115Gln	p.P115Q	ENST00000243913	NM_080615.1	115	cCa/cAa	0	
MYO18B	84700		GRCh37	22	26270322	26270322	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000536101.1:c.4021G>A	p.Val1341Ile	p.V1341I	ENST00000536101		1341	Gtt/Att	0	
DUSP18	150290		GRCh37	22	31059444	31059444	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR097																					ENST00000334679.3:c.547C>T	p.Arg183Cys	p.R183C	ENST00000334679	NM_152511.3	183	Cgt/Tgt	0	
EIF3D	8664		GRCh37	22	36916653	36916653	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000216190.8:c.548G>A	p.Arg183His	p.R183H	ENST00000216190	NM_003753.3	183	cGc/cAc	0	
XPNPEP3	63929		GRCh37	22	41282380	41282380	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR097																					ENST00000357137.4:c.653A>G	p.Tyr218Cys	p.Y218C	ENST00000357137	NM_022098.3	218	tAt/tGt	0	
TTLL8	164714		GRCh37	22	50470162	50470162	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000433387.1:c.1708G>A	p.Val570Met	p.V570M	ENST00000433387		570	Gtg/Atg	0	
DMD	1756		GRCh37	X	32486658	32486658	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR097																					ENST00000357033.4:c.3119G>T	p.Cys1040Phe	p.C1040F	ENST00000357033	NM_004007.2	1040	tGt/tTt	0	
ARHGAP36	158763		GRCh37	X	130220600	130220600	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR097																					ENST00000276211.5:c.1447C>T	p.Arg483Trp	p.R483W	ENST00000276211	NM_144967.3	483	Cgg/Tgg	0	
PLCL2	23228		GRCh37	3	17052465	17052465	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR060																					ENST00000418129.2:c.1249C>T	p.Leu417Phe	p.L417F	ENST00000418129	NM_001144382.1	417	Ctc/Ttc	0	
AP003733.1			GRCh37	11	61735807	61735807	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR060																					ENST00000601917.1:c.232G>C	p.Gly78Arg	p.G78R	ENST00000601917		78	Ggg/Cgg	0	
UTP20	27340		GRCh37	12	101761681	101761681	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR060																					ENST00000261637.4:c.6311G>A	p.Gly2104Asp	p.G2104D	ENST00000261637	NM_014503.2	2104	gGt/gAt	0	
PIEZO2	63895		GRCh37	18	10794948	10794948	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR060																					ENST00000503781.3:c.1580C>T	p.Ser527Leu	p.S527L	ENST00000503781	NM_022068.2	527	tCg/tTg	0	
ZNF568	374900		GRCh37	19	37487949	37487949	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR060																					ENST00000433993.1:c.960A>T	p.Lys320Asn	p.K320N	ENST00000433993		320	aaA/aaT	0	
PAPPA2	60676		GRCh37	1	176811516	176811516	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR124																					ENST00000367662.3:c.5302G>C	p.Val1768Leu	p.V1768L	ENST00000367662	NM_020318.2	1768	Gtc/Ctc	0	
SLC12A8	84561		GRCh37	3	124811038	124811038	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR124																					ENST00000393469.4:c.1710C>G	p.Phe570Leu	p.F570L	ENST00000393469	NM_001195483.1	570	ttC/ttG	0	
MUC4	4585		GRCh37	3	195511742	195511742	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR124																					ENST00000463781.3:c.6709C>A	p.Gln2237Lys	p.Q2237K	ENST00000463781	NM_018406.6	2237	Cag/Aag	0	
SEC31A	22872		GRCh37	4	83791536	83791536	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			brca_smc_2018_BR124																					ENST00000355196.2:c.824T>A	p.Leu275Ter	p.L275*	ENST00000355196		275	tTg/tAg	0	
POU5F2	134187		GRCh37	5	93076702	93076702	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR124																					ENST00000510627.4:c.568G>A	p.Glu190Lys	p.E190K	ENST00000510627	NM_153216.1	190	Gaa/Aaa	0	
CLINT1	9685		GRCh37	5	157240107	157240107	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR124																					ENST00000411809.2:c.481G>T	p.Gly161Trp	p.G161W	ENST00000411809	NM_014666.3	161	Ggg/Tgg	0	
SLC13A1	6561		GRCh37	7	122774545	122774545	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR124																					ENST00000194130.2:c.851G>A	p.Trp284Ter	p.W284*	ENST00000194130	NM_022444.3	284	tGg/tAg	0	
KIAA1549	57670		GRCh37	7	138529080	138529080	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR124																					ENST00000422774.1:c.5434C>A	p.Pro1812Thr	p.P1812T	ENST00000422774		1812	Cct/Act	0	
MTDH	92140		GRCh37	8	98735171	98735171	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR124																					ENST00000336273.3:c.1586C>T	p.Ser529Phe	p.S529F	ENST00000336273	NM_178812.3	529	tCt/tTt	0	
MATN2	4147		GRCh37	8	99033526	99033526	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR124																					ENST00000254898.5:c.1913T>C	p.Val638Ala	p.V638A	ENST00000254898	NM_002380.3	638	gTt/gCt	0	
COLEC10	10584		GRCh37	8	120118275	120118275	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR124																					ENST00000332843.2:c.679C>G	p.Pro227Ala	p.P227A	ENST00000332843	NM_006438.3	227	Cca/Gca	0	
BAI1			GRCh37	8	143623676	143623676	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR124																					ENST00000323289.5:c.4081G>A	p.Glu1361Lys	p.E1361K	ENST00000323289	NM_001702.2	1361	Gag/Aag	0	
FKBP15	23307		GRCh37	9	115932122	115932122	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR124																					ENST00000238256.3:c.2867C>A	p.Ser956Tyr	p.S956Y	ENST00000238256	NM_015258.1	956	tCc/tAc	0	
CDON	50937		GRCh37	11	125853980	125853980	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR124																					ENST00000392693.3:c.2782G>A	p.Val928Ile	p.V928I	ENST00000392693	NM_001243597.1	928	Gtt/Att	0	
KATNAL1	84056		GRCh37	13	30782679	30782679	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			brca_smc_2018_BR124																					ENST00000380615.3:c.1471T>G	p.Ter491GlyextTer23	p.*491Gext*23	ENST00000380615	NM_032116.4	491	Tga/Gga	0	
IPO5	3843		GRCh37	13	98672008	98672008	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR124																					ENST00000357602.3:c.3010G>A	p.Glu1004Lys	p.E1004K	ENST00000357602		1004	Gaa/Aaa	0	
GPR183	1880		GRCh37	13	99947640	99947640	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR124																					ENST00000376414.4:c.760G>T	p.Val254Phe	p.V254F	ENST00000376414	NM_004951.4	254	Gtt/Ttt	0	
CAMTA2	23125		GRCh37	17	4883017	4883017	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR124																					ENST00000348066.3:c.1600A>T	p.Thr534Ser	p.T534S	ENST00000348066	NM_015099.3	534	Acc/Tcc	0	
MYH1	4619		GRCh37	17	10404626	10404626	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR124																					ENST00000226207.5:c.3539G>T	p.Arg1180Met	p.R1180M	ENST00000226207	NM_005963.3	1180	aGg/aTg	0	
EFCAB3	146779		GRCh37	17	60493442	60493442	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR124																					ENST00000305286.3:c.1069A>T	p.Ile357Phe	p.I357F	ENST00000305286	NM_173503.3	357	Atc/Ttc	0	
ANKRD12	23253		GRCh37	18	9258147	9258147	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR124																					ENST00000262126.4:c.4882G>A	p.Val1628Ile	p.V1628I	ENST00000262126	NM_015208.4	1628	Gtc/Atc	0	
SHD	56961		GRCh37	19	4283068	4283068	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR124																					ENST00000543264.2:c.421G>T	p.Val141Leu	p.V141L	ENST00000543264	NM_020209.3	141	Gtg/Ttg	0	
PMM1	5372		GRCh37	22	41982154	41982154	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR124																					ENST00000216259.7:c.131G>T	p.Ser44Ile	p.S44I	ENST00000216259	NM_002676.2	44	aGt/aTt	0	
IRS4	8471		GRCh37	X	107977559	107977559	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR124																					ENST00000372129.2:c.2016A>C	p.Glu672Asp	p.E672D	ENST00000372129	NM_003604.2	672	gaA/gaC	0	
ARHGEF6	9459		GRCh37	X	135772904	135772904	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR124																					ENST00000250617.6:c.1050T>A	p.Asp350Glu	p.D350E	ENST00000250617	NM_004840.2	350	gaT/gaA	0	
CYFIP2	26999		GRCh37	5	156746800	156746800	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR143																					ENST00000521420.1:c.1309C>T	p.Leu437Phe	p.L437F	ENST00000521420		437	Ctc/Ttc	0	
FSD2	123722		GRCh37	15	83451777	83451777	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR143																					ENST00000334574.8:c.736G>A	p.Glu246Lys	p.E246K	ENST00000334574		246	Gag/Aag	0	
ABCD3	5825		GRCh37	1	94964164	94964164	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR161																					ENST00000370214.4:c.1393T>C	p.Ser465Pro	p.S465P	ENST00000370214	NM_002858.3	465	Tct/Cct	0	
HSD11B1	3290		GRCh37	1	209907757	209907757	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR161																					ENST00000367027.3:c.770A>T	p.Tyr257Phe	p.Y257F	ENST00000367027	NM_005525.3	257	tAt/tTt	0	
PDP1	54704		GRCh37	8	94934973	94934973	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR161																					ENST00000297598.4:c.686A>T	p.Asp229Val	p.D229V	ENST00000297598	NM_018444.3	229	gAt/gTt	0	
GNE	10020		GRCh37	9	36246147	36246147	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR161																					ENST00000377902.5:c.497A>T	p.Gln166Leu	p.Q166L	ENST00000377902	NM_001190383.1	166	cAg/cTg	0	
ANTXRL	195977		GRCh37	10	47678651	47678651	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR161																					ENST00000447511.2:c.979G>T	p.Glu327Ter	p.E327*	ENST00000447511	NM_001278688.1	327	Gaa/Taa	0	
AKT1	207		GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR161																					ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag	0	
GON4L	54856		GRCh37	1	155720490	155720490	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR042																					ENST00000368331.1:c.6611T>G	p.Phe2204Cys	p.F2204C	ENST00000368331	NM_001037533.1	2204	tTc/tGc	0	
ASPM	259266		GRCh37	1	197062294	197062294	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR042																					ENST00000367409.4:c.9182A>G	p.Lys3061Arg	p.K3061R	ENST00000367409	NM_018136.4	3061	aAa/aGa	0	
TRIB2	28951		GRCh37	2	12863600	12863600	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR042																					ENST00000155926.4:c.485C>A	p.Ala162Glu	p.A162E	ENST00000155926	NM_021643.3	162	gCa/gAa	0	
IL1R2	7850		GRCh37	2	102644771	102644771	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR042																					ENST00000332549.3:c.1114C>T	p.Arg372Trp	p.R372W	ENST00000332549	NM_004633.3	372	Cgg/Tgg	0	
FASTKD1	79675		GRCh37	2	170417024	170417024	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR042																					ENST00000453153.2:c.844A>T	p.Ser282Cys	p.S282C	ENST00000453153	NM_024622.4	282	Agt/Tgt	0	
MYH15	22989		GRCh37	3	108117939	108117939	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR042																					ENST00000273353.3:c.4972C>G	p.Leu1658Val	p.L1658V	ENST00000273353	NM_014981.1	1658	Ctt/Gtt	0	
PIK3CA	5290		GRCh37	3	178928067	178928067	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR042																					ENST00000263967.3:c.1345C>A	p.Pro449Thr	p.P449T	ENST00000263967	NM_006218.2	449	Cct/Act	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR042																					ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt	0	
PDZD2	23037		GRCh37	5	32089773	32089773	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR042																					ENST00000438447.1:c.6219A>C	p.Glu2073Asp	p.E2073D	ENST00000438447		2073	gaA/gaC	0	
PCDHB7	56129		GRCh37	5	140553132	140553132	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR042																					ENST00000231137.3:c.716C>A	p.Ala239Asp	p.A239D	ENST00000231137	NM_018940.2	239	gCc/gAc	0	
TFR2	7036		GRCh37	7	100238811	100238811	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR042																					ENST00000223051.3:c.74G>A	p.Arg25His	p.R25H	ENST00000223051	NM_003227.3	25	cGt/cAt	0	
SERPINE1	5054		GRCh37	7	100771945	100771945	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR042																					ENST00000223095.4:c.271G>A	p.Asp91Asn	p.D91N	ENST00000223095	NM_000602.4	91	Gac/Aac	0	
CHRM2	1129		GRCh37	7	136700783	136700783	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR042																					ENST00000320658.5:c.1171G>A	p.Ala391Thr	p.A391T	ENST00000320658	NM_001006632.1	391	Gct/Act	0	
KIAA2026	158358		GRCh37	9	5922738	5922738	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR042																					ENST00000399933.3:c.3258G>C	p.Gln1086His	p.Q1086H	ENST00000399933	NM_001017969.2	1086	caG/caC	0	
LRRC26	389816		GRCh37	9	140064070	140064070	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR042																					ENST00000371542.3:c.326C>T	p.Ser109Leu	p.S109L	ENST00000371542	NM_001013653.2	109	tCg/tTg	0	
ABLIM1	3983		GRCh37	10	116304849	116304849	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR042																					ENST00000277895.5:c.809C>A	p.Ala270Asp	p.A270D	ENST00000277895	NM_002313.5	270	gCt/gAt	0	
OR10W1	81341		GRCh37	11	58035311	58035311	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR042																					ENST00000395079.2:c.20C>T	p.Ala7Val	p.A7V	ENST00000395079	NM_207374.3	7	gCc/gTc	0	
ZNHIT2	741		GRCh37	11	64884369	64884369	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR042																					ENST00000310597.4:c.757G>C	p.Ala253Pro	p.A253P	ENST00000310597	NM_014205.2	253	Gcc/Ccc	0	
CD4	920		GRCh37	12	6923307	6923307	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			brca_smc_2018_BR042																					ENST00000011653.4:c.215-1G>T		p.X72_splice	ENST00000011653	NM_000616.4	72		0	
G2E3	55632		GRCh37	14	31071295	31071295	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			brca_smc_2018_BR042																					ENST00000206595.6:c.968T>A	p.Leu323Ter	p.L323*	ENST00000206595	NM_017769.3	323	tTa/tAa	0	
PLEKHG3	26030		GRCh37	14	65198842	65198842	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR042																					ENST00000394691.1:c.1155G>T	p.Trp385Cys	p.W385C	ENST00000394691		385	tgG/tgT	0	
TP53	7157		GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR042																					ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc	0	
PAK7			GRCh37	20	9546744	9546744	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR042																					ENST00000353224.5:c.1278G>T	p.Arg426Ser	p.R426S	ENST00000353224	NM_177990.2	426	agG/agT	0	
AF165138.7			GRCh37	21	15974346	15974346	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR042																					ENST00000400562.1:c.397C>G	p.Gln133Glu	p.Q133E	ENST00000400562		133	Cag/Gag	0	
MIB2	142678		GRCh37	1	1559214	1559214	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR106																					ENST00000505820.2:c.653G>T	p.Arg218Leu	p.R218L	ENST00000505820		218	cGc/cTc	0	
OBSCN	84033		GRCh37	1	228505276	228505276	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR106																					ENST00000422127.1:c.13673G>A	p.Arg4558His	p.R4558H	ENST00000422127	NM_001098623.2	4558	cGc/cAc	0	
PIK3CA	5290		GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR106																					ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR106																					ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt	0	
SLBP	7884		GRCh37	4	1696524	1696524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR106																					ENST00000489418.1:c.673C>T	p.Gln225Ter	p.Q225*	ENST00000489418	NM_006527.2	225	Cag/Tag	0	
SDK1	221935		GRCh37	7	4245522	4245522	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR106																					ENST00000404826.2:c.5110G>T	p.Ala1704Ser	p.A1704S	ENST00000404826	NM_152744.3	1704	Gcc/Tcc	0	
HEPACAM2	253012		GRCh37	7	92848665	92848665	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR106																					ENST00000394468.2:c.179C>T	p.Pro60Leu	p.P60L	ENST00000394468	NM_001039372.1	60	cCa/cTa	0	
ERBB3	2065		GRCh37	12	56487277	56487277	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR106																					ENST00000267101.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000267101	NM_001982.3	475	Cgg/Tgg	0	
TTBK2	146057		GRCh37	15	43045085	43045085	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR106																					ENST00000267890.6:c.2359G>A	p.Asp787Asn	p.D787N	ENST00000267890	NM_173500.3	787	Gat/Aat	0	
FTCD	10841		GRCh37	21	47565832	47565832	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR106																					ENST00000291670.5:c.998G>A	p.Arg333Gln	p.R333Q	ENST00000291670	NM_006657.2	333	cGa/cAa	0	
MACF1	23499		GRCh37	1	39913464	39913464	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR136																					ENST00000372915.3:c.19559T>A	p.Leu6520Gln	p.L6520Q	ENST00000372915		6520	cTg/cAg	0	
ARID4B	51742		GRCh37	1	235359361	235359361	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR136																					ENST00000264183.3:c.1911T>G	p.His637Gln	p.H637Q	ENST00000264183	NM_016374.5	637	caT/caG	0	
ERBB4	2066		GRCh37	2	212615417	212615417	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR136																					ENST00000342788.4:c.569A>G	p.His190Arg	p.H190R	ENST00000342788	NM_005235.2	190	cAt/cGt	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR136																					ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt	0	
INF2	64423		GRCh37	14	105167806	105167806	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR136																					ENST00000392634.4:c.104C>G	p.Pro35Arg	p.P35R	ENST00000392634	NM_022489.3	35	cCc/cGc	0	
SLTM	79811		GRCh37	15	59175852	59175852	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR136																					ENST00000380516.2:c.2969G>C	p.Gly990Ala	p.G990A	ENST00000380516	NM_001013843.1	990	gGa/gCa	0	
ADAMTS18	170692		GRCh37	16	77396153	77396153	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR136																					ENST00000282849.5:c.1065A>C	p.Leu355Phe	p.L355F	ENST00000282849	NM_199355.2	355	ttA/ttC	0	
AGBL4	84871		GRCh37	1	49056566	49056566	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR154																					ENST00000371839.1:c.1043G>A	p.Arg348Gln	p.R348Q	ENST00000371839	NM_032785.3	348	cGg/cAg	0	
MROH9	80133		GRCh37	1	170961468	170961468	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR154																					ENST00000367758.3:c.1192G>C	p.Ala398Pro	p.A398P	ENST00000367758	NM_025063.2	398	Gcg/Ccg	0	
PIK3CA	5290		GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR154																					ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA	0	
HDAC9	9734		GRCh37	7	18875596	18875596	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR154																					ENST00000432645.2:c.2651A>T	p.Asp884Val	p.D884V	ENST00000432645	NM_058176.2	884	gAt/gTt	0	
OR5M10	390167		GRCh37	11	56345182	56345182	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR154																					ENST00000526812.2:c.16C>A	p.His6Asn	p.H6N	ENST00000526812	NM_001004741.1	6	Cac/Aac	0	
CBFB	865		GRCh37	16	67070596	67070596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR154																					ENST00000290858.6:c.220C>T	p.Gln74Ter	p.Q74*	ENST00000290858	NM_001755.2	74	Cag/Tag	0	
CDH1	999		GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR154																					ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag	0	
SLC12A5	57468		GRCh37	20	44683631	44683631	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR154																					ENST00000454036.2:c.2825T>A	p.Met942Lys	p.M942K	ENST00000454036	NM_001134771.1	942	aTg/aAg	0	
PRKCZ	5590		GRCh37	1	2082251	2082251	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR048																					ENST00000378567.3:c.710G>T	p.Gly237Val	p.G237V	ENST00000378567	NM_002744.4	237	gGg/gTg	0	
CNKSR1	10256		GRCh37	1	26507237	26507237	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR048																					ENST00000374253.5:c.242G>C	p.Ser81Thr	p.S81T	ENST00000374253	NM_006314.2	81	aGc/aCc	0	
YTHDF2	51441		GRCh37	1	29068975	29068975	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR048																					ENST00000373812.3:c.193G>C	p.Gly65Arg	p.G65R	ENST00000373812	NM_016258.2	65	Ggc/Cgc	0	
CSMD2	114784		GRCh37	1	34071062	34071062	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR048																					ENST00000241312.4:c.6358C>G	p.Leu2120Val	p.L2120V	ENST00000241312		2120	Ctt/Gtt	0	
DLGAP3	58512		GRCh37	1	35370555	35370555	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR048																					ENST00000235180.4:c.430G>C	p.Gly144Arg	p.G144R	ENST00000235180	NM_001080418.1	144	Ggg/Cgg	0	
BRDT	676		GRCh37	1	92443849	92443849	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR048																					ENST00000362005.3:c.1094T>C	p.Leu365Pro	p.L365P	ENST00000362005	NM_001242805.1	365	cTt/cCt	0	
TCHH	7062		GRCh37	1	152084860	152084860	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR048																					ENST00000368804.1:c.833T>C	p.Leu278Pro	p.L278P	ENST00000368804	NM_007113.3	278	cTa/cCa	0	
F5	2153		GRCh37	1	169494095	169494095	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR048																					ENST00000367797.3:c.5768T>C	p.Ile1923Thr	p.I1923T	ENST00000367797	NM_000130.4	1923	aTc/aCc	0	
SRGAP2	23380		GRCh37	1	206566157	206566157	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR048																					ENST00000295713.5:c.338G>A	p.Asp114Asn	p.D114N	ENST00000295713		114	Gac/Aac	0	
ARHGEF33	100271715		GRCh37	2	39158320	39158320	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR048																					ENST00000409978.1:c.433A>G	p.Ile145Val	p.I145V	ENST00000409978		145	Atc/Gtc	0	
TTC30B	150737		GRCh37	2	178416432	178416432	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR048																					ENST00000408939.3:c.1060C>T	p.Leu354Phe	p.L354F	ENST00000408939	NM_152517.2	354	Ctc/Ttc	0	
DNAH12	201625		GRCh37	3	57368503	57368503	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR048																					ENST00000351747.2:c.7364G>T	p.Arg2455Ile	p.R2455I	ENST00000351747	NM_178504.4	2455	aGa/aTa	0	
LAMP3	27074		GRCh37	3	182871996	182871996	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR048																					ENST00000265598.3:c.233C>A	p.Ala78Glu	p.A78E	ENST00000265598	NM_014398.3	78	gCg/gAg	0	
MUC4	4585		GRCh37	3	195509423	195509423	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR048																					ENST00000463781.3:c.9028C>A	p.Pro3010Thr	p.P3010T	ENST00000463781	NM_018406.6	3010	Cct/Act	0	
COL23A1	91522		GRCh37	5	177697360	177697360	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR048																					ENST00000390654.3:c.446C>G	p.Pro149Arg	p.P149R	ENST00000390654	NM_173465.3	149	cCc/cGc	0	
C6orf47	57827		GRCh37	6	31627266	31627266	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR048																					ENST00000375911.1:c.459G>T	p.Lys153Asn	p.K153N	ENST00000375911	NM_021184.3	153	aaG/aaT	0	
C6orf163	206412		GRCh37	6	88074730	88074730	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR048																					ENST00000388923.4:c.606G>C	p.Glu202Asp	p.E202D	ENST00000388923	NM_001010868.2	202	gaG/gaC	0	
GPER1	2852		GRCh37	7	1132219	1132219	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR048																					ENST00000297469.3:c.855G>T	p.Gln285His	p.Q285H	ENST00000297469	NM_001505.2	285	caG/caT	0	
PHKG1	5260		GRCh37	7	56151079	56151079	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR048																					ENST00000297373.2:c.439G>C	p.Val147Leu	p.V147L	ENST00000297373	NM_006213.4	147	Gtg/Ctg	0	
DYNC1I1	1780		GRCh37	7	95665030	95665030	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR048																					ENST00000324972.6:c.1381G>A	p.Glu461Lys	p.E461K	ENST00000324972	NM_004411.4	461	Gaa/Aaa	0	
BRAF	673		GRCh37	7	140500253	140500253	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR048																					ENST00000288602.6:c.889C>T	p.His297Tyr	p.H297Y	ENST00000288602	NM_004333.4	297	Cac/Tac	0	
TMEM252	169693		GRCh37	9	71155675	71155675	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR048																					ENST00000377311.3:c.56T>G	p.Leu19Arg	p.L19R	ENST00000377311	NM_153237.1	19	cTg/cGg	0	
GPSM1	26086		GRCh37	9	139233118	139233118	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR048																					ENST00000440944.1:c.925G>A	p.Ala309Thr	p.A309T	ENST00000440944	NM_001145638.2	309	Gcc/Acc	0	
APLNR	187		GRCh37	11	57003597	57003597	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR048																					ENST00000257254.3:c.882C>G	p.Cys294Trp	p.C294W	ENST00000257254		294	tgC/tgG	0	
PLEKHG6	55200		GRCh37	12	6426738	6426738	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR048																					ENST00000011684.7:c.893G>C	p.Gly298Ala	p.G298A	ENST00000011684	NM_018173.3	298	gGg/gCg	0	
UBC	7316		GRCh37	12	125398126	125398126	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR048																					ENST00000339647.5:c.192G>C	p.Glu64Asp	p.E64D	ENST00000339647	NM_021009.5	64	gaG/gaC	0	
ARHGEF40	55701		GRCh37	14	21543812	21543812	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR048																					ENST00000298694.4:c.1627G>T	p.Asp543Tyr	p.D543Y	ENST00000298694	NM_001278529.1	543	Gac/Tac	0	
ACTC1	70		GRCh37	15	35085687	35085687	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			brca_smc_2018_BR048																					ENST00000290378.4:c.213T>A	p.Tyr71Ter	p.Y71*	ENST00000290378	NM_005159.4	71	taT/taA	0	
CACNA1H	8912		GRCh37	16	1251733	1251733	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR048																					ENST00000348261.5:c.1283G>A	p.Arg428Gln	p.R428Q	ENST00000348261	NM_021098.2	428	cGg/cAg	0	
IRX3	79191		GRCh37	16	54319249	54319249	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR048																					ENST00000329734.3:c.544C>A	p.Arg182Ser	p.R182S	ENST00000329734	NM_024336.2	182	Cgc/Agc	0	
TP53	7157		GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR048																					ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc	0	
DBF4B	80174		GRCh37	17	42828014	42828014	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR048																					ENST00000315005.3:c.1241G>A	p.Gly414Asp	p.G414D	ENST00000315005	NM_145663.2	414	gGt/gAt	0	
TIMP2	7077		GRCh37	17	76867043	76867043	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR048																					ENST00000262768.7:c.277C>T	p.Pro93Ser	p.P93S	ENST00000262768	NM_003255.4	93	Ccc/Tcc	0	
ANKRD27	84079		GRCh37	19	33098737	33098737	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR048																					ENST00000306065.4:c.2177G>A	p.Arg726Lys	p.R726K	ENST00000306065	NM_032139.2	726	aGg/aAg	0	
CACNA1I	8911		GRCh37	22	40045529	40045529	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR048																					ENST00000402142.3:c.1591C>G	p.Leu531Val	p.L531V	ENST00000402142	NM_021096.3	531	Ctg/Gtg	0	
ZCCHC12	170261		GRCh37	X	117960077	117960077	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR048																					ENST00000310164.2:c.870G>T	p.Trp290Cys	p.W290C	ENST00000310164	NM_173798.2	290	tgG/tgT	0	
DCAF12L2	340578		GRCh37	X	125299095	125299095	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR048																					ENST00000360028.2:c.813C>A	p.Ser271Arg	p.S271R	ENST00000360028		271	agC/agA	0	
ATP8B2	57198		GRCh37	1	154309912	154309912	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR167																					ENST00000368489.3:c.1025A>G	p.Tyr342Cys	p.Y342C	ENST00000368489	NM_020452.3	342	tAc/tGc	0	
STAC	6769		GRCh37	3	36545899	36545899	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR167																					ENST00000273183.3:c.781G>A	p.Glu261Lys	p.E261K	ENST00000273183	NM_003149.1	261	Gaa/Aaa	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR167																					ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt	0	
C4orf21			GRCh37	4	113509081	113509081	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR167																					ENST00000505019.1:c.3132G>A	p.Met1044Ile	p.M1044I	ENST00000505019	NM_018392.4	1044	atG/atA	0	
SH3RF1	57630		GRCh37	4	170028091	170028091	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR167																					ENST00000284637.9:c.2405T>C	p.Leu802Pro	p.L802P	ENST00000284637	NM_020870.3	802	cTg/cCg	0	
CHST7	56548		GRCh37	X	46433865	46433865	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR167																					ENST00000276055.3:c.499G>A	p.Val167Met	p.V167M	ENST00000276055	NM_019886.2	167	Gtg/Atg	0	
SLC35F3	148641		GRCh37	1	234367372	234367372	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR128																					ENST00000366617.3:c.286G>A	p.Ala96Thr	p.A96T	ENST00000366617		96	Gcg/Acg	0	
BIRC6	57448		GRCh37	2	32693673	32693673	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR128																					ENST00000421745.2:c.5949A>C	p.Gln1983His	p.Q1983H	ENST00000421745	NM_016252.3	1983	caA/caC	0	
PIK3CA	5290		GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR128																					ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt	0	
SH3RF1	57630		GRCh37	4	170190275	170190275	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR128																					ENST00000284637.9:c.89A>G	p.His30Arg	p.H30R	ENST00000284637	NM_020870.3	30	cAt/cGt	0	
CTD-2203A3.1			GRCh37	5	51376665	51376665	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR128																					ENST00000510583.1:c.221C>T	p.Ser74Leu	p.S74L	ENST00000510583		74	tCa/tTa	0	
BAG6	7917		GRCh37	6	31611682	31611682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR128																					ENST00000375964.6:c.1651C>T	p.Gln551Ter	p.Q551*	ENST00000375964	NM_004639.3	551	Cag/Tag	0	
SASH1	23328		GRCh37	6	148840889	148840889	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR128																					ENST00000367467.3:c.1069G>T	p.Gly357Ter	p.G357*	ENST00000367467	NM_015278.3	357	Gga/Tga	0	
TP53	7157		GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR128																					ENST00000269305.4:c.326T>C	p.Phe109Ser	p.F109S	ENST00000269305	NM_001126112.2	109	tTc/tCc	0	
TTLL6	284076		GRCh37	17	46865361	46865361	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR128																					ENST00000393382.3:c.1401G>T	p.Arg467Ser	p.R467S	ENST00000393382	NM_001130918.1	467	agG/agT	0	
CIC	23152		GRCh37	19	42793198	42793198	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR128																					ENST00000575354.2:c.1090G>A	p.Asp364Asn	p.D364N	ENST00000575354	NM_015125.3	364	Gac/Aac	0	
MEGF8	1954		GRCh37	19	42859967	42859967	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR128																					ENST00000251268.6:c.4202C>T	p.Ser1401Leu	p.S1401L	ENST00000251268		1401	tCg/tTg	0	
OPHN1	4983		GRCh37	X	67283822	67283822	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR128																					ENST00000355520.5:c.2032C>T	p.Gln678Ter	p.Q678*	ENST00000355520	NM_002547.2	678	Cag/Tag	0	
POGK	57645		GRCh37	1	166819431	166819431	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR084																					ENST00000367875.1:c.1615G>A	p.Ala539Thr	p.A539T	ENST00000367875		539	Gct/Act	0	
FOSL2	2355		GRCh37	2	28627151	28627151	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR084																					ENST00000264716.4:c.280C>A	p.His94Asn	p.H94N	ENST00000264716	NM_005253.3	94	Cac/Aac	0	
FOSL2	2355		GRCh37	2	28627152	28627152	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR084																					ENST00000264716.4:c.281A>C	p.His94Pro	p.H94P	ENST00000264716	NM_005253.3	94	cAc/cCc	0	
PLB1	151056		GRCh37	2	28805352	28805352	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BR084																					ENST00000327757.5:c.1713C>G	p.Tyr571Ter	p.Y571*	ENST00000327757	NM_153021.4	571	taC/taG	0	
GPATCH11	253635		GRCh37	2	37323371	37323371	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR084																					ENST00000608836.1:c.745A>C	p.Asn249His	p.N249H	ENST00000608836		249	Aat/Cat	0	
TRIP12	9320		GRCh37	2	230723973	230723973	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR084																					ENST00000283943.5:c.416G>T	p.Gly139Val	p.G139V	ENST00000283943	NM_004238.1	139	gGg/gTg	0	
TRIP12	9320		GRCh37	2	230724177	230724177	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR084																					ENST00000283943.5:c.212G>C	p.Gly71Ala	p.G71A	ENST00000283943	NM_004238.1	71	gGa/gCa	0	
RTP3	83597		GRCh37	3	46539642	46539642	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR084																					ENST00000296142.3:c.90C>A	p.Asp30Glu	p.D30E	ENST00000296142	NM_031440.1	30	gaC/gaA	0	
DZIP3	9666		GRCh37	3	108407467	108407467	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR084																					ENST00000361582.3:c.3298A>C	p.Asn1100His	p.N1100H	ENST00000361582	NM_014648.3	1100	Aat/Cat	0	
MORC1	27136		GRCh37	3	108773718	108773718	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR084																					ENST00000232603.5:c.1187G>C	p.Gly396Ala	p.G396A	ENST00000232603	NM_014429.3	396	gGc/gCc	0	
PDIA4	9601		GRCh37	7	148709267	148709267	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR084																					ENST00000286091.4:c.800A>G	p.Asn267Ser	p.N267S	ENST00000286091	NM_004911.4	267	aAc/aGc	0	
NPAS4	266743		GRCh37	11	66192307	66192307	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR084																					ENST00000311034.2:c.1946C>T	p.Pro649Leu	p.P649L	ENST00000311034	NM_178864.3	649	cCc/cTc	0	
FGF3	2248		GRCh37	11	69625357	69625357	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR084																					ENST00000334134.2:c.436C>A	p.Gln146Lys	p.Q146K	ENST00000334134	NM_005247.2	146	Cag/Aag	0	
NTM	50863		GRCh37	11	132016376	132016376	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR084																					ENST00000374786.1:c.368C>A	p.Pro123Gln	p.P123Q	ENST00000374786	NM_001144058.1	123	cCa/cAa	0	
DNAJC22	79962		GRCh37	12	49743454	49743454	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR084																					ENST00000395069.3:c.799G>A	p.Val267Ile	p.V267I	ENST00000395069	NM_024902.2	267	Gtt/Att	0	
SMARCD1	6602		GRCh37	12	50492528	50492528	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR084																					ENST00000394963.4:c.1424A>G	p.Glu475Gly	p.E475G	ENST00000394963	NM_003076.4	475	gAg/gGg	0	
GPR133			GRCh37	12	131623760	131623760	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR084																					ENST00000261654.5:c.2577G>C	p.Trp859Cys	p.W859C	ENST00000261654	NM_198827.3	859	tgG/tgC	0	
MGA	23269		GRCh37	15	42041084	42041084	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR084																					ENST00000219905.7:c.5462A>G	p.Asn1821Ser	p.N1821S	ENST00000219905	NM_001164273.1	1821	aAt/aGt	0	
SORD	6652		GRCh37	15	45315521	45315521	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR084																					ENST00000267814.9:c.40G>T	p.Val14Leu	p.V14L	ENST00000267814	NM_003104.5	14	Gtg/Ttg	0	
HSF4	3299		GRCh37	16	67198739	67198739	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR084																					ENST00000264009.8:c.25C>A	p.Pro9Thr	p.P9T	ENST00000264009	NM_001040667.2	9	Ccc/Acc	0	
PPM1D	8493		GRCh37	17	58740407	58740407	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR084																					ENST00000305921.3:c.1312G>T	p.Ala438Ser	p.A438S	ENST00000305921	NM_003620.3	438	Gcc/Tcc	0	
LILRB2	10288		GRCh37	19	54781452	54781452	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR084																					ENST00000391749.4:c.1312G>A	p.Gly438Ser	p.G438S	ENST00000391749	NM_001278406.1	438	Ggc/Agc	0	
AP001631.10			GRCh37	21	44581280	44581280	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR084																					ENST00000433840.1:c.83G>T	p.Gly28Val	p.G28V	ENST00000433840		28	gGg/gTg	0	
PODN	127435		GRCh37	1	53547861	53547861	+	splice_donor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BR080																					ENST00000312553.5:c.*27+1G>A		p.X9_splice	ENST00000312553	NM_001199081.1	9		0	
TTN	7273		GRCh37	2	179417151	179417151	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR080																					ENST00000591111.1:c.85553C>T	p.Pro28518Leu	p.P28518L	ENST00000591111		28518	cCc/cTc	0	
NDUFA10	4705		GRCh37	2	240900543	240900543	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR080																					ENST00000252711.2:c.1060C>G	p.Leu354Val	p.L354V	ENST00000252711	NM_004544.3	354	Ctg/Gtg	0	
SEMA5A	9037		GRCh37	5	9154758	9154758	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR080																					ENST00000382496.5:c.1323C>A	p.Ser441Arg	p.S441R	ENST00000382496	NM_003966.2	441	agC/agA	0	
CDH9	1007		GRCh37	5	26906906	26906906	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR080																					ENST00000231021.4:c.565G>A	p.Ala189Thr	p.A189T	ENST00000231021	NM_016279.3	189	Gcc/Acc	0	
RGS7BP	401190		GRCh37	5	63803629	63803629	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR080																					ENST00000334025.2:c.257C>A	p.Ala86Glu	p.A86E	ENST00000334025	NM_001029875.2	86	gCg/gAg	0	
ADAMTS6	11174		GRCh37	5	64587275	64587275	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR080																					ENST00000381055.3:c.1393G>T	p.Asp465Tyr	p.D465Y	ENST00000381055	NM_197941.2	465	Gat/Tat	0	
PPP1R3G	648791		GRCh37	6	5086572	5086572	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR080																					ENST00000405617.2:c.853G>A	p.Glu285Lys	p.E285K	ENST00000405617	NM_001145115.1	285	Gag/Aag	0	
PKHD1	5314		GRCh37	6	51513950	51513950	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR080																					ENST00000371117.3:c.11243A>G	p.Gln3748Arg	p.Q3748R	ENST00000371117	NM_138694.3	3748	cAg/cGg	0	
BRAF	673		GRCh37	7	140494263	140494263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR080																					ENST00000288602.6:c.985C>T	p.Gln329Ter	p.Q329*	ENST00000288602	NM_004333.4	329	Caa/Taa	0	
TAS2R60	338398		GRCh37	7	143140849	143140849	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR080																					ENST00000332690.1:c.304T>G	p.Phe102Val	p.F102V	ENST00000332690	NM_177437.1	102	Ttc/Gtc	0	
NRG1	3084		GRCh37	8	32617902	32617902	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR080																					ENST00000405005.3:c.1246C>T	p.Arg416Ter	p.R416*	ENST00000405005		416	Cga/Tga	0	
ASTN2	23245		GRCh37	9	119568073	119568073	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR080																					ENST00000313400.4:c.2234C>G	p.Pro745Arg	p.P745R	ENST00000313400		745	cCt/cGt	0	
MYO3A	53904		GRCh37	10	26457687	26457687	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR080																					ENST00000265944.5:c.3158A>T	p.Lys1053Met	p.K1053M	ENST00000265944	NM_017433.4	1053	aAg/aTg	0	
DNTT	1791		GRCh37	10	98078284	98078284	+	splice_donor_variant	Splice_Site	SNP	G	G	T			brca_smc_2018_BR080																					ENST00000371174.2:c.378+1G>T		p.X126_splice	ENST00000371174		126		0	
DMBT1	1755		GRCh37	10	124377734	124377734	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR080																					ENST00000338354.3:c.4706G>T	p.Gly1569Val	p.G1569V	ENST00000338354		1569	gGa/gTa	0	
LRRC56	115399		GRCh37	11	551926	551926	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR080																					ENST00000270115.7:c.997A>G	p.Asn333Asp	p.N333D	ENST00000270115	NM_198075.3	333	Aac/Gac	0	
MUC5B	727897		GRCh37	11	1267651	1267651	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR080																					ENST00000529681.1:c.9541G>A	p.Ala3181Thr	p.A3181T	ENST00000529681	NM_002458.2	3181	Gcc/Acc	0	
PIK3C2A	5286		GRCh37	11	17140244	17140244	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR080																					ENST00000265970.7:c.2983T>A	p.Phe995Ile	p.F995I	ENST00000265970	NM_002645.2	995	Ttc/Atc	0	
INTS5	80789		GRCh37	11	62416444	62416444	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR080																					ENST00000330574.2:c.1108A>C	p.Ser370Arg	p.S370R	ENST00000330574	NM_030628.1	370	Agc/Cgc	0	
C11orf80	79703		GRCh37	11	66589228	66589228	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR080																					ENST00000360962.4:c.1451C>T	p.Ala484Val	p.A484V	ENST00000360962	NM_024650.3	484	gCt/gTt	0	
FARP1	10160		GRCh37	13	99037070	99037070	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR080																					ENST00000319562.6:c.583A>C	p.Lys195Gln	p.K195Q	ENST00000319562	NM_005766.2	195	Aaa/Caa	0	
GSTZ1	2954		GRCh37	14	77795527	77795527	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR080																					ENST00000216465.5:c.404T>C	p.Ile135Thr	p.I135T	ENST00000216465	NM_145870.2	135	aTc/aCc	0	
RYR3	6263		GRCh37	15	34113779	34113779	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR080																					ENST00000389232.4:c.10971C>G	p.Asn3657Lys	p.N3657K	ENST00000389232	NM_001036.3	3657	aaC/aaG	0	
MESP1	55897		GRCh37	15	90293963	90293963	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR080																					ENST00000300057.4:c.500C>A	p.Pro167His	p.P167H	ENST00000300057	NM_018670.3	167	cCc/cAc	0	
SLX4	84464		GRCh37	16	3639843	3639843	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR080																					ENST00000294008.3:c.3796A>C	p.Ser1266Arg	p.S1266R	ENST00000294008	NM_032444.2	1266	Agc/Cgc	0	
SOGA2			GRCh37	18	8784267	8784267	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR080																					ENST00000306329.11:c.2237A>G	p.Asp746Gly	p.D746G	ENST00000306329		746	gAt/gGt	0	
TDRD12	91646		GRCh37	19	33233724	33233724	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR080																					ENST00000444215.2:c.358T>A	p.Tyr120Asn	p.Y120N	ENST00000444215		120	Tat/Aat	0	
PRR12	57479		GRCh37	19	50101070	50101070	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR080																					ENST00000418929.2:c.3478A>G	p.Thr1160Ala	p.T1160A	ENST00000418929	NM_020719.1	1160	Acg/Gcg	0	
BRWD1	54014		GRCh37	21	40568777	40568777	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BR080																					ENST00000333229.2:c.6218C>G	p.Ser2073Ter	p.S2073*	ENST00000333229	NM_018963.4	2073	tCa/tGa	0	
NHS	4810		GRCh37	X	17745700	17745700	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR080																					ENST00000380060.3:c.3411C>A	p.Asn1137Lys	p.N1137K	ENST00000380060	NM_198270.2	1137	aaC/aaA	0	
PTCHD1	139411		GRCh37	X	23353126	23353126	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR080																					ENST00000379361.4:c.134G>C	p.Arg45Pro	p.R45P	ENST00000379361	NM_173495.2	45	cGc/cCc	0	
HUWE1	10075		GRCh37	X	53569424	53569424	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR080																					ENST00000262854.6:c.11456C>A	p.Ala3819Asp	p.A3819D	ENST00000262854	NM_031407.5	3819	gCt/gAt	0	
CDX4	1046		GRCh37	X	72667406	72667406	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR080																					ENST00000373514.2:c.317C>T	p.Ala106Val	p.A106V	ENST00000373514	NM_005193.1	106	gCc/gTc	0	
TIMM8A	1678		GRCh37	X	100603624	100603624	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR080																					ENST00000372902.3:c.29C>T	p.Ala10Val	p.A10V	ENST00000372902	NM_004085.3	10	gCg/gTg	0	
TMEM164	84187		GRCh37	X	109247130	109247130	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR080																					ENST00000372068.2:c.128T>C	p.Val43Ala	p.V43A	ENST00000372068	NM_032227.3	43	gTg/gCg	0	
SLC25A43	203427		GRCh37	X	118544168	118544168	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR080																					ENST00000217909.7:c.533C>G	p.Ser178Cys	p.S178C	ENST00000217909	NM_145305.2	178	tCt/tGt	0	
KIAA0232	9778		GRCh37	4	6858945	6858945	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR081																					ENST00000307659.5:c.424C>T	p.Gln142Ter	p.Q142*	ENST00000307659	NM_014743.2	142	Cag/Tag	0	
MSX2	4488		GRCh37	5	174156476	174156476	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR081																					ENST00000239243.6:c.694G>T	p.Ala232Ser	p.A232S	ENST00000239243	NM_002449.4	232	Gca/Tca	0	
PCMTD1	115294		GRCh37	8	52733164	52733164	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR081																					ENST00000360540.5:c.821C>G	p.Pro274Arg	p.P274R	ENST00000360540	NM_052937.3	274	cCc/cGc	0	
WNK2	65268		GRCh37	9	95997113	95997113	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR081																					ENST00000297954.4:c.1099G>A	p.Glu367Lys	p.E367K	ENST00000297954	NM_001282394.1	367	Gag/Aag	0	
ANKLE2	23141		GRCh37	12	133331518	133331518	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR081																					ENST00000357997.5:c.383C>A	p.Thr128Lys	p.T128K	ENST00000357997	NM_015114.1	128	aCa/aAa	0	
TP53	7157		GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			brca_smc_2018_BR081																					ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261		0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR052																					ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt	0	
ATOH1	474		GRCh37	4	94750624	94750624	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR052																					ENST00000306011.3:c.547C>T	p.Arg183Cys	p.R183C	ENST00000306011	NM_005172.1	183	Cgc/Tgc	0	
SUPT3H	8464		GRCh37	6	44900410	44900410	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR052																					ENST00000371460.1:c.925G>A	p.Gly309Ser	p.G309S	ENST00000371460	NM_181356.2	309	Ggc/Agc	0	
C7orf63			GRCh37	7	89906386	89906386	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BR052																					ENST00000389297.4:c.985-1G>C		p.X329_splice	ENST00000389297	NM_001039706.2	329		0	
VCPIP1	80124		GRCh37	8	67547417	67547417	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR052																					ENST00000310421.4:c.2988A>T	p.Glu996Asp	p.E996D	ENST00000310421	NM_025054.4	996	gaA/gaT	0	
WDR11	55717		GRCh37	10	122622349	122622349	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR052																					ENST00000263461.6:c.629C>G	p.Pro210Arg	p.P210R	ENST00000263461	NM_018117.11	210	cCa/cGa	0	
MYH7	4625		GRCh37	14	23890202	23890202	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR052																					ENST00000355349.3:c.3301G>A	p.Gly1101Ser	p.G1101S	ENST00000355349	NM_000257.2	1101	Ggc/Agc	0	
ZNF329	79673		GRCh37	19	58639604	58639604	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR052																					ENST00000358067.4:c.1267G>A	p.Gly423Ser	p.G423S	ENST00000358067		423	Ggc/Agc	0	
MTMR11	10903		GRCh37	1	149905511	149905511	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR176																					ENST00000439741.2:c.852G>C	p.Glu284Asp	p.E284D	ENST00000439741	NM_001145862.1	284	gaG/gaC	0	
NR5A2	2494		GRCh37	1	200017309	200017309	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR176																					ENST00000367362.3:c.473C>A	p.Ala158Asp	p.A158D	ENST00000367362	NM_205860.2	158	gCc/gAc	0	
OR14I1	401994		GRCh37	1	248845227	248845227	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR176																					ENST00000342623.3:c.379C>A	p.Pro127Thr	p.P127T	ENST00000342623	NM_001004734.1	127	Ccc/Acc	0	
ETAA1	54465		GRCh37	2	67631542	67631542	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR176																					ENST00000272342.5:c.1728C>G	p.Phe576Leu	p.F576L	ENST00000272342	NM_019002.3	576	ttC/ttG	0	
MUC4	4585		GRCh37	3	195513515	195513515	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR176																					ENST00000463781.3:c.4936G>A	p.Ala1646Thr	p.A1646T	ENST00000463781	NM_018406.6	1646	Gcc/Acc	0	
PRDM9	56979		GRCh37	5	23521274	23521274	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BR176																					ENST00000296682.3:c.494C>G	p.Ser165Ter	p.S165*	ENST00000296682	NM_020227.2	165	tCa/tGa	0	
NPR3	4883		GRCh37	5	32712162	32712162	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR176																					ENST00000265074.8:c.280C>G	p.Pro94Ala	p.P94A	ENST00000265074	NM_001204375.1	94	Ccg/Gcg	0	
NAPEPLD	222236		GRCh37	7	102755548	102755548	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR176																					ENST00000341533.4:c.1015T>A	p.Ser339Thr	p.S339T	ENST00000341533	NM_198990.4	339	Tct/Act	0	
SLC26A3	1811		GRCh37	7	107408301	107408301	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR176																					ENST00000340010.5:c.2115A>C	p.Lys705Asn	p.K705N	ENST00000340010	NM_000111.2	705	aaA/aaC	0	
SLC26A3	1811		GRCh37	7	107416932	107416932	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR176																					ENST00000340010.5:c.1642A>G	p.Asn548Asp	p.N548D	ENST00000340010	NM_000111.2	548	Aac/Gac	0	
TACC1	6867		GRCh37	8	38699930	38699930	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR176																					ENST00000317827.4:c.2086G>A	p.Glu696Lys	p.E696K	ENST00000317827	NM_006283.2	696	Gag/Aag	0	
RGS3	5998		GRCh37	9	116345910	116345910	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR176																					ENST00000350696.5:c.2218C>A	p.Pro740Thr	p.P740T	ENST00000350696		740	Cca/Aca	0	
C1QL3	389941		GRCh37	10	16556699	16556699	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR176																					ENST00000298943.3:c.596C>A	p.Ala199Asp	p.A199D	ENST00000298943	NM_001010908.1	199	gCt/gAt	0	
CUL2	8453		GRCh37	10	35351962	35351962	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR176																					ENST00000374748.1:c.148C>T	p.Pro50Ser	p.P50S	ENST00000374748		50	Cct/Tct	0	
AIFM2	84883		GRCh37	10	71880280	71880280	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR176																					ENST00000307864.1:c.490G>A	p.Glu164Lys	p.E164K	ENST00000307864	NM_032797.5	164	Gaa/Aaa	0	
PTPRE	5791		GRCh37	10	129866472	129866472	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR176																					ENST00000254667.3:c.929C>A	p.Pro310His	p.P310H	ENST00000254667	NM_006504.4	310	cCc/cAc	0	
OR51I1	390063		GRCh37	11	5462107	5462107	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BR176																					ENST00000380211.1:c.638C>G	p.Ser213Ter	p.S213*	ENST00000380211	NM_001005288.2	213	tCa/tGa	0	
NELL1	4745		GRCh37	11	20959356	20959356	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR176																					ENST00000357134.5:c.1022T>G	p.Val341Gly	p.V341G	ENST00000357134	NM_201551.1	341	gTt/gGt	0	
CCDC73	493860		GRCh37	11	32657244	32657244	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR176																					ENST00000335185.5:c.1183C>A	p.Gln395Lys	p.Q395K	ENST00000335185	NM_001008391.3	395	Cag/Aag	0	
PC	5091		GRCh37	11	66616702	66616702	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR176																					ENST00000393955.2:c.3287A>T	p.Lys1096Met	p.K1096M	ENST00000393955	NM_022172.2	1096	aAg/aTg	0	
GPRC5D	55507		GRCh37	12	13102883	13102883	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR176																					ENST00000228887.1:c.436G>C	p.Glu146Gln	p.E146Q	ENST00000228887	NM_018654.1	146	Gag/Cag	0	
AGAP2	116986		GRCh37	12	58124600	58124600	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR176																					ENST00000547588.1:c.2282G>A	p.Ser761Asn	p.S761N	ENST00000547588	NM_001122772.2	761	aGc/aAc	0	
MEDAG	84935		GRCh37	13	31498477	31498477	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR176																					ENST00000380482.4:c.817C>G	p.Leu273Val	p.L273V	ENST00000380482	NM_032849.3	273	Ctg/Gtg	0	
THAP10	56906		GRCh37	15	71175207	71175207	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR176																					ENST00000249861.4:c.470C>G	p.Ala157Gly	p.A157G	ENST00000249861	NM_020147.3	157	gCt/gGt	0	
TSC2	7249		GRCh37	16	2137921	2137921	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR176																					ENST00000219476.3:c.5047G>T	p.Val1683Leu	p.V1683L	ENST00000219476	NM_000548.3	1683	Gtg/Ttg	0	
TP53	7157		GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR176																					ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg	0	
ERBB2	2064		GRCh37	17	37882031	37882031	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR176																					ENST00000269571.5:c.2797G>T	p.Asp933Tyr	p.D933Y	ENST00000269571		933	Gac/Tac	0	
ACLY	47		GRCh37	17	40024072	40024072	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR176																					ENST00000352035.2:c.3297G>C	p.Met1099Ile	p.M1099I	ENST00000352035	NM_001096.2	1099	atG/atC	0	
ABCA6	23460		GRCh37	17	67084328	67084328	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR176																					ENST00000284425.2:c.3678G>T	p.Met1226Ile	p.M1226I	ENST00000284425	NM_080284.2	1226	atG/atT	0	
HKR1	284459		GRCh37	19	37838151	37838151	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR176																					ENST00000324411.4:c.150G>C	p.Leu50Phe	p.L50F	ENST00000324411	NM_181786.2	50	ttG/ttC	0	
CRNKL1	51340		GRCh37	20	20018137	20018137	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR176																					ENST00000377340.2:c.2209G>C	p.Glu737Gln	p.E737Q	ENST00000377340	NM_016652.5	737	Gaa/Caa	0	
CTNNBL1	56259		GRCh37	20	36361359	36361359	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR176																					ENST00000361383.6:c.109G>C	p.Glu37Gln	p.E37Q	ENST00000361383	NM_030877.4	37	Gaa/Caa	0	
CHD6	84181		GRCh37	20	40033492	40033492	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR176																					ENST00000373233.3:c.7889C>T	p.Pro2630Leu	p.P2630L	ENST00000373233	NM_032221.4	2630	cCt/cTt	0	
RRP1B	23076		GRCh37	21	45107454	45107454	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR176																					ENST00000340648.4:c.1199G>T	p.Arg400Ile	p.R400I	ENST00000340648	NM_015056.2	400	aGa/aTa	0	
CLTCL1	8218		GRCh37	22	19223359	19223359	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR176																					ENST00000427926.1:c.829A>G	p.Thr277Ala	p.T277A	ENST00000427926		277	Aca/Gca	0	
BRWD3	254065		GRCh37	X	79932719	79932719	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR176																					ENST00000373275.4:c.4798C>G	p.His1600Asp	p.H1600D	ENST00000373275	NM_153252.4	1600	Cat/Gat	0	
ZNF75D	7626		GRCh37	X	134427946	134427946	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR176																					ENST00000370766.3:c.121G>T	p.Glu41Ter	p.E41*	ENST00000370766	NM_007131.3	41	Gag/Tag	0	
OBSCN	84033		GRCh37	1	228554164	228554164	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR105																					ENST00000422127.1:c.19240C>G	p.Leu6414Val	p.L6414V	ENST00000422127	NM_001098623.2	6414	Ctg/Gtg	0	
PLEKHH2	130271		GRCh37	2	43973081	43973081	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR105																					ENST00000282406.4:c.3632T>C	p.Val1211Ala	p.V1211A	ENST00000282406	NM_172069.3	1211	gTt/gCt	0	
RANBP2	5903		GRCh37	2	109400302	109400302	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR105																					ENST00000283195.6:c.9620C>G	p.Ser3207Cys	p.S3207C	ENST00000283195	NM_006267.4	3207	tCt/tGt	0	
FAM124B	79843		GRCh37	2	225244609	225244609	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR105																					ENST00000409685.3:c.1049G>C	p.Arg350Pro	p.R350P	ENST00000409685	NM_001122779.1	350	cGg/cCg	0	
CMYA5	202333		GRCh37	5	79030244	79030244	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR105																					ENST00000446378.2:c.5656T>G	p.Phe1886Val	p.F1886V	ENST00000446378	NM_153610.3	1886	Ttt/Gtt	0	
MALSU1	115416		GRCh37	7	23348983	23348983	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR105																					ENST00000466681.1:c.526G>T	p.Val176Leu	p.V176L	ENST00000466681	NM_138446.1	176	Gtg/Ttg	0	
SUN3	256979		GRCh37	7	48046804	48046804	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR105																					ENST00000297325.4:c.450G>C	p.Trp150Cys	p.W150C	ENST00000297325	NM_001030019.1	150	tgG/tgC	0	
UBR5	51366		GRCh37	8	103354859	103354859	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR105																					ENST00000520539.1:c.940G>A	p.Val314Ile	p.V314I	ENST00000520539	NM_015902.5	314	Gtt/Att	0	
ANK3	288		GRCh37	10	61829270	61829270	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR105																					ENST00000280772.2:c.11369A>G	p.Asn3790Ser	p.N3790S	ENST00000280772	NM_020987.3	3790	aAc/aGc	0	
CDH23	64072		GRCh37	10	73464834	73464834	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR105																					ENST00000224721.6:c.2915C>T	p.Ala972Val	p.A972V	ENST00000224721	NM_022124.5	972	gCc/gTc	0	
PTPN5	84867		GRCh37	11	18754244	18754244	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR105																					ENST00000358540.2:c.1224C>G	p.Cys408Trp	p.C408W	ENST00000358540	NM_006906.1	408	tgC/tgG	0	
MPEG1	219972		GRCh37	11	58979357	58979357	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR105																					ENST00000361050.3:c.982A>G	p.Lys328Glu	p.K328E	ENST00000361050	NM_001039396.1	328	Aag/Gag	0	
PMEL	6490		GRCh37	12	56349644	56349644	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR105																					ENST00000548493.1:c.1475G>T	p.Gly492Val	p.G492V	ENST00000548493		492	gGt/gTt	0	
C14orf119	55017		GRCh37	14	23566870	23566870	+	start_lost	Translation_Start_Site	SNP	G	G	A			brca_smc_2018_BR105																					ENST00000319074.4:c.3G>A	p.Met1?	p.M1?	ENST00000319074	NM_017924.3	1	atG/atA	0	
IGHGP	3505		GRCh37	14	106131047	106131047	+	splice_acceptor_variant,non_coding_transcript_variant	Splice_Site	SNP	C	C	A			brca_smc_2018_BR105																					ENST00000390555.3:n.1102-1G>T		p.X368_splice	ENST00000390555		368		0	
FOXB1	27023		GRCh37	15	60297785	60297785	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR105																					ENST00000396057.4:c.623G>T	p.Gly208Val	p.G208V	ENST00000396057	NM_012182.2	208	gGc/gTc	0	
IRX6	79190		GRCh37	16	55363026	55363026	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR105																					ENST00000290552.7:c.1136G>A	p.Arg379His	p.R379H	ENST00000290552	NM_024335.2	379	cGt/cAt	0	
RAP1GAP2	23108		GRCh37	17	2901641	2901641	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR105																					ENST00000254695.8:c.1171A>T	p.Thr391Ser	p.T391S	ENST00000254695	NM_015085.4	391	Acc/Tcc	0	
EFCAB5	374786		GRCh37	17	28382904	28382904	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			brca_smc_2018_BR105																					ENST00000394835.3:c.2195-2A>T		p.X732_splice	ENST00000394835	NM_198529.3	732		0	
FZD2	2535		GRCh37	17	42635419	42635419	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR105																					ENST00000315323.3:c.363C>G	p.Cys121Trp	p.C121W	ENST00000315323	NM_001466.3	121	tgC/tgG	0	
LPO	4025		GRCh37	17	56329776	56329776	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR105																					ENST00000262290.4:c.1014C>A	p.Asp338Glu	p.D338E	ENST00000262290	NM_006151.2	338	gaC/gaA	0	
SLC16A3	9123		GRCh37	17	80196746	80196746	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR105																					ENST00000392339.1:c.1292A>C	p.Lys431Thr	p.K431T	ENST00000392339	NM_001042423.2	431	aAg/aCg	0	
CTD-2224J9.8			GRCh37	19	54006921	54006921	+	non_coding_transcript_exon_variant	RNA	SNP	G	G	T			brca_smc_2018_BR105																					ENST00000509280.1:n.276G>T		p.*92*	ENST00000509280				0	
TMEM74B	55321		GRCh37	20	1161913	1161913	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR105																					ENST00000381894.3:c.350G>T	p.Arg117Leu	p.R117L	ENST00000381894	NM_018354.1	117	cGc/cTc	0	
FAM217B	63939		GRCh37	20	58519198	58519198	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR105																					ENST00000358293.3:c.200G>A	p.Cys67Tyr	p.C67Y	ENST00000358293	NM_001190826.1	67	tGt/tAt	0	
MIIP	60672		GRCh37	1	12082276	12082276	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR121																					ENST00000235332.4:c.239G>C	p.Cys80Ser	p.C80S	ENST00000235332	NM_021933.3	80	tGt/tCt	0	
OPRD1	4985		GRCh37	1	29189619	29189619	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR121																					ENST00000234961.2:c.943C>G	p.Pro315Ala	p.P315A	ENST00000234961	NM_000911.3	315	Ccc/Gcc	0	
NES	10763		GRCh37	1	156639294	156639294	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR121																					ENST00000368223.3:c.4686A>C	p.Glu1562Asp	p.E1562D	ENST00000368223	NM_006617.1	1562	gaA/gaC	0	
IGSF8	93185		GRCh37	1	160062953	160062953	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR121																					ENST00000314485.7:c.1073T>G	p.Leu358Arg	p.L358R	ENST00000314485	NM_052868.4	358	cTg/cGg	0	
RASAL2	9462		GRCh37	1	178435215	178435215	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR121																					ENST00000462775.1:c.3125A>C	p.Gln1042Pro	p.Q1042P	ENST00000462775	NM_004841.3	1042	cAg/cCg	0	
KIDINS220	57498		GRCh37	2	8871709	8871709	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BR121																					ENST00000256707.3:c.4457C>G	p.Ser1486Ter	p.S1486*	ENST00000256707	NM_020738.2	1486	tCa/tGa	0	
SRSF7	6432		GRCh37	2	38977216	38977216	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR121																					ENST00000313117.6:c.149C>G	p.Ala50Gly	p.A50G	ENST00000313117	NM_001195446.1	50	gCc/gGc	0	
FAM161A	84140		GRCh37	2	62067095	62067095	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			brca_smc_2018_BR121																					ENST00000405894.3:c.1044T>G	p.Tyr348Ter	p.Y348*	ENST00000405894	NM_032180.2	348	taT/taG	0	
AFF3	3899		GRCh37	2	100171184	100171184	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR121																					ENST00000409236.2:c.3296A>C	p.Lys1099Thr	p.K1099T	ENST00000409236		1099	aAa/aCa	0	
INHBB	3625		GRCh37	2	121107257	121107257	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR121																					ENST00000295228.3:c.1031C>G	p.Pro344Arg	p.P344R	ENST00000295228	NM_002193.2	344	cCc/cGc	0	
CIR1	9541		GRCh37	2	175260340	175260340	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR121																					ENST00000342016.3:c.11C>T	p.Ser4Phe	p.S4F	ENST00000342016	NM_004882.3	4	tCc/tTc	0	
STK36	27148		GRCh37	2	219556873	219556873	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR121																					ENST00000295709.3:c.1772C>T	p.Thr591Ile	p.T591I	ENST00000295709	NM_015690.4	591	aCt/aTt	0	
ZNF852	285346		GRCh37	3	44541818	44541818	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR121																					ENST00000436261.1:c.451G>A	p.Gly151Arg	p.G151R	ENST00000436261	NM_001287349.1	151	Gga/Aga	0	
APEH	327		GRCh37	3	49716353	49716353	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR121																					ENST00000296456.5:c.1129G>C	p.Val377Leu	p.V377L	ENST00000296456	NM_001640.3	377	Gtc/Ctc	0	
KBTBD8	84541		GRCh37	3	67054132	67054132	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR121																					ENST00000417314.2:c.741T>A	p.Asp247Glu	p.D247E	ENST00000417314		247	gaT/gaA	0	
FNIP2	57600		GRCh37	4	159780799	159780799	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR121																					ENST00000264433.6:c.1129G>T	p.Glu377Ter	p.E377*	ENST00000264433	NM_020840.1	377	Gaa/Taa	0	
RAB3C	115827		GRCh37	5	57913682	57913682	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR121																					ENST00000282878.4:c.237C>G	p.Ile79Met	p.I79M	ENST00000282878	NM_138453.2	79	atC/atG	0	
SLC22A23	63027		GRCh37	6	3298377	3298377	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR121																					ENST00000406686.3:c.1158C>A	p.Phe386Leu	p.F386L	ENST00000406686	NM_015482.1	386	ttC/ttA	0	
TFAP2B	7021		GRCh37	6	50791198	50791198	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR121																					ENST00000393655.3:c.160G>A	p.Ala54Thr	p.A54T	ENST00000393655	NM_003221.3	54	Gcc/Acc	0	
SLC22A3	6581		GRCh37	6	160769752	160769752	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR121																					ENST00000275300.2:c.301A>G	p.Ser101Gly	p.S101G	ENST00000275300	NM_021977.3	101	Agc/Ggc	0	
C6orf118	168090		GRCh37	6	165711511	165711511	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR121																					ENST00000230301.8:c.1016G>C	p.Arg339Thr	p.R339T	ENST00000230301	NM_144980.3	339	aGg/aCg	0	
MAD1L1	8379		GRCh37	7	2054184	2054184	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR121																					ENST00000265854.7:c.1312G>A	p.Ala438Thr	p.A438T	ENST00000265854		438	Gct/Act	0	
BRAF	673		GRCh37	7	140481471	140481471	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR121																					ENST00000288602.6:c.1337C>T	p.Ser446Leu	p.S446L	ENST00000288602	NM_004333.4	446	tCg/tTg	0	
WWP1	11059		GRCh37	8	87410829	87410829	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR121																					ENST00000265428.4:c.501A>C	p.Leu167Phe	p.L167F	ENST00000265428		167	ttA/ttC	0	
GLDC	2731		GRCh37	9	6587205	6587205	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR121																					ENST00000321612.6:c.1786C>G	p.Arg596Gly	p.R596G	ENST00000321612	NM_000170.2	596	Cga/Gga	0	
FAM214B	80256		GRCh37	9	35108147	35108147	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR121																					ENST00000322813.5:c.125C>T	p.Ala42Val	p.A42V	ENST00000322813	NM_025182.2	42	gCg/gTg	0	
FBP2	8789		GRCh37	9	97355879	97355879	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR121																					ENST00000375337.3:c.130G>A	p.Ala44Thr	p.A44T	ENST00000375337	NM_003837.2	44	Gcc/Acc	0	
NCBP1	4686		GRCh37	9	100429124	100429124	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR121																					ENST00000375147.3:c.1981G>C	p.Glu661Gln	p.E661Q	ENST00000375147	NM_002486.4	661	Gaa/Caa	0	
GOLGA2	2801		GRCh37	9	131022971	131022971	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR121																					ENST00000421699.2:c.1450C>G	p.Gln484Glu	p.Q484E	ENST00000421699	NM_004486.4	484	Caa/Gaa	0	
USP20	10868		GRCh37	9	132631656	132631656	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR121																					ENST00000315480.4:c.1344C>G	p.Ile448Met	p.I448M	ENST00000315480		448	atC/atG	0	
DBH	1621		GRCh37	9	136501791	136501791	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR121																					ENST00000393056.2:c.298C>A	p.Leu100Ile	p.L100I	ENST00000393056	NM_000787.3	100	Ctc/Atc	0	
MTPAP	55149		GRCh37	10	30605092	30605092	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR121																					ENST00000263063.4:c.1267C>T	p.Arg423Cys	p.R423C	ENST00000263063	NM_018109.3	423	Cgt/Tgt	0	
RBMXL2	27288		GRCh37	11	7111120	7111120	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR121																					ENST00000306904.5:c.769T>C	p.Tyr257His	p.Y257H	ENST00000306904	NM_014469.4	257	Tac/Cac	0	
DKK3	27122		GRCh37	11	11986204	11986204	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR121																					ENST00000326932.4:c.860C>G	p.Thr287Ser	p.T287S	ENST00000326932	NM_013253.4	287	aCc/aGc	0	
TNKS1BP1	85456		GRCh37	11	57080810	57080810	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR121																					ENST00000358252.3:c.1352C>T	p.Pro451Leu	p.P451L	ENST00000358252	NM_033396.2	451	cCc/cTc	0	
BTBD18	643376		GRCh37	11	57512547	57512547	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR121																					ENST00000422652.1:c.1198C>T	p.Gln400Ter	p.Q400*	ENST00000422652	NM_001145101.1	400	Cag/Tag	0	
OR2AT4	341152		GRCh37	11	74800718	74800718	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR121																					ENST00000305159.3:c.41C>T	p.Pro14Leu	p.P14L	ENST00000305159	NM_001005285.1	14	cCc/cTc	0	
UVRAG	7405		GRCh37	11	75827033	75827033	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR121																					ENST00000356136.3:c.1371C>G	p.Phe457Leu	p.F457L	ENST00000356136	NM_003369.3	457	ttC/ttG	0	
YAP1	10413		GRCh37	11	102056764	102056764	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR121																					ENST00000282441.5:c.704G>C	p.Gly235Ala	p.G235A	ENST00000282441	NM_001130145.2	235	gGa/gCa	0	
TEAD4	7004		GRCh37	12	3131142	3131142	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR121																					ENST00000359864.2:c.856G>T	p.Glu286Ter	p.E286*	ENST00000359864	NM_003213.3	286	Gaa/Taa	0	
C2CD5	9847		GRCh37	12	22627825	22627825	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR121																					ENST00000333957.4:c.1903G>T	p.Glu635Ter	p.E635*	ENST00000333957	NM_014802.1	635	Gag/Tag	0	
SOX5	6660		GRCh37	12	24048776	24048776	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR121																					ENST00000451604.2:c.221C>T	p.Thr74Met	p.T74M	ENST00000451604		74	aCg/aTg	0	
BIN2	51411		GRCh37	12	51685799	51685799	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR121																					ENST00000267012.4:c.1091G>C	p.Ser364Thr	p.S364T	ENST00000267012	NM_016293.2	364	aGc/aCc	0	
PHLDA1	22822		GRCh37	12	76425066	76425066	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR121																					ENST00000266671.5:c.456G>T	p.Lys152Asn	p.K152N	ENST00000266671		152	aaG/aaT	0	
WSB2	55884		GRCh37	12	118472161	118472161	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR121																					ENST00000315436.3:c.1055C>A	p.Thr352Lys	p.T352K	ENST00000315436	NM_018639.4	352	aCa/aAa	0	
TMEM132C	92293		GRCh37	12	129189956	129189956	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR121																					ENST00000435159.2:c.2443G>A	p.Asp815Asn	p.D815N	ENST00000435159	NM_001136103.2	815	Gat/Aat	0	
RPGRIP1	57096		GRCh37	14	21762916	21762916	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR121																					ENST00000400017.2:c.166G>C	p.Asp56His	p.D56H	ENST00000400017	NM_020366.3	56	Gat/Cat	0	
LRFN5	145581		GRCh37	14	42356184	42356184	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR121																					ENST00000298119.4:c.356T>G	p.Phe119Cys	p.F119C	ENST00000298119	NM_152447.3	119	tTc/tGc	0	
LRFN5	145581		GRCh37	14	42356185	42356185	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR121																					ENST00000298119.4:c.357C>G	p.Phe119Leu	p.F119L	ENST00000298119	NM_152447.3	119	ttC/ttG	0	
SPTBN5	51332		GRCh37	15	42166569	42166569	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR121																					ENST00000320955.6:c.4610C>T	p.Ala1537Val	p.A1537V	ENST00000320955	NM_016642.3	1537	gCc/gTc	0	
KBTBD13	390594		GRCh37	15	65369454	65369454	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR121																					ENST00000432196.2:c.301C>G	p.Leu101Val	p.L101V	ENST00000432196	NM_001101362.2	101	Ctc/Gtc	0	
PKD1L2	114780		GRCh37	16	81155218	81155218	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR121																					ENST00000525539.1:c.6584C>A	p.Ser2195Tyr	p.S2195Y	ENST00000525539	NM_052892.3	2195	tCt/tAt	0	
KCNG4	93107		GRCh37	16	84270758	84270758	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR121																					ENST00000308251.4:c.334T>A	p.Phe112Ile	p.F112I	ENST00000308251	NM_172347.2	112	Ttc/Atc	0	
SNAI3	333929		GRCh37	16	88748124	88748124	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			brca_smc_2018_BR121																					ENST00000332281.5:c.77-2A>G		p.X26_splice	ENST00000332281	NM_178310.3	26		0	
CAMKK1	84254		GRCh37	17	3788978	3788978	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR121																					ENST00000348335.2:c.4G>T	p.Glu2Ter	p.E2*	ENST00000348335	NM_032294.2	2	Gag/Tag	0	
RUNDC1	146923		GRCh37	17	41143698	41143698	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR121																					ENST00000361677.1:c.1807G>A	p.Val603Met	p.V603M	ENST00000361677	NM_173079.2	603	Gtg/Atg	0	
C18orf63	644041		GRCh37	18	72021348	72021348	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR121																					ENST00000579455.1:c.1846C>G	p.Gln616Glu	p.Q616E	ENST00000579455	NM_001174123.1	616	Caa/Gaa	0	
SAFB	6294		GRCh37	19	5657268	5657268	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR121																					ENST00000292123.5:c.1772A>C	p.Asp591Ala	p.D591A	ENST00000292123	NM_002967.3	591	gAt/gCt	0	
ABHD8	79575		GRCh37	19	17412421	17412421	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR121																					ENST00000247706.3:c.5T>A	p.Leu2Gln	p.L2Q	ENST00000247706	NM_024527.4	2	cTg/cAg	0	
ZNF14	7561		GRCh37	19	19823835	19823835	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR121																					ENST00000344099.3:c.255C>A	p.Ser85Arg	p.S85R	ENST00000344099	NM_021030.2	85	agC/agA	0	
PDCD5	9141		GRCh37	19	33072177	33072177	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR121																					ENST00000590247.2:c.10G>A	p.Glu4Lys	p.E4K	ENST00000590247	NM_004708.3	4	Gag/Aag	0	
BCAM	4059		GRCh37	19	45322439	45322439	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR121																					ENST00000270233.6:c.1463T>G	p.Leu488Trp	p.L488W	ENST00000270233	NM_005581.4	488	tTg/tGg	0	
CSTF1	1477		GRCh37	20	54970699	54970699	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR121																					ENST00000217109.4:c.91G>A	p.Ala31Thr	p.A31T	ENST00000217109	NM_001324.2	31	Gcc/Acc	0	
MAGEE1	57692		GRCh37	X	75650001	75650001	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR121																					ENST00000361470.2:c.1678C>A	p.Leu560Met	p.L560M	ENST00000361470	NM_020932.2	560	Ctg/Atg	0	
ATRX	546		GRCh37	X	76812995	76812995	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR121																					ENST00000373344.5:c.6626C>A	p.Thr2209Asn	p.T2209N	ENST00000373344	NM_000489.3	2209	aCt/aAt	0	
F9	2158		GRCh37	X	138644169	138644169	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR121																					ENST00000218099.2:c.1325G>A	p.Gly442Glu	p.G442E	ENST00000218099	NM_000133.3	442	gGa/gAa	0	
PCNXL2			GRCh37	1	233160948	233160948	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR077																					ENST00000258229.9:c.4549G>A	p.Ala1517Thr	p.A1517T	ENST00000258229	NM_014801.3	1517	Gcc/Acc	0	
DPYSL5	56896		GRCh37	2	27156145	27156145	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR077																					ENST00000288699.6:c.734T>C	p.Leu245Pro	p.L245P	ENST00000288699	NM_001253724.1	245	cTg/cCg	0	
RFC1	5981		GRCh37	4	39301905	39301905	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR077																					ENST00000381897.1:c.2668A>G	p.Ile890Val	p.I890V	ENST00000381897	NM_002913.4	890	Ata/Gta	0	
FHL5	9457		GRCh37	6	97053834	97053834	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR077																					ENST00000326771.2:c.391G>C	p.Glu131Gln	p.E131Q	ENST00000326771	NM_020482.4	131	Gag/Cag	0	
KIF11	3832		GRCh37	10	94399658	94399658	+	splice_donor_variant	Splice_Site	SNP	G	G	T			brca_smc_2018_BR077																					ENST00000260731.3:c.2267+1G>T		p.X756_splice	ENST00000260731	NM_004523.3	756		0	
PNLIP	5406		GRCh37	10	118314780	118314780	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR077																					ENST00000369221.2:c.662C>T	p.Thr221Met	p.T221M	ENST00000369221	NM_000936.2	221	aCg/aTg	0	
SYT10	341359		GRCh37	12	33579200	33579200	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR077																					ENST00000228567.3:c.382G>A	p.Glu128Lys	p.E128K	ENST00000228567	NM_198992.3	128	Gag/Aag	0	
KLHL33	123103		GRCh37	14	20898377	20898377	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR077																					ENST00000344581.4:c.458C>T	p.Ser153Leu	p.S153L	ENST00000344581	NM_001109997.2	153	tCa/tTa	0	
MOAP1	64112		GRCh37	14	93649622	93649622	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR077																					ENST00000298894.4:c.966C>G	p.Phe322Leu	p.F322L	ENST00000298894	NM_022151.4	322	ttC/ttG	0	
THUMPD1	55623		GRCh37	16	20750350	20750350	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR077																					ENST00000381337.2:c.275A>G	p.Asp92Gly	p.D92G	ENST00000381337	NM_017736.3	92	gAt/gGt	0	
NAE1	8883		GRCh37	16	66844298	66844298	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR077																					ENST00000290810.3:c.1129G>T	p.Glu377Ter	p.E377*	ENST00000290810		377	Gag/Tag	0	
PSMD7	5713		GRCh37	16	74334012	74334012	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BR077																					ENST00000219313.4:c.75-1G>C		p.X25_splice	ENST00000219313	NM_002811.4	25		0	
SPIRE1	56907		GRCh37	18	12512531	12512531	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BR077																					ENST00000409402.4:c.730-1G>C		p.X244_splice	ENST00000409402	NM_001128626.1	244		0	
UBR4	23352		GRCh37	1	19524299	19524299	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR108																					ENST00000375254.3:c.758C>G	p.Ser253Trp	p.S253W	ENST00000375254	NM_020765.2	253	tCg/tGg	0	
MTFR1L	56181		GRCh37	1	26156048	26156048	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR108																					ENST00000374300.3:c.500T>C	p.Val167Ala	p.V167A	ENST00000374300	NM_001099626.1	167	gTc/gCc	0	
KIAA1522	57648		GRCh37	1	33237073	33237073	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR108																					ENST00000373480.1:c.2116C>G	p.Gln706Glu	p.Q706E	ENST00000373480	NM_001198972.1	706	Caa/Gaa	0	
MACF1	23499		GRCh37	1	39888445	39888445	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR108																					ENST00000372915.3:c.16037G>C	p.Cys5346Ser	p.C5346S	ENST00000372915		5346	tGt/tCt	0	
PPT1	5538		GRCh37	1	40557058	40557058	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR108																					ENST00000433473.3:c.376C>A	p.Gln126Lys	p.Q126K	ENST00000433473	NM_000310.3	126	Cag/Aag	0	
SCMH1	22955		GRCh37	1	41499700	41499700	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR108																					ENST00000326197.7:c.1669G>C	p.Glu557Gln	p.E557Q	ENST00000326197		557	Gaa/Caa	0	
TRMT13	54482		GRCh37	1	100598737	100598737	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR108																					ENST00000370141.2:c.13G>C	p.Ala5Pro	p.A5P	ENST00000370141	NM_019083.2	5	Gcg/Ccg	0	
KCNN3	3782		GRCh37	1	154744727	154744727	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR108																					ENST00000271915.4:c.1172C>G	p.Ala391Gly	p.A391G	ENST00000271915	NM_001204087.1	391	gCc/gGc	0	
NOS1AP	9722		GRCh37	1	162337172	162337172	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR108																					ENST00000361897.5:c.1436G>T	p.Trp479Leu	p.W479L	ENST00000361897	NM_014697.2	479	tGg/tTg	0	
NOS1AP	9722		GRCh37	1	162337173	162337173	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR108																					ENST00000361897.5:c.1437G>T	p.Trp479Cys	p.W479C	ENST00000361897	NM_014697.2	479	tgG/tgT	0	
PRDX6	9588		GRCh37	1	173455393	173455393	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BR108																					ENST00000340385.5:c.400-1G>A		p.X134_splice	ENST00000340385	NM_004905.2	134		0	
SLC30A10	55532		GRCh37	1	220101454	220101454	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR108																					ENST00000366926.3:c.329T>C	p.Ile110Thr	p.I110T	ENST00000366926	NM_018713.2	110	aTc/aCc	0	
APOB	338		GRCh37	2	21228078	21228078	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR108																					ENST00000233242.1:c.11662G>T	p.Glu3888Ter	p.E3888*	ENST00000233242	NM_000384.2	3888	Gag/Tag	0	
YIPF4	84272		GRCh37	2	32515610	32515610	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR108																					ENST00000238831.4:c.138C>G	p.Ile46Met	p.I46M	ENST00000238831	NM_032312.3	46	atC/atG	0	
BIRC6	57448		GRCh37	2	32582420	32582420	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR108																					ENST00000421745.2:c.191A>C	p.His64Pro	p.H64P	ENST00000421745	NM_016252.3	64	cAc/cCc	0	
NAB1	4664		GRCh37	2	191524243	191524243	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR108																					ENST00000337386.5:c.341A>T	p.Tyr114Phe	p.Y114F	ENST00000337386	NM_005966.3	114	tAt/tTt	0	
GNB4	59345		GRCh37	3	179123189	179123189	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR108																					ENST00000232564.3:c.705C>A	p.Phe235Leu	p.F235L	ENST00000232564	NM_021629.3	235	ttC/ttA	0	
PRKG2	5593		GRCh37	4	82126159	82126159	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR108																					ENST00000264399.1:c.43G>T	p.Asp15Tyr	p.D15Y	ENST00000264399	NM_006259.1	15	Gat/Tat	0	
LRIT3	345193		GRCh37	4	110790987	110790987	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR108																					ENST00000594814.1:c.1082C>G	p.Thr361Ser	p.T361S	ENST00000594814	NM_198506.4	361	aCt/aGt	0	
C5orf42			GRCh37	5	37169261	37169261	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR108																					ENST00000425232.2:c.6865T>C	p.Tyr2289His	p.Y2289H	ENST00000425232	NM_023073.3	2289	Tat/Cat	0	
MAN1A1	4121		GRCh37	6	119526039	119526039	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR108																					ENST00000368468.3:c.1001G>T	p.Gly334Val	p.G334V	ENST00000368468	NM_005907.3	334	gGa/gTa	0	
GCK	2645		GRCh37	7	44198685	44198685	+	intron_variant	Intron	SNP	G	G	T			brca_smc_2018_BR108																					ENST00000403799.3:c.46-5623C>A		p.*16*	ENST00000403799	NM_000162.3			0	
LAMB1	3912		GRCh37	7	107621194	107621194	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR108																					ENST00000222399.6:c.739C>A	p.Leu247Ile	p.L247I	ENST00000222399	NM_002291.2	247	Ctt/Att	0	
DCAF13	25879		GRCh37	8	104427430	104427430	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR108																					ENST00000297579.5:c.212C>G	p.Ser71Trp	p.S71W	ENST00000297579	NM_015420.6	71	tCg/tGg	0	
LINGO2	158038		GRCh37	9	27949387	27949387	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR108																					ENST00000308675.3:c.1283T>G	p.Val428Gly	p.V428G	ENST00000308675		428	gTc/gGc	0	
OR13C3	138803		GRCh37	9	107298455	107298455	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR108																					ENST00000374781.2:c.640G>C	p.Val214Leu	p.V214L	ENST00000374781	NM_001001961.1	214	Gtc/Ctc	0	
RC3H2	54542		GRCh37	9	125642270	125642270	+	splice_donor_variant	Splice_Site	SNP	A	A	G			brca_smc_2018_BR108																					ENST00000357244.2:c.1093+2T>C		p.X365_splice	ENST00000357244	NM_001100588.1	365		0	
GLT6D1	360203		GRCh37	9	138516008	138516008	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR108																					ENST00000371763.1:c.766A>T	p.Asn256Tyr	p.N256Y	ENST00000371763	NM_182974.2	256	Aat/Tat	0	
ANK3	288		GRCh37	10	61832601	61832601	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR108																					ENST00000280772.2:c.8038C>T	p.Gln2680Ter	p.Q2680*	ENST00000280772	NM_020987.3	2680	Caa/Taa	0	
SIDT2	51092		GRCh37	11	117058148	117058148	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR108																					ENST00000324225.4:c.1070A>C	p.Tyr357Ser	p.Y357S	ENST00000324225	NM_001040455.1	357	tAc/tCc	0	
NANOG	79923		GRCh37	12	7947398	7947398	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR108																					ENST00000229307.4:c.625C>T	p.Gln209Ter	p.Q209*	ENST00000229307	NM_024865.2	209	Cag/Tag	0	
KIAA1551			GRCh37	12	32140199	32140199	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR108																					ENST00000312561.4:c.5029G>C	p.Asp1677His	p.D1677H	ENST00000312561	NM_018169.3	1677	Gac/Cac	0	
SRGAP1	57522		GRCh37	12	64437322	64437322	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR108																					ENST00000355086.3:c.768G>C	p.Lys256Asn	p.K256N	ENST00000355086	NM_020762.2	256	aaG/aaC	0	
CDK17	5128		GRCh37	12	96694082	96694082	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR108																					ENST00000261211.3:c.600G>C	p.Glu200Asp	p.E200D	ENST00000261211	NM_002595.4	200	gaG/gaC	0	
FAM155A	728215		GRCh37	13	108518502	108518502	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR108																					ENST00000375915.2:c.443G>A	p.Gly148Asp	p.G148D	ENST00000375915	NM_001080396.2	148	gGc/gAc	0	
MAP4K5	11183		GRCh37	14	50910656	50910656	+	splice_donor_variant	Splice_Site	SNP	C	C	A			brca_smc_2018_BR108																					ENST00000013125.4:c.1437+1G>T		p.X479_splice	ENST00000013125	NM_198794.2	479		0	
PLD4	122618		GRCh37	14	105398130	105398130	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR108																					ENST00000392593.4:c.964G>T	p.Glu322Ter	p.E322*	ENST00000392593	NM_138790.2	322	Gag/Tag	0	
DNAH3	55567		GRCh37	16	20944721	20944721	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR108																					ENST00000261383.3:c.12106G>A	p.Glu4036Lys	p.E4036K	ENST00000261383	NM_017539.1	4036	Gaa/Aaa	0	
ABCC12	94160		GRCh37	16	48174619	48174619	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR108																					ENST00000311303.3:c.636G>T	p.Leu212Phe	p.L212F	ENST00000311303	NM_033226.2	212	ttG/ttT	0	
CALB2	794		GRCh37	16	71418275	71418275	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR108																					ENST00000302628.4:c.567A>C	p.Lys189Asn	p.K189N	ENST00000302628	NM_001740.4	189	aaA/aaC	0	
TP53	7157		GRCh37	17	7577555	7577555	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR108																					ENST00000269305.4:c.726C>G	p.Cys242Trp	p.C242W	ENST00000269305	NM_001126112.2	242	tgC/tgG	0	
FBXW10	10517		GRCh37	17	18675935	18675935	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR108																					ENST00000395665.4:c.2217G>T	p.Glu739Asp	p.E739D	ENST00000395665		739	gaG/gaT	0	
CDC27	996		GRCh37	17	45198377	45198377	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR108																					ENST00000066544.3:c.2399C>T	p.Thr800Ile	p.T800I	ENST00000066544	NM_001256.3	800	aCa/aTa	0	
SPAG9	9043		GRCh37	17	49098530	49098530	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR108																					ENST00000262013.7:c.980A>G	p.Asn327Ser	p.N327S	ENST00000262013	NM_001130528.2	327	aAt/aGt	0	
SDK2	54549		GRCh37	17	71468352	71468352	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR108																					ENST00000392650.3:c.230T>C	p.Met77Thr	p.M77T	ENST00000392650	NM_001144952.1	77	aTg/aCg	0	
MUC16	94025		GRCh37	19	9059659	9059659	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR108																					ENST00000397910.4:c.27787A>T	p.Thr9263Ser	p.T9263S	ENST00000397910	NM_024690.2	9263	Aca/Tca	0	
SMARCA4	6597		GRCh37	19	11129654	11129654	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BR108																					ENST00000344626.4:c.2460C>G	p.Tyr820Ter	p.Y820*	ENST00000344626	NM_003072.3	820	taC/taG	0	
UNC13A	23025		GRCh37	19	17735670	17735670	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR108																					ENST00000519716.2:c.4165A>T	p.Thr1389Ser	p.T1389S	ENST00000519716	NM_001080421.2	1389	Acc/Tcc	0	
CSTL1	128817		GRCh37	20	23424601	23424601	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR108																					ENST00000246020.2:c.250G>C	p.Val84Leu	p.V84L	ENST00000246020		84	Gtg/Ctg	0	
TEF	7008		GRCh37	22	41763547	41763547	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR108																					ENST00000406644.3:c.11C>G	p.Pro4Arg	p.P4R	ENST00000406644	NM_001145398.2	4	cCt/cGt	0	
JADE3	9767		GRCh37	X	46884290	46884290	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR108																					ENST00000218343.4:c.449A>G	p.Glu150Gly	p.E150G	ENST00000218343	NM_014735.3	150	gAa/gGa	0	
MTOR	2475		GRCh37	1	11188177	11188177	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR094																					ENST00000361445.4:c.5917A>T	p.Ile1973Phe	p.I1973F	ENST00000361445	NM_004958.3	1973	Atc/Ttc	0	
DLGAP3	58512		GRCh37	1	35333167	35333167	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR094																					ENST00000235180.4:c.2547G>C	p.Gln849His	p.Q849H	ENST00000235180	NM_001080418.1	849	caG/caC	0	
MTF1	4520		GRCh37	1	38280927	38280927	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR094																					ENST00000373036.4:c.2143A>C	p.Met715Leu	p.M715L	ENST00000373036	NM_005955.2	715	Atg/Ctg	0	
WDR65			GRCh37	1	43719825	43719825	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR094																					ENST00000372492.4:c.3716C>T	p.Ser1239Phe	p.S1239F	ENST00000372492	NM_001195831.2	1239	tCc/tTc	0	
GBP2	2634		GRCh37	1	89578298	89578298	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR094																					ENST00000370466.3:c.1219G>C	p.Ala407Pro	p.A407P	ENST00000370466	NM_004120.4	407	Gct/Cct	0	
MCL1	4170		GRCh37	1	150551969	150551969	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR094																					ENST00000369026.2:c.38A>C	p.Asn13Thr	p.N13T	ENST00000369026	NM_021960.4	13	aAc/aCc	0	
FLG	2312		GRCh37	1	152277070	152277070	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR094																					ENST00000368799.1:c.10292A>T	p.Gln3431Leu	p.Q3431L	ENST00000368799	NM_002016.1	3431	cAg/cTg	0	
FCRL5	83416		GRCh37	1	157522140	157522140	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR094																					ENST00000361835.3:c.13G>A	p.Val5Met	p.V5M	ENST00000361835	NM_001195388.1	5	Gtg/Atg	0	
NCF2	4688		GRCh37	1	183536399	183536399	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR094																					ENST00000367535.3:c.795C>A	p.Asn265Lys	p.N265K	ENST00000367535	NM_000433.3	265	aaC/aaA	0	
RAB7L1			GRCh37	1	205739941	205739941	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR094																					ENST00000235932.4:c.420C>G	p.Asp140Glu	p.D140E	ENST00000235932	NM_001135662.1	140	gaC/gaG	0	
SDCCAG8	10806		GRCh37	1	243456441	243456441	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR094																					ENST00000366541.3:c.595G>C	p.Gly199Arg	p.G199R	ENST00000366541	NM_006642.3	199	Ggc/Cgc	0	
SOS1	6654		GRCh37	2	39213029	39213029	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR094																					ENST00000402219.2:c.3938A>T	p.Glu1313Val	p.E1313V	ENST00000402219	NM_005633.3	1313	gAg/gTg	0	
HAAO	23498		GRCh37	2	42996862	42996862	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			brca_smc_2018_BR094																					ENST00000294973.6:c.621T>A	p.Tyr207Ter	p.Y207*	ENST00000294973	NM_012205.2	207	taT/taA	0	
CCDC80	151887		GRCh37	3	112357399	112357399	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR094																					ENST00000206423.3:c.1354G>C	p.Glu452Gln	p.E452Q	ENST00000206423	NM_199512.1	452	Gaa/Caa	0	
CASR	846		GRCh37	3	122002890	122002890	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR094																					ENST00000490131.1:c.2089G>C	p.Val697Leu	p.V697L	ENST00000490131	NM_000388.3	697	Gtg/Ctg	0	
GPR87	53836		GRCh37	3	151012637	151012637	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR094																					ENST00000260843.4:c.397G>T	p.Gly133Trp	p.G133W	ENST00000260843	NM_023915.3	133	Ggg/Tgg	0	
MME	4311		GRCh37	3	154859781	154859781	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR094																					ENST00000360490.2:c.959C>A	p.Pro320Gln	p.P320Q	ENST00000360490	NM_007289.2	320	cCa/cAa	0	
DSPP	1834		GRCh37	4	88537341	88537341	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR094																					ENST00000282478.7:c.3527A>G	p.Asp1176Gly	p.D1176G	ENST00000282478		1176	gAc/gGc	0	
MMRN1	22915		GRCh37	4	90856290	90856290	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR094																					ENST00000264790.2:c.1459C>G	p.His487Asp	p.H487D	ENST00000264790	NM_007351.2	487	Cat/Gat	0	
ANKRD50	57182		GRCh37	4	125591428	125591428	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR094																					ENST00000504087.1:c.3004C>A	p.His1002Asn	p.H1002N	ENST00000504087	NM_020337.2	1002	Cat/Aat	0	
ATXN1	6310		GRCh37	6	16327425	16327425	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR094																					ENST00000244769.4:c.1117C>T	p.Arg373Cys	p.R373C	ENST00000244769	NM_000332.3	373	Cgt/Tgt	0	
CLIC5	53405		GRCh37	6	45870993	45870993	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BR094																					ENST00000185206.6:c.1066-1G>C		p.X356_splice	ENST00000185206	NM_001114086.1	356		0	
HCRTR2	3062		GRCh37	6	55119986	55119986	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR094																					ENST00000370862.3:c.455G>T	p.Arg152Leu	p.R152L	ENST00000370862	NM_001526.3	152	cGg/cTg	0	
MYO6	4646		GRCh37	6	76623992	76623992	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR094																					ENST00000369977.3:c.3652G>A	p.Val1218Met	p.V1218M	ENST00000369977	NM_004999.3	1218	Gtg/Atg	0	
GRM8	2918		GRCh37	7	126544639	126544639	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR094																					ENST00000339582.2:c.826C>T	p.Arg276Ter	p.R276*	ENST00000339582		276	Cga/Tga	0	
FLNC	2318		GRCh37	7	128483552	128483552	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR094																					ENST00000325888.8:c.2732A>T	p.Lys911Met	p.K911M	ENST00000325888	NM_001458.4	911	aAg/aTg	0	
TNFRSF10D	8793		GRCh37	8	23006059	23006059	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR094																					ENST00000312584.3:c.262C>A	p.His88Asn	p.H88N	ENST00000312584	NM_003840.4	88	Cat/Aat	0	
ADAM28	10863		GRCh37	8	24197036	24197036	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR094																					ENST00000265769.4:c.1625G>C	p.Gly542Ala	p.G542A	ENST00000265769	NM_014265.4	542	gGg/gCg	0	
CLVS1	157807		GRCh37	8	62289331	62289331	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR094																					ENST00000325897.4:c.623G>T	p.Gly208Val	p.G208V	ENST00000325897	NM_173519.2	208	gGg/gTg	0	
TPD52L3	89882		GRCh37	9	6328771	6328771	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR094																					ENST00000344545.5:c.176A>G	p.Glu59Gly	p.E59G	ENST00000344545	NM_033516.5	59	gAa/gGa	0	
ITIH5	80760		GRCh37	10	7679292	7679292	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR094																					ENST00000256861.6:c.551G>A	p.Arg184Lys	p.R184K	ENST00000256861	NM_030569.6	184	aGg/aAg	0	
EIF4G2	1982		GRCh37	11	10823859	10823859	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR094																					ENST00000526148.1:c.1120A>G	p.Met374Val	p.M374V	ENST00000526148	NM_001172705.1	374	Atg/Gtg	0	
CLP1	10978		GRCh37	11	57427099	57427099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR094																					ENST00000525602.1:c.151C>T	p.Arg51Ter	p.R51*	ENST00000525602		51	Cga/Tga	0	
TM7SF3	51768		GRCh37	12	27143475	27143475	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR094																					ENST00000343028.4:c.776G>C	p.Trp259Ser	p.W259S	ENST00000343028	NM_016551.2	259	tGg/tCg	0	
MYO1H	283446		GRCh37	12	109849772	109849772	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR094																					ENST00000310903.5:c.1436A>G	p.Lys479Arg	p.K479R	ENST00000310903		479	aAa/aGa	0	
NOS1	4842		GRCh37	12	117723073	117723073	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR094																					ENST00000317775.6:c.1355A>C	p.Lys452Thr	p.K452T	ENST00000317775	NM_000620.4	452	aAg/aCg	0	
EPSTI1	94240		GRCh37	13	43528140	43528140	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR094																					ENST00000398762.3:c.507G>C	p.Glu169Asp	p.E169D	ENST00000398762		169	gaG/gaC	0	
TPP2	7174		GRCh37	13	103326677	103326677	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR094																					ENST00000376065.4:c.3377G>T	p.Arg1126Met	p.R1126M	ENST00000376065	NM_003291.2	1126	aGg/aTg	0	
CCDC88C	440193		GRCh37	14	91739180	91739180	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR094																					ENST00000389857.6:c.5876G>T	p.Gly1959Val	p.G1959V	ENST00000389857	NM_001080414.3	1959	gGg/gTg	0	
CCDC88C	440193		GRCh37	14	91739181	91739181	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR094																					ENST00000389857.6:c.5875G>A	p.Gly1959Arg	p.G1959R	ENST00000389857	NM_001080414.3	1959	Ggg/Agg	0	
BEGAIN	57596		GRCh37	14	101005163	101005163	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR094																					ENST00000355173.2:c.925G>A	p.Glu309Lys	p.E309K	ENST00000355173	NM_020836.3	309	Gag/Aag	0	
BNC1	646		GRCh37	15	83932289	83932289	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR094																					ENST00000345382.2:c.1714G>T	p.Val572Phe	p.V572F	ENST00000345382	NM_001717.3	572	Gtc/Ttc	0	
WDR93	56964		GRCh37	15	90258220	90258220	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR094																					ENST00000268130.7:c.650A>T	p.Asp217Val	p.D217V	ENST00000268130	NM_020212.1	217	gAt/gTt	0	
PMM2	5373		GRCh37	16	8900243	8900243	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR094																					ENST00000268261.4:c.326A>C	p.Lys109Thr	p.K109T	ENST00000268261	NM_000303.2	109	aAa/aCa	0	
TP53	7157		GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BR094																					ENST00000269305.4:c.782+1G>C		p.X261_splice	ENST00000269305	NM_001126112.2	261		0	
MYOM1	8736		GRCh37	18	3100167	3100167	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR094																					ENST00000356443.4:c.3717C>G	p.His1239Gln	p.H1239Q	ENST00000356443	NM_019856.1	1239	caC/caG	0	
EPB41L3	23136		GRCh37	18	5419874	5419874	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR094																					ENST00000341928.2:c.1342G>T	p.Val448Phe	p.V448F	ENST00000341928	NM_012307.3	448	Gtt/Ttt	0	
LOXHD1	125336		GRCh37	18	44125284	44125284	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR094																					ENST00000300591.6:c.282C>G	p.Asp94Glu	p.D94E	ENST00000300591	NM_001145472.2	94	gaC/gaG	0	
NARS	4677		GRCh37	18	55273862	55273862	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR094																					ENST00000256854.5:c.1123C>T	p.His375Tyr	p.H375Y	ENST00000256854	NM_004539.3	375	Cat/Tat	0	
MUC16	94025		GRCh37	19	9049259	9049259	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR094																					ENST00000397910.4:c.32372G>C	p.Arg10791Pro	p.R10791P	ENST00000397910	NM_024690.2	10791	cGg/cCg	0	
RSPH6A	81492		GRCh37	19	46305430	46305430	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR094																					ENST00000221538.3:c.1746G>T	p.Glu582Asp	p.E582D	ENST00000221538	NM_030785.3	582	gaG/gaT	0	
PPFIA3	8541		GRCh37	19	49636328	49636328	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR094																					ENST00000334186.4:c.950G>T	p.Arg317Leu	p.R317L	ENST00000334186	NM_003660.3	317	cGg/cTg	0	
ZNF600	162966		GRCh37	19	53269969	53269969	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR094																					ENST00000338230.3:c.1040G>A	p.Arg347Lys	p.R347K	ENST00000338230	NM_198457.2	347	aGa/aAa	0	
SEL1L2	80343		GRCh37	20	13867032	13867032	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR094																					ENST00000284951.5:c.802G>T	p.Glu268Ter	p.E268*	ENST00000284951		268	Gaa/Taa	0	
FAM83C	128876		GRCh37	20	33876688	33876688	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR094																					ENST00000374408.3:c.587G>C	p.Arg196Pro	p.R196P	ENST00000374408	NM_178468.5	196	cGt/cCt	0	
KDELR3	11015		GRCh37	22	38870597	38870597	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR094																					ENST00000216014.4:c.161A>T	p.Asn54Ile	p.N54I	ENST00000216014	NM_006855.3	54	aAc/aTc	0	
MOV10L1	54456		GRCh37	22	50530598	50530598	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR094																					ENST00000262794.5:c.266G>T	p.Gly89Val	p.G89V	ENST00000262794	NM_018995.2	89	gGa/gTa	0	
TBL1X	6907		GRCh37	X	9677797	9677797	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR094																					ENST00000217964.7:c.1436C>A	p.Ala479Glu	p.A479E	ENST00000217964	NM_005647.3	479	gCa/gAa	0	
MAGEB2	4113		GRCh37	X	30237184	30237184	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR094																					ENST00000378988.4:c.487G>T	p.Val163Phe	p.V163F	ENST00000378988	NM_002364.4	163	Gtc/Ttc	0	
KCNE1L			GRCh37	X	108868035	108868035	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR094																					ENST00000372101.2:c.215G>C	p.Cys72Ser	p.C72S	ENST00000372101	NM_012282.2	72	tGc/tCc	0	
SOWAHD	347454		GRCh37	X	118893255	118893255	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR094																					ENST00000343905.3:c.625G>A	p.Ala209Thr	p.A209T	ENST00000343905	NM_001105576.2	209	Gcc/Acc	0	
GRIA3	2892		GRCh37	X	122537363	122537363	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR094																					ENST00000541091.1:c.1238C>G	p.Thr413Ser	p.T413S	ENST00000541091		413	aCc/aGc	0	
C8A	731		GRCh37	1	57341881	57341881	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR089																					ENST00000361249.3:c.463G>T	p.Gly155Trp	p.G155W	ENST00000361249	NM_000562.2	155	Ggg/Tgg	0	
NBAS	51594		GRCh37	2	15307236	15307236	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR089																					ENST00000281513.5:c.7052G>A	p.Arg2351Lys	p.R2351K	ENST00000281513	NM_015909.3	2351	aGg/aAg	0	
THSD7B	80731		GRCh37	2	138373832	138373832	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR089																					ENST00000272643.3:c.3520G>T	p.Val1174Leu	p.V1174L	ENST00000272643		1174	Gtg/Ttg	0	
UBE2E3	10477		GRCh37	2	181848804	181848804	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR089																					ENST00000392415.2:c.229C>T	p.Pro77Ser	p.P77S	ENST00000392415	NM_001278555.1	77	Cct/Tct	0	
SSFA2			GRCh37	2	182786798	182786798	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR089																					ENST00000431877.2:c.3334G>C	p.Glu1112Gln	p.E1112Q	ENST00000431877	NM_001130445.1	1112	Gaa/Caa	0	
CHST13	166012		GRCh37	3	126261143	126261143	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR089																					ENST00000319340.2:c.748G>A	p.Ala250Thr	p.A250T	ENST00000319340	NM_152889.2	250	Gcg/Acg	0	
SLC9A9	285195		GRCh37	3	143214184	143214184	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR089																					ENST00000316549.6:c.1196G>T	p.Gly399Val	p.G399V	ENST00000316549	NM_173653.3	399	gGa/gTa	0	
PIK3CA	5290		GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR089																					ENST00000263967.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000263967	NM_006218.2	106	Ggc/Cgc	0	
MANBA	4126		GRCh37	4	103560905	103560905	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR089																					ENST00000226578.4:c.1979A>G	p.Asn660Ser	p.N660S	ENST00000226578	NM_005908.3	660	aAt/aGt	0	
KLHL2	11275		GRCh37	4	166226770	166226770	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR089																					ENST00000226725.6:c.932T>G	p.Val311Gly	p.V311G	ENST00000226725	NM_007246.3	311	gTg/gGg	0	
PCDHB4	56131		GRCh37	5	140502646	140502646	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR089																					ENST00000194152.1:c.1066C>G	p.Pro356Ala	p.P356A	ENST00000194152	NM_018938.2	356	Cca/Gca	0	
PCDHGB1	56104		GRCh37	5	140731725	140731725	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR089																					ENST00000523390.1:c.1898C>T	p.Ala633Val	p.A633V	ENST00000523390	NM_018922.2	633	gCg/gTg	0	
PCDHGA9	56107		GRCh37	5	140782569	140782569	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR089																					ENST00000573521.1:c.50G>T	p.Cys17Phe	p.C17F	ENST00000573521	NM_018921.2	17	tGc/tTc	0	
PCDHGB7	56099		GRCh37	5	140797923	140797923	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR089																					ENST00000398594.2:c.497C>T	p.Ser166Leu	p.S166L	ENST00000398594	NM_018927.3	166	tCg/tTg	0	
GRIA1	2890		GRCh37	5	153029952	153029952	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR089																					ENST00000285900.5:c.523G>T	p.Val175Phe	p.V175F	ENST00000285900	NM_000827.3	175	Gtc/Ttc	0	
KIFC1	3833		GRCh37	6	33366155	33366155	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR089																					ENST00000428849.2:c.241C>T	p.Gln81Ter	p.Q81*	ENST00000428849	NM_002263.3	81	Cag/Tag	0	
ZNF853	54753		GRCh37	7	6661128	6661128	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR089																					ENST00000457543.3:c.506G>A	p.Arg169Gln	p.R169Q	ENST00000457543	NM_017560.1	169	cGg/cAg	0	
FAM188B			GRCh37	7	30891830	30891830	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			brca_smc_2018_BR089																					ENST00000265299.6:c.1548-2A>T		p.X516_splice	ENST00000265299	NM_032222.2	516		0	
HTR5A	3361		GRCh37	7	154875908	154875908	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR089																					ENST00000287907.2:c.785G>A	p.Arg262His	p.R262H	ENST00000287907	NM_024012.3	262	cGc/cAc	0	
RB1CC1	9821		GRCh37	8	53558287	53558287	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR089																					ENST00000025008.5:c.3962G>T	p.Arg1321Leu	p.R1321L	ENST00000025008	NM_014781.4	1321	cGa/cTa	0	
NOV			GRCh37	8	120435095	120435095	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR089																					ENST00000259526.3:c.797G>C	p.Arg266Pro	p.R266P	ENST00000259526	NM_002514.3	266	cGc/cCc	0	
BAG1	573		GRCh37	9	33256905	33256905	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR089																					ENST00000472232.3:c.779G>T	p.Gly260Val	p.G260V	ENST00000472232	NM_004323.5	260	gGt/gTt	0	
GOLM1	51280		GRCh37	9	88667508	88667508	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			brca_smc_2018_BR089																					ENST00000388711.3:c.310-2A>T		p.X104_splice	ENST00000388711	NM_177937.2	104		0	
ITIH5	80760		GRCh37	10	7659159	7659159	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR089																					ENST00000256861.6:c.739G>A	p.Ala247Thr	p.A247T	ENST00000256861	NM_030569.6	247	Gcc/Acc	0	
ANKRD30A	91074		GRCh37	10	37508264	37508264	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR089																					ENST00000361713.1:c.3456C>G	p.Asp1152Glu	p.D1152E	ENST00000361713	NM_052997.2	1152	gaC/gaG	0	
MKI67	4288		GRCh37	10	129906499	129906499	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR089																					ENST00000368654.3:c.3605G>A	p.Gly1202Glu	p.G1202E	ENST00000368654	NM_002417.4	1202	gGa/gAa	0	
SYCE1	93426		GRCh37	10	135372405	135372405	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR089																					ENST00000343131.5:c.247G>T	p.Ala83Ser	p.A83S	ENST00000343131	NM_001143764.1	83	Gcc/Tcc	0	
SPTY2D1	144108		GRCh37	11	18638485	18638485	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR089																					ENST00000336349.5:c.112G>T	p.Gly38Cys	p.G38C	ENST00000336349	NM_194285.2	38	Ggt/Tgt	0	
NAV2	89797		GRCh37	11	20065648	20065648	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR089																					ENST00000396087.3:c.3098G>C	p.Arg1033Pro	p.R1033P	ENST00000396087	NM_001244963.1	1033	cGg/cCg	0	
TROAP	10024		GRCh37	12	49724459	49724459	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR089																					ENST00000257909.3:c.1831C>T	p.Pro611Ser	p.P611S	ENST00000257909	NM_005480.3	611	Cct/Tct	0	
KRT8	3856		GRCh37	12	53293707	53293707	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR089																					ENST00000293308.6:c.833C>T	p.Ala278Val	p.A278V	ENST00000293308	NM_002273.3	278	gCt/gTt	0	
GPR12	2835		GRCh37	13	27333142	27333142	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR089																					ENST00000381436.2:c.823G>C	p.Asp275His	p.D275H	ENST00000381436		275	Gat/Cat	0	
TTC6	319089		GRCh37	14	38170536	38170536	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			brca_smc_2018_BR089																					ENST00000553443.1:c.1377-1G>T		p.X459_splice	ENST00000553443		459		0	
VPS18	57617		GRCh37	15	41192775	41192775	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR089																					ENST00000220509.5:c.1759G>T	p.Ala587Ser	p.A587S	ENST00000220509	NM_020857.2	587	Gcc/Tcc	0	
MAPK3	5595		GRCh37	16	30134491	30134491	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR089																					ENST00000263025.4:c.40C>T	p.Pro14Ser	p.P14S	ENST00000263025	NM_002746.2	14	Ccc/Tcc	0	
PITPNA	5306		GRCh37	17	1456434	1456434	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR089																					ENST00000313486.7:c.61G>A	p.Gly21Arg	p.G21R	ENST00000313486	NM_006224.3	21	Ggg/Agg	0	
ZZEF1	23140		GRCh37	17	4027302	4027302	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR089																					ENST00000381638.2:c.398C>T	p.Ala133Val	p.A133V	ENST00000381638	NM_015113.3	133	gCc/gTc	0	
GPR179	440435		GRCh37	17	36486695	36486695	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR089																					ENST00000342292.4:c.2757G>T	p.Arg919Ser	p.R919S	ENST00000342292	NM_001004334.2	919	agG/agT	0	
KRTAP9-4	85280		GRCh37	17	39406243	39406243	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR089																					ENST00000334109.2:c.271G>A	p.Asp91Asn	p.D91N	ENST00000334109	NM_033191.2	91	Gac/Aac	0	
C3	718		GRCh37	19	6682031	6682031	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR089																					ENST00000245907.6:c.4271G>T	p.Gly1424Val	p.G1424V	ENST00000245907	NM_000064.2	1424	gGt/gTt	0	
BEST2	54831		GRCh37	19	12863538	12863538	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR089																					ENST00000042931.1:c.132G>C	p.Met44Ile	p.M44I	ENST00000042931	NM_017682.2	44	atG/atC	0	
PSG9	5678		GRCh37	19	43766098	43766098	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR089																					ENST00000270077.3:c.623C>G	p.Thr208Arg	p.T208R	ENST00000270077	NM_002784.3	208	aCa/aGa	0	
PTGIR	5739		GRCh37	19	47126954	47126954	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR089																					ENST00000291294.2:c.529G>T	p.Ala177Ser	p.A177S	ENST00000291294	NM_000960.3	177	Gcc/Tcc	0	
SSTR4	6754		GRCh37	20	23016746	23016746	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR089																					ENST00000255008.3:c.626C>G	p.Ala209Gly	p.A209G	ENST00000255008	NM_001052.2	209	gCa/gGa	0	
SPECC1L	23384		GRCh37	22	24718177	24718177	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR089																					ENST00000314328.9:c.1229C>G	p.Thr410Arg	p.T410R	ENST00000314328	NM_015330.4	410	aCa/aGa	0	
PHKA1	5255		GRCh37	X	71842990	71842990	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR089																					ENST00000373542.4:c.1929C>G	p.Asn643Lys	p.N643K	ENST00000373542	NM_002637.3	643	aaC/aaG	0	
GABRA3	2556		GRCh37	X	151336984	151336984	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR089																					ENST00000370314.4:c.1195G>A	p.Val399Met	p.V399M	ENST00000370314	NM_000808.3	399	Gtg/Atg	0	
FUNDC2	65991		GRCh37	X	154261742	154261742	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR089																					ENST00000369498.3:c.198G>C	p.Trp66Cys	p.W66C	ENST00000369498	NM_023934.3	66	tgG/tgC	0	
RIF1	55183		GRCh37	2	152300197	152300197	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR182																					ENST00000243326.5:c.1960A>G	p.Thr654Ala	p.T654A	ENST00000243326		654	Acc/Gcc	0	
SCN11A	11280		GRCh37	3	38908813	38908813	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR182																					ENST00000302328.3:c.3950A>T	p.Lys1317Met	p.K1317M	ENST00000302328	NM_014139.2	1317	aAg/aTg	0	
RBM15B	29890		GRCh37	3	51430707	51430707	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR182																					ENST00000323686.4:c.1877G>A	p.Arg626Gln	p.R626Q	ENST00000323686	NM_013286.4	626	cGg/cAg	0	
FAT4	79633		GRCh37	4	126372579	126372579	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR182																					ENST00000394329.3:c.10408C>T	p.Arg3470Ter	p.R3470*	ENST00000394329	NM_024582.4	3470	Cga/Tga	0	
PAPD4			GRCh37	5	78919181	78919181	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR182																					ENST00000296783.3:c.334G>A	p.Glu112Lys	p.E112K	ENST00000296783		112	Gaa/Aaa	0	
ZFP57	346171		GRCh37	6	29640450	29640450	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR182																					ENST00000376881.3:c.1378G>A	p.Gly460Ser	p.G460S	ENST00000376881		460	Ggc/Agc	0	
CHD7	55636		GRCh37	8	61778043	61778043	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR182																					ENST00000423902.2:c.8545G>C	p.Glu2849Gln	p.E2849Q	ENST00000423902	NM_017780.3	2849	Gag/Cag	0	
CSMD3	114788		GRCh37	8	113246686	113246686	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR182																					ENST00000297405.5:c.10648G>C	p.Ala3550Pro	p.A3550P	ENST00000297405	NM_198123.1	3550	Gct/Cct	0	
CDH23	64072		GRCh37	10	73437229	73437229	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR182																					ENST00000224721.6:c.1546G>A	p.Asp516Asn	p.D516N	ENST00000224721	NM_022124.5	516	Gac/Aac	0	
KCNMA1	3778		GRCh37	10	78649222	78649222	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR182																					ENST00000286628.8:c.3448C>G	p.Gln1150Glu	p.Q1150E	ENST00000286628	NM_001161352.1	1150	Cag/Gag	0	
PNPLA2	57104		GRCh37	11	819798	819798	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR182																					ENST00000336615.4:c.80C>G	p.Ser27Cys	p.S27C	ENST00000336615	NM_020376.3	27	tCc/tGc	0	
SIK2	23235		GRCh37	11	111574145	111574145	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR182																					ENST00000304987.3:c.946G>C	p.Glu316Gln	p.E316Q	ENST00000304987	NM_015191.1	316	Gag/Cag	0	
KMT2A	4297		GRCh37	11	118373563	118373563	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BR182																					ENST00000389506.5:c.6947C>G	p.Ser2316Ter	p.S2316*	ENST00000389506		2316	tCa/tGa	0	
ZNF624	57547		GRCh37	17	16550687	16550687	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR182																					ENST00000311331.7:c.109G>C	p.Asp37His	p.D37H	ENST00000311331	NM_020787.3	37	Gat/Cat	0	
SHC2	25759		GRCh37	19	440922	440922	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR182																					ENST00000264554.6:c.479G>T	p.Cys160Phe	p.C160F	ENST00000264554	NM_012435.2	160	tGc/tTc	0	
JUND	3727		GRCh37	19	18391901	18391901	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR182																					ENST00000252818.3:c.394G>A	p.Glu132Lys	p.E132K	ENST00000252818	NM_005354.4	132	Gag/Aag	0	
NINL	22981		GRCh37	20	25436386	25436386	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR182																					ENST00000278886.6:c.3880C>G	p.Arg1294Gly	p.R1294G	ENST00000278886	NM_025176.4	1294	Cgg/Ggg	0	
SYCP2	10388		GRCh37	20	58470578	58470578	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR182																					ENST00000357552.3:c.1579C>G	p.Gln527Glu	p.Q527E	ENST00000357552		527	Caa/Gaa	0	
ZC3H7B	23264		GRCh37	22	41716716	41716716	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR182																					ENST00000352645.4:c.52C>T	p.Gln18Ter	p.Q18*	ENST00000352645	NM_017590.5	18	Cag/Tag	0	
FAM9B	171483		GRCh37	X	8998383	8998383	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR182																					ENST00000327220.5:c.200G>C	p.Arg67Thr	p.R67T	ENST00000327220		67	aGa/aCa	0	
NRK	203447		GRCh37	X	105197052	105197052	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR182																					ENST00000243300.9:c.4540G>T	p.Gly1514Ter	p.G1514*	ENST00000243300	NM_198465.2	1514	Gga/Tga	0	
TAF7	6879		GRCh37	5	140699187	140699189	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			brca_smc_2018_BR064																					ENST00000313368.5:c.423_425del	p.Lys141del	p.K141del	ENST00000313368	NM_005642.2	141	aaGAAt/aat	0	
ABCA13	154664		GRCh37	7	48237878	48237878	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BR064																					ENST00000435803.1:c.210del	p.Phe70LeufsTer46	p.F70Lfs*46	ENST00000435803	NM_152701.3	70	Ttt/tt	0	
PKHD1L1	93035		GRCh37	8	110464996	110464997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			brca_smc_2018_BR196																					ENST00000378402.5:c.6563dup	p.Ser2190IlefsTer39	p.S2190Ifs*39	ENST00000378402	NM_177531.4	2186	tgg/tgGg	0	
PTEN	5728		GRCh37	10	89720792	89720793	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TATC			brca_smc_2018_BR196																					ENST00000371953.3:c.943_944insTATC	p.Tyr315LeufsTer11	p.Y315Lfs*11	ENST00000371953	NM_000314.4	315	tat/tTATCat	0	
GATA3	2625		GRCh37	10	8111503	8111504	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			brca_smc_2018_BR063																					ENST00000346208.3:c.990dup	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/agGg	0	
KIAA1462			GRCh37	10	30317336	30317336	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BR112																					ENST00000375377.1:c.1741del	p.Cys581AlafsTer7	p.C581Afs*7	ENST00000375377	NM_020848.2	581	Tgc/gc	0	
KIAA1462			GRCh37	10	30318328	30318332	+	frameshift_variant	Frame_Shift_Del	DEL	AATGG	AATGG	-			brca_smc_2018_BR112																					ENST00000375377.1:c.745_749del	p.Pro249LysfsTer2	p.P249Kfs*2	ENST00000375377	NM_020848.2	249	CCATTa/a	0	
GATA3	2625		GRCh37	10	8115875	8115876	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			brca_smc_2018_BR018																					ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	-/G	0	
PLCZ1	89869		GRCh37	12	18841025	18841026	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BR018																					ENST00000266505.7:c.1589dup	p.Asn530LysfsTer4	p.N530Kfs*4	ENST00000266505		530	aat/aAat	0	
ZNF195	7748		GRCh37	11	3380433	3380433	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BR017																					ENST00000399602.4:c.1805del	p.Gly602GlufsTer20	p.G602Efs*20	ENST00000399602	NM_001130520.2	602	gGa/ga	0	
TP53	7157		GRCh37	17	7579364	7579365	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BR017																					ENST00000269305.4:c.323dup	p.Arg110ProfsTer39	p.R110Pfs*39	ENST00000269305	NM_001126112.2	108	ggt/gGgt	0	
TBC1D16	125058		GRCh37	17	77926553	77926553	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BR017																					ENST00000310924.2:c.844del	p.Arg282AlafsTer124	p.R282Afs*124	ENST00000310924	NM_019020.3	282	Cgc/gc	0	
WDTC1	23038		GRCh37	1	27621108	27621109	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			brca_smc_2018_BR154																					ENST00000319394.3:c.868dup	p.Glu290GlyfsTer7	p.E290Gfs*7	ENST00000319394	NM_015023.4	287	-/G	0	
ATG2B	55102		GRCh37	14	96770895	96770896	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR154																					ENST00000359933.4:c.4779dup	p.Asn1594Ter	p.N1594*	ENST00000359933	NM_018036.5	1593	cgt/cgTt	0	
SOX10	6663		GRCh37	22	38369597	38369597	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BR154																					ENST00000360880.2:c.1306del	p.Tyr436ThrfsTer66	p.Y436Tfs*66	ENST00000360880		436	Tac/ac	0	
CAP2	10486		GRCh37	6	17541301	17541302	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR128																					ENST00000229922.2:c.925dup	p.Ser309LysfsTer6	p.S309Kfs*6	ENST00000229922	NM_006366.2	308	-/A	0	
FNBP1L	54874		GRCh37	1	94001985	94001986	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TGTA			brca_smc_2018_BR038																					ENST00000271234.7:c.1087_1088insTGTA	p.Cys363LeufsTer2	p.C363Lfs*2	ENST00000271234	NM_001164473.2	363	tgt/tTGTAgt	0	
KIF9	64147		GRCh37	3	47316957	47316958	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BR038																					ENST00000265529.3:c.117dup	p.Asp40ArgfsTer9	p.D40Rfs*9	ENST00000265529		39	aaa/aaAa	0	
UNC45B	146862		GRCh37	17	33495348	33495348	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BR038																					ENST00000268876.5:c.1424del	p.Asn475MetfsTer49	p.N475Mfs*49	ENST00000268876	NM_173167.2	474	Aaa/aa	0	
FER1L6	654463		GRCh37	8	124968256	124968258	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			brca_smc_2018_BR136																					ENST00000399018.1:c.26_28del	p.Lys9del	p.K9del	ENST00000399018		6	gtGAAg/gtg	0	
SF1	7536		GRCh37	11	64534503	64534504	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGC			brca_smc_2018_BR127																					ENST00000377390.3:c.1450_1451insGCC	p.Pro483_Pro484insArg	p.P483_P484insR	ENST00000377390	NM_004630.3	484	cct/cGCCct	0	
NCOR1	9611		GRCh37	17	16040644	16040645	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			brca_smc_2018_BR127																					ENST00000268712.3:c.1489_1490insTA	p.Lys497IlefsTer19	p.K497Ifs*19	ENST00000268712	NM_006311.3	497	aaa/aTAaa	0	
RPGR	6103		GRCh37	X	38178143	38178144	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR077																					ENST00000339363.3:c.408dup	p.Thr137TyrfsTer5	p.T137Yfs*5	ENST00000339363		136	ttt/ttTt	0	
TP53	7157		GRCh37	17	7577148	7577148	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BR090																					ENST00000269305.4:c.790del	p.Leu264TyrfsTer81	p.L264Yfs*81	ENST00000269305	NM_001126112.2	264	Cta/ta	0	
KRTAP4-3	85290		GRCh37	17	39324139	39324140	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCAGCAGCTGGGTT			brca_smc_2018_BR090																					ENST00000391356.2:c.286_287insACCCAGCTGCTGCAA	p.Cys95_Arg96insAsnProAlaAlaAla	p.C95_R96insNPAAA	ENST00000391356	NM_033187.1	95	-/AACCCAGCTGCTGCA	0	
SH3BP5	9467		GRCh37	3	15373827	15373828	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCT			brca_smc_2018_BR167																					ENST00000383791.3:c.88_89insAGGG	p.Gly30GlufsTer30	p.G30Efs*30	ENST00000383791	NM_004844.4	30	ggg/gAGGGgg	0	
FANCM	57697		GRCh37	14	45636162	45636163	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			brca_smc_2018_BR091																					ENST00000267430.5:c.1798_1799del	p.Gln600GlufsTer10	p.Q600Efs*10	ENST00000267430	NM_020937.2	600	CAg/g	0	
AGBL1	123624		GRCh37	15	86807693	86807694	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR091																					ENST00000441037.2:c.1160dup	p.Asn387LysfsTer14	p.N387Kfs*14	ENST00000441037	NM_152336.2	385	aaa/aAaa	0	
TENM2	57451		GRCh37	5	167645311	167645315	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCC	CTGCC	-			brca_smc_2018_BR194																					ENST00000518659.1:c.4418_4422del	p.Ala1473GlyfsTer18	p.A1473Gfs*18	ENST00000518659	NM_001122679.1	1472	tCTGCC/t	0	
MLLT4			GRCh37	6	168323588	168323588	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BR194																					ENST00000447894.2:c.2943del	p.Phe981LeufsTer21	p.F981Lfs*21	ENST00000447894		980	taT/ta	0	
GATA3	2625		GRCh37	10	8115956	8115957	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BR114																					ENST00000346208.3:c.1305dup	p.Ser436LeufsTer71	p.S436Lfs*71	ENST00000346208		434	-/C	0	
OR6P1	128366		GRCh37	1	158533330	158533331	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGT			brca_smc_2018_BR121																					ENST00000334632.1:c.64_65insACCA	p.Pro22HisfsTer71	p.P22Hfs*71	ENST00000334632	NM_001160325.1	22	ccc/cACCAcc	0	
HLA-DRB5	3127		GRCh37	6	32489748	32489749	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			brca_smc_2018_BR121																					ENST00000374975.3:c.304_305insGG	p.Ala102GlyfsTer28	p.A102Gfs*28	ENST00000374975	NM_002125.3	101	-/GG	0	
CLN8	2055		GRCh37	8	1719332	1719333	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTCT			brca_smc_2018_BR121																					ENST00000331222.4:c.112_113insGTCT	p.Val38GlyfsTer81	p.V38Gfs*81	ENST00000331222	NM_018941.3	38	gtc/gGTCTtc	0	
CA12	771		GRCh37	15	63634260	63634286	+	inframe_deletion	In_Frame_Del	DEL	CAGGATAAAGGTCTGAGTTATAATGGA	CAGGATAAAGGTCTGAGTTATAATGGA	-			brca_smc_2018_BR121																					ENST00000178638.3:c.440_466del	p.Val147_Pro155del	p.V147_P155del	ENST00000178638	NM_001218.3	147	gTCCATTATAACTCAGACCTTTATCCTGac/gac	0	
FUK	197258		GRCh37	16	70508511	70508511	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BR121																					ENST00000288078.6:c.2069del	p.Gln690ArgfsTer82	p.Q690Rfs*82	ENST00000288078	NM_145059.2	690	cAg/cg	0	
NLRP8	126205		GRCh37	19	56466493	56466493	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BR121																					ENST00000291971.3:c.1071del	p.Phe357LeufsTer24	p.F357Lfs*24	ENST00000291971	NM_176811.2	357	Ttt/tt	0	
MCF2	4168		GRCh37	X	138701781	138701782	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BR121																					ENST00000370576.4:c.772dup	p.Ile258AsnfsTer9	p.I258Nfs*9	ENST00000370576	NM_005369.4	257	-/A	0	
FBN2	2201		GRCh37	5	127641592	127641593	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			brca_smc_2018_BR124																					ENST00000262464.4:c.5470_5471del	p.Cys1824HisfsTer2	p.C1824Hfs*2	ENST00000262464	NM_001999.3	1824	TGc/c	0	
UBE4A	9354		GRCh37	11	118245711	118245738	+	frameshift_variant	Frame_Shift_Del	DEL	GTTTGCATGCAAATGCAGGCCGCACCAA	GTTTGCATGCAAATGCAGGCCGCACCAA	-			brca_smc_2018_BR124																					ENST00000252108.3:c.1218_1245del	p.Cys406Ter	p.C406*	ENST00000252108	NM_001204077.1	406	tGTTTGCATGCAAATGCAGGCCGCACCAAg/tg	0	
BRCA2	675		GRCh37	13	32954023	32954024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR124																					ENST00000380152.3:c.9097dup	p.Thr3033AsnfsTer11	p.T3033Nfs*11	ENST00000380152		3030	-/A	0	
AR	367		GRCh37	X	66765174	66765175	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			brca_smc_2018_BR124																					ENST00000374690.3:c.186_187insGCA	p.Gln62_Gln63insAla	p.Q62_Q63insA	ENST00000374690	NM_000044.3	62	-/GCA	0	
TMEM41B	440026		GRCh37	11	9304992	9304993	+	frameshift_variant,NMD_transcript_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BR016																					ENST00000299596.4:c.855dup	p.Leu286ThrfsTer6	p.L286Tfs*6	ENST00000299596		285	aaa/aaAa	0	
MON2	23041		GRCh37	12	62986430	62986432	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			brca_smc_2018_BR016																					ENST00000393630.3:c.5064_5066del	p.Ser1689del	p.S1689del	ENST00000393630		1686	tgTTCt/tgt	0	
REG1B	5968		GRCh37	2	79313492	79313492	+	splice_donor_variant	Splice_Site	DEL	C	C	-			brca_smc_2018_BR094																					ENST00000305089.3:c.321+1del		p.X107_splice	ENST00000305089	NM_006507.3	107		0	
MGRN1	23295		GRCh37	16	4733257	4733258	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			brca_smc_2018_BR094																					ENST00000399577.5:c.1515dup	p.Ser506ValfsTer12	p.S506Vfs*12	ENST00000399577	NM_001142290.2	505	-/G	0	
SOX7	83595		GRCh37	8	10584072	10584086	+	inframe_deletion	In_Frame_Del	DEL	GGTACTTGTAGTTGG	GGTACTTGTAGTTGG	-			brca_smc_2018_BR164																					ENST00000304501.1:c.329_343del	p.Pro110_Tyr114del	p.P110_Y114del	ENST00000304501	NM_031439.3	110	cCCAACTACAAGTACCgg/cgg	0	
TP53	7157		GRCh37	17	7577560	7577560	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BR164																					ENST00000269305.4:c.721del	p.Ser241ProfsTer6	p.S241Pfs*6	ENST00000269305	NM_001126112.2	241	Tcc/cc	0	
ZCCHC11			GRCh37	1	52991433	52991434	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			brca_smc_2018_BR085																					ENST00000371544.3:c.519_520del	p.Lys174AspfsTer23	p.K174Dfs*23	ENST00000371544	NM_015269.2	173	caGAag/caag	0	
JAK3	3718		GRCh37	19	17940946	17940946	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BR085																					ENST00000458235.1:c.3178del	p.Leu1060CysfsTer15	p.L1060Cfs*15	ENST00000458235	NM_000215.3	1060	Ctg/tg	0	
TP53	7157		GRCh37	17	7578284	7578284	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BR079																					ENST00000269305.4:c.565del	p.Ala189ProfsTer58	p.A189Pfs*58	ENST00000269305	NM_001126112.2	189	Gcc/cc	0	
ARID1A	8289		GRCh37	1	27101593	27101594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR103																					ENST00000324856.7:c.4875dup	p.Ala1626SerfsTer22	p.A1626Sfs*22	ENST00000324856	NM_006015.4	1625	-/A	0	
ARID1A	8289		GRCh37	1	27105651	27105652	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BR103																					ENST00000324856.7:c.5262dup	p.Ser1755Ter	p.S1755*	ENST00000324856	NM_006015.4	1754	-/T	0	
HSPD1	3329		GRCh37	2	198352662	198352662	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BR103																					ENST00000345042.2:c.1489del	p.Ser497ValfsTer15	p.S497Vfs*15	ENST00000345042	NM_199440.1	497	Agt/gt	0	
C9orf172			GRCh37	9	139740699	139740699	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BR103																					ENST00000436881.1:c.1834del	p.Arg612AspfsTer51	p.R612Dfs*51	ENST00000436881	NM_001080482.2	611	cgC/cg	0	
CUL5	8065		GRCh37	11	107920683	107920683	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BR103																					ENST00000393094.2:c.303del	p.Phe101LeufsTer14	p.F101Lfs*14	ENST00000393094	NM_003478.3	101	Ttt/tt	0	
SEC63	11231		GRCh37	6	108214755	108214755	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BR106																					ENST00000369002.4:c.1605del	p.Lys535AsnfsTer28	p.K535Nfs*28	ENST00000369002	NM_007214.4	535	aaA/aa	0	
GATA3	2625		GRCh37	10	8111514	8111515	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			brca_smc_2018_BR106																					ENST00000346208.3:c.1002_1003dup	p.Asp335GlyfsTer21	p.D335Gfs*21	ENST00000346208		334	ggg/gGGgg	0	
SLC23A2	9962		GRCh37	20	4850569	4850569	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BR106																					ENST00000338244.1:c.1233del	p.Ile412SerfsTer4	p.I412Sfs*4	ENST00000338244	NM_005116.5	411	ccC/cc	0	
LRP1B	53353		GRCh37	2	141243012	141243013	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTT			brca_smc_2018_BR100																					ENST00000389484.3:c.9323_9325dup	p.Lys3108dup	p.K3108dup	ENST00000389484	NM_018557.2	3108	-/AAA	0	
GPR128			GRCh37	3	100356147	100356167	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CAAAGAAAGTTGCCATAGTAA	CAAAGAAAGTTGCCATAGTAA	-			brca_smc_2018_BR100																					ENST00000273352.3:c.601_621del	p.Lys201_Thr207del	p.K201_T207del	ENST00000273352	NM_032787.2	200	gCAAAGAAAGTTGCCATAGTAAca/gca	0	
HSD17B8	7923		GRCh37	6	33172958	33172997	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TTGTGGGGGGTTTTTGATGCGTAACCTCCCCCTCCCATAG	TTGTGGGGGGTTTTTGATGCGTAACCTCCCCCTCCCATAG	-			brca_smc_2018_BR100																					ENST00000374662.3:c.271-40_271-1del		p.X91_splice	ENST00000374662	NM_014234.4	91		0	
PRKDC	5591		GRCh37	8	48777138	48777155	+	inframe_deletion	In_Frame_Del	DEL	CACATCAATGGCATCCAC	CACATCAATGGCATCCAC	-			brca_smc_2018_BR100																					ENST00000314191.2:c.5530_5547del	p.Val1844_Val1849del	p.V1844_V1849del	ENST00000314191	NM_006904.6	1844	GTGGATGCCATTGATGTG/-	0	
SLC24A2	25769		GRCh37	9	19786706	19786706	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BR100																					ENST00000341998.2:c.159del	p.Ser55GlnfsTer19	p.S55Qfs*19	ENST00000341998	NM_001193288.2	53	tcA/tc	0	
LAD1	3898		GRCh37	1	201355924	201355926	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			brca_smc_2018_BR071																					ENST00000391967.2:c.563_565del	p.Lys188del	p.K188del	ENST00000391967	NM_005558.3	188	aAGAcg/acg	0	
HSD17B11	51170		GRCh37	4	88303407	88303409	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTT	CTT	-			brca_smc_2018_BR071																					ENST00000358290.4:c.316_318del	p.Lys106del	p.K106del	ENST00000358290	NM_016245.3	106	AAG/-	0	
PRKDC	5591		GRCh37	8	48733501	48733505	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TTTCC	TTTCC	-			brca_smc_2018_BR071																					ENST00000314191.2:c.9109-1_9112del		p.X3037_splice	ENST00000314191	NM_006904.6	3037		0	
NOTCH3	4854		GRCh37	19	15276608	15276609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BR071																					ENST00000263388.2:c.5657dup	p.Val1887CysfsTer45	p.V1887Cfs*45	ENST00000263388	NM_000435.2	1886	ggt/gGgt	0	
ARID1A	8289		GRCh37	1	27105746	27105746	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BR052																					ENST00000324856.7:c.5357del	p.Glu1786GlyfsTer3	p.E1786Gfs*3	ENST00000324856	NM_006015.4	1786	gAg/gg	0	
ZYG11B	79699		GRCh37	1	53236850	53236851	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR105																					ENST00000294353.6:c.355dup	p.Ile119AsnfsTer13	p.I119Nfs*13	ENST00000294353	NM_024646.2	119	atc/aAtc	0	
MARCH1	64757		GRCh37	1	220964923	220964924	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAG			brca_smc_2018_BR105																					ENST00000366910.5:c.366_367insCAG	p.Asp122_Thr123insGln	p.D122_T123insQ	ENST00000366910	NM_022746.3	122	-/CAG	0	
LRP1B	53353		GRCh37	2	141625756	141625756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BR105																					ENST00000389484.3:c.4246del	p.Thr1416ProfsTer6	p.T1416Pfs*6	ENST00000389484	NM_018557.2	1416	Acc/cc	0	
TP53	7157		GRCh37	17	7579364	7579365	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BR105																					ENST00000269305.4:c.323dup	p.Arg110ProfsTer39	p.R110Pfs*39	ENST00000269305	NM_001126112.2	108	ggt/gGgt	0	
GATA3	2625		GRCh37	10	8115953	8115954	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BR043																					ENST00000346208.3:c.1300dup	p.His434ProfsTer73	p.H434Pfs*73	ENST00000346208		433	-/C	0	
C8orf86	389649		GRCh37	8	38386072	38386104	+	inframe_deletion	In_Frame_Del	DEL	GCAGTCTCTAAGGCTCCTGCCAACTCCAAGATT	GCAGTCTCTAAGGCTCCTGCCAACTCCAAGATT	-			brca_smc_2018_BR200																					ENST00000358138.1:c.52_84del	p.Asn18_Cys28del	p.N18_C28del	ENST00000358138	NM_207412.1	18	AATCTTGGAGTTGGCAGGAGCCTTAGAGACTGC/-	0	
IRS2	8660		GRCh37	13	110435744	110435773	+	inframe_deletion	In_Frame_Del	DEL	CGGCCGCGCTGGCCCAAGAAGCCCTCCGGG	CGGCCGCGCTGGCCCAAGAAGCCCTCCGGG	-			brca_smc_2018_BR200																					ENST00000375856.3:c.2628_2657del	p.Pro877_Arg886del	p.P877_R886del	ENST00000375856	NM_003749.2	876	cgCCCGGAGGGCTTCTTGGGCCAGCGCGGCCGg/cgg	0	
SLFN12	55106		GRCh37	17	33749493	33749493	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BR200																					ENST00000304905.5:c.555del	p.Phe185LeufsTer12	p.F185Lfs*12	ENST00000304905	NM_018042.3	185	ttT/tt	0	
WDR62	284403		GRCh37	19	36572399	36572414	+	frameshift_variant	Frame_Shift_Del	DEL	CAGACAACACCATTCG	CAGACAACACCATTCG	-			brca_smc_2018_BR200																					ENST00000270301.7:c.1299_1314del	p.Asp434SerfsTer22	p.D434Sfs*22	ENST00000270301		433	tCAGACAACACCATTCGc/tc	0	
PIK3R1	5295		GRCh37	5	67589592	67589593	+	stop_gained	Nonsense_Mutation	INS	-	-	ATA			brca_smc_2018_BR029																					ENST00000521381.1:c.1353_1355dup	p.Glu451_Tyr452insTer	p.E451_Y452ins*	ENST00000521381	NM_181523.2	452	tat/taATAt	0	
EHBP1	23301		GRCh37	2	63220699	63220700	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR060																					ENST00000263991.5:c.2986dup	p.Thr996AsnfsTer6	p.T996Nfs*6	ENST00000263991	NM_015252.3	994	caa/caAa	0	
GATA3	2625		GRCh37	10	8115875	8115879	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCT	GCCCT	-			brca_smc_2018_BR060																					ENST00000346208.3:c.1221_1225del	p.Pro408GlnfsTer97	p.P408Qfs*97	ENST00000346208		407	tcGCCCTtc/tctc	0	
ZFYVE16	9765		GRCh37	5	79752368	79752368	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BR195																					ENST00000338008.5:c.3780del	p.Lys1262SerfsTer5	p.K1262Sfs*5	ENST00000338008	NM_014733.3	1260	cGg/cg	0	
AZGP1	563		GRCh37	7	99569596	99569597	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR195																					ENST00000292401.4:c.110dup	p.Ser38ValfsTer5	p.S38Vfs*5	ENST00000292401	NM_001185.3	37	ctg/cTtg	0	
AP4B1	10717		GRCh37	1	114438587	114438587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BR078																					ENST00000256658.4:c.1584del	p.Val529LeufsTer25	p.V529Lfs*25	ENST00000256658	NM_006594.3	528	gaA/ga	0	
TP53	7157		GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			brca_smc_2018_BR080																					ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca	0	
TP53	7157		GRCh37	17	7578236	7578237	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR145																					ENST00000269305.4:c.613dup	p.Tyr205LeufsTer4	p.Y205Lfs*4	ENST00000269305	NM_001126112.2	204	-/T	0	
RP11-435B5.5			GRCh37	1	143392657	143392658	+	splice_donor_variant,non_coding_transcript_variant	Splice_Site	DEL	GT	GT	-			brca_smc_2018_BR042																					ENST00000428624.1:n.2279+1_2279+2del		p.X760_splice	ENST00000428624		760		0	
WDR60	55112		GRCh37	7	158672510	158672511	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			brca_smc_2018_BR042																					ENST00000407559.3:c.714_715del	p.Lys239IlefsTer7	p.K239Ifs*7	ENST00000407559	NM_018051.4	237	AGa/a	0	
RSU1	6251		GRCh37	10	16635444	16635446	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			brca_smc_2018_BR042																					ENST00000345264.5:c.781_783del	p.Asn261del	p.N261del	ENST00000345264	NM_012425.3	261	AAT/-	0	
TJP1	7082		GRCh37	15	30053953	30053954	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			brca_smc_2018_BR042																					ENST00000346128.6:c.712_713del	p.Glu238LysfsTer15	p.E238Kfs*15	ENST00000346128	NM_175610.2	238	GAa/a	0	
ALG13	79868		GRCh37	X	110987954	110987955	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACC			brca_smc_2018_BR188																					ENST00000394780.3:c.2754_2755insACC	p.Leu918_Pro919insThr	p.L918_P919insT	ENST00000394780	NM_001257231.1	918	-/ACC	0	
UNC5A	90249		GRCh37	5	176304957	176304960	+	frameshift_variant	Frame_Shift_Del	DEL	TGCC	TGCC	-			brca_smc_2018_BR048																					ENST00000329542.4:c.1701_1704del	p.Cys568ThrfsTer68	p.C568Tfs*68	ENST00000329542	NM_133369.2	566	agTGCC/ag	0	
GATA3	2625		GRCh37	10	8100728	8100729	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BR161																					ENST00000346208.3:c.708dup	p.Ser237GlnfsTer66	p.S237Qfs*66	ENST00000346208		234	-/C	0	
ZFP36L1	677		GRCh37	14	69257101	69257104	+	frameshift_variant	Frame_Shift_Del	DEL	TGAC	TGAC	-			brca_smc_2018_BR161																					ENST00000336440.3:c.163_166del	p.Val55ProfsTer24	p.V55Pfs*24	ENST00000336440		55	GTCAcc/cc	0	
CRIPAK	285464		GRCh37	4	1389055	1389056	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			brca_smc_2018_BR175																					ENST00000324803.4:c.756_757insCA	p.Thr253GlnfsTer177	p.T253Qfs*177	ENST00000324803	NM_175918.3	252	-/CA	0	
APOBR	55911		GRCh37	16	28507415	28507417	+	splice_region_variant,intron_variant	Splice_Region	DEL	GGA	GGA	-			brca_smc_2018_BR175																					ENST00000431282.1:c.1048+10_1048+12del		p.X350_splice	ENST00000431282		350		0	
GATA3	2625		GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BR170																					ENST00000346208.3:c.1220dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcCg	0	
PDX1	3651		GRCh37	13	28498396	28498397	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			brca_smc_2018_BR041																					ENST00000381033.4:c.412_413del	p.Ala138LeufsTer86	p.A138Lfs*86	ENST00000381033	NM_000209.3	137	gGC/g	0	
HSPH1	10808		GRCh37	13	31727075	31727077	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			brca_smc_2018_BR041																					ENST00000320027.5:c.441_443del	p.Phe148del	p.F148del	ENST00000320027	NM_006644.2	147	ttCTTt/ttt	0	
NEFH	4744		GRCh37	22	29885589	29885590	+	stop_gained,protein_altering_variant	Nonsense_Mutation	INS	-	-	TCCCCTGAGAAGGCCAAG			brca_smc_2018_BR041																					ENST00000310624.6:c.1960_1961insTCCCCTGAGAAGGCCAAG	p.Ser654delinsPheProTer	p.S654delinsFP*	ENST00000310624	NM_021076.3	654	tcc/tTCCCCTGAGAAGGCCAAGcc	0	
BDP1	55814		GRCh37	5	70840935	70840945	+	frameshift_variant	Frame_Shift_Del	DEL	GACAGGGCCCT	GACAGGGCCCT	-			brca_smc_2018_BR069																					ENST00000358731.4:c.6634_6644del	p.Thr2212HisfsTer6	p.T2212Hfs*6	ENST00000358731	NM_018429.2	2211	gaGACAGGGCCCTgc/gagc	0	
CSGALNACT2	55454		GRCh37	10	43662492	43662492	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BR069																					ENST00000374466.3:c.1200del	p.Pro401LeufsTer34	p.P401Lfs*34	ENST00000374466	NM_018590.4	400	aaT/aa	0	
PRPF19	27339		GRCh37	11	60668818	60668820	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			brca_smc_2018_BR069																					ENST00000227524.4:c.589_591del	p.Glu197del	p.E197del	ENST00000227524	NM_014502.4	197	GAG/-	0	
AP000769.1			GRCh37	11	65222776	65222777	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			brca_smc_2018_BR069																					ENST00000309775.7:c.50dup	p.Leu18ProfsTer20	p.L18Pfs*20	ENST00000309775		17	ggc/gGgc	0	
RPN2	6185		GRCh37	20	35858450	35858451	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			brca_smc_2018_BR069																					ENST00000237530.6:c.1569_1570insAC	p.Gln524ThrfsTer26	p.Q524Tfs*26	ENST00000237530	NM_002951.3	523	-/AC	0	
GATA3	2625		GRCh37	10	8115875	8115876	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			brca_smc_2018_BR183																					ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	-/G	0	
TRIM66	9866		GRCh37	11	8661991	8661992	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			brca_smc_2018_BR183																					ENST00000299550.6:c.1496dup	p.Ala500CysfsTer14	p.A500Cfs*14	ENST00000299550	NM_014818.1	499	cct/cCct	0	
PADI3	51702		GRCh37	1	17606923	17606923	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BR097																					ENST00000375460.3:c.1634del	p.Gln545ArgfsTer11	p.Q545Rfs*11	ENST00000375460	NM_016233.2	545	cAg/cg	0	
NVL	4931		GRCh37	1	224463133	224463133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BR097																					ENST00000281701.6:c.1990del	p.Arg664AspfsTer14	p.R664Dfs*14	ENST00000281701	NM_002533.3	664	Cga/ga	0	
TTN	7273		GRCh37	2	179425656	179425659	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			brca_smc_2018_BR097																					ENST00000591111.1:c.80277_80280del	p.Arg26760GlnfsTer14	p.R26760Qfs*14	ENST00000591111		26759	gaAAGA/ga	0	
KALRN	8997		GRCh37	3	124053162	124053162	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BR097																					ENST00000240874.3:c.1463del	p.Pro488LeufsTer111	p.P488Lfs*111	ENST00000240874	NM_003947.4	487	agC/ag	0	
FOXO3	2309		GRCh37	6	108984997	108984997	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BR097																					ENST00000343882.6:c.961del	p.Ser321ValfsTer38	p.S321Vfs*38	ENST00000343882	NM_201559.2	321	Agt/gt	0	
CSPP1	79848		GRCh37	8	68071296	68071297	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAG			brca_smc_2018_BR097																					ENST00000262210.5:c.2448_2449insAGA	p.Lys816_Glu817insArg	p.K816_E817insR	ENST00000262210	NM_024790.6	816	aaa/aaAAGa	0	
NR4A3	8013		GRCh37	9	102590616	102590617	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAC			brca_smc_2018_BR097																					ENST00000395097.2:c.292_293insCAC	p.His97_His98insPro	p.H97_H98insP	ENST00000395097	NM_173200.2	98	cac/cCACac	0	
TRDC	28526		GRCh37	14	22932104	22932104	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BR097																					ENST00000390477.2:c.182del	p.Gly62ValfsTer9	p.G62Vfs*9	ENST00000390477		61	cTt/ct	0	
MOK	5891		GRCh37	14	102718303	102718304	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BR097																					ENST00000361847.2:c.313dup	p.Ile105AsnfsTer10	p.I105Nfs*10	ENST00000361847	NM_014226.2	104	-/A	0	
BNIPL	149428		GRCh37	1	151018598	151018600	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			brca_smc_2018_BR143																					ENST00000368931.3:c.994_996del	p.Leu332del	p.L332del	ENST00000368931	NM_138278.3	332	CTC/-	0	
GATA3	2625		GRCh37	10	8115944	8115945	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGAC			brca_smc_2018_BR143																					ENST00000346208.3:c.1290_1291insTGGAC	p.Gly431TrpfsTer46	p.G431Wfs*46	ENST00000346208		430	-/TGGAC	0	
RASAL1	8437		GRCh37	12	113557009	113557010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			brca_smc_2018_BR088																					ENST00000261729.5:c.565_566insAA	p.Met189LysfsTer65	p.M189Kfs*65	ENST00000261729		189	atg/aAAtg	0	
SPTBN4	57731		GRCh37	19	41018674	41018675	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			brca_smc_2018_BR088																					ENST00000352632.3:c.1983_1984del	p.Asp662GlnfsTer28	p.D662Qfs*28	ENST00000352632		660	GCg/g	0	
SNRNP70	6625		GRCh37	19	49589712	49589712	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BR088																					ENST00000598441.1:c.46del	p.Arg16ValfsTer95	p.R16Vfs*95	ENST00000598441		14	gCc/gc	0	
SIM2	6493		GRCh37	21	38095368	38095368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BR088																					ENST00000290399.6:c.480del	p.Leu162PhefsTer3	p.L162Ffs*3	ENST00000290399	NM_005069.3	160	ttC/tt	0	
PRDM16	63976		GRCh37	1	3350287	3350287	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BR023																					ENST00000270722.5:c.3747del	p.Ser1250ProfsTer9	p.S1250Pfs*9	ENST00000270722		1248	aCc/ac	0	
TGOLN2	10618		GRCh37	2	85554242	85554242	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BR023																					ENST00000409232.3:c.613del	p.Asp205ThrfsTer28	p.D205Tfs*28	ENST00000409232		205	Gac/ac	0	
USP5	8078		GRCh37	12	6972399	6972399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BR023																					ENST00000229268.8:c.1812del	p.Thr605GlnfsTer85	p.T605Qfs*85	ENST00000229268	NM_001098536.1	604	ggC/gg	0	
ZNF546	339327		GRCh37	19	40514388	40514388	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BR023																					ENST00000347077.4:c.311del	p.Pro104LeufsTer5	p.P104Lfs*5	ENST00000347077	NM_178544.3	104	Cct/ct	0	
RBMX	27316		GRCh37	X	135960147	135960148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			brca_smc_2018_BR023																					ENST00000320676.7:c.315_316insTT	p.Pro106PhefsTer32	p.P106Ffs*32	ENST00000320676	NM_002139.3	105	cct/ccTTt	0	
OR6C68	403284		GRCh37	12	55887071	55887072	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR089																					ENST00000548615.1:c.916dup	p.Ile306AsnfsTer?	p.I306Nfs*?	ENST00000548615	NM_001005519.2	304	aaa/aAaa	0	
CCDC8	83987		GRCh37	19	46915568	46915569	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BR089																					ENST00000307522.3:c.499_500insA	p.Pro167HisfsTer15	p.P167Hfs*15	ENST00000307522	NM_032040.4	167	ccg/cAcg	0	
LAMP3	27074		GRCh37	3	182870285	182870286	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR108																					ENST00000265598.3:c.766dup	p.Ser256PhefsTer43	p.S256Ffs*43	ENST00000265598	NM_014398.3	255	-/T	0	
DSPP	1834		GRCh37	4	88537487	88537488	+	stop_gained	Nonsense_Mutation	INS	-	-	AGCAATGAA			brca_smc_2018_BR108																					ENST00000282478.7:c.3673_3674insAGCAATGAA	p.Asp1224_Ser1225insLysGlnTer	p.D1224_S1225insKQ*	ENST00000282478		1225	agc/aAGCAATGAAgc	0	
MAGI2	9863		GRCh37	7	78256437	78256437	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BR108																					ENST00000354212.4:c.537del	p.Asp180ThrfsTer18	p.D180Tfs*18	ENST00000354212	NM_012301.3	179	gaA/ga	0	
CPA1	1357		GRCh37	7	130025750	130025750	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BR108																					ENST00000011292.3:c.1058del	p.Ile353ThrfsTer56	p.I353Tfs*56	ENST00000011292	NM_001868.2	353	aTc/ac	0	
SLITRK1	114798		GRCh37	13	84453629	84453632	+	frameshift_variant	Frame_Shift_Del	DEL	AGGA	AGGA	-			brca_smc_2018_BR108																					ENST00000377084.2:c.2011_2014del	p.Ser671ThrfsTer66	p.S671Tfs*66	ENST00000377084	NM_052910.2	671	TCCTac/ac	0	
ZBTB43	23099		GRCh37	9	129595923	129595923	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BR152																					ENST00000373457.1:c.1138del	p.Ser380ValfsTer12	p.S380Vfs*12	ENST00000373457		379	Aaa/aa	0	
GATA3	2625		GRCh37	10	8115953	8115954	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCACC			brca_smc_2018_BR152																					ENST00000346208.3:c.1300_1301insCACCC	p.His434ProfsTer43	p.H434Pfs*43	ENST00000346208		433	-/CCACC	0	
MEN1	4221		GRCh37	11	64577476	64577487	+	inframe_deletion	In_Frame_Del	DEL	GCACCAGGTCCG	GCACCAGGTCCG	-			brca_smc_2018_BR152																					ENST00000337652.1:c.95_106del	p.Pro32_Val35del	p.P32_V35del	ENST00000337652	NM_130803.2	32	cCGGACCTGGTGCtc/ctc	0	
MAP3K1	4214		GRCh37	5	56160564	56160565	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			brca_smc_2018_BR135																					ENST00000399503.3:c.838_839del	p.Gln280GlufsTer20	p.Q280Efs*20	ENST00000399503	NM_005921.1	280	CAg/g	0	
SLC35E3	55508		GRCh37	12	69153010	69153011	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			brca_smc_2018_BR187																					ENST00000398004.2:c.746_747insCA	p.Pro250AsnfsTer84	p.P250Nfs*84	ENST00000398004	NM_018656.2	249	tca/tcCAa	0	
NBPF6	653149		GRCh37	1	109010194	109010204	+	3_prime_UTR_variant	3'UTR	DEL	TGTCCTGATAC	TGTCCTGATAC	-			brca_smc_2018_BR067																					ENST00000294652.8:c.*1051_*1061del		p.*351*	ENST00000294652				0	
LARP7	51574		GRCh37	4	113568989	113569023	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGTAAGTCTGTGGTTTAAATTCTGTCATTGGCTT	AAGTAAGTCTGTGGTTTAAATTCTGTCATTGGCTT	-			brca_smc_2018_BR067																					ENST00000324052.6:c.1142+1_1142+35del		p.X381_splice	ENST00000324052	NM_015454.2	381		0	
SHPRH	257218		GRCh37	6	146256075	146256075	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BR067																					ENST00000275233.7:c.2958del	p.Val987PhefsTer13	p.V987Ffs*13	ENST00000275233		986	gcT/gc	0	
TP53	7157		GRCh37	17	7577022	7577022	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BR067																					ENST00000269305.4:c.916del	p.Arg306GlufsTer39	p.R306Efs*39	ENST00000269305	NM_001126112.2	306	Cga/ga	0	
KALRN	8997		GRCh37	3	123988087	123988087	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_002																					ENST00000240874.3:c.948G>C	p.Glu316Asp	p.E316D	ENST00000240874	NM_003947.4	316	gaG/gaC	0	
ANK2	287		GRCh37	4	114195720	114195720	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_002																					ENST00000357077.4:c.1598C>T	p.Pro533Leu	p.P533L	ENST00000357077	NM_001148.4	533	cCa/cTa	0	
SORBS2	8470		GRCh37	4	186539742	186539742	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_002																					ENST00000284776.7:c.2636C>G	p.Ser879Cys	p.S879C	ENST00000284776	NM_021069.4	879	tCt/tGt	0	
PCDHA11	56138		GRCh37	5	140250828	140250828	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_002																					ENST00000398640.2:c.2140C>G	p.Leu714Val	p.L714V	ENST00000398640	NM_018902.3	714	Ctg/Gtg	0	
WRNIP1	56897		GRCh37	6	2766210	2766210	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_002																					ENST00000380773.4:c.354C>A	p.Ser118Arg	p.S118R	ENST00000380773	NM_020135.2	118	agC/agA	0	
ST7	7982		GRCh37	7	116870136	116870136	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_002																					ENST00000446490.1:c.1657A>T	p.Lys553Ter	p.K553*	ENST00000446490		553	Aaa/Taa	0	
HTR5A	3361		GRCh37	7	154862859	154862859	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_002																					ENST00000287907.2:c.250G>A	p.Val84Ile	p.V84I	ENST00000287907	NM_024012.3	84	Gtc/Atc	0	
CDC123	8872		GRCh37	10	12279169	12279169	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_002																					ENST00000281141.4:c.592T>G	p.Tyr198Asp	p.Y198D	ENST00000281141	NM_006023.2	198	Tac/Gac	0	
CCDC73	493860		GRCh37	11	32636086	32636086	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_002																					ENST00000335185.5:c.1778A>C	p.Lys593Thr	p.K593T	ENST00000335185	NM_001008391.3	593	aAa/aCa	0	
YPEL4	219539		GRCh37	11	57413879	57413879	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			brca_smc_2018_BB01_002																					ENST00000300022.3:c.186-1G>A		p.X62_splice	ENST00000300022	NM_145008.2	62		0	
CAPN1	823		GRCh37	11	64954767	64954767	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_002																					ENST00000279247.6:c.841C>G	p.Gln281Glu	p.Q281E	ENST00000279247	NM_005186.3	281	Cag/Gag	0	
KIF5A	3798		GRCh37	12	57975220	57975220	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_002																					ENST00000455537.2:c.2778C>G	p.His926Gln	p.H926Q	ENST00000455537	NM_004984.2	926	caC/caG	0	
PCDH17	27253		GRCh37	13	58209195	58209195	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_002																					ENST00000377918.3:c.2515C>G	p.Gln839Glu	p.Q839E	ENST00000377918	NM_001040429.2	839	Caa/Gaa	0	
CORO7	79585		GRCh37	16	4445315	4445315	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_002																					ENST00000251166.4:c.590C>G	p.Pro197Arg	p.P197R	ENST00000251166	NM_024535.4	197	cCc/cGc	0	
TUBB3	10381		GRCh37	16	90002030	90002030	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_002																					ENST00000315491.7:c.1171C>T	p.Arg391Cys	p.R391C	ENST00000315491	NM_006086.3	391	Cgc/Tgc	0	
TP53	7157		GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_002																					ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga	0	
HCK	3055		GRCh37	20	30689169	30689169	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_002																					ENST00000534862.1:c.1368G>A	p.Met456Ile	p.M456I	ENST00000534862	NM_001172132.1	456	atG/atA	0	
FAM65C			GRCh37	20	49214196	49214196	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_002																					ENST00000045083.2:c.1699A>G	p.Ile567Val	p.I567V	ENST00000045083	NM_080829.2	567	Atc/Gtc	0	
GRIK3	2899		GRCh37	1	37319270	37319270	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_007																					ENST00000373091.3:c.1158G>T	p.Leu386Phe	p.L386F	ENST00000373091	NM_000831.3	386	ttG/ttT	0	
CENPF	1063		GRCh37	1	214811258	214811258	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_007																					ENST00000366955.3:c.1496C>T	p.Ala499Val	p.A499V	ENST00000366955	NM_016343.3	499	gCc/gTc	0	
TTN	7273		GRCh37	2	179454896	179454896	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_007																					ENST00000591111.1:c.56633G>C	p.Arg18878Pro	p.R18878P	ENST00000591111		18878	cGa/cCa	0	
KIF1A	547		GRCh37	2	241676582	241676582	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_007																					ENST00000320389.7:c.3602G>A	p.Arg1201His	p.R1201H	ENST00000320389	NM_004321.6	1201	cGc/cAc	0	
KLF15	28999		GRCh37	3	126070735	126070735	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_007																					ENST00000296233.3:c.1031G>A	p.Arg344Gln	p.R344Q	ENST00000296233	NM_014079.3	344	cGg/cAg	0	
OR10C1	442194		GRCh37	6	29408323	29408323	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_007																					ENST00000444197.2:c.531C>A	p.Phe177Leu	p.F177L	ENST00000444197	NM_013941.3	177	ttC/ttA	0	
FOXP4	116113		GRCh37	6	41558040	41558040	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_007																					ENST00000307972.4:c.1389C>A	p.Asn463Lys	p.N463K	ENST00000307972		463	aaC/aaA	0	
OGDH	4967		GRCh37	7	44714860	44714860	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_007																					ENST00000222673.5:c.1019C>G	p.Ala340Gly	p.A340G	ENST00000222673	NM_002541.3	340	gCt/gGt	0	
KIAA0196			GRCh37	8	126049553	126049553	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_007																					ENST00000318410.7:c.3107T>C	p.Leu1036Ser	p.L1036S	ENST00000318410	NM_014846.3	1036	tTa/tCa	0	
FOXE1	2304		GRCh37	9	100616632	100616632	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_007																					ENST00000375123.3:c.436C>T	p.Arg146Cys	p.R146C	ENST00000375123	NM_004473.3	146	Cgc/Tgc	0	
UPF2	26019		GRCh37	10	11994086	11994086	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_007																					ENST00000356352.2:c.3013C>T	p.Arg1005Ter	p.R1005*	ENST00000356352		1005	Cga/Tga	0	
SNX19	399979		GRCh37	11	130784226	130784226	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_007																					ENST00000265909.4:c.1609G>A	p.Gly537Ser	p.G537S	ENST00000265909	NM_014758.2	537	Ggc/Agc	0	
WNT1	7471		GRCh37	12	49375113	49375113	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_007																					ENST00000293549.3:c.803G>A	p.Arg268Gln	p.R268Q	ENST00000293549	NM_005430.3	268	cGg/cAg	0	
LRRIQ1	84125		GRCh37	12	85547813	85547813	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_007																					ENST00000393217.2:c.4661C>A	p.Ala1554Asp	p.A1554D	ENST00000393217	NM_001079910.1	1554	gCt/gAt	0	
RP11-650K20.3			GRCh37	12	104235319	104235319	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_007																					ENST00000551650.1:c.52G>A	p.Ala18Thr	p.A18T	ENST00000551650		18	Gca/Aca	0	
NEO1	4756		GRCh37	15	73536819	73536819	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_007																					ENST00000261908.6:c.1586G>C	p.Arg529Pro	p.R529P	ENST00000261908	NM_002499.3	529	cGa/cCa	0	
ZNF689	115509		GRCh37	16	30621259	30621259	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_007																					ENST00000287461.3:c.104C>T	p.Ala35Val	p.A35V	ENST00000287461	NM_138447.2	35	gCc/gTc	0	
CBFB	865		GRCh37	16	67063317	67063317	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_007																					ENST00000290858.6:c.7C>G	p.Arg3Gly	p.R3G	ENST00000290858	NM_001755.2	3	Cgc/Ggc	0	
TP53	7157		GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			brca_smc_2018_BB01_007																					ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126		0	
MYH2	4620		GRCh37	17	10442586	10442586	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_007																					ENST00000245503.5:c.1352A>T	p.Asp451Val	p.D451V	ENST00000245503	NM_017534.5	451	gAc/gTc	0	
NPEPPS	9520		GRCh37	17	45662922	45662922	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_007																					ENST00000322157.4:c.705T>G	p.Phe235Leu	p.F235L	ENST00000322157	NM_006310.3	235	ttT/ttG	0	
SRSF2	6427		GRCh37	17	74732533	74732533	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_007																					ENST00000359995.5:c.376C>T	p.Arg126Cys	p.R126C	ENST00000359995	NM_001195427.1	126	Cgc/Tgc	0	
ZNF844	284391		GRCh37	19	12186153	12186153	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_007																					ENST00000439326.3:c.218A>G	p.Glu73Gly	p.E73G	ENST00000439326	NM_001136501.1	73	gAa/gGa	0	
HELZ2	85441		GRCh37	20	62191881	62191881	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_007																					ENST00000467148.1:c.7451A>G	p.Asp2484Gly	p.D2484G	ENST00000467148	NM_001037335.2	2484	gAc/gGc	0	
KRTAP10-6	386674		GRCh37	21	46012029	46012029	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_007																					ENST00000400368.1:c.337G>A	p.Val113Ile	p.V113I	ENST00000400368	NM_198688.2	113	Gtc/Atc	0	
MIB2	142678		GRCh37	1	1559305	1559305	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_015																					ENST00000505820.2:c.744C>A	p.Tyr248Ter	p.Y248*	ENST00000505820		248	taC/taA	0	
FAM228B	375190		GRCh37	2	24384476	24384476	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_015																					ENST00000420135.2:c.787A>G	p.Ile263Val	p.I263V	ENST00000420135		263	Att/Gtt	0	
SOS1	6654		GRCh37	2	39234311	39234311	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_015																					ENST00000402219.2:c.2534T>C	p.Leu845Ser	p.L845S	ENST00000402219	NM_005633.3	845	tTa/tCa	0	
THSD7B	80731		GRCh37	2	137639801	137639801	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_015																					ENST00000272643.3:c.53G>C	p.Arg18Thr	p.R18T	ENST00000272643		18	aGg/aCg	0	
SLC4A10	57282		GRCh37	2	162813686	162813686	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_015																					ENST00000446997.1:c.2729G>C	p.Arg910Thr	p.R910T	ENST00000446997	NM_001178015.1	910	aGg/aCg	0	
KPNA4	3840		GRCh37	3	160222813	160222813	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_015																					ENST00000334256.4:c.1400A>G	p.Asn467Ser	p.N467S	ENST00000334256	NM_002268.4	467	aAt/aGt	0	
AMBN	258		GRCh37	4	71468521	71468521	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_015																					ENST00000322937.6:c.577G>T	p.Gly193Ter	p.G193*	ENST00000322937	NM_016519.5	193	Gga/Tga	0	
SNCA	6622		GRCh37	4	90756724	90756724	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_015																					ENST00000336904.3:c.95A>G	p.Lys32Arg	p.K32R	ENST00000336904	NM_001146055.1	32	aAg/aGg	0	
GLRB	2743		GRCh37	4	158043481	158043481	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BB01_015																					ENST00000264428.4:c.230-1G>A		p.X77_splice	ENST00000264428	NM_000824.4	77		0	
CDK14	5218		GRCh37	7	90546938	90546938	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_015																					ENST00000380050.3:c.725G>A	p.Arg242Gln	p.R242Q	ENST00000380050	NM_001287137.1	242	cGa/cAa	0	
GPR19	2842		GRCh37	12	12814736	12814736	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_015																					ENST00000332427.2:c.647C>T	p.Ser216Phe	p.S216F	ENST00000332427	NM_006143.2	216	tCc/tTc	0	
RILP	83547		GRCh37	17	1552140	1552140	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_015																					ENST00000301336.6:c.628G>T	p.Glu210Ter	p.E210*	ENST00000301336	NM_031430.2	210	Gaa/Taa	0	
TAB3	257397		GRCh37	X	30877660	30877660	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_015																					ENST00000378933.1:c.46C>T	p.Leu16Phe	p.L16F	ENST00000378933	NM_152787.3	16	Ctt/Ttt	0	
RERE	473		GRCh37	1	8419925	8419925	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_028																					ENST00000337907.3:c.3517G>A	p.Glu1173Lys	p.E1173K	ENST00000337907	NM_012102.3	1173	Gag/Aag	0	
TTN	7273		GRCh37	2	179463247	179463247	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_028																					ENST00000591111.1:c.52174G>C	p.Glu17392Gln	p.E17392Q	ENST00000591111		17392	Gaa/Caa	0	
CELSR3	1951		GRCh37	3	48696731	48696731	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_028																					ENST00000164024.4:c.3337G>T	p.Glu1113Ter	p.E1113*	ENST00000164024	NM_001407.2	1113	Gag/Tag	0	
CELSR3	1951		GRCh37	3	48698816	48698816	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_028																					ENST00000164024.4:c.1252A>T	p.Met418Leu	p.M418L	ENST00000164024	NM_001407.2	418	Atg/Ttg	0	
PIK3CA	5290		GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_028																					ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag	0	
UGT2B10	7365		GRCh37	4	69696354	69696354	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_028																					ENST00000265403.7:c.1344A>T	p.Gln448His	p.Q448H	ENST00000265403	NM_001075.4	448	caA/caT	0	
TULP4	56995		GRCh37	6	158882717	158882717	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_028																					ENST00000367097.3:c.982A>G	p.Asn328Asp	p.N328D	ENST00000367097	NM_020245.4	328	Aat/Gat	0	
MAGI2	9863		GRCh37	7	77975247	77975247	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_028																					ENST00000354212.4:c.1217G>A	p.Gly406Asp	p.G406D	ENST00000354212	NM_012301.3	406	gGt/gAt	0	
KCNV1	27012		GRCh37	8	110984900	110984900	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_028																					ENST00000297404.1:c.578G>A	p.Arg193His	p.R193H	ENST00000297404	NM_014379.2	193	cGc/cAc	0	
IFNE	338376		GRCh37	9	21481418	21481418	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_028																					ENST00000448696.3:c.276C>A	p.Phe92Leu	p.F92L	ENST00000448696	NM_176891.4	92	ttC/ttA	0	
HABP4	22927		GRCh37	9	99228053	99228053	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_028																					ENST00000375249.4:c.736G>C	p.Asp246His	p.D246H	ENST00000375249	NM_014282.2	246	Gat/Cat	0	
PRB2	653247		GRCh37	12	11546348	11546348	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_028																					ENST00000389362.4:c.664C>G	p.Gln222Glu	p.Q222E	ENST00000389362	NM_006248.3	222	Caa/Gaa	0	
PDE1B	5153		GRCh37	12	54968883	54968883	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_028																					ENST00000243052.3:c.1066A>T	p.Ile356Phe	p.I356F	ENST00000243052	NM_000924.3	356	Att/Ttt	0	
CACNA1H	8912		GRCh37	16	1263779	1263779	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BB01_028																					ENST00000348261.5:c.4778-1G>A		p.X1593_splice	ENST00000348261	NM_021098.2	1593		0	
ERBB2	2064		GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_028																					ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg	0	
WDR7	23335		GRCh37	18	54398761	54398761	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_028																					ENST00000254442.3:c.1922A>C	p.Lys641Thr	p.K641T	ENST00000254442	NM_015285.2	641	aAa/aCa	0	
NDUFA11	126328		GRCh37	19	5903626	5903626	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_028																					ENST00000308961.4:c.94G>T	p.Ala32Ser	p.A32S	ENST00000308961	NM_175614.4	32	Gct/Tct	0	
ACTL9	284382		GRCh37	19	8808202	8808202	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_028																					ENST00000324436.3:c.850G>A	p.Asp284Asn	p.D284N	ENST00000324436	NM_178525.3	284	Gat/Aat	0	
ZNF850	342892		GRCh37	19	37238959	37238959	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_028																					ENST00000591344.1:c.2983G>C	p.Glu995Gln	p.E995Q	ENST00000591344	NM_001193552.1	995	Gaa/Caa	0	
TMEM131	23505		GRCh37	2	98460725	98460725	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			brca_smc_2018_BB01_004																					ENST00000186436.5:c.484-1G>A		p.X162_splice	ENST00000186436	NM_015348.1	162		0	
DNAAF1	123872		GRCh37	16	84188289	84188289	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_004																					ENST00000378553.5:c.460C>T	p.Arg154Cys	p.R154C	ENST00000378553	NM_178452.4	154	Cgt/Tgt	0	
TP53	7157		GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_004																					ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt	0	
MATK	4145		GRCh37	19	3778305	3778305	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_004																					ENST00000310132.6:c.1400G>T	p.Arg467Leu	p.R467L	ENST00000310132	NM_139355.2	467	cGc/cTc	0	
BAX	581		GRCh37	19	49459542	49459542	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_004																					ENST00000345358.7:c.321G>A	p.Trp107Ter	p.W107*	ENST00000345358	NM_138764.4	107	tgG/tgA	0	
AGO3	192669		GRCh37	1	36520607	36520607	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_045																					ENST00000373191.4:c.2335G>A	p.Glu779Lys	p.E779K	ENST00000373191	NM_024852.3	779	Gaa/Aaa	0	
UBE2U	148581		GRCh37	1	64671389	64671389	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_045																					ENST00000371076.3:c.134A>G	p.Asn45Ser	p.N45S	ENST00000371076	NM_152489.1	45	aAt/aGt	0	
ITGA10	8515		GRCh37	1	145533797	145533797	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BB01_045																					ENST00000369304.3:c.1444-1G>C		p.X482_splice	ENST00000369304	NM_003637.3	482		0	
RIIAD1	284485		GRCh37	1	151694076	151694076	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_045																					ENST00000479191.1:c.64G>T	p.Glu22Ter	p.E22*	ENST00000479191	NM_001144956.1	22	Gag/Tag	0	
MEX3A	92312		GRCh37	1	156046956	156046956	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_045																					ENST00000532414.2:c.972C>A	p.His324Gln	p.H324Q	ENST00000532414	NM_001093725.1	324	caC/caA	0	
POU2F1	5451		GRCh37	1	167382270	167382270	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_045																					ENST00000541643.3:c.1840T>G	p.Leu614Val	p.L614V	ENST00000541643		614	Tta/Gta	0	
SELL	6402		GRCh37	1	169679659	169679659	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			brca_smc_2018_BB01_045																					ENST00000236147.4:c.43-1G>A		p.X15_splice	ENST00000236147	NM_000655.4	15		0	
HMCN1	83872		GRCh37	1	186037032	186037032	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_045																					ENST00000271588.4:c.7772G>C	p.Ser2591Thr	p.S2591T	ENST00000271588	NM_031935.2	2591	aGc/aCc	0	
FCAMR	83953		GRCh37	1	207133941	207133941	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_045																					ENST00000324852.4:c.1280T>C	p.Ile427Thr	p.I427T	ENST00000324852	NM_001170631.1	427	aTc/aCc	0	
PARP1	142		GRCh37	1	226567297	226567297	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_045																					ENST00000366794.5:c.1589G>T	p.Gly530Val	p.G530V	ENST00000366794	NM_001618.3	530	gGa/gTa	0	
AHCTF1	25909		GRCh37	1	247062752	247062752	+	splice_donor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BB01_045																					ENST00000326225.3:c.1521+1G>C		p.X507_splice	ENST00000326225	NM_015446.4	507		0	
EFR3B	22979		GRCh37	2	25354243	25354243	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_045																					ENST00000403714.3:c.856C>A	p.His286Asn	p.H286N	ENST00000403714	NM_014971.1	286	Cac/Aac	0	
GPR113			GRCh37	2	26533994	26533994	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_045																					ENST00000311519.1:c.2602C>T	p.His868Tyr	p.H868Y	ENST00000311519	NM_001145168.1	868	Cac/Tac	0	
SMEK2			GRCh37	2	55791598	55791598	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_045																					ENST00000345102.5:c.2111G>C	p.Arg704Thr	p.R704T	ENST00000345102	NM_001122964.1	704	aGa/aCa	0	
GLI2	2736		GRCh37	2	121736032	121736032	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_045																					ENST00000361492.4:c.1391A>C	p.His464Pro	p.H464P	ENST00000361492	NM_005270.4	464	cAc/cCc	0	
SCN1A	6323		GRCh37	2	166915101	166915101	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_045																					ENST00000303395.4:c.362C>T	p.Ala121Val	p.A121V	ENST00000303395		121	gCt/gTt	0	
SGOL2			GRCh37	2	201436096	201436096	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_045																					ENST00000357799.4:c.1027G>C	p.Glu343Gln	p.E343Q	ENST00000357799	NM_152524.5	343	Gag/Cag	0	
VIL1	7429		GRCh37	2	219296889	219296889	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_045																					ENST00000248444.5:c.1324C>G	p.Leu442Val	p.L442V	ENST00000248444	NM_007127.2	442	Ctg/Gtg	0	
GAL3ST2	64090		GRCh37	2	242743187	242743187	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_045																					ENST00000192314.6:c.803C>T	p.Thr268Ile	p.T268I	ENST00000192314	NM_022134.2	268	aCc/aTc	0	
PROS1	5627		GRCh37	3	93598082	93598082	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_045																					ENST00000394236.3:c.1569G>C	p.Met523Ile	p.M523I	ENST00000394236	NM_000313.3	523	atG/atC	0	
NIT2	56954		GRCh37	3	100058681	100058681	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_045																					ENST00000394140.4:c.149G>C	p.Gly50Ala	p.G50A	ENST00000394140	NM_020202.4	50	gGa/gCa	0	
IFT122	55764		GRCh37	3	129195318	129195318	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_045																					ENST00000348417.2:c.977C>A	p.Thr326Lys	p.T326K	ENST00000348417	NM_052989.2	326	aCg/aAg	0	
SLITRK3	22865		GRCh37	3	164907964	164907964	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_045																					ENST00000241274.3:c.655C>T	p.His219Tyr	p.H219Y	ENST00000241274	NM_014926.2	219	Cac/Tac	0	
HRG	3273		GRCh37	3	186395571	186395571	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_045																					ENST00000232003.4:c.1477A>T	p.Asn493Tyr	p.N493Y	ENST00000232003	NM_000412.2	493	Aat/Tat	0	
PTPN13	5783		GRCh37	4	87732228	87732228	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_045																					ENST00000411767.2:c.7329G>C	p.Met2443Ile	p.M2443I	ENST00000411767		2443	atG/atC	0	
IL31RA	133396		GRCh37	5	55195743	55195743	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BB01_045																					ENST00000447346.2:c.853-1G>C		p.X285_splice	ENST00000447346	NM_001242636.1	285		0	
ANKRD31	256006		GRCh37	5	74380142	74380142	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_045																					ENST00000274361.3:c.5359C>G	p.Pro1787Ala	p.P1787A	ENST00000274361	NM_001164443.1	1787	Cca/Gca	0	
DMXL1	1657		GRCh37	5	118440882	118440882	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_045																					ENST00000311085.8:c.293A>G	p.Tyr98Cys	p.Y98C	ENST00000311085	NM_005509.4	98	tAt/tGt	0	
WNT8A	7478		GRCh37	5	137426456	137426456	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_045																					ENST00000398754.1:c.750C>G	p.Ile250Met	p.I250M	ENST00000398754	NM_058244.2	250	atC/atG	0	
FBXL4	26235		GRCh37	6	99323527	99323527	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_045																					ENST00000229971.1:c.1466G>A	p.Cys489Tyr	p.C489Y	ENST00000229971	NM_012160.4	489	tGt/tAt	0	
EYA4	2070		GRCh37	6	133783471	133783471	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			brca_smc_2018_BB01_045																					ENST00000367895.5:c.438-2A>T		p.X146_splice	ENST00000367895	NM_004100.4	146		0	
UNC93A	54346		GRCh37	6	167717511	167717511	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_045																					ENST00000230256.3:c.730A>T	p.Thr244Ser	p.T244S	ENST00000230256	NM_018974.3	244	Act/Tct	0	
CCM2	83605		GRCh37	7	45078016	45078016	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_045																					ENST00000258781.6:c.195G>C	p.Lys65Asn	p.K65N	ENST00000258781	NM_031443.3	65	aaG/aaC	0	
IKZF1	10320		GRCh37	7	50467987	50467987	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_045																					ENST00000331340.3:c.1222C>T	p.Arg408Cys	p.R408C	ENST00000331340	NM_006060.4	408	Cgc/Tgc	0	
KIF13B	23303		GRCh37	8	29013354	29013354	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_045																					ENST00000524189.1:c.1424C>T	p.Ser475Leu	p.S475L	ENST00000524189	NM_015254.3	475	tCa/tTa	0	
MATN2	4147		GRCh37	8	99042839	99042839	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_045																					ENST00000254898.5:c.2506G>A	p.Glu836Lys	p.E836K	ENST00000254898	NM_002380.3	836	Gaa/Aaa	0	
POP1	10940		GRCh37	8	99152382	99152382	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_045																					ENST00000349693.3:c.1439A>G	p.His480Arg	p.H480R	ENST00000349693	NM_015029.2	480	cAt/cGt	0	
C9orf84			GRCh37	9	114521074	114521074	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_045																					ENST00000318737.4:c.305C>G	p.Pro102Arg	p.P102R	ENST00000318737	NM_173521.3	102	cCa/cGa	0	
OR1L1	26737		GRCh37	9	125424522	125424522	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_045																					ENST00000373686.1:c.678C>A	p.His226Gln	p.H226Q	ENST00000373686		226	caC/caA	0	
OR1L1	26737		GRCh37	9	125424523	125424523	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_045																					ENST00000373686.1:c.679T>G	p.Phe227Val	p.F227V	ENST00000373686		227	Ttt/Gtt	0	
PRRC2B	84726		GRCh37	9	134305538	134305538	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_045																					ENST00000357304.4:c.7G>C	p.Asp3His	p.D3H	ENST00000357304	NM_013318.3	3	Gat/Cat	0	
EHMT1	79813		GRCh37	9	140611415	140611415	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_045																					ENST00000460843.1:c.423C>G	p.Ser141Arg	p.S141R	ENST00000460843	NM_024757.4	141	agC/agG	0	
FBXO18			GRCh37	10	5979167	5979167	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_045																					ENST00000362091.4:c.3056A>G	p.Gln1019Arg	p.Q1019R	ENST00000362091	NM_001258453.1	1019	cAg/cGg	0	
PARG	8505		GRCh37	10	51124039	51124039	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			brca_smc_2018_BB01_045																					ENST00000402038.3:c.208-2A>G		p.X70_splice	ENST00000402038	NM_003631.2	70		0	
LIPA	3988		GRCh37	10	90974778	90974778	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_045																					ENST00000336233.5:c.1007C>T	p.Pro336Leu	p.P336L	ENST00000336233		336	cCg/cTg	0	
CYP26A1	1592		GRCh37	10	94836424	94836424	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_045																					ENST00000224356.4:c.1123C>T	p.Arg375Trp	p.R375W	ENST00000224356	NM_000783.3	375	Cgg/Tgg	0	
R3HCC1L	27291		GRCh37	10	100003896	100003896	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_045																					ENST00000298999.3:c.2318G>C	p.Arg773Thr	p.R773T	ENST00000298999	NM_014472.4	773	aGa/aCa	0	
MGEA5			GRCh37	10	103557817	103557817	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_045																					ENST00000361464.3:c.1904C>A	p.Thr635Lys	p.T635K	ENST00000361464	NM_012215.3	635	aCa/aAa	0	
TTC40			GRCh37	10	134735701	134735701	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_045																					ENST00000368586.5:c.1513G>A	p.Val505Ile	p.V505I	ENST00000368586	NM_001200049.2	505	Gtc/Atc	0	
UBQLNL	143630		GRCh37	11	5536786	5536786	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_045																					ENST00000380184.1:c.886G>T	p.Ala296Ser	p.A296S	ENST00000380184	NM_145053.4	296	Gct/Tct	0	
ANO5	203859		GRCh37	11	22248984	22248984	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_045																					ENST00000324559.8:c.500G>A	p.Ser167Asn	p.S167N	ENST00000324559	NM_001142649.1	167	aGc/aAc	0	
DGKZ	8525		GRCh37	11	46388950	46388950	+	splice_donor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BB01_045																					ENST00000454345.1:c.837+1G>A		p.X279_splice	ENST00000454345	NM_001105540.1	279		0	
CCND1	595		GRCh37	11	69456224	69456224	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_045																					ENST00000227507.2:c.143T>A	p.Val48Glu	p.V48E	ENST00000227507	NM_053056.2	48	gTg/gAg	0	
FAT3	120114		GRCh37	11	92616478	92616478	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_045																					ENST00000298047.6:c.12856G>T	p.Ala4286Ser	p.A4286S	ENST00000298047		4286	Gcc/Tcc	0	
BACE1	23621		GRCh37	11	117186355	117186355	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_045																					ENST00000313005.6:c.157G>C	p.Glu53Gln	p.E53Q	ENST00000313005	NM_138971.3	53	Gag/Cag	0	
C1S	716		GRCh37	12	7177788	7177788	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_045																					ENST00000328916.3:c.1900G>T	p.Gly634Trp	p.G634W	ENST00000328916	NM_201442.2	634	Ggg/Tgg	0	
MCRS1	10445		GRCh37	12	49958588	49958588	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_045																					ENST00000343810.4:c.379C>T	p.Gln127Ter	p.Q127*	ENST00000343810	NM_006337.4	127	Cag/Tag	0	
KRT76	51350		GRCh37	12	53171020	53171020	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_045																					ENST00000332411.2:c.56G>C	p.Gly19Ala	p.G19A	ENST00000332411	NM_015848.4	19	gGc/gCc	0	
MFSD5	84975		GRCh37	12	53646870	53646870	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_045																					ENST00000329548.4:c.251G>T	p.Gly84Val	p.G84V	ENST00000329548	NM_032889.4	84	gGc/gTc	0	
SP1	6667		GRCh37	12	53777006	53777006	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_045																					ENST00000327443.4:c.1275T>A	p.Phe425Leu	p.F425L	ENST00000327443	NM_138473.2	425	ttT/ttA	0	
OR6C74	254783		GRCh37	12	55641105	55641105	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_045																					ENST00000343870.4:c.34C>T	p.Leu12Phe	p.L12F	ENST00000343870	NM_001005490.1	12	Ctt/Ttt	0	
IL26	55801		GRCh37	12	68618976	68618976	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_045																					ENST00000229134.4:c.316C>G	p.Arg106Gly	p.R106G	ENST00000229134	NM_018402.1	106	Cgc/Ggc	0	
HOMEZ	57594		GRCh37	14	23745099	23745099	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_045																					ENST00000357460.5:c.1338C>A	p.Asn446Lys	p.N446K	ENST00000357460	NM_020834.2	446	aaC/aaA	0	
NID2	22795		GRCh37	14	52534806	52534806	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_045																					ENST00000216286.5:c.304G>A	p.Asp102Asn	p.D102N	ENST00000216286	NM_007361.3	102	Gac/Aac	0	
HIF1A	3091		GRCh37	14	62212436	62212436	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_045																					ENST00000337138.4:c.2230C>G	p.His744Asp	p.H744D	ENST00000337138	NM_001530.3	744	Cat/Gat	0	
CAPN3	825		GRCh37	15	42703167	42703167	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_045																					ENST00000397163.3:c.2349C>G	p.Ile783Met	p.I783M	ENST00000397163	NM_000070.2	783	atC/atG	0	
C2CD4A	145741		GRCh37	15	62359895	62359895	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_045																					ENST00000355522.5:c.83G>A	p.Gly28Glu	p.G28E	ENST00000355522	NM_207322.2	28	gGa/gAa	0	
LACTB	114294		GRCh37	15	63414076	63414076	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_045																					ENST00000261893.4:c.6C>G	p.Tyr2Ter	p.Y2*	ENST00000261893	NM_032857.3	2	taC/taG	0	
NMB	4828		GRCh37	15	85200466	85200466	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_045																					ENST00000360476.3:c.271A>T	p.Ile91Phe	p.I91F	ENST00000360476		91	Atc/Ttc	0	
BLM	641		GRCh37	15	91358339	91358339	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_045																					ENST00000355112.3:c.4084G>C	p.Ala1362Pro	p.A1362P	ENST00000355112	NM_000057.2	1362	Gcc/Ccc	0	
TMEM8A	58986		GRCh37	16	427455	427455	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_045																					ENST00000431232.2:c.430A>T	p.Asn144Tyr	p.N144Y	ENST00000431232	NM_021259.2	144	Aac/Tac	0	
ZNF207	7756		GRCh37	17	30694944	30694944	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_045																					ENST00000321233.6:c.1027C>G	p.Pro343Ala	p.P343A	ENST00000321233	NM_003457.3	343	Cca/Gca	0	
KCNH6	81033		GRCh37	17	61622569	61622569	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_045																					ENST00000583023.1:c.2635T>G	p.Ser879Ala	p.S879A	ENST00000583023	NM_030779.3	879	Tcg/Gcg	0	
MAPK4	5596		GRCh37	18	48255791	48255791	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_045																					ENST00000400384.2:c.1331G>A	p.Arg444His	p.R444H	ENST00000400384	NM_002747.3	444	cGc/cAc	0	
MEX3C	51320		GRCh37	18	48703584	48703584	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_045																					ENST00000406189.3:c.1117G>A	p.Val373Met	p.V373M	ENST00000406189	NM_016626.4	373	Gtg/Atg	0	
ZCCHC2	54877		GRCh37	18	60223447	60223447	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_045																					ENST00000269499.5:c.1325C>G	p.Ser442Ter	p.S442*	ENST00000269499	NM_017742.4	442	tCa/tGa	0	
ABCA7	10347		GRCh37	19	1041970	1041970	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_045																					ENST00000263094.6:c.301C>G	p.Leu101Val	p.L101V	ENST00000263094	NM_019112.3	101	Ctg/Gtg	0	
MUC16	94025		GRCh37	19	9083342	9083342	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_045																					ENST00000397910.4:c.8473G>A	p.Glu2825Lys	p.E2825K	ENST00000397910	NM_024690.2	2825	Gag/Aag	0	
COL5A3	50509		GRCh37	19	10121024	10121024	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_045																					ENST00000264828.3:c.38G>T	p.Gly13Val	p.G13V	ENST00000264828	NM_015719.3	13	gGt/gTt	0	
AKAP8L	26993		GRCh37	19	15512167	15512167	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_045																					ENST00000397410.5:c.610C>A	p.Pro204Thr	p.P204T	ENST00000397410	NM_014371.2	204	Ccc/Acc	0	
FFAR2	2867		GRCh37	19	35941234	35941234	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_045																					ENST00000246549.2:c.618G>A	p.Met206Ile	p.M206I	ENST00000246549	NM_005306.2	206	atG/atA	0	
WDR62	284403		GRCh37	19	36591668	36591668	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_045																					ENST00000270301.7:c.2758G>A	p.Ala920Thr	p.A920T	ENST00000270301		920	Gct/Act	0	
LRFN1	57622		GRCh37	19	39805487	39805487	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_045																					ENST00000248668.4:c.490G>A	p.Val164Met	p.V164M	ENST00000248668	NM_020862.1	164	Gtg/Atg	0	
PRR12	57479		GRCh37	19	50102905	50102905	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_045																					ENST00000418929.2:c.4055G>C	p.Ser1352Thr	p.S1352T	ENST00000418929	NM_020719.1	1352	aGt/aCt	0	
ISOC2	79763		GRCh37	19	55967197	55967197	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_045																					ENST00000425675.2:c.154G>A	p.Glu52Lys	p.E52K	ENST00000425675		52	Gag/Aag	0	
SNRPB	6628		GRCh37	20	2443345	2443345	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_045																					ENST00000438552.2:c.622G>C	p.Gly208Arg	p.G208R	ENST00000438552	NM_198216.1	208	Gga/Cga	0	
RPRD1B	58490		GRCh37	20	36694616	36694616	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_045																					ENST00000373433.4:c.789G>C	p.Gln263His	p.Q263H	ENST00000373433	NM_021215.3	263	caG/caC	0	
ZHX3	23051		GRCh37	20	39831237	39831237	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_045																					ENST00000309060.3:c.2320C>G	p.Gln774Glu	p.Q774E	ENST00000309060		774	Cag/Gag	0	
DIDO1	11083		GRCh37	20	61512104	61512104	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_045																					ENST00000266070.4:c.5204C>T	p.Pro1735Leu	p.P1735L	ENST00000266070	NM_033081.2	1735	cCg/cTg	0	
PCNT	5116		GRCh37	21	47766723	47766723	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_045																					ENST00000359568.5:c.787G>C	p.Glu263Gln	p.E263Q	ENST00000359568	NM_006031.5	263	Gag/Cag	0	
EGFL6	25975		GRCh37	X	13637334	13637334	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_045																					ENST00000361306.1:c.1155A>T	p.Lys385Asn	p.K385N	ENST00000361306	NM_015507.3	385	aaA/aaT	0	
BMX	660		GRCh37	X	15540616	15540616	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_045																					ENST00000342014.6:c.658T>G	p.Ser220Ala	p.S220A	ENST00000342014	NM_001721.6	220	Tca/Gca	0	
CXorf38	159013		GRCh37	X	40496321	40496321	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_045																					ENST00000327877.5:c.559A>G	p.Asn187Asp	p.N187D	ENST00000327877	NM_144970.2	187	Aat/Gat	0	
DOCK11	139818		GRCh37	X	117677550	117677550	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_045																					ENST00000276202.7:c.386T>C	p.Leu129Ser	p.L129S	ENST00000276202	NM_144658.3	129	tTg/tCg	0	
MAGEA12	4111		GRCh37	X	151900114	151900114	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_045																					ENST00000357916.4:c.687G>C	p.Glu229Asp	p.E229D	ENST00000357916	NM_005367.5	229	gaG/gaC	0	
SLC6A17	388662		GRCh37	1	110714768	110714768	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_010																					ENST00000331565.4:c.373C>T	p.Arg125Cys	p.R125C	ENST00000331565	NM_001010898.2	125	Cgc/Tgc	0	
VANGL1	81839		GRCh37	1	116206468	116206468	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_010																					ENST00000310260.3:c.391A>G	p.Ile131Val	p.I131V	ENST00000310260	NM_001172412.1	131	Atc/Gtc	0	
FAM71B	153745		GRCh37	5	156590098	156590098	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_010																					ENST00000302938.4:c.1178C>G	p.Pro393Arg	p.P393R	ENST00000302938	NM_130899.2	393	cCa/cGa	0	
DLGAP2	9228		GRCh37	8	1626507	1626507	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_010																					ENST00000421627.2:c.2176C>T	p.His726Tyr	p.H726Y	ENST00000421627	NM_004745.4	726	Cac/Tac	0	
PIBF1	10464		GRCh37	13	73482816	73482816	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_010																					ENST00000326291.6:c.1636G>A	p.Glu546Lys	p.E546K	ENST00000326291	NM_006346.2	546	Gaa/Aaa	0	
F10	2159		GRCh37	13	113803419	113803419	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_010																					ENST00000375559.3:c.1055C>T	p.Thr352Met	p.T352M	ENST00000375559	NM_000504.3	352	aCg/aTg	0	
UNC79	57578		GRCh37	14	94004342	94004342	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_010																					ENST00000393151.2:c.1130G>T	p.Ser377Ile	p.S377I	ENST00000393151		377	aGt/aTt	0	
IGHV1-8	28472		GRCh37	14	106539185	106539185	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_010																					ENST00000390599.2:c.245A>C	p.Lys82Thr	p.K82T	ENST00000390599		82	aAg/aCg	0	
CCDC33	80125		GRCh37	15	74560743	74560743	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_010																					ENST00000398814.3:c.490G>A	p.Val164Ile	p.V164I	ENST00000398814	NM_025055.4	164	Gtt/Att	0	
NLGN2	57555		GRCh37	17	7317810	7317810	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_010																					ENST00000302926.2:c.656T>C	p.Leu219Pro	p.L219P	ENST00000302926	NM_020795.3	219	cTc/cCc	0	
TP53	7157		GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_010																					ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc	0	
KRT13	3860		GRCh37	17	39659331	39659331	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_010																					ENST00000246635.3:c.755A>G	p.Asn252Ser	p.N252S	ENST00000246635	NM_153490.2	252	aAc/aGc	0	
ABCC3	8714		GRCh37	17	48761337	48761337	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_010																					ENST00000285238.8:c.3982G>A	p.Gly1328Ser	p.G1328S	ENST00000285238	NM_003786.3	1328	Ggc/Agc	0	
FAM210A	125228		GRCh37	18	13681650	13681650	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_010																					ENST00000322247.3:c.427A>G	p.Ile143Val	p.I143V	ENST00000322247	NM_001098801.1	143	Ata/Gta	0	
ZNF574	64763		GRCh37	19	42582988	42582988	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_010																					ENST00000359044.4:c.230A>G	p.Gln77Arg	p.Q77R	ENST00000359044	NM_022752.5	77	cAg/cGg	0	
CXorf57			GRCh37	X	105905247	105905247	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_010																					ENST00000372548.4:c.1981C>T	p.Arg661Ter	p.R661*	ENST00000372548	NM_018015.5	661	Cga/Tga	0	
GCC2	9648		GRCh37	2	109100707	109100707	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_016																					ENST00000309863.6:c.3553G>A	p.Asp1185Asn	p.D1185N	ENST00000309863	NM_181453.3	1185	Gat/Aat	0	
POLR3E	55718		GRCh37	16	22337208	22337208	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_016																					ENST00000299853.5:c.1475C>T	p.Pro492Leu	p.P492L	ENST00000299853	NM_001258033.1	492	cCg/cTg	0	
MPRIP	23164		GRCh37	17	17083361	17083361	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_016																					ENST00000341712.4:c.3004A>T	p.Arg1002Ter	p.R1002*	ENST00000341712		1002	Aga/Tga	0	
TLE2	7089		GRCh37	19	3005812	3005812	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_016																					ENST00000262953.6:c.1655C>T	p.Ala552Val	p.A552V	ENST00000262953	NM_003260.4	552	gCc/gTc	0	
TTC30A	92104		GRCh37	2	178483017	178483017	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_036																					ENST00000355689.5:c.413A>G	p.Gln138Arg	p.Q138R	ENST00000355689	NM_152275.3	138	cAg/cGg	0	
PIK3CA	5290		GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_036																					ENST00000263967.3:c.1625A>T	p.Glu542Val	p.E542V	ENST00000263967	NM_006218.2	542	gAa/gTa	0	
ANKRD17	26057		GRCh37	4	73943080	73943080	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_036																					ENST00000358602.4:c.7579A>G	p.Lys2527Glu	p.K2527E	ENST00000358602	NM_032217.3	2527	Aaa/Gaa	0	
POM121L2	94026		GRCh37	6	27279196	27279196	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_036																					ENST00000444565.1:c.754A>C	p.Lys252Gln	p.K252Q	ENST00000444565	NM_033482.3	252	Aaa/Caa	0	
WTAP	9589		GRCh37	6	160174524	160174524	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_036																					ENST00000358372.4:c.485G>C	p.Arg162Pro	p.R162P	ENST00000358372	NM_004906.4	162	cGa/cCa	0	
CUBN	8029		GRCh37	10	17171751	17171751	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_036																					ENST00000377833.4:c.14C>A	p.Ser5Tyr	p.S5Y	ENST00000377833	NM_001081.3	5	tCt/tAt	0	
MYO3A	53904		GRCh37	10	26377306	26377306	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_036																					ENST00000265944.5:c.1534G>A	p.Glu512Lys	p.E512K	ENST00000265944	NM_017433.4	512	Gaa/Aaa	0	
ENTPD7	57089		GRCh37	10	101460732	101460732	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_036																					ENST00000370489.4:c.1338T>G	p.Asp446Glu	p.D446E	ENST00000370489	NM_020354.3	446	gaT/gaG	0	
ALX4	60529		GRCh37	11	44297028	44297028	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_036																					ENST00000329255.3:c.647G>A	p.Arg216Gln	p.R216Q	ENST00000329255	NM_021926.3	216	cGg/cAg	0	
NUAK1	9891		GRCh37	12	106466569	106466569	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_036																					ENST00000261402.2:c.632C>G	p.Thr211Arg	p.T211R	ENST00000261402	NM_014840.2	211	aCg/aGg	0	
FOXA1	3169		GRCh37	14	38061261	38061261	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_036																					ENST00000250448.2:c.728A>G	p.Tyr243Cys	p.Y243C	ENST00000250448	NM_004496.3	243	tAc/tGc	0	
HSD17B2	3294		GRCh37	16	82132012	82132012	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_036																					ENST00000199936.4:c.1135A>C	p.Met379Leu	p.M379L	ENST00000199936	NM_002153.2	379	Atg/Ctg	0	
GID4	79018		GRCh37	17	17948463	17948463	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_036																					ENST00000268719.4:c.441C>G	p.His147Gln	p.H147Q	ENST00000268719	NM_024052.4	147	caC/caG	0	
DNAJC8	22826		GRCh37	1	28536505	28536505	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_041																					ENST00000263697.4:c.377G>C	p.Gly126Ala	p.G126A	ENST00000263697	NM_014280.2	126	gGa/gCa	0	
SZT2	23334		GRCh37	1	43904697	43904697	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_041																					ENST00000562955.1:c.6554G>C	p.Arg2185Pro	p.R2185P	ENST00000562955	NM_015284.3	2185	cGg/cCg	0	
EPS15	2060		GRCh37	1	51826960	51826960	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_041																					ENST00000371733.3:c.2427C>A	p.Phe809Leu	p.F809L	ENST00000371733	NM_001981.2	809	ttC/ttA	0	
IVNS1ABP	10625		GRCh37	1	185270572	185270572	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_041																					ENST00000367498.3:c.889A>G	p.Thr297Ala	p.T297A	ENST00000367498	NM_006469.4	297	Act/Gct	0	
FCAMR	83953		GRCh37	1	207139177	207139177	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_041																					ENST00000324852.4:c.196A>G	p.Arg66Gly	p.R66G	ENST00000324852	NM_001170631.1	66	Aga/Gga	0	
CR2	1380		GRCh37	1	207658808	207658808	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			brca_smc_2018_BB01_041																					ENST00000367058.3:c.3012-1G>T		p.X1004_splice	ENST00000367058	NM_001877.4	1004		0	
MORN2	729967		GRCh37	2	39108634	39108634	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_041																					ENST00000340556.6:c.52C>G	p.Gln18Glu	p.Q18E	ENST00000340556	NM_001145450.1	18	Caa/Gaa	0	
ACADL	33		GRCh37	2	211068079	211068079	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_041																					ENST00000233710.3:c.960T>G	p.Phe320Leu	p.F320L	ENST00000233710	NM_001608.3	320	ttT/ttG	0	
TRANK1	9881		GRCh37	3	36896818	36896818	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_041																					ENST00000429976.2:c.4263C>A	p.Asp1421Glu	p.D1421E	ENST00000429976		1421	gaC/gaA	0	
EPHA6	285220		GRCh37	3	97198203	97198203	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_041																					ENST00000389672.5:c.2069G>T	p.Gly690Val	p.G690V	ENST00000389672	NM_001080448.2	690	gGg/gTg	0	
CD200R1	131450		GRCh37	3	112643971	112643971	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_041																					ENST00000471858.1:c.770T>C	p.Ile257Thr	p.I257T	ENST00000471858	NM_170780.2	257	aTc/aCc	0	
SLC9A3	6550		GRCh37	5	476467	476467	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_041																					ENST00000264938.3:c.1917G>C	p.Glu639Asp	p.E639D	ENST00000264938	NM_004174.2	639	gaG/gaC	0	
GPR98			GRCh37	5	90074386	90074386	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_041																					ENST00000405460.2:c.12809C>T	p.Ala4270Val	p.A4270V	ENST00000405460	NM_032119.3	4270	gCc/gTc	0	
FER	2241		GRCh37	5	108373142	108373142	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_041																					ENST00000281092.4:c.1676G>A	p.Ser559Asn	p.S559N	ENST00000281092	NM_005246.2	559	aGt/aAt	0	
TRIM41	90933		GRCh37	5	180659818	180659818	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_041																					ENST00000315073.5:c.1069G>T	p.Ala357Ser	p.A357S	ENST00000315073	NM_033549.4	357	Gcc/Tcc	0	
CUL9	23113		GRCh37	6	43181002	43181002	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_041																					ENST00000252050.4:c.5328G>T	p.Met1776Ile	p.M1776I	ENST00000252050	NM_015089.2	1776	atG/atT	0	
SAMD5	389432		GRCh37	6	147830502	147830502	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_041																					ENST00000367474.1:c.438C>G	p.Ser146Arg	p.S146R	ENST00000367474	NM_001030060.2	146	agC/agG	0	
KIAA1324L	222223		GRCh37	7	86567504	86567504	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_041																					ENST00000450689.2:c.1027C>T	p.Arg343Cys	p.R343C	ENST00000450689	NM_001142749.2	343	Cgc/Tgc	0	
LRGUK	136332		GRCh37	7	133876451	133876451	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_041																					ENST00000285928.2:c.1379G>T	p.Arg460Leu	p.R460L	ENST00000285928	NM_144648.1	460	cGa/cTa	0	
PKHD1L1	93035		GRCh37	8	110447514	110447514	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_041																					ENST00000378402.5:c.3436G>T	p.Gly1146Cys	p.G1146C	ENST00000378402	NM_177531.4	1146	Ggt/Tgt	0	
EPPK1	83481		GRCh37	8	144945422	144945422	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_041																					ENST00000525985.1:c.2000C>A	p.Ala667Glu	p.A667E	ENST00000525985	NM_031308.2	667	gCa/gAa	0	
C9orf43	257169		GRCh37	9	116187974	116187974	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_041																					ENST00000288462.4:c.994A>G	p.Lys332Glu	p.K332E	ENST00000288462	NM_152786.2	332	Aaa/Gaa	0	
DCLRE1C	64421		GRCh37	10	14976440	14976440	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_041																					ENST00000378278.2:c.617G>T	p.Cys206Phe	p.C206F	ENST00000378278		206	tGc/tTc	0	
ITGA8	8516		GRCh37	10	15650289	15650289	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_041																					ENST00000378076.3:c.1554C>A	p.Cys518Ter	p.C518*	ENST00000378076	NM_003638.1	518	tgC/tgA	0	
SVIL	6840		GRCh37	10	29811363	29811363	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_041																					ENST00000355867.4:c.3365G>T	p.Ser1122Ile	p.S1122I	ENST00000355867	NM_021738.2	1122	aGc/aTc	0	
WDFY4	57705		GRCh37	10	50174589	50174589	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_041																					ENST00000325239.5:c.8455C>G	p.Pro2819Ala	p.P2819A	ENST00000325239	NM_020945.1	2819	Cca/Gca	0	
FRMD8	83786		GRCh37	11	65161797	65161797	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_041																					ENST00000317568.5:c.482A>G	p.Tyr161Cys	p.Y161C	ENST00000317568	NM_031904.3	161	tAc/tGc	0	
NPAS4	266743		GRCh37	11	66190190	66190190	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_041																					ENST00000311034.2:c.476G>A	p.Arg159His	p.R159H	ENST00000311034	NM_178864.3	159	cGc/cAc	0	
ZNF641	121274		GRCh37	12	48737009	48737009	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_041																					ENST00000301042.3:c.1064A>C	p.Glu355Ala	p.E355A	ENST00000301042	NM_152320.2	355	gAg/gCg	0	
KIF5A	3798		GRCh37	12	57965888	57965888	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_041																					ENST00000455537.2:c.1407G>C	p.Glu469Asp	p.E469D	ENST00000455537	NM_004984.2	469	gaG/gaC	0	
NAV3	89795		GRCh37	12	78444558	78444558	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_041																					ENST00000397909.2:c.2147C>T	p.Thr716Ile	p.T716I	ENST00000397909	NM_001024383.1	716	aCa/aTa	0	
SPESP1	246777		GRCh37	15	69238571	69238571	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_041																					ENST00000310673.3:c.698T>C	p.Ile233Thr	p.I233T	ENST00000310673	NM_145658.3	233	aTt/aCt	0	
DNAH3	55567		GRCh37	16	20976220	20976220	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_041																					ENST00000261383.3:c.8986A>T	p.Thr2996Ser	p.T2996S	ENST00000261383	NM_017539.1	2996	Act/Tct	0	
DNAH3	55567		GRCh37	16	21123383	21123383	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_041																					ENST00000261383.3:c.1851G>C	p.Leu617Phe	p.L617F	ENST00000261383	NM_017539.1	617	ttG/ttC	0	
HAS3	3038		GRCh37	16	69143525	69143525	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_041																					ENST00000306560.1:c.227C>A	p.Ala76Asp	p.A76D	ENST00000306560	NM_005329.2	76	gCc/gAc	0	
CNTNAP4	85445		GRCh37	16	76523669	76523669	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_041																					ENST00000478060.1:c.1750T>A	p.Phe584Ile	p.F584I	ENST00000478060	NM_138994.3	584	Ttc/Atc	0	
TP53	7157		GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_041																					ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt	0	
DNAH9	1770		GRCh37	17	11593650	11593650	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_041																					ENST00000262442.4:c.4511C>G	p.Thr1504Arg	p.T1504R	ENST00000262442	NM_001372.3	1504	aCa/aGa	0	
ALDH3A1	218		GRCh37	17	19643771	19643771	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_041																					ENST00000225740.6:c.827C>A	p.Ala276Asp	p.A276D	ENST00000225740	NM_000691.4	276	gCt/gAt	0	
RPRD1A	55197		GRCh37	18	33573221	33573221	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_041																					ENST00000357384.4:c.832G>C	p.Glu278Gln	p.E278Q	ENST00000357384		278	Gaa/Caa	0	
PARD6G	84552		GRCh37	18	77917707	77917707	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_041																					ENST00000353265.3:c.1078C>G	p.Leu360Val	p.L360V	ENST00000353265	NM_032510.3	360	Ctg/Gtg	0	
RFX1	5989		GRCh37	19	14074005	14074005	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_041																					ENST00000254325.4:c.2653T>G	p.Tyr885Asp	p.Y885D	ENST00000254325	NM_002918.4	885	Tac/Gac	0	
MEF2BNB-MEF2B			GRCh37	19	19297712	19297712	+	intron_variant	Intron	SNP	G	G	A			brca_smc_2018_BB01_041																					ENST00000444486.3:c.-216-4220C>T		p.*72*	ENST00000444486				0	
RBM42	79171		GRCh37	19	36124120	36124120	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_041																					ENST00000262633.4:c.650C>T	p.Pro217Leu	p.P217L	ENST00000262633	NM_024321.3	217	cCg/cTg	0	
RYR1	6261		GRCh37	19	38960085	38960085	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_041																					ENST00000359596.3:c.3697G>C	p.Val1233Leu	p.V1233L	ENST00000359596		1233	Gtc/Ctc	0	
KLK4	9622		GRCh37	19	51411892	51411892	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_041																					ENST00000324041.1:c.418C>T	p.Gln140Ter	p.Q140*	ENST00000324041	NM_004917.3	140	Cag/Tag	0	
KCNK15	60598		GRCh37	20	43379063	43379063	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_041																					ENST00000372861.3:c.577T>G	p.Cys193Gly	p.C193G	ENST00000372861	NM_022358.3	193	Tgc/Ggc	0	
DIDO1	11083		GRCh37	20	61542139	61542139	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_041																					ENST00000266070.4:c.826C>G	p.Pro276Ala	p.P276A	ENST00000266070	NM_033081.2	276	Cct/Gct	0	
SAMSN1	64092		GRCh37	21	15954587	15954587	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_041																					ENST00000285670.2:c.131C>G	p.Pro44Arg	p.P44R	ENST00000285670	NM_001256370.1	44	cCt/cGt	0	
KIF14	9928		GRCh37	1	200528502	200528502	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_022																					ENST00000367350.4:c.4309A>G	p.Lys1437Glu	p.K1437E	ENST00000367350	NM_014875.2	1437	Aaa/Gaa	0	
MAP4	4134		GRCh37	3	47912431	47912431	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_022																					ENST00000360240.6:c.2731G>A	p.Ala911Thr	p.A911T	ENST00000360240	NM_002375.4	911	Gcc/Acc	0	
MUC4	4585		GRCh37	3	195508108	195508108	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_022																					ENST00000463781.3:c.10343C>T	p.Ser3448Leu	p.S3448L	ENST00000463781	NM_018406.6	3448	tCa/tTa	0	
KLHL8	57563		GRCh37	4	88106441	88106441	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_022																					ENST00000273963.5:c.727C>G	p.Gln243Glu	p.Q243E	ENST00000273963	NM_020803.3	243	Cag/Gag	0	
POU2F3	25833		GRCh37	11	120169023	120169023	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_022																					ENST00000543440.2:c.182G>A	p.Arg61Gln	p.R61Q	ENST00000543440	NM_014352.3	61	cGg/cAg	0	
AKAP11	11215		GRCh37	13	42874323	42874323	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_022																					ENST00000025301.2:c.1441C>G	p.His481Asp	p.H481D	ENST00000025301	NM_016248.3	481	Cat/Gat	0	
BAG5	9529		GRCh37	14	104027327	104027327	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_022																					ENST00000299204.4:c.175G>A	p.Glu59Lys	p.E59K	ENST00000299204	NM_001015048.2	59	Gaa/Aaa	0	
TP53	7157		GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_022																					ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc	0	
CDC20	991		GRCh37	1	43825639	43825639	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BB01_009																					ENST00000310955.6:c.428-1G>A		p.X143_splice	ENST00000310955	NM_001255.2	143		0	
NAV1	89796		GRCh37	1	201618257	201618257	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_009																					ENST00000367296.4:c.461C>T	p.Ala154Val	p.A154V	ENST00000367296	NM_020443.4	154	gCg/gTg	0	
USP34	9736		GRCh37	2	61607370	61607370	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_009																					ENST00000398571.2:c.948T>A	p.Asp316Glu	p.D316E	ENST00000398571	NM_014709.3	316	gaT/gaA	0	
PIK3CB	5291		GRCh37	3	138417860	138417860	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_009																					ENST00000289153.2:c.1659T>G	p.Asn553Lys	p.N553K	ENST00000289153	NM_006219.2	553	aaT/aaG	0	
FREM1	158326		GRCh37	9	14805078	14805078	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_009																					ENST00000380880.3:c.3347C>T	p.Pro1116Leu	p.P1116L	ENST00000380880		1116	cCa/cTa	0	
ALDH18A1	5832		GRCh37	10	97376306	97376306	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_009																					ENST00000371224.2:c.1533C>G	p.His511Gln	p.H511Q	ENST00000371224	NM_002860.3	511	caC/caG	0	
FSIP1	161835		GRCh37	15	39910427	39910427	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_009																					ENST00000350221.3:c.1208T>C	p.Leu403Pro	p.L403P	ENST00000350221	NM_152597.4	403	cTc/cCc	0	
COL5A3	50509		GRCh37	19	10097254	10097254	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_009																					ENST00000264828.3:c.2219G>A	p.Gly740Asp	p.G740D	ENST00000264828	NM_015719.3	740	gGc/gAc	0	
CRX	1406		GRCh37	19	48342922	48342922	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_009																					ENST00000221996.7:c.598G>A	p.Ala200Thr	p.A200T	ENST00000221996	NM_000554.4	200	Gct/Act	0	
VRK3	51231		GRCh37	19	50496117	50496117	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_009																					ENST00000316763.3:c.963G>T	p.Gln321His	p.Q321H	ENST00000316763	NM_016440.3	321	caG/caT	0	
KAZN	23254		GRCh37	1	15386769	15386769	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_027																					ENST00000376030.2:c.1018C>G	p.Pro340Ala	p.P340A	ENST00000376030	NM_201628.2	340	Cct/Gct	0	
SPEN	23013		GRCh37	1	16256061	16256061	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_027																					ENST00000375759.3:c.3326C>G	p.Ser1109Ter	p.S1109*	ENST00000375759	NM_015001.2	1109	tCa/tGa	0	
HSPG2	3339		GRCh37	1	22201218	22201218	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_027																					ENST00000374695.3:c.3419G>T	p.Cys1140Phe	p.C1140F	ENST00000374695	NM_005529.5	1140	tGt/tTt	0	
HECTD3	79654		GRCh37	1	45469214	45469214	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_027																					ENST00000372172.4:c.2536G>T	p.Ala846Ser	p.A846S	ENST00000372172	NM_024602.5	846	Gcc/Tcc	0	
SELE	6401		GRCh37	1	169698455	169698455	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_027																					ENST00000333360.7:c.962C>A	p.Pro321His	p.P321H	ENST00000333360	NM_000450.2	321	cCt/cAt	0	
CACNA1E	777		GRCh37	1	181701564	181701564	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_027																					ENST00000367573.2:c.2342G>A	p.Arg781His	p.R781H	ENST00000367573	NM_001205293.1	781	cGt/cAt	0	
KIF26B	55083		GRCh37	1	245849482	245849482	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_027																					ENST00000407071.2:c.3197C>G	p.Pro1066Arg	p.P1066R	ENST00000407071	NM_018012.3	1066	cCc/cGc	0	
RAD51AP2	729475		GRCh37	2	17699178	17699178	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_027																					ENST00000399080.2:c.505G>A	p.Gly169Arg	p.G169R	ENST00000399080	NM_001099218.2	169	Gga/Aga	0	
LRRTM1	347730		GRCh37	2	80530727	80530727	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_027																					ENST00000295057.3:c.218G>A	p.Arg73His	p.R73H	ENST00000295057	NM_178839.4	73	cGc/cAc	0	
TTN	7273		GRCh37	2	179432168	179432168	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_027																					ENST00000591111.1:c.73768G>T	p.Asp24590Tyr	p.D24590Y	ENST00000591111		24590	Gat/Tat	0	
TRAK2	66008		GRCh37	2	202245771	202245771	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_027																					ENST00000332624.3:c.2240A>T	p.Glu747Val	p.E747V	ENST00000332624	NM_015049.2	747	gAg/gTg	0	
ERC2	26059		GRCh37	3	56053047	56053047	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_027																					ENST00000288221.6:c.1654C>G	p.Gln552Glu	p.Q552E	ENST00000288221	NM_015576.1	552	Caa/Gaa	0	
DNAH12	201625		GRCh37	3	57391558	57391558	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_027																					ENST00000351747.2:c.6341C>T	p.Ala2114Val	p.A2114V	ENST00000351747	NM_178504.4	2114	gCg/gTg	0	
GOLGB1	2804		GRCh37	3	121445845	121445845	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_027																					ENST00000340645.5:c.446T>G	p.Ile149Arg	p.I149R	ENST00000340645	NM_001256487.1	149	aTa/aGa	0	
COL6A6	131873		GRCh37	3	130368114	130368114	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_027																					ENST00000358511.6:c.5441G>A	p.Arg1814His	p.R1814H	ENST00000358511	NM_001102608.1	1814	cGc/cAc	0	
CDV3	55573		GRCh37	3	133306777	133306777	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_027																					ENST00000264993.3:c.664C>T	p.His222Tyr	p.H222Y	ENST00000264993	NM_001134422.1	222	Cac/Tac	0	
U2SURP	23350		GRCh37	3	142773837	142773837	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_027																					ENST00000473835.2:c.2827C>T	p.Arg943Ter	p.R943*	ENST00000473835	NM_001080415.1	943	Cga/Tga	0	
TEC	7006		GRCh37	4	48165756	48165756	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_027																					ENST00000381501.3:c.700G>C	p.Val234Leu	p.V234L	ENST00000381501	NM_003215.2	234	Gta/Cta	0	
SLC6A3	6531		GRCh37	5	1441488	1441488	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_027																					ENST00000270349.9:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000270349	NM_001044.4	135	tGc/tAc	0	
SPACA1	81833		GRCh37	6	88769227	88769227	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_027																					ENST00000237201.1:c.531C>G	p.His177Gln	p.H177Q	ENST00000237201	NM_030960.2	177	caC/caG	0	
FUT9	10690		GRCh37	6	96651395	96651395	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_027																					ENST00000302103.5:c.364C>T	p.Gln122Ter	p.Q122*	ENST00000302103	NM_006581.3	122	Cag/Tag	0	
SDK1	221935		GRCh37	7	4050636	4050636	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_027																					ENST00000404826.2:c.2170G>A	p.Glu724Lys	p.E724K	ENST00000404826	NM_152744.3	724	Gag/Aag	0	
ABCA13	154664		GRCh37	7	48314894	48314894	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_027																					ENST00000435803.1:c.5631C>G	p.Ser1877Arg	p.S1877R	ENST00000435803	NM_152701.3	1877	agC/agG	0	
EPPK1	83481		GRCh37	8	144943760	144943760	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_027																					ENST00000525985.1:c.3662C>T	p.Ala1221Val	p.A1221V	ENST00000525985	NM_031308.2	1221	gCc/gTc	0	
PLEC	5339		GRCh37	8	144998291	144998291	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_027																					ENST00000322810.4:c.6217A>G	p.Lys2073Glu	p.K2073E	ENST00000322810	NM_201380.2	2073	Aag/Gag	0	
FAM154A			GRCh37	9	18928351	18928351	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_027																					ENST00000380534.4:c.1124G>A	p.Arg375Gln	p.R375Q	ENST00000380534	NM_153707.2	375	cGg/cAg	0	
GKAP1	80318		GRCh37	9	86354652	86354652	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_027																					ENST00000376371.2:c.1061G>T	p.Arg354Ile	p.R354I	ENST00000376371	NM_025211.3	354	aGa/aTa	0	
KIAA0368			GRCh37	9	114188090	114188090	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_027																					ENST00000338205.5:c.1069T>G	p.Phe357Val	p.F357V	ENST00000338205		357	Ttt/Gtt	0	
ZNF618	114991		GRCh37	9	116811801	116811801	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_027																					ENST00000374126.5:c.2219C>T	p.Thr740Met	p.T740M	ENST00000374126		740	aCg/aTg	0	
TOR4A	54863		GRCh37	9	140173296	140173296	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_027																					ENST00000357503.2:c.155A>T	p.Asp52Val	p.D52V	ENST00000357503	NM_017723.2	52	gAc/gTc	0	
ARMC4	55130		GRCh37	10	28260239	28260239	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_027																					ENST00000305242.5:c.940A>G	p.Ile314Val	p.I314V	ENST00000305242	NM_018076.2	314	Att/Gtt	0	
KIF11	3832		GRCh37	10	94393541	94393541	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_027																					ENST00000260731.3:c.1864C>A	p.Gln622Lys	p.Q622K	ENST00000260731	NM_004523.3	622	Cag/Aag	0	
PDE3B	5140		GRCh37	11	14882794	14882794	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_027																					ENST00000282096.4:c.2768A>C	p.Asn923Thr	p.N923T	ENST00000282096	NM_000922.3	923	aAt/aCt	0	
BIN2	51411		GRCh37	12	51685938	51685938	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_027																					ENST00000267012.4:c.952G>A	p.Glu318Lys	p.E318K	ENST00000267012	NM_016293.2	318	Gag/Aag	0	
TRAV26-2	28656		GRCh37	14	22671205	22671205	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_027																					ENST00000390460.1:c.270G>C	p.Leu90Phe	p.L90F	ENST00000390460		90	ttG/ttC	0	
RTL1	388015		GRCh37	14	101347753	101347753	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_027																					ENST00000534062.1:c.3373C>T	p.Arg1125Ter	p.R1125*	ENST00000534062	NM_001134888.2	1125	Cga/Tga	0	
AHNAK2	113146		GRCh37	14	105415183	105415183	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_027																					ENST00000333244.5:c.6605G>T	p.Ser2202Ile	p.S2202I	ENST00000333244	NM_138420.2	2202	aGc/aTc	0	
AHNAK2	113146		GRCh37	14	105416011	105416011	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_027																					ENST00000333244.5:c.5777C>T	p.Thr1926Ile	p.T1926I	ENST00000333244	NM_138420.2	1926	aCa/aTa	0	
CSNK1G1	53944		GRCh37	15	64496717	64496717	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_027																					ENST00000303052.7:c.922C>T	p.Arg308Trp	p.R308W	ENST00000303052	NM_022048.3	308	Cgg/Tgg	0	
TP53	7157		GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_027																					ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag	0	
MYO1D	4642		GRCh37	17	31039035	31039035	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_027																					ENST00000318217.5:c.2092C>T	p.Leu698Phe	p.L698F	ENST00000318217	NM_015194.1	698	Ctc/Ttc	0	
RASL10B	91608		GRCh37	17	34062267	34062267	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_027																					ENST00000268864.3:c.64C>T	p.Arg22Cys	p.R22C	ENST00000268864	NM_033315.3	22	Cgc/Tgc	0	
CDK12	51755		GRCh37	17	37618395	37618395	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_027																					ENST00000447079.4:c.71C>T	p.Ser24Leu	p.S24L	ENST00000447079	NM_015083.1	24	tCa/tTa	0	
APPBP2	10513		GRCh37	17	58571872	58571872	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_027																					ENST00000083182.3:c.334G>A	p.Asp112Asn	p.D112N	ENST00000083182	NM_006380.2	112	Gat/Aat	0	
ABCA9	10350		GRCh37	17	67047246	67047246	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_027																					ENST00000340001.4:c.22G>A	p.Val8Met	p.V8M	ENST00000340001	NM_080283.3	8	Gtg/Atg	0	
TNRC6C	57690		GRCh37	17	76046174	76046174	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_027																					ENST00000301624.4:c.1031G>T	p.Gly344Val	p.G344V	ENST00000301624	NM_018996.3	344	gGa/gTa	0	
FEM1A	55527		GRCh37	19	4793819	4793819	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_027																					ENST00000269856.3:c.1953G>C	p.Lys651Asn	p.K651N	ENST00000269856	NM_018708.2	651	aaG/aaC	0	
KANK2	25959		GRCh37	19	11303806	11303806	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_027																					ENST00000586659.1:c.950C>A	p.Ala317Asp	p.A317D	ENST00000586659		317	gCc/gAc	0	
ZNF724P			GRCh37	19	23406422	23406422	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_027																					ENST00000418100.1:c.625G>T	p.Val209Leu	p.V209L	ENST00000418100		209	Gtg/Ttg	0	
ZNF235	9310		GRCh37	19	44792533	44792533	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_027																					ENST00000291182.4:c.1055G>A	p.Cys352Tyr	p.C352Y	ENST00000291182	NM_004234.4	352	tGt/tAt	0	
DHX34	9704		GRCh37	19	47879310	47879310	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_027																					ENST00000328771.4:c.2437G>T	p.Ala813Ser	p.A813S	ENST00000328771	NM_014681.5	813	Gcc/Tcc	0	
ENTPD6	955		GRCh37	20	25194011	25194011	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_027																					ENST00000376652.4:c.566C>T	p.Pro189Leu	p.P189L	ENST00000376652		189	cCt/cTt	0	
WFDC2	10406		GRCh37	20	44108735	44108735	+	splice_donor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BB01_027																					ENST00000372676.3:c.*1+1G>A		p.X1_splice	ENST00000372676	NM_006103.3	1		0	
PHACTR3	116154		GRCh37	20	58348418	58348418	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_027																					ENST00000371015.1:c.836C>T	p.Pro279Leu	p.P279L	ENST00000371015	NM_080672.4	279	cCg/cTg	0	
PIK3IP1	113791		GRCh37	22	31686977	31686977	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_027																					ENST00000215912.5:c.281G>T	p.Arg94Leu	p.R94L	ENST00000215912	NM_052880.4	94	cGg/cTg	0	
PHEX	5251		GRCh37	X	22263483	22263483	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_027																					ENST00000379374.4:c.2104C>T	p.Arg702Ter	p.R702*	ENST00000379374	NM_000444.4	702	Cga/Tga	0	
DMD	1756		GRCh37	X	31525408	31525408	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_027																					ENST00000357033.4:c.8380C>G	p.Leu2794Val	p.L2794V	ENST00000357033	NM_004007.2	2794	Ctc/Gtc	0	
HEPH	9843		GRCh37	X	65479980	65479980	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_027																					ENST00000343002.2:c.3075C>A	p.Phe1025Leu	p.F1025L	ENST00000343002		1025	ttC/ttA	0	
POU3F4	5456		GRCh37	X	82764006	82764006	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_027																					ENST00000373200.2:c.674A>C	p.Asn225Thr	p.N225T	ENST00000373200	NM_000307.4	225	aAc/aCc	0	
BHLHB9	80823		GRCh37	X	102004693	102004693	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_027																					ENST00000361229.4:c.770G>A	p.Cys257Tyr	p.C257Y	ENST00000361229	NM_030639.2	257	tGt/tAt	0	
ENOX2	10495		GRCh37	X	129765499	129765499	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_027																					ENST00000338144.3:c.1558C>G	p.Leu520Val	p.L520V	ENST00000338144	NM_182314.1	520	Ctt/Gtt	0	
CXorf66	347487		GRCh37	X	139040342	139040342	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_027																					ENST00000370540.1:c.123G>C	p.Leu41Phe	p.L41F	ENST00000370540	NM_001013403.2	41	ttG/ttC	0	
ZMYM4	9202		GRCh37	1	35852643	35852643	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_034																					ENST00000314607.6:c.1876G>A	p.Val626Met	p.V626M	ENST00000314607	NM_005095.2	626	Gtg/Atg	0	
LRRIQ3	127255		GRCh37	1	74507329	74507329	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_034																					ENST00000354431.4:c.1286A>C	p.Glu429Ala	p.E429A	ENST00000354431	NM_001105659.1	429	gAa/gCa	0	
CSDE1	7812		GRCh37	1	115269709	115269709	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_034																					ENST00000358528.4:c.1359G>C	p.Glu453Asp	p.E453D	ENST00000358528	NM_001007553.2	453	gaG/gaC	0	
ASH1L	55870		GRCh37	1	155448261	155448261	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_034																					ENST00000368346.3:c.4400C>G	p.Pro1467Arg	p.P1467R	ENST00000368346		1467	cCc/cGc	0	
CACNA1S	779		GRCh37	1	201031610	201031610	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_034																					ENST00000362061.3:c.2886G>C	p.Lys962Asn	p.K962N	ENST00000362061	NM_000069.2	962	aaG/aaC	0	
TDRD15	100129278		GRCh37	2	21361641	21361641	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_034																					ENST00000405799.1:c.1302G>C	p.Leu434Phe	p.L434F	ENST00000405799		434	ttG/ttC	0	
DNMT3A	1788		GRCh37	2	25459867	25459867	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_034																					ENST00000264709.3:c.2416G>C	p.Ala806Pro	p.A806P	ENST00000264709	NM_175629.2	806	Gca/Cca	0	
GPR17	2840		GRCh37	2	128409146	128409146	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_034																					ENST00000272644.3:c.921C>G	p.Asn307Lys	p.N307K	ENST00000272644	NM_001161417.1	307	aaC/aaG	0	
LYPD1	116372		GRCh37	2	133403796	133403796	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_034																					ENST00000397463.2:c.248G>A	p.Gly83Glu	p.G83E	ENST00000397463	NM_144586.5	83	gGg/gAg	0	
CXCR4	7852		GRCh37	2	136873409	136873409	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_034																					ENST00000241393.3:c.89G>A	p.Arg30His	p.R30H	ENST00000241393	NM_003467.2	30	cGt/cAt	0	
UBR3	130507		GRCh37	2	170684312	170684312	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_034																					ENST00000272793.5:c.295G>C	p.Ala99Pro	p.A99P	ENST00000272793		99	Gcg/Ccg	0	
TGFBR2	7048		GRCh37	3	30732942	30732942	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_034																					ENST00000295754.5:c.1555G>A	p.Glu519Lys	p.E519K	ENST00000295754	NM_003242.5	519	Gag/Aag	0	
PODXL2	50512		GRCh37	3	127358213	127358213	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_034																					ENST00000342480.6:c.196G>C	p.Glu66Gln	p.E66Q	ENST00000342480	NM_015720.3	66	Gag/Cag	0	
MED12L	116931		GRCh37	3	150834201	150834201	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_034																					ENST00000474524.1:c.176C>G	p.Ala59Gly	p.A59G	ENST00000474524	NM_053002.4	59	gCc/gGc	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_034																					ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt	0	
NFKBIL1	4795		GRCh37	6	31516005	31516005	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_034																					ENST00000376148.4:c.123G>T	p.Leu41Phe	p.L41F	ENST00000376148	NM_005007.3	41	ttG/ttT	0	
ZNF292	23036		GRCh37	6	87965396	87965396	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_034																					ENST00000369577.3:c.2049C>G	p.Cys683Trp	p.C683W	ENST00000369577	NM_015021.1	683	tgC/tgG	0	
SLC13A1	6561		GRCh37	7	122757575	122757575	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_034																					ENST00000194130.2:c.1600C>A	p.Pro534Thr	p.P534T	ENST00000194130	NM_022444.3	534	Cca/Aca	0	
PKHD1L1	93035		GRCh37	8	110460414	110460414	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_034																					ENST00000378402.5:c.5819G>C	p.Gly1940Ala	p.G1940A	ENST00000378402	NM_177531.4	1940	gGc/gCc	0	
TRIM5	85363		GRCh37	11	5686488	5686488	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_034																					ENST00000380034.3:c.1033T>A	p.Cys345Ser	p.C345S	ENST00000380034	NM_033034.2	345	Tgt/Agt	0	
AHNAK	79026		GRCh37	11	62285032	62285032	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_034																					ENST00000378024.4:c.16857C>G	p.Phe5619Leu	p.F5619L	ENST00000378024	NM_001620.2	5619	ttC/ttG	0	
BIRC2	329		GRCh37	11	102248254	102248254	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_034																					ENST00000227758.2:c.1394G>C	p.Arg465Thr	p.R465T	ENST00000227758	NM_001166.4	465	aGa/aCa	0	
KCNA6	3742		GRCh37	12	4919736	4919736	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_034																					ENST00000280684.3:c.529G>A	p.Ala177Thr	p.A177T	ENST00000280684		177	Gcc/Acc	0	
DBX2	440097		GRCh37	12	45429877	45429877	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_034																					ENST00000332700.6:c.424C>G	p.Leu142Val	p.L142V	ENST00000332700	NM_001004329.2	142	Ctg/Gtg	0	
KERA	11081		GRCh37	12	91449730	91449730	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_034																					ENST00000266719.3:c.329A>G	p.Tyr110Cys	p.Y110C	ENST00000266719	NM_007035.3	110	tAc/tGc	0	
HSPH1	10808		GRCh37	13	31725198	31725198	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_034																					ENST00000320027.5:c.794G>A	p.Arg265His	p.R265H	ENST00000320027	NM_006644.2	265	cGt/cAt	0	
N4BP2L2	10443		GRCh37	13	33017211	33017211	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_034																					ENST00000399396.3:c.1463G>A	p.Arg488Lys	p.R488K	ENST00000399396	NM_033111.4	488	aGg/aAg	0	
TRAV40	28641		GRCh37	14	22783314	22783314	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_034																					ENST00000390467.3:c.280G>C	p.Val94Leu	p.V94L	ENST00000390467		94	Gta/Cta	0	
LRRC9	341883		GRCh37	14	60394683	60394683	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_034																					ENST00000445360.1:c.22A>C	p.Asn8His	p.N8H	ENST00000445360		8	Aac/Cac	0	
SYNE2	23224		GRCh37	14	64560145	64560145	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_034																					ENST00000344113.4:c.12055T>G	p.Phe4019Val	p.F4019V	ENST00000344113	NM_015180.4	4019	Ttc/Gtc	0	
ZSCAN10	84891		GRCh37	16	3142208	3142208	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_034																					ENST00000252463.2:c.341C>T	p.Ala114Val	p.A114V	ENST00000252463	NM_032805.1	114	gCg/gTg	0	
TP53	7157		GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_034																					ENST00000269305.4:c.374C>A	p.Thr125Lys	p.T125K	ENST00000269305	NM_001126112.2	125	aCg/aAg	0	
CDK12	51755		GRCh37	17	37618616	37618616	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_034																					ENST00000447079.4:c.292G>A	p.Glu98Lys	p.E98K	ENST00000447079	NM_015083.1	98	Gaa/Aaa	0	
TUBD1	51174		GRCh37	17	57958349	57958349	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_034																					ENST00000325752.3:c.443C>T	p.Ser148Leu	p.S148L	ENST00000325752	NM_016261.3	148	tCa/tTa	0	
TANC2	26115		GRCh37	17	61432600	61432600	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_034																					ENST00000424789.2:c.2209G>C	p.Glu737Gln	p.E737Q	ENST00000424789	NM_025185.3	737	Gaa/Caa	0	
HELZ	9931		GRCh37	17	65134166	65134166	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_034																					ENST00000358691.5:c.2834T>G	p.Leu945Ter	p.L945*	ENST00000358691	NM_014877.3	945	tTa/tGa	0	
FASN	2194		GRCh37	17	80045884	80045884	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_034																					ENST00000306749.2:c.2812C>A	p.Leu938Met	p.L938M	ENST00000306749	NM_004104.4	938	Ctg/Atg	0	
DNM2	1785		GRCh37	19	10886548	10886548	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_034																					ENST00000355667.6:c.555C>G	p.Asp185Glu	p.D185E	ENST00000355667	NM_001005360.2	185	gaC/gaG	0	
RRP1B	23076		GRCh37	21	45104519	45104519	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_034																					ENST00000340648.4:c.977A>C	p.Lys326Thr	p.K326T	ENST00000340648	NM_015056.2	326	aAa/aCa	0	
UPK3A	7380		GRCh37	22	45684944	45684944	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_034																					ENST00000216211.4:c.491T>C	p.Phe164Ser	p.F164S	ENST00000216211	NM_006953.3	164	tTc/tCc	0	
GDPD2	54857		GRCh37	X	69652284	69652284	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_034																					ENST00000374382.3:c.1435C>T	p.Arg479Cys	p.R479C	ENST00000374382	NM_017711.3	479	Cgt/Tgt	0	
ZNF275	10838		GRCh37	X	152612900	152612900	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_034																					ENST00000370251.3:c.757C>T	p.Leu253Phe	p.L253F	ENST00000370251	NM_001080485.3	253	Ctc/Ttc	0	
SF3B4	10262		GRCh37	1	149895518	149895518	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_005																					ENST00000271628.8:c.1191G>T	p.Gln397His	p.Q397H	ENST00000271628	NM_005850.4	397	caG/caT	0	
CD1A	909		GRCh37	1	158225027	158225027	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_005																					ENST00000289429.5:c.212C>T	p.Ser71Phe	p.S71F	ENST00000289429	NM_001763.2	71	tCc/tTc	0	
CAMSAP2	23271		GRCh37	1	200801866	200801866	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_005																					ENST00000236925.4:c.853G>C	p.Asp285His	p.D285H	ENST00000236925		285	Gat/Cat	0	
SMYD5	10322		GRCh37	2	73441486	73441486	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_005																					ENST00000389501.4:c.92C>G	p.Ala31Gly	p.A31G	ENST00000389501	NM_006062.2	31	gCc/gGc	0	
TTN	7273		GRCh37	2	179504433	179504433	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_005																					ENST00000591111.1:c.35946G>C	p.Lys11982Asn	p.K11982N	ENST00000591111		11982	aaG/aaC	0	
FARP2	9855		GRCh37	2	242403380	242403380	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_005																					ENST00000264042.3:c.1878C>A	p.Asn626Lys	p.N626K	ENST00000264042	NM_014808.2	626	aaC/aaA	0	
SETD2	29072		GRCh37	3	47163139	47163139	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_005																					ENST00000409792.3:c.2987C>G	p.Ser996Ter	p.S996*	ENST00000409792	NM_014159.6	996	tCa/tGa	0	
COL6A6	131873		GRCh37	3	130285953	130285953	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_005																					ENST00000358511.6:c.1690C>T	p.His564Tyr	p.H564Y	ENST00000358511	NM_001102608.1	564	Cac/Tac	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_005																					ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt	0	
C4orf17	84103		GRCh37	4	100434294	100434294	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_005																					ENST00000326581.4:c.56T>C	p.Ile19Thr	p.I19T	ENST00000326581	NM_032149.2	19	aTt/aCt	0	
ISL1	3670		GRCh37	5	50680487	50680487	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_005																					ENST00000230658.7:c.141G>T	p.Glu47Asp	p.E47D	ENST00000230658	NM_002202.2	47	gaG/gaT	0	
UHRF1BP1	54887		GRCh37	6	34802634	34802634	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_005																					ENST00000192788.5:c.665G>C	p.Arg222Thr	p.R222T	ENST00000192788	NM_017754.3	222	aGa/aCa	0	
SLC25A27	9481		GRCh37	6	46632516	46632516	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_005																					ENST00000371347.5:c.512G>A	p.Arg171His	p.R171H	ENST00000371347	NM_004277.4	171	cGt/cAt	0	
SCIN	85477		GRCh37	7	12679993	12679993	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_005																					ENST00000297029.5:c.1432G>C	p.Glu478Gln	p.E478Q	ENST00000297029	NM_001112706.2	478	Gag/Cag	0	
GCK	2645		GRCh37	7	44192909	44192909	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_005																					ENST00000403799.3:c.199G>A	p.Glu67Lys	p.E67K	ENST00000403799	NM_000162.3	67	Gaa/Aaa	0	
DMRTA1	63951		GRCh37	9	22451794	22451794	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_005																					ENST00000325870.2:c.1399C>T	p.Arg467Trp	p.R467W	ENST00000325870	NM_022160.2	467	Cgg/Tgg	0	
GOLM1	51280		GRCh37	9	88650342	88650342	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_005																					ENST00000388711.3:c.956A>G	p.Glu319Gly	p.E319G	ENST00000388711	NM_177937.2	319	gAg/gGg	0	
DAPK1	1612		GRCh37	9	90315115	90315115	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_005																					ENST00000358077.5:c.2834G>A	p.Arg945Gln	p.R945Q	ENST00000358077	NM_001288731.1	945	cGa/cAa	0	
BICD2	23299		GRCh37	9	95484988	95484988	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_005																					ENST00000375512.3:c.556G>A	p.Glu186Lys	p.E186K	ENST00000375512	NM_015250.3	186	Gag/Aag	0	
MRC1L1			GRCh37	10	17891606	17891606	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_005																					ENST00000331429.2:c.1087C>T	p.Pro363Ser	p.P363S	ENST00000331429		363	Cct/Tct	0	
C10orf71	118461		GRCh37	10	50534569	50534569	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_005																					ENST00000374144.3:c.3979G>A	p.Ala1327Thr	p.A1327T	ENST00000374144		1327	Gcc/Acc	0	
LTBP3	4054		GRCh37	11	65315182	65315182	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_005																					ENST00000301873.5:c.1957G>A	p.Ala653Thr	p.A653T	ENST00000301873	NM_001130144.2	653	Gcc/Acc	0	
MPHOSPH8	54737		GRCh37	13	20207943	20207943	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_005																					ENST00000361479.5:c.55G>A	p.Asp19Asn	p.D19N	ENST00000361479	NM_017520.3	19	Gac/Aac	0	
MEIS2	4212		GRCh37	15	37390339	37390339	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_005																					ENST00000561208.1:c.74G>A	p.Gly25Glu	p.G25E	ENST00000561208		25	gGa/gAa	0	
MGA	23269		GRCh37	15	41989028	41989028	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_005																					ENST00000219905.7:c.1820C>T	p.Ser607Phe	p.S607F	ENST00000219905	NM_001164273.1	607	tCt/tTt	0	
KARS	3735		GRCh37	16	75665639	75665639	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_005																					ENST00000302445.3:c.1030T>G	p.Tyr344Asp	p.Y344D	ENST00000302445	NM_005548.2	344	Tat/Gat	0	
TP53	7157		GRCh37	17	7579415	7579415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_005																					ENST00000269305.4:c.272G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tGg/tAg	0	
MYO18A	399687		GRCh37	17	27438874	27438874	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_005																					ENST00000527372.1:c.2606C>T	p.Ser869Leu	p.S869L	ENST00000527372	NM_078471.3	869	tCg/tTg	0	
NF1	4763		GRCh37	17	29664577	29664577	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_005																					ENST00000358273.4:c.6619G>T	p.Glu2207Ter	p.E2207*	ENST00000358273	NM_001042492.2	2207	Gaa/Taa	0	
GREB1L	80000		GRCh37	18	19085488	19085488	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_005																					ENST00000424526.1:c.4188G>A	p.Met1396Ile	p.M1396I	ENST00000424526	NM_001142966.1	1396	atG/atA	0	
HAUS1	115106		GRCh37	18	43685309	43685309	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_005																					ENST00000282058.6:c.180G>C	p.Gln60His	p.Q60H	ENST00000282058	NM_138443.3	60	caG/caC	0	
PRRG1	5638		GRCh37	X	37312440	37312440	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_005																					ENST00000378628.4:c.223G>C	p.Gly75Arg	p.G75R	ENST00000378628	NM_001142395.1	75	Gga/Cga	0	
AR	367		GRCh37	X	66765839	66765839	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_005																					ENST00000374690.3:c.851G>A	p.Cys284Tyr	p.C284Y	ENST00000374690	NM_000044.3	284	tGt/tAt	0	
XIAP	331		GRCh37	X	123040931	123040931	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_005																					ENST00000355640.3:c.1394G>T	p.Cys465Phe	p.C465F	ENST00000355640		465	tGt/tTt	0	
CD40LG	959		GRCh37	X	135741392	135741392	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_005																					ENST00000370629.2:c.604G>C	p.Glu202Gln	p.E202Q	ENST00000370629	NM_000074.2	202	Gag/Cag	0	
SCMH1	22955		GRCh37	1	41582635	41582635	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_029																					ENST00000326197.7:c.430C>G	p.Leu144Val	p.L144V	ENST00000326197		144	Cta/Gta	0	
FLG	2312		GRCh37	1	152281882	152281882	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_029																					ENST00000368799.1:c.5480C>T	p.Ser1827Phe	p.S1827F	ENST00000368799	NM_002016.1	1827	tCc/tTc	0	
CD34	947		GRCh37	1	208084403	208084403	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_029																					ENST00000310833.7:c.23G>T	p.Arg8Leu	p.R8L	ENST00000310833	NM_001025109.1	8	cGc/cTc	0	
REG1A	5967		GRCh37	2	79350286	79350286	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_029																					ENST00000233735.1:c.446G>A	p.Trp149Ter	p.W149*	ENST00000233735	NM_002909.4	149	tGg/tAg	0	
FAM171B	165215		GRCh37	2	187627143	187627143	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_029																					ENST00000304698.5:c.2074C>A	p.Leu692Met	p.L692M	ENST00000304698	NM_177454.3	692	Ctg/Atg	0	
ZNF654	55279		GRCh37	3	88188468	88188468	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_029																					ENST00000309495.5:c.8G>A	p.Cys3Tyr	p.C3Y	ENST00000309495	NM_018293.2	3	tGt/tAt	0	
ZNF654	55279		GRCh37	3	88188668	88188668	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_029																					ENST00000309495.5:c.208G>C	p.Glu70Gln	p.E70Q	ENST00000309495	NM_018293.2	70	Gaa/Caa	0	
ZNF654	55279		GRCh37	3	88188719	88188719	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_029																					ENST00000309495.5:c.259G>C	p.Asp87His	p.D87H	ENST00000309495	NM_018293.2	87	Gat/Cat	0	
PIK3CA	5290		GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_029																					ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag	0	
NAAA	27163		GRCh37	4	76857338	76857338	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_029																					ENST00000286733.4:c.422G>A	p.Gly141Asp	p.G141D	ENST00000286733	NM_014435.3	141	gGt/gAt	0	
ZCWPW1	55063		GRCh37	7	100004889	100004889	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_029																					ENST00000398027.2:c.1027G>A	p.Glu343Lys	p.E343K	ENST00000398027	NM_017984.4	343	Gaa/Aaa	0	
XRRA1	143570		GRCh37	11	74647964	74647964	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_029																					ENST00000340360.6:c.244G>T	p.Asp82Tyr	p.D82Y	ENST00000340360	NM_182969.2	82	Gac/Tac	0	
TP53	7157		GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_029																					ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc	0	
ZNF385C	201181		GRCh37	17	40215028	40215028	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_029																					ENST00000436535.3:c.47C>T	p.Pro16Leu	p.P16L	ENST00000436535		16	cCc/cTc	0	
ZNF385C	201181		GRCh37	17	40215029	40215029	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_029																					ENST00000436535.3:c.46C>T	p.Pro16Ser	p.P16S	ENST00000436535		16	Ccc/Tcc	0	
HMOX1	3162		GRCh37	22	35782928	35782928	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_029																					ENST00000216117.8:c.395A>T	p.His132Leu	p.H132L	ENST00000216117	NM_002133.2	132	cAc/cTc	0	
OR10R2	343406		GRCh37	1	158449996	158449996	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_035																					ENST00000368152.1:c.329G>A	p.Arg110Lys	p.R110K	ENST00000368152	NM_001004472.1	110	aGg/aAg	0	
GFPT1	2673		GRCh37	2	69569330	69569330	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_035																					ENST00000357308.4:c.1157G>A	p.Arg386His	p.R386H	ENST00000357308	NM_001244710.1	386	cGt/cAt	0	
ATR	545		GRCh37	3	142261596	142261596	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_035																					ENST00000350721.4:c.3361G>A	p.Asp1121Asn	p.D1121N	ENST00000350721	NM_001184.3	1121	Gat/Aat	0	
PRDM8	56978		GRCh37	4	81124649	81124649	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_035																					ENST00000339711.4:c.2033G>A	p.Arg678His	p.R678H	ENST00000339711	NM_020226.3	678	cGc/cAc	0	
TRRAP	8295		GRCh37	7	98602013	98602013	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_035																					ENST00000359863.4:c.10468A>G	p.Thr3490Ala	p.T3490A	ENST00000359863	NM_001244580.1	3490	Acg/Gcg	0	
STK3	6788		GRCh37	8	99895927	99895927	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_035																					ENST00000523601.1:c.58G>C	p.Val20Leu	p.V20L	ENST00000523601	NM_001256312.1	20	Gtc/Ctc	0	
RAG1	5896		GRCh37	11	36596877	36596877	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_035																					ENST00000299440.5:c.2023C>G	p.Leu675Val	p.L675V	ENST00000299440	NM_000448.2	675	Ctg/Gtg	0	
ACTN4	81		GRCh37	19	39200093	39200093	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_035																					ENST00000252699.2:c.710T>A	p.Ile237Asn	p.I237N	ENST00000252699	NM_004924.4	237	aTc/aAc	0	
ZNF780B	163131		GRCh37	19	40542078	40542078	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_035																					ENST00000434248.1:c.688T>G	p.Phe230Val	p.F230V	ENST00000434248	NM_001005851.2	230	Ttt/Gtt	0	
KIR2DL4	3805		GRCh37	19	55316353	55316353	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_035																					ENST00000345540.5:c.182C>T	p.Thr61Met	p.T61M	ENST00000345540	NM_001080770.1	61	aCg/aTg	0	
ZNFX1	57169		GRCh37	20	47864372	47864372	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_035																					ENST00000371752.1:c.5189T>A	p.Val1730Glu	p.V1730E	ENST00000371752		1730	gTg/gAg	0	
GBE1	2632		GRCh37	3	81635265	81635265	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_013																					ENST00000429644.2:c.1313C>T	p.Ala438Val	p.A438V	ENST00000429644	NM_000158.3	438	gCa/gTa	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_013																					ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt	0	
MTERFD1			GRCh37	8	97263167	97263167	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_013																					ENST00000287025.3:c.644T>G	p.Ile215Ser	p.I215S	ENST00000287025	NM_015942.3	215	aTt/aGt	0	
SGSM2	9905		GRCh37	17	2280321	2280321	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_013																					ENST00000426855.2:c.2626G>A	p.Ala876Thr	p.A876T	ENST00000426855	NM_001098509.1	876	Gcc/Acc	0	
TP53	7157		GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_013																					ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg	0	
NF1	4763		GRCh37	17	29546080	29546080	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_013																					ENST00000358273.4:c.1585C>T	p.Leu529Phe	p.L529F	ENST00000358273	NM_001042492.2	529	Ctc/Ttc	0	
KCNH6	81033		GRCh37	17	61622495	61622495	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_013																					ENST00000583023.1:c.2561C>A	p.Pro854His	p.P854H	ENST00000583023	NM_030779.3	854	cCc/cAc	0	
SCAF1	58506		GRCh37	19	50155519	50155519	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_013																					ENST00000360565.3:c.1873T>C	p.Ser625Pro	p.S625P	ENST00000360565	NM_021228.2	625	Tcg/Ccg	0	
ZNF579	163033		GRCh37	19	56089721	56089721	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_013																					ENST00000325421.4:c.1285C>A	p.Arg429Ser	p.R429S	ENST00000325421	NM_152600.2	429	Cgc/Agc	0	
UBR4	23352		GRCh37	1	19449520	19449520	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_039																					ENST00000375254.3:c.9623G>A	p.Arg3208His	p.R3208H	ENST00000375254	NM_020765.2	3208	cGt/cAt	0	
NME7	29922		GRCh37	1	169292354	169292354	+	splice_donor_variant	Splice_Site	SNP	C	C	A			brca_smc_2018_BB01_039																					ENST00000367811.3:c.278+1G>T		p.X93_splice	ENST00000367811	NM_013330.3	93		0	
SPATS2L	26010		GRCh37	2	201305465	201305465	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_039																					ENST00000358677.5:c.746C>G	p.Ser249Cys	p.S249C	ENST00000358677	NM_015535.2	249	tCc/tGc	0	
TOPBP1	11073		GRCh37	3	133341986	133341986	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_039																					ENST00000260810.5:c.3127A>T	p.Asn1043Tyr	p.N1043Y	ENST00000260810	NM_007027.3	1043	Aat/Tat	0	
PIK3CA	5290		GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_039																					ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA	0	
DRD5	1816		GRCh37	4	9783949	9783949	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_039																					ENST00000304374.2:c.296C>T	p.Ala99Val	p.A99V	ENST00000304374	NM_000798.4	99	gCa/gTa	0	
GRM1	2911		GRCh37	6	146673474	146673474	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_039																					ENST00000282753.1:c.1275G>T	p.Gln425His	p.Q425H	ENST00000282753	NM_001278067.1	425	caG/caT	0	
IGF2R	3482		GRCh37	6	160491016	160491016	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_039																					ENST00000356956.1:c.4369G>C	p.Asp1457His	p.D1457H	ENST00000356956	NM_000876.2	1457	Gat/Cat	0	
PURB	5814		GRCh37	7	44924778	44924778	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_039																					ENST00000395699.2:c.170G>T	p.Arg57Leu	p.R57L	ENST00000395699	NM_033224.3	57	cGc/cTc	0	
ZPBP	11055		GRCh37	7	50132705	50132705	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_039																					ENST00000046087.2:c.86T>C	p.Leu29Pro	p.L29P	ENST00000046087	NM_007009.2	29	cTc/cCc	0	
C7orf62			GRCh37	7	88423662	88423662	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_039																					ENST00000297203.2:c.595A>T	p.Asn199Tyr	p.N199Y	ENST00000297203	NM_152706.3	199	Aac/Tac	0	
TAF2	6873		GRCh37	8	120814063	120814063	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_039																					ENST00000378164.2:c.763G>T	p.Glu255Ter	p.E255*	ENST00000378164	NM_003184.3	255	Gaa/Taa	0	
MUC5B	727897		GRCh37	11	1265872	1265872	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_039																					ENST00000529681.1:c.7762G>A	p.Gly2588Arg	p.G2588R	ENST00000529681	NM_002458.2	2588	Ggg/Agg	0	
VWCE	220001		GRCh37	11	61039154	61039154	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_039																					ENST00000335613.5:c.1778T>C	p.Ile593Thr	p.I593T	ENST00000335613	NM_152718.2	593	aTc/aCc	0	
P2RY6	5031		GRCh37	11	73008044	73008044	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_039																					ENST00000349767.2:c.481C>T	p.Pro161Ser	p.P161S	ENST00000349767	NM_176796.2	161	Ccc/Tcc	0	
LRRK2	120892		GRCh37	12	40651130	40651130	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_039																					ENST00000298910.7:c.1369G>A	p.Glu457Lys	p.E457K	ENST00000298910	NM_198578.3	457	Gaa/Aaa	0	
GPD1	2819		GRCh37	12	50500665	50500665	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_039																					ENST00000301149.3:c.577G>A	p.Glu193Lys	p.E193K	ENST00000301149	NM_001257199.1	193	Gag/Aag	0	
SUGT1	10910		GRCh37	13	53241004	53241004	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_039																					ENST00000343788.6:c.673C>G	p.Leu225Val	p.L225V	ENST00000343788	NM_001130912.1	225	Ctt/Gtt	0	
MCF2L	23263		GRCh37	13	113669099	113669099	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_039																					ENST00000375608.3:c.192C>G	p.Ile64Met	p.I64M	ENST00000375608		64	atC/atG	0	
LTBP2	4053		GRCh37	14	74983537	74983537	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_039																					ENST00000261978.4:c.2896G>A	p.Gly966Arg	p.G966R	ENST00000261978	NM_000428.2	966	Gga/Aga	0	
BCMO1			GRCh37	16	81298320	81298320	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_039																					ENST00000258168.2:c.547A>G	p.Asn183Asp	p.N183D	ENST00000258168	NM_017429.2	183	Aac/Gac	0	
OR1D2	4991		GRCh37	17	2995657	2995657	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_039																					ENST00000331459.1:c.634G>A	p.Gly212Arg	p.G212R	ENST00000331459	NM_002548.2	212	Gga/Aga	0	
TP53	7157		GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_039																					ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc	0	
TMEM91	641649		GRCh37	19	41884291	41884291	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_039																					ENST00000392002.2:c.77C>T	p.Pro26Leu	p.P26L	ENST00000392002	NM_001098821.1	26	cCt/cTt	0	
IGLV3-12	28802		GRCh37	22	23114903	23114903	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_039																					ENST00000390313.2:c.175G>A	p.Gly59Ser	p.G59S	ENST00000390313		59	Ggc/Agc	0	
KCTD17	79734		GRCh37	22	37456951	37456951	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_039																					ENST00000403888.3:c.722C>A	p.Ala241Glu	p.A241E	ENST00000403888	NM_001282684.1	241	gCa/gAa	0	
KLHL4	56062		GRCh37	X	86888849	86888849	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_039																					ENST00000373119.4:c.1650G>A	p.Trp550Ter	p.W550*	ENST00000373119	NM_019117.4	550	tgG/tgA	0	
DHRS3	9249		GRCh37	1	12638754	12638754	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000376223.2:c.690G>A	p.Met230Ile	p.M230I	ENST00000376223	NM_004753.4	230	atG/atA	0	
DPYD	1806		GRCh37	1	98058805	98058805	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000370192.3:c.1097G>A	p.Gly366Asp	p.G366D	ENST00000370192	NM_000110.3	366	gGc/gAc	0	
LPPR4			GRCh37	1	99772156	99772156	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000370185.3:c.1882G>C	p.Glu628Gln	p.E628Q	ENST00000370185	NM_014839.4	628	Gag/Cag	0	
CHIA	27159		GRCh37	1	111854815	111854815	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000343320.6:c.59C>T	p.Ser20Phe	p.S20F	ENST00000343320		20	tCt/tTt	0	
TDRKH	11022		GRCh37	1	151747576	151747576	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000368822.1:c.1501G>A	p.Glu501Lys	p.E501K	ENST00000368822		501	Gaa/Aaa	0	
TCHH	7062		GRCh37	1	152082200	152082200	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_047																					ENST00000368804.1:c.3493G>C	p.Glu1165Gln	p.E1165Q	ENST00000368804	NM_007113.3	1165	Gag/Cag	0	
FLG	2312		GRCh37	1	152280620	152280620	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_047																					ENST00000368799.1:c.6742G>T	p.Asp2248Tyr	p.D2248Y	ENST00000368799	NM_002016.1	2248	Gac/Tac	0	
FLG	2312		GRCh37	1	152287821	152287821	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_047																					ENST00000368799.1:c.112G>T	p.Glu38Ter	p.E38*	ENST00000368799	NM_002016.1	38	Gaa/Taa	0	
UBAP2L	9898		GRCh37	1	154221779	154221779	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000361546.2:c.1079C>T	p.Ser360Phe	p.S360F	ENST00000361546		360	tCc/tTc	0	
GON4L	54856		GRCh37	1	155735059	155735059	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000368331.1:c.4205C>T	p.Ser1402Leu	p.S1402L	ENST00000368331	NM_001037533.1	1402	tCa/tTa	0	
BCAN	63827		GRCh37	1	156628819	156628819	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000329117.5:c.2629G>A	p.Ala877Thr	p.A877T	ENST00000329117	NM_021948.4	877	Gcc/Acc	0	
DNM3	26052		GRCh37	1	171958267	171958267	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000355305.5:c.568G>C	p.Ala190Pro	p.A190P	ENST00000355305		190	Gct/Cct	0	
RC3H1	149041		GRCh37	1	173930313	173930313	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000258349.4:c.2272C>T	p.Arg758Ter	p.R758*	ENST00000258349	NM_172071.2	758	Cga/Tga	0	
USH2A	7399		GRCh37	1	216166443	216166443	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000307340.3:c.6724G>A	p.Glu2242Lys	p.E2242K	ENST00000307340	NM_206933.2	2242	Gaa/Aaa	0	
ESRRG	2104		GRCh37	1	216737732	216737732	+	intron_variant	Intron	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000408911.3:c.701-10G>A		p.*234*	ENST00000408911	NM_001438.3			0	
RYR2	6262		GRCh37	1	237787157	237787157	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000366574.2:c.6009G>C	p.Leu2003Phe	p.L2003F	ENST00000366574	NM_001035.2	2003	ttG/ttC	0	
OR2M2	391194		GRCh37	1	248344098	248344098	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_047																					ENST00000359682.2:c.811G>T	p.Asp271Tyr	p.D271Y	ENST00000359682	NM_001004688.1	271	Gac/Tac	0	
TDRD15	100129278		GRCh37	2	21363757	21363757	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_047																					ENST00000405799.1:c.3418C>A	p.His1140Asn	p.H1140N	ENST00000405799		1140	Cat/Aat	0	
BIRC6	57448		GRCh37	2	32730176	32730176	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_047																					ENST00000421745.2:c.9604C>A	p.Leu3202Ile	p.L3202I	ENST00000421745	NM_016252.3	3202	Ctt/Att	0	
CRIM1	51232		GRCh37	2	36583649	36583649	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000280527.2:c.214G>A	p.Glu72Lys	p.E72K	ENST00000280527	NM_016441.2	72	Gag/Aag	0	
MPHOSPH10	10199		GRCh37	2	71377056	71377056	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000244230.2:c.1957C>T	p.Gln653Ter	p.Q653*	ENST00000244230	NM_005791.2	653	Caa/Taa	0	
TMEM131	23505		GRCh37	2	98435115	98435115	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000186436.5:c.1144G>A	p.Glu382Lys	p.E382K	ENST00000186436	NM_015348.1	382	Gaa/Aaa	0	
CKAP2L	150468		GRCh37	2	113514160	113514160	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000302450.6:c.788G>A	p.Arg263Lys	p.R263K	ENST00000302450	NM_152515.3	263	aGa/aAa	0	
CNTNAP5	129684		GRCh37	2	125367443	125367443	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000431078.1:c.1819G>A	p.Asp607Asn	p.D607N	ENST00000431078	NM_130773.3	607	Gac/Aac	0	
LRP1B	53353		GRCh37	2	141473549	141473549	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_047																					ENST00000389484.3:c.6016G>C	p.Glu2006Gln	p.E2006Q	ENST00000389484	NM_018557.2	2006	Gag/Cag	0	
HOXD10	3236		GRCh37	2	176983879	176983879	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_047																					ENST00000249501.4:c.943C>G	p.Gln315Glu	p.Q315E	ENST00000249501	NM_002148.3	315	Caa/Gaa	0	
TTN	7273		GRCh37	2	179574449	179574449	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_047																					ENST00000591111.1:c.27646G>C	p.Glu9216Gln	p.E9216Q	ENST00000591111		9216	Gag/Cag	0	
TYW5	129450		GRCh37	2	200797797	200797797	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000354611.4:c.941C>G	p.Ser314Cys	p.S314C	ENST00000354611	NM_001039693.2	314	tCt/tGt	0	
DUSP28	285193		GRCh37	2	241500762	241500762	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_047																					ENST00000343217.2:c.409C>A	p.Arg137Ser	p.R137S	ENST00000343217	NM_001033575.1	137	Cgc/Agc	0	
KIF15	56992		GRCh37	3	44815889	44815889	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000326047.4:c.22G>A	p.Glu8Lys	p.E8K	ENST00000326047	NM_020242.2	8	Gag/Aag	0	
NBEAL2	23218		GRCh37	3	47042572	47042572	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000450053.3:c.4387G>A	p.Glu1463Lys	p.E1463K	ENST00000450053	NM_015175.2	1463	Gag/Aag	0	
RAD54L2	23132		GRCh37	3	51696832	51696832	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000409535.2:c.3800C>T	p.Ser1267Leu	p.S1267L	ENST00000409535	NM_015106.2	1267	tCa/tTa	0	
HEG1	57493		GRCh37	3	124739711	124739711	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000311127.4:c.1177G>A	p.Asp393Asn	p.D393N	ENST00000311127	NM_020733.1	393	Gat/Aat	0	
PODXL2	50512		GRCh37	3	127379889	127379889	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000342480.6:c.1018G>C	p.Asp340His	p.D340H	ENST00000342480	NM_015720.3	340	Gac/Cac	0	
CEP63	80254		GRCh37	3	134264524	134264524	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_047																					ENST00000337090.3:c.652G>T	p.Asp218Tyr	p.D218Y	ENST00000337090		218	Gac/Tac	0	
PPP2R3A	5523		GRCh37	3	135863892	135863892	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000264977.3:c.3337G>C	p.Asp1113His	p.D1113H	ENST00000264977	NM_001190447.1	1113	Gat/Cat	0	
PIK3CA	5290		GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag	0	
HRG	3273		GRCh37	3	186389507	186389507	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000232003.4:c.487G>C	p.Glu163Gln	p.E163Q	ENST00000232003	NM_000412.2	163	Gag/Cag	0	
RFC4	5984		GRCh37	3	186510615	186510615	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000296273.2:c.532C>T	p.Leu178Phe	p.L178F	ENST00000296273	NM_002916.3	178	Ctt/Ttt	0	
RTP4	64108		GRCh37	3	187089063	187089063	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000259030.2:c.643G>C	p.Glu215Gln	p.E215Q	ENST00000259030	NM_022147.2	215	Gag/Cag	0	
WDR53	348793		GRCh37	3	196281284	196281284	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_047																					ENST00000332629.5:c.875G>C	p.Arg292Thr	p.R292T	ENST00000332629	NM_182627.1	292	aGa/aCa	0	
ADH1C	126		GRCh37	4	100264133	100264133	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000515683.1:c.647G>A	p.Gly216Glu	p.G216E	ENST00000515683	NM_000669.3	216	gGa/gAa	0	
CYP2U1	113612		GRCh37	4	108866563	108866563	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000332884.6:c.928G>C	p.Asp310His	p.D310H	ENST00000332884	NM_183075.2	310	Gat/Cat	0	
CDH9	1007		GRCh37	5	26988343	26988343	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000231021.4:c.98C>T	p.Ser33Leu	p.S33L	ENST00000231021	NM_016279.3	33	tCa/tTa	0	
MAP1B	4131		GRCh37	5	71494982	71494982	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000296755.7:c.5800G>A	p.Glu1934Lys	p.E1934K	ENST00000296755	NM_005909.3	1934	Gaa/Aaa	0	
MSH3	4437		GRCh37	5	79966126	79966126	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000265081.6:c.790G>A	p.Glu264Lys	p.E264K	ENST00000265081	NM_002439.4	264	Gag/Aag	0	
SNCAIP	9627		GRCh37	5	121758693	121758693	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000261368.8:c.261G>C	p.Glu87Asp	p.E87D	ENST00000261368	NM_005460.2	87	gaG/gaC	0	
SOWAHA	134548		GRCh37	5	132150644	132150644	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000378693.2:c.1331G>A	p.Arg444Gln	p.R444Q	ENST00000378693	NM_175873.4	444	cGa/cAa	0	
PCDHB6	56130		GRCh37	5	140530790	140530790	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000231136.1:c.952G>C	p.Glu318Gln	p.E318Q	ENST00000231136	NM_018939.2	318	Gag/Cag	0	
SPINK5	11005		GRCh37	5	147505367	147505367	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000256084.7:c.2821G>A	p.Asp941Asn	p.D941N	ENST00000256084	NM_006846.3	941	Gat/Aat	0	
SLIT3	6586		GRCh37	5	168100337	168100337	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000519560.1:c.3687-1G>A		p.X1229_splice	ENST00000519560	NM_003062.3	1229		0	
DOCK2	1794		GRCh37	5	169081470	169081470	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000256935.8:c.107G>A	p.Arg36Gln	p.R36Q	ENST00000256935	NM_004946.2	36	cGa/cAa	0	
ZNF354C	30832		GRCh37	5	178506308	178506308	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000315475.6:c.875G>C	p.Arg292Thr	p.R292T	ENST00000315475	NM_014594.1	292	aGa/aCa	0	
BTNL9	153579		GRCh37	5	180474983	180474983	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000327705.9:c.166G>A	p.Glu56Lys	p.E56K	ENST00000327705	NM_152547.4	56	Gag/Aag	0	
DSP	1832		GRCh37	6	7584675	7584675	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_047																					ENST00000379802.3:c.7180A>T	p.Arg2394Trp	p.R2394W	ENST00000379802	NM_004415.2	2394	Agg/Tgg	0	
C2	717		GRCh37	6	31905129	31905129	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000299367.5:c.1022C>T	p.Ala341Val	p.A341V	ENST00000299367	NM_000063.4	341	gCg/gTg	0	
TRERF1	55809		GRCh37	6	42204143	42204143	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000372922.4:c.2866G>A	p.Glu956Lys	p.E956K	ENST00000372922	NM_033502.2	956	Gaa/Aaa	0	
GLTSCR1L			GRCh37	6	42832501	42832501	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_047																					ENST00000314073.5:c.2557C>G	p.Leu853Val	p.L853V	ENST00000314073		853	Ctg/Gtg	0	
PKHD1	5314		GRCh37	6	51889609	51889609	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000371117.3:c.4999G>A	p.Asp1667Asn	p.D1667N	ENST00000371117	NM_138694.3	1667	Gat/Aat	0	
RIMS1	22999		GRCh37	6	72945409	72945409	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_047																					ENST00000521978.1:c.1835C>G	p.Ser612Ter	p.S612*	ENST00000521978	NM_014989.5	612	tCa/tGa	0	
TBC1D32	221322		GRCh37	6	121624836	121624836	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000398212.2:c.1007C>T	p.Ser336Leu	p.S336L	ENST00000398212	NM_152730.4	336	tCa/tTa	0	
CLVS2	134829		GRCh37	6	123319097	123319097	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_047																					ENST00000275162.5:c.175C>G	p.Arg59Gly	p.R59G	ENST00000275162	NM_001010852.3	59	Cgg/Ggg	0	
SOGA3	387104		GRCh37	6	127837116	127837116	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000481848.2:c.644C>T	p.Ser215Phe	p.S215F	ENST00000481848		215	tCc/tTc	0	
ALDH8A1	64577		GRCh37	6	135271168	135271168	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_047																					ENST00000265605.2:c.24G>C	p.Leu8Phe	p.L8F	ENST00000265605	NM_022568.3	8	ttG/ttC	0	
ZNF713	349075		GRCh37	7	56007122	56007122	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_047																					ENST00000429591.2:c.716A>G	p.Asp239Gly	p.D239G	ENST00000429591	NM_182633.1	239	gAt/gGt	0	
TFPI2	7980		GRCh37	7	93516176	93516176	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000222543.5:c.664C>T	p.Arg222Cys	p.R222C	ENST00000222543	NM_001271004.1	222	Cgc/Tgc	0	
PPP1R3A	5506		GRCh37	7	113519315	113519315	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000284601.3:c.1832G>A	p.Gly611Glu	p.G611E	ENST00000284601	NM_002711.3	611	gGa/gAa	0	
CTTNBP2	83992		GRCh37	7	117431712	117431712	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000160373.3:c.1538C>T	p.Pro513Leu	p.P513L	ENST00000160373	NM_033427.2	513	cCc/cTc	0	
PRDM14	63978		GRCh37	8	70981738	70981738	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000276594.2:c.358G>A	p.Glu120Lys	p.E120K	ENST00000276594	NM_024504.3	120	Gag/Aag	0	
SNX16	64089		GRCh37	8	82715454	82715454	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000345957.4:c.691G>A	p.Glu231Lys	p.E231K	ENST00000345957	NM_152836.2	231	Gaa/Aaa	0	
KIAA1429			GRCh37	8	95531480	95531480	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000297591.5:c.2246C>G	p.Ser749Cys	p.S749C	ENST00000297591	NM_015496.4	749	tCt/tGt	0	
ZFPM2	23414		GRCh37	8	106814788	106814788	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_047																					ENST00000407775.2:c.2478G>T	p.Met826Ile	p.M826I	ENST00000407775	NM_012082.3	826	atG/atT	0	
ZFAND5	7763		GRCh37	9	74975688	74975688	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000237937.3:c.7C>G	p.Gln3Glu	p.Q3E	ENST00000237937	NM_006007.3	3	Cag/Gag	0	
QSOX2	169714		GRCh37	9	139113650	139113650	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_047																					ENST00000358701.5:c.813G>C	p.Leu271Phe	p.L271F	ENST00000358701	NM_181701.3	271	ttG/ttC	0	
C10orf126	283080		GRCh37	10	29137266	29137266	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_047																					ENST00000375520.1:c.145C>G	p.Leu49Val	p.L49V	ENST00000375520	NM_001278522.1	49	Ctt/Gtt	0	
GRID1	2894		GRCh37	10	87484119	87484119	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000327946.7:c.1848C>G	p.Phe616Leu	p.F616L	ENST00000327946	NM_017551.2	616	ttC/ttG	0	
LIPF	8513		GRCh37	10	90433471	90433471	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000238983.4:c.796G>A	p.Asp266Asn	p.D266N	ENST00000238983	NM_004190.3	266	Gac/Aac	0	
SLC16A12	387700		GRCh37	10	91195946	91195946	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_047																					ENST00000341233.4:c.1069G>C	p.Asp357His	p.D357H	ENST00000341233	NM_213606.3	357	Gat/Cat	0	
LCOR	84458		GRCh37	10	98708924	98708924	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000356016.3:c.110C>T	p.Ser37Phe	p.S37F	ENST00000356016	NM_032440.3	37	tCt/tTt	0	
DCLRE1A	9937		GRCh37	10	115609082	115609082	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_047																					ENST00000361384.2:c.1782G>C	p.Lys594Asn	p.K594N	ENST00000361384	NM_014881.4	594	aaG/aaC	0	
OR52B6	340980		GRCh37	11	5602701	5602701	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000345043.2:c.595G>A	p.Glu199Lys	p.E199K	ENST00000345043	NM_001005162.2	199	Gag/Aag	0	
LUZP2	338645		GRCh37	11	24784806	24784806	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000336930.6:c.348G>C	p.Lys116Asn	p.K116N	ENST00000336930		116	aaG/aaC	0	
MADD	8567		GRCh37	11	47300602	47300602	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000311027.5:c.1262C>T	p.Ser421Leu	p.S421L	ENST00000311027	NM_003682.3	421	tCa/tTa	0	
SCGB1D1	10648		GRCh37	11	61959560	61959560	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000306238.3:c.88G>C	p.Glu30Gln	p.E30Q	ENST00000306238	NM_006552.1	30	Gaa/Caa	0	
AP5B1	91056		GRCh37	11	65547054	65547054	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_047																					ENST00000532090.2:c.910C>A	p.Pro304Thr	p.P304T	ENST00000532090	NM_138368.4	304	Cca/Aca	0	
SF3B2	10992		GRCh37	11	65827286	65827286	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000322535.6:c.1435G>A	p.Asp479Asn	p.D479N	ENST00000322535	NM_006842.2	479	Gat/Aat	0	
GRIN2B	2904		GRCh37	12	13828771	13828771	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000609686.1:c.1033G>A	p.Glu345Lys	p.E345K	ENST00000609686	NM_000834.3	345	Gag/Aag	0	
OVCH1	341350		GRCh37	12	29604468	29604468	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_047																					ENST00000318184.5:c.2565A>T	p.Arg855Ser	p.R855S	ENST00000318184	NM_183378.2	855	agA/agT	0	
IPO8	10526		GRCh37	12	30816587	30816587	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000256079.4:c.1430C>G	p.Ser477Cys	p.S477C	ENST00000256079	NM_006390.3	477	tCt/tGt	0	
CNTN1	1272		GRCh37	12	41387069	41387069	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000347616.1:c.2111C>T	p.Ala704Val	p.A704V	ENST00000347616		704	gCt/gTt	0	
DBX2	440097		GRCh37	12	45410256	45410256	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000332700.6:c.833C>T	p.Ser278Leu	p.S278L	ENST00000332700	NM_001004329.2	278	tCa/tTa	0	
AGAP2	116986		GRCh37	12	58120511	58120511	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000547588.1:c.3403G>A	p.Gly1135Arg	p.G1135R	ENST00000547588	NM_001122772.2	1135	Gga/Aga	0	
OSBPL8	114882		GRCh37	12	76784301	76784301	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000261183.3:c.1066G>A	p.Asp356Asn	p.D356N	ENST00000261183	NM_020841.4	356	Gat/Aat	0	
KIAA1033			GRCh37	12	105558029	105558029	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_047																					ENST00000332180.5:c.3298G>T	p.Glu1100Ter	p.E1100*	ENST00000332180	NM_015275.1	1100	Gaa/Taa	0	
CUX2	23316		GRCh37	12	111785683	111785683	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000261726.6:c.4015G>A	p.Asp1339Asn	p.D1339N	ENST00000261726	NM_015267.3	1339	Gat/Aat	0	
GPC6	10082		GRCh37	13	95055328	95055328	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000377047.4:c.1525G>C	p.Glu509Gln	p.E509Q	ENST00000377047	NM_005708.3	509	Gag/Cag	0	
TRAV34	28648		GRCh37	14	22675911	22675911	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000390461.2:c.223G>A	p.Glu75Lys	p.E75K	ENST00000390461		75	Gag/Aag	0	
LRFN5	145581		GRCh37	14	42360908	42360908	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000298119.4:c.1841C>T	p.Ser614Leu	p.S614L	ENST00000298119	NM_152447.3	614	tCa/tTa	0	
STON2	85439		GRCh37	14	81744442	81744442	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000267540.2:c.1213G>A	p.Asp405Asn	p.D405N	ENST00000267540	NM_033104.3	405	Gac/Aac	0	
GABRA5	2558		GRCh37	15	27193196	27193196	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000335625.5:c.1205C>T	p.Ser402Leu	p.S402L	ENST00000335625	NM_000810.3	402	tCa/tTa	0	
ARHGAP11A	9824		GRCh37	15	32915739	32915739	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000361627.3:c.247G>A	p.Glu83Lys	p.E83K	ENST00000361627	NM_014783.3	83	Gaa/Aaa	0	
TMOD3	29766		GRCh37	15	52186119	52186119	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_047																					ENST00000308580.7:c.604G>T	p.Glu202Ter	p.E202*	ENST00000308580	NM_014547.4	202	Gaa/Taa	0	
CRABP1	1381		GRCh37	15	78640281	78640281	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000299529.6:c.376G>A	p.Asp126Asn	p.D126N	ENST00000299529	NM_004378.2	126	Gat/Aat	0	
BLM	641		GRCh37	15	91306360	91306360	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000355112.3:c.2047G>A	p.Glu683Lys	p.E683K	ENST00000355112	NM_000057.2	683	Gaa/Aaa	0	
SRL	6345		GRCh37	16	4254546	4254546	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000399609.3:c.151G>A	p.Asp51Asn	p.D51N	ENST00000399609	NM_001098814.1	51	Gat/Aat	0	
CNTNAP4	85445		GRCh37	16	76486522	76486522	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_047																					ENST00000478060.1:c.970C>G	p.Gln324Glu	p.Q324E	ENST00000478060	NM_138994.3	324	Caa/Gaa	0	
TP53	7157		GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg	0	
MYH1	4619		GRCh37	17	10405210	10405210	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_047																					ENST00000226207.5:c.3130C>A	p.Gln1044Lys	p.Q1044K	ENST00000226207	NM_005963.3	1044	Caa/Aaa	0	
NEUROD2	4761		GRCh37	17	37762564	37762564	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_047																					ENST00000302584.4:c.289G>C	p.Glu97Gln	p.E97Q	ENST00000302584	NM_006160.3	97	Gag/Cag	0	
MRC2	9902		GRCh37	17	60767282	60767282	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000303375.5:c.3601G>C	p.Glu1201Gln	p.E1201Q	ENST00000303375	NM_006039.4	1201	Gag/Cag	0	
LPIN2	9663		GRCh37	18	2925263	2925263	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_047																					ENST00000261596.4:c.1897A>G	p.Thr633Ala	p.T633A	ENST00000261596	NM_014646.2	633	Act/Gct	0	
CNDP2	55748		GRCh37	18	72168635	72168635	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_047																					ENST00000324262.4:c.132G>T	p.Met44Ile	p.M44I	ENST00000324262	NM_018235.2	44	atG/atT	0	
PRKACA	5566		GRCh37	19	14211713	14211713	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000308677.4:c.344C>T	p.Ser115Leu	p.S115L	ENST00000308677	NM_002730.3	115	tCa/tTa	0	
CRTC1	23373		GRCh37	19	18886462	18886462	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_047																					ENST00000321949.8:c.1524C>A	p.Phe508Leu	p.F508L	ENST00000321949	NM_015321.2	508	ttC/ttA	0	
RASGRP4	115727		GRCh37	19	38910838	38910838	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000587738.1:c.442C>G	p.Arg148Gly	p.R148G	ENST00000587738		148	Cgt/Ggt	0	
CIC	23152		GRCh37	19	42798148	42798148	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_047																					ENST00000575354.2:c.4102G>T	p.Glu1368Ter	p.E1368*	ENST00000575354	NM_015125.3	1368	Gag/Tag	0	
PSG6	5675		GRCh37	19	43420414	43420414	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_047																					ENST00000292125.2:c.290G>T	p.Arg97Leu	p.R97L	ENST00000292125	NM_002782.4	97	cGa/cTa	0	
SBK2	646643		GRCh37	19	56042602	56042602	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000344158.3:c.364G>A	p.Ala122Thr	p.A122T	ENST00000344158		122	Gcc/Acc	0	
ZSCAN5B	342933		GRCh37	19	56703341	56703341	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_047																					ENST00000358992.3:c.466G>C	p.Asp156His	p.D156H	ENST00000358992	NM_001080456.2	156	Gat/Cat	0	
PCSK2	5126		GRCh37	20	17240977	17240977	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_047																					ENST00000262545.2:c.270G>T	p.Glu90Asp	p.E90D	ENST00000262545	NM_002594.3	90	gaG/gaT	0	
MGME1	92667		GRCh37	20	17950505	17950505	+	start_lost	Translation_Start_Site	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000377710.5:c.3G>A	p.Met1?	p.M1?	ENST00000377710	NM_052865.2	1	atG/atA	0	
SLC24A3	57419		GRCh37	20	19662530	19662530	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000328041.6:c.796G>A	p.Glu266Lys	p.E266K	ENST00000328041	NM_020689.3	266	Gag/Aag	0	
HSPA13	6782		GRCh37	21	15753715	15753715	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000285667.3:c.175C>G	p.Pro59Ala	p.P59A	ENST00000285667	NM_006948.4	59	Cca/Gca	0	
SPATC1L	84221		GRCh37	21	47581974	47581974	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_047																					ENST00000291672.5:c.552G>C	p.Gln184His	p.Q184H	ENST00000291672	NM_001142854.1	184	caG/caC	0	
PPP6R2	9701		GRCh37	22	50874840	50874840	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000216061.5:c.1561G>A	p.Glu521Lys	p.E521K	ENST00000216061		521	Gag/Aag	0	
SLC9A7	84679		GRCh37	X	46508197	46508197	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_047																					ENST00000328306.4:c.1383C>A	p.Tyr461Ter	p.Y461*	ENST00000328306	NM_001257291.1	461	taC/taA	0	
JADE3	9767		GRCh37	X	46918291	46918291	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000218343.4:c.2284C>T	p.Gln762Ter	p.Q762*	ENST00000218343	NM_014735.3	762	Cag/Tag	0	
JADE3	9767		GRCh37	X	46918388	46918388	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_047																					ENST00000218343.4:c.2381C>G	p.Ser794Ter	p.S794*	ENST00000218343	NM_014735.3	794	tCa/tGa	0	
CCNB3	85417		GRCh37	X	50056912	50056912	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000276014.7:c.3480G>A	p.Met1160Ile	p.M1160I	ENST00000276014	NM_033031.2	1160	atG/atA	0	
HEPH	9843		GRCh37	X	65392196	65392196	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BB01_047																					ENST00000343002.2:c.168-1G>C		p.X56_splice	ENST00000343002		56		0	
KIAA2022			GRCh37	X	73962765	73962765	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_047																					ENST00000055682.6:c.1627A>G	p.Ile543Val	p.I543V	ENST00000055682	NM_001008537.2	543	Atc/Gtc	0	
ATP7A	538		GRCh37	X	77227176	77227176	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_047																					ENST00000341514.6:c.38C>T	p.Ser13Phe	p.S13F	ENST00000341514	NM_000052.5	13	tCt/tTt	0	
RNF128	79589		GRCh37	X	106016376	106016376	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_047																					ENST00000255499.2:c.718C>G	p.Gln240Glu	p.Q240E	ENST00000255499	NM_194463.1	240	Caa/Gaa	0	
TENM1	10178		GRCh37	X	123514620	123514620	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_047																					ENST00000371130.3:c.7944G>C	p.Glu2648Asp	p.E2648D	ENST00000371130	NM_014253.3	2648	gaG/gaC	0	
TENM1	10178		GRCh37	X	123517700	123517700	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000371130.3:c.7060C>T	p.Gln2354Ter	p.Q2354*	ENST00000371130	NM_014253.3	2354	Cag/Tag	0	
ARHGAP36	158763		GRCh37	X	130217855	130217855	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_047																					ENST00000276211.5:c.467G>A	p.Arg156Gln	p.R156Q	ENST00000276211	NM_144967.3	156	cGa/cAa	0	
SLITRK4	139065		GRCh37	X	142717467	142717467	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_047																					ENST00000338017.4:c.1458G>T	p.Lys486Asn	p.K486N	ENST00000338017		486	aaG/aaT	0	
EIF4G3	8672		GRCh37	1	21188816	21188816	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_031																					ENST00000264211.8:c.2848G>A	p.Asp950Asn	p.D950N	ENST00000264211	NM_003760.4	950	Gac/Aac	0	
PAQR7	164091		GRCh37	1	26189619	26189619	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_031																					ENST00000374296.3:c.712C>G	p.Leu238Val	p.L238V	ENST00000374296	NM_178422.5	238	Ctt/Gtt	0	
TNR	7143		GRCh37	1	175325554	175325554	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_031																					ENST00000263525.2:c.3019C>T	p.Arg1007Trp	p.R1007W	ENST00000263525	NM_003285.2	1007	Cgg/Tgg	0	
DCTN1	1639		GRCh37	2	74590439	74590439	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_031																					ENST00000361874.3:c.3327T>G	p.His1109Gln	p.H1109Q	ENST00000361874	NM_004082.4	1109	caT/caG	0	
NEB	4703		GRCh37	2	152501057	152501057	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_031																					ENST00000172853.10:c.7569G>T	p.Lys2523Asn	p.K2523N	ENST00000172853		2523	aaG/aaT	0	
SCN7A	6332		GRCh37	2	167262827	167262827	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_031																					ENST00000409855.1:c.4312G>A	p.Gly1438Arg	p.G1438R	ENST00000409855	NM_002976.3	1438	Ggg/Agg	0	
TTN	7273		GRCh37	2	179398375	179398375	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_031																					ENST00000591111.1:c.98044G>T	p.Val32682Phe	p.V32682F	ENST00000591111		32682	Gtc/Ttc	0	
KIF1A	547		GRCh37	2	241722489	241722489	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_031																					ENST00000320389.7:c.836G>T	p.Gly279Val	p.G279V	ENST00000320389	NM_004321.6	279	gGc/gTc	0	
PRSS42	339906		GRCh37	3	46875470	46875470	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_031																					ENST00000429665.1:c.116C>T	p.Ser39Leu	p.S39L	ENST00000429665	NM_182702.1	39	tCa/tTa	0	
IFT80	57560		GRCh37	3	160025493	160025493	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_031																					ENST00000326448.7:c.1034C>A	p.Ala345Glu	p.A345E	ENST00000326448	NM_020800.2	345	gCa/gAa	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_031																					ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt	0	
PCDHA6	56142		GRCh37	5	140207942	140207942	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_031																					ENST00000529310.1:c.266G>A	p.Arg89Gln	p.R89Q	ENST00000529310	NM_018909.2	89	cGg/cAg	0	
NSD1	64324		GRCh37	5	176637883	176637883	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_031																					ENST00000439151.2:c.2483C>G	p.Ser828Cys	p.S828C	ENST00000439151	NM_022455.4	828	tCt/tGt	0	
SEMA3A	10371		GRCh37	7	83590688	83590688	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			brca_smc_2018_BB01_031																					ENST00000265362.4:c.2315G>C	p.Ter772SerextTer11	p.*772Sext*11	ENST00000265362	NM_006080.2	772	tGa/tCa	0	
KIAA2026	158358		GRCh37	9	5969120	5969120	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_031																					ENST00000399933.3:c.1111G>A	p.Ala371Thr	p.A371T	ENST00000399933	NM_001017969.2	371	Gca/Aca	0	
ZCCHC6			GRCh37	9	88924205	88924205	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BB01_031																					ENST00000375963.3:c.3583-1G>C		p.X1195_splice	ENST00000375963	NM_001185059.1	1195		0	
PCDH15	65217		GRCh37	10	55780139	55780139	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_031																					ENST00000320301.6:c.2564G>A	p.Arg855Gln	p.R855Q	ENST00000320301	NM_033056.3	855	cGg/cAg	0	
P4HA1	5033		GRCh37	10	74770789	74770789	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_031																					ENST00000307116.2:c.1375G>A	p.Asp459Asn	p.D459N	ENST00000307116		459	Gat/Aat	0	
FLI1	2313		GRCh37	11	128680837	128680837	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_031																					ENST00000527786.2:c.1313G>A	p.Arg438His	p.R438H	ENST00000527786	NM_001271010.1	438	cGc/cAc	0	
C12orf40	283461		GRCh37	12	40044092	40044092	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_031																					ENST00000324616.5:c.622C>G	p.Gln208Glu	p.Q208E	ENST00000324616	NM_001031748.2	208	Caa/Gaa	0	
FAIM2	23017		GRCh37	12	50284856	50284856	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_031																					ENST00000320634.3:c.476C>T	p.Ser159Phe	p.S159F	ENST00000320634	NM_012306.3	159	tCt/tTt	0	
NCKAP1L	3071		GRCh37	12	54914497	54914497	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_031																					ENST00000293373.6:c.1645G>A	p.Glu549Lys	p.E549K	ENST00000293373	NM_005337.4	549	Gag/Aag	0	
CHAMP1	283489		GRCh37	13	115089339	115089339	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_031																					ENST00000361283.1:c.22C>T	p.Arg8Cys	p.R8C	ENST00000361283	NM_032436.2	8	Cgt/Tgt	0	
ARHGAP5	394		GRCh37	14	32561533	32561533	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_031																					ENST00000345122.3:c.1658C>G	p.Thr553Ser	p.T553S	ENST00000345122	NM_001030055.1	553	aCt/aGt	0	
TUBGCP5	114791		GRCh37	15	22855040	22855040	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_031																					ENST00000283645.4:c.1501C>G	p.Pro501Ala	p.P501A	ENST00000283645	NM_052903.4	501	Cca/Gca	0	
RYR3	6263		GRCh37	15	34077886	34077886	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_031																					ENST00000389232.4:c.9292G>A	p.Glu3098Lys	p.E3098K	ENST00000389232	NM_001036.3	3098	Gaa/Aaa	0	
TP53	7157		GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_031																					ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag	0	
NF1	4763		GRCh37	17	29562710	29562710	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_031																					ENST00000358273.4:c.3790G>C	p.Glu1264Gln	p.E1264Q	ENST00000358273	NM_001042492.2	1264	Gaa/Caa	0	
C17orf96			GRCh37	17	36830585	36830585	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_031																					ENST00000325814.5:c.164C>T	p.Ser55Phe	p.S55F	ENST00000325814	NM_001130677.1	55	tCt/tTt	0	
GSDMA	284110		GRCh37	17	38126856	38126856	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_031																					ENST00000301659.4:c.514G>A	p.Glu172Lys	p.E172K	ENST00000301659	NM_178171.4	172	Gag/Aag	0	
SERPINB3	6317		GRCh37	18	61324157	61324157	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_031																					ENST00000283752.5:c.676G>A	p.Asp226Asn	p.D226N	ENST00000283752	NM_006919.2	226	Gat/Aat	0	
SIPA1L3	23094		GRCh37	19	38655429	38655429	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_031																					ENST00000222345.6:c.4091C>T	p.Ser1364Phe	p.S1364F	ENST00000222345	NM_015073.1	1364	tCc/tTc	0	
PTPRH	5794		GRCh37	19	55697321	55697321	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_031																					ENST00000376350.3:c.2810C>G	p.Ser937Trp	p.S937W	ENST00000376350	NM_002842.3	937	tCg/tGg	0	
TUBB1	81027		GRCh37	20	57599243	57599243	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_031																					ENST00000217133.1:c.761C>T	p.Ala254Val	p.A254V	ENST00000217133	NM_030773.3	254	gCg/gTg	0	
SPTA1	6708		GRCh37	1	158619650	158619650	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_017																					ENST00000368147.4:c.3565C>A	p.His1189Asn	p.H1189N	ENST00000368147	NM_003126.2	1189	Cac/Aac	0	
TPR	7175		GRCh37	1	186306219	186306219	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_017																					ENST00000367478.4:c.4432G>A	p.Glu1478Lys	p.E1478K	ENST00000367478	NM_003292.2	1478	Gaa/Aaa	0	
ITPKB	3707		GRCh37	1	226825382	226825382	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_017																					ENST00000272117.3:c.2623G>A	p.Glu875Lys	p.E875K	ENST00000272117		875	Gag/Aag	0	
OBSCN	84033		GRCh37	1	228456443	228456443	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_017																					ENST00000422127.1:c.5074G>A	p.Glu1692Lys	p.E1692K	ENST00000422127	NM_001098623.2	1692	Gag/Aag	0	
POMC	5443		GRCh37	2	25384414	25384414	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_017																					ENST00000264708.3:c.340G>A	p.Gly114Ser	p.G114S	ENST00000264708		114	Ggc/Agc	0	
KIF3C	3797		GRCh37	2	26152873	26152873	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_017																					ENST00000264712.3:c.2066G>C	p.Ser689Thr	p.S689T	ENST00000264712	NM_002254.6	689	aGc/aCc	0	
DNAH7	56171		GRCh37	2	196718254	196718254	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			brca_smc_2018_BB01_017																					ENST00000312428.6:c.8596-2A>C		p.X2866_splice	ENST00000312428	NM_018897.2	2866		0	
SATB1	6304		GRCh37	3	18458516	18458516	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_017																					ENST00000338745.6:c.266A>T	p.Tyr89Phe	p.Y89F	ENST00000338745	NM_002971.4	89	tAt/tTt	0	
DDX60	55601		GRCh37	4	169214963	169214963	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_017																					ENST00000393743.3:c.857C>G	p.Ser286Cys	p.S286C	ENST00000393743	NM_017631.5	286	tCt/tGt	0	
FAT1	2195		GRCh37	4	187584759	187584759	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_017																					ENST00000441802.2:c.3274G>T	p.Glu1092Ter	p.E1092*	ENST00000441802	NM_005245.3	1092	Gag/Tag	0	
ERAP2	64167		GRCh37	5	96244720	96244720	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_017																					ENST00000437043.3:c.2068G>A	p.Glu690Lys	p.E690K	ENST00000437043	NM_001130140.1	690	Gaa/Aaa	0	
PCDHA8	56140		GRCh37	5	140221585	140221585	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_017																					ENST00000531613.1:c.679C>A	p.Gln227Lys	p.Q227K	ENST00000531613	NM_018911.2	227	Cag/Aag	0	
MDGA1	266727		GRCh37	6	37614046	37614046	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_017																					ENST00000434837.3:c.2152G>A	p.Glu718Lys	p.E718K	ENST00000434837	NM_153487.3	718	Gag/Aag	0	
TMEM151B	441151		GRCh37	6	44243779	44243779	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_017																					ENST00000451188.2:c.1216G>A	p.Gly406Ser	p.G406S	ENST00000451188	NM_001137560.1	406	Ggc/Agc	0	
SUPT3H	8464		GRCh37	6	44921049	44921049	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_017																					ENST00000371460.1:c.832G>A	p.Glu278Lys	p.E278K	ENST00000371460	NM_181356.2	278	Gag/Aag	0	
REV3L	5980		GRCh37	6	111701420	111701420	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_017																					ENST00000358835.3:c.1219G>A	p.Asp407Asn	p.D407N	ENST00000358835		407	Gac/Aac	0	
NFE2L3	9603		GRCh37	7	26224637	26224637	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_017																					ENST00000056233.3:c.1319C>T	p.Ser440Phe	p.S440F	ENST00000056233	NM_004289.6	440	tCt/tTt	0	
EGFR	1956		GRCh37	7	55233024	55233024	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_017																					ENST00000275493.2:c.1774G>A	p.Val592Ile	p.V592I	ENST00000275493	NM_005228.3	592	Gtc/Atc	0	
GFRA2	2675		GRCh37	8	21550898	21550898	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_017																					ENST00000517328.1:c.1287C>G	p.Ile429Met	p.I429M	ENST00000517328		429	atC/atG	0	
TMEM261			GRCh37	9	7798584	7798584	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_017																					ENST00000358227.4:c.328C>T	p.Arg110Cys	p.R110C	ENST00000358227	NM_033428.1	110	Cgc/Tgc	0	
GPR107	57720		GRCh37	9	132863461	132863461	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_017																					ENST00000372406.1:c.1090G>A	p.Asp364Asn	p.D364N	ENST00000372406	NM_001136557.1	364	Gat/Aat	0	
C9orf96			GRCh37	9	136265558	136265558	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_017																					ENST00000371957.3:c.1099G>A	p.Glu367Lys	p.E367K	ENST00000371957	NM_153710.4	367	Gag/Aag	0	
TET1	80312		GRCh37	10	70451077	70451077	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_017																					ENST00000373644.4:c.5917G>A	p.Glu1973Lys	p.E1973K	ENST00000373644	NM_030625.2	1973	Gaa/Aaa	0	
BCCIP	56647		GRCh37	10	127519161	127519161	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_017																					ENST00000278100.6:c.352G>A	p.Asp118Asn	p.D118N	ENST00000278100	NM_078468.2	118	Gat/Aat	0	
TRPM5	29850		GRCh37	11	2437173	2437173	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_017																					ENST00000155858.6:c.1091C>T	p.Ala364Val	p.A364V	ENST00000155858	NM_014555.3	364	gCc/gTc	0	
NUP98	4928		GRCh37	11	3707349	3707349	+	intron_variant	Intron	SNP	G	G	C			brca_smc_2018_BB01_017																					ENST00000359171.4:c.4455-2678C>G		p.*1485*	ENST00000359171				0	
FAT3	120114		GRCh37	11	92577275	92577275	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_017																					ENST00000298047.6:c.10742A>T	p.Tyr3581Phe	p.Y3581F	ENST00000298047		3581	tAt/tTt	0	
ARHGEF12	23365		GRCh37	11	120300508	120300508	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_017																					ENST00000397843.2:c.751G>A	p.Glu251Lys	p.E251K	ENST00000397843	NM_015313.2	251	Gag/Aag	0	
LARP4	113251		GRCh37	12	50855114	50855114	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_017																					ENST00000398473.2:c.1318G>T	p.Asp440Tyr	p.D440Y	ENST00000398473	NM_199188.2	440	Gac/Tac	0	
BRAP	8315		GRCh37	12	112119483	112119483	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_017																					ENST00000419234.4:c.401C>T	p.Ser134Leu	p.S134L	ENST00000419234	NM_006768.3	134	tCa/tTa	0	
FBRSL1	57666		GRCh37	12	133146600	133146600	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_017																					ENST00000434748.2:c.780C>A	p.Ser260Arg	p.S260R	ENST00000434748	NM_001142641.1	260	agC/agA	0	
SOX1	6656		GRCh37	13	112722969	112722969	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_017																					ENST00000330949.1:c.997C>T	p.Arg333Trp	p.R333W	ENST00000330949	NM_005986.2	333	Cgg/Tgg	0	
MGAT2	4247		GRCh37	14	50088656	50088656	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_017																					ENST00000305386.2:c.670G>A	p.Glu224Lys	p.E224K	ENST00000305386	NM_002408.3	224	Gag/Aag	0	
MRPL28	10573		GRCh37	16	419100	419100	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_017																					ENST00000199706.8:c.409G>A	p.Glu137Lys	p.E137K	ENST00000199706	NM_006428.4	137	Gag/Aag	0	
PALB2	79728		GRCh37	16	23649173	23649173	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_017																					ENST00000261584.4:c.209C>T	p.Ser70Leu	p.S70L	ENST00000261584	NM_024675.3	70	tCa/tTa	0	
IL21R	50615		GRCh37	16	27454349	27454349	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_017																					ENST00000337929.3:c.419C>T	p.Ser140Leu	p.S140L	ENST00000337929	NM_181078.2	140	tCa/tTa	0	
TP53	7157		GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_017																					ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg	0	
C17orf59			GRCh37	17	8093110	8093110	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_017																					ENST00000389017.4:c.349G>A	p.Glu117Lys	p.E117K	ENST00000389017	NM_017622.2	117	Gag/Aag	0	
MYO19	80179		GRCh37	17	34862927	34862927	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_017																					ENST00000431794.3:c.1519G>A	p.Glu507Lys	p.E507K	ENST00000431794	NM_001163735.1	507	Gag/Aag	0	
MBD2	8932		GRCh37	18	51750392	51750392	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_017																					ENST00000256429.3:c.538T>C	p.Phe180Leu	p.F180L	ENST00000256429	NM_003927.4	180	Ttc/Ctc	0	
CYP4F3	4051		GRCh37	19	15770101	15770101	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_017																					ENST00000221307.8:c.1469G>A	p.Arg490His	p.R490H	ENST00000221307	NM_000896.2	490	cGc/cAc	0	
KRTAP24-1	643803		GRCh37	21	31655076	31655076	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_017																					ENST00000340345.4:c.175G>A	p.Asp59Asn	p.D59N	ENST00000340345	NM_001085455.1	59	Gat/Aat	0	
MXRA5	25878		GRCh37	X	3235321	3235321	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_017																					ENST00000217939.6:c.6401C>T	p.Thr2134Met	p.T2134M	ENST00000217939	NM_015419.3	2134	aCg/aTg	0	
PDZD4	57595		GRCh37	X	153069148	153069148	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_017																					ENST00000164640.4:c.1970G>A	p.Arg657His	p.R657H	ENST00000164640	NM_032512.2	657	cGc/cAc	0	
F13B	2165		GRCh37	1	197036328	197036328	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_023																					ENST00000367412.1:c.26T>C	p.Ile9Thr	p.I9T	ENST00000367412	NM_001994.2	9	aTc/aCc	0	
CYP27C1	339761		GRCh37	2	127950725	127950725	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_023																					ENST00000335247.7:c.947G>A	p.Arg316His	p.R316H	ENST00000335247	NM_001001665.3	316	cGc/cAc	0	
WDR33	55339		GRCh37	2	128477717	128477717	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_023																					ENST00000322313.4:c.1882C>T	p.Pro628Ser	p.P628S	ENST00000322313	NM_018383.4	628	Cct/Tct	0	
CSRNP1	64651		GRCh37	3	39188059	39188059	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_023																					ENST00000273153.5:c.115G>T	p.Val39Phe	p.V39F	ENST00000273153	NM_033027.3	39	Gtc/Ttc	0	
MYO10	4651		GRCh37	5	16703043	16703043	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_023																					ENST00000513610.1:c.2501A>T	p.Glu834Val	p.E834V	ENST00000513610	NM_012334.2	834	gAa/gTa	0	
CLIC5	53405		GRCh37	6	46047499	46047499	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_023																					ENST00000185206.6:c.481G>A	p.Glu161Lys	p.E161K	ENST00000185206	NM_001114086.1	161	Gaa/Aaa	0	
PHRF1	57661		GRCh37	11	607174	607174	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_023																					ENST00000264555.5:c.1718C>A	p.Pro573Gln	p.P573Q	ENST00000264555	NM_020901.2	573	cCg/cAg	0	
CUL5	8065		GRCh37	11	107960261	107960261	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_023																					ENST00000393094.2:c.1354A>T	p.Arg452Trp	p.R452W	ENST00000393094	NM_003478.3	452	Agg/Tgg	0	
APLP2	334		GRCh37	11	130011425	130011425	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_023																					ENST00000263574.5:c.1992G>A	p.Met664Ile	p.M664I	ENST00000263574	NM_001642.2	664	atG/atA	0	
CCDC175	729665		GRCh37	14	60030520	60030520	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_023																					ENST00000537690.2:c.778A>G	p.Lys260Glu	p.K260E	ENST00000537690	NM_001164399.1	260	Aaa/Gaa	0	
GALK1	2584		GRCh37	17	73754642	73754642	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_023																					ENST00000225614.2:c.832G>A	p.Ala278Thr	p.A278T	ENST00000225614		278	Gcc/Acc	0	
PEX14	5195		GRCh37	1	10689925	10689925	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_006																					ENST00000356607.4:c.1015G>A	p.Glu339Lys	p.E339K	ENST00000356607	NM_004565.2	339	Gag/Aag	0	
CCDC19			GRCh37	1	159860294	159860294	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_006																					ENST00000368099.4:c.248C>A	p.Thr83Asn	p.T83N	ENST00000368099	NM_012337.2	83	aCc/aAc	0	
LGR6	59352		GRCh37	1	202278190	202278190	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_006																					ENST00000367278.3:c.1292A>T	p.Asp431Val	p.D431V	ENST00000367278	NM_001017403.1	431	gAc/gTc	0	
KDM5B	10765		GRCh37	1	202727586	202727586	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_006																					ENST00000367265.3:c.1130A>G	p.Tyr377Cys	p.Y377C	ENST00000367265	NM_006618.3	377	tAt/tGt	0	
CNTN2	6900		GRCh37	1	205027133	205027133	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_006																					ENST00000331830.4:c.155C>A	p.Ser52Tyr	p.S52Y	ENST00000331830	NM_005076.3	52	tCc/tAc	0	
RAB3GAP2	25782		GRCh37	1	220324970	220324970	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_006																					ENST00000358951.2:c.4004T>A	p.Leu1335Gln	p.L1335Q	ENST00000358951	NM_012414.3	1335	cTg/cAg	0	
LEFTY2	7044		GRCh37	1	226125343	226125343	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_006																					ENST00000366820.5:c.899C>G	p.Pro300Arg	p.P300R	ENST00000366820	NM_003240.3	300	cCc/cGc	0	
OBSCN	84033		GRCh37	1	228505620	228505620	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_006																					ENST00000422127.1:c.13877A>C	p.Gln4626Pro	p.Q4626P	ENST00000422127	NM_001098623.2	4626	cAg/cCg	0	
ROCK2	9475		GRCh37	2	11341193	11341193	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_006																					ENST00000315872.6:c.2800G>C	p.Glu934Gln	p.E934Q	ENST00000315872	NM_004850.3	934	Gaa/Caa	0	
APOB	338		GRCh37	2	21231062	21231062	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_006																					ENST00000233242.1:c.8678T>C	p.Leu2893Ser	p.L2893S	ENST00000233242	NM_000384.2	2893	tTg/tCg	0	
SLC4A5	57835		GRCh37	2	74479477	74479477	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_006																					ENST00000346834.4:c.1307A>G	p.Asn436Ser	p.N436S	ENST00000346834		436	aAt/aGt	0	
VIL1	7429		GRCh37	2	219300094	219300094	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_006																					ENST00000248444.5:c.1763G>T	p.Gly588Val	p.G588V	ENST00000248444	NM_007127.2	588	gGg/gTg	0	
GMPPB	29925		GRCh37	3	49760141	49760141	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_006																					ENST00000308388.6:c.449A>C	p.Glu150Ala	p.E150A	ENST00000308388	NM_013334.3	150	gAg/gCg	0	
AC093677.1			GRCh37	4	75023936	75023936	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_006																					ENST00000600169.1:c.150G>C	p.Glu50Asp	p.E50D	ENST00000600169		50	gaG/gaC	0	
SNX25	83891		GRCh37	4	186244952	186244952	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_006																					ENST00000264694.8:c.1255A>G	p.Met419Val	p.M419V	ENST00000264694	NM_031953.2	419	Atg/Gtg	0	
NPR3	4883		GRCh37	5	32712111	32712111	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_006																					ENST00000265074.8:c.229G>T	p.Glu77Ter	p.E77*	ENST00000265074	NM_001204375.1	77	Gag/Tag	0	
NLN	57486		GRCh37	5	65108142	65108142	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_006																					ENST00000380985.5:c.1904G>C	p.Gly635Ala	p.G635A	ENST00000380985	NM_020726.4	635	gGa/gCa	0	
SYCP2L	221711		GRCh37	6	10942950	10942950	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_006																					ENST00000283141.6:c.1925A>G	p.Lys642Arg	p.K642R	ENST00000283141	NM_001040274.2	642	aAa/aGa	0	
AIM1			GRCh37	6	106960785	106960785	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_006																					ENST00000369066.3:c.569G>T	p.Arg190Leu	p.R190L	ENST00000369066	NM_001624.2	190	cGg/cTg	0	
NKAIN2	154215		GRCh37	6	124604158	124604158	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_006																					ENST00000368417.1:c.62T>A	p.Val21Glu	p.V21E	ENST00000368417	NM_001040214.1	21	gTg/gAg	0	
ECT2L	345930		GRCh37	6	139206642	139206642	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BB01_006																					ENST00000367682.2:c.2029-1G>C		p.X677_splice	ENST00000367682	NM_001077706.2	677		0	
PLAGL1	5325		GRCh37	6	144269187	144269187	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_006																					ENST00000354765.2:c.87G>C	p.Glu29Asp	p.E29D	ENST00000354765		29	gaG/gaC	0	
ESYT2	57488		GRCh37	7	158555777	158555777	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_006																					ENST00000251527.5:c.1325G>C	p.Gly442Ala	p.G442A	ENST00000251527	NM_020728.2	442	gGa/gCa	0	
DNAI1	27019		GRCh37	9	34514667	34514667	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_006																					ENST00000242317.4:c.1748C>G	p.Ser583Ter	p.S583*	ENST00000242317	NM_012144.3	583	tCa/tGa	0	
AL354898.1			GRCh37	9	133278674	133278674	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_006																					ENST00000277491.7:c.323C>T	p.Pro108Leu	p.P108L	ENST00000277491		108	cCg/cTg	0	
CHUK	1147		GRCh37	10	101964855	101964855	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_006																					ENST00000370397.7:c.1333T>G	p.Phe445Val	p.F445V	ENST00000370397	NM_001278.3	445	Ttt/Gtt	0	
OR52A5	390054		GRCh37	11	5153080	5153080	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_006																					ENST00000307388.1:c.793C>A	p.His265Asn	p.H265N	ENST00000307388	NM_001005160.2	265	Cac/Aac	0	
ARHGAP32	9743		GRCh37	11	128843232	128843232	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_006																					ENST00000310343.9:c.3127T>G	p.Leu1043Val	p.L1043V	ENST00000310343	NM_001142685.1	1043	Ttg/Gtg	0	
ITPR2	3709		GRCh37	12	26629896	26629896	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_006																					ENST00000381340.3:c.6168T>G	p.His2056Gln	p.H2056Q	ENST00000381340	NM_002223.2	2056	caT/caG	0	
STK38L	23012		GRCh37	12	27468221	27468221	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BB01_006																					ENST00000389032.3:c.776-1G>C		p.X259_splice	ENST00000389032	NM_015000.3	259		0	
STK38L	23012		GRCh37	12	27468222	27468222	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_006																					ENST00000389032.3:c.776C>T	p.Ser259Leu	p.S259L	ENST00000389032	NM_015000.3	259	tCa/tTa	0	
ACACB	32		GRCh37	12	109665192	109665192	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_006																					ENST00000338432.7:c.3899G>A	p.Gly1300Asp	p.G1300D	ENST00000338432		1300	gGc/gAc	0	
FRY	10129		GRCh37	13	32808887	32808887	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_006																					ENST00000380250.3:c.5704G>A	p.Asp1902Asn	p.D1902N	ENST00000380250	NM_023037.2	1902	Gat/Aat	0	
ATP11A	23250		GRCh37	13	113439480	113439480	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_006																					ENST00000375645.3:c.71G>C	p.Arg24Thr	p.R24T	ENST00000375645	NM_015205.2	24	aGg/aCg	0	
TRAJ14	28741		GRCh37	14	22999311	22999311	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_006																					ENST00000390523.1:c.34A>G	p.Arg12Gly	p.R12G	ENST00000390523		12	Aga/Gga	0	
ARID4A	5926		GRCh37	14	58827635	58827635	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_006																					ENST00000355431.3:c.1955A>G	p.Glu652Gly	p.E652G	ENST00000355431	NM_002892.3	652	gAa/gGa	0	
TRPM7	54822		GRCh37	15	50925191	50925191	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			brca_smc_2018_BB01_006																					ENST00000313478.7:c.1008-2A>G		p.X336_splice	ENST00000313478	NM_017672.4	336		0	
MAN2C1	4123		GRCh37	15	75660882	75660882	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_006																					ENST00000267978.5:c.43G>C	p.Glu15Gln	p.E15Q	ENST00000267978	NM_006715.3	15	Gag/Cag	0	
CHTF18	63922		GRCh37	16	842270	842270	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_006																					ENST00000262315.9:c.1249A>G	p.Thr417Ala	p.T417A	ENST00000262315	NM_022092.2	417	Acc/Gcc	0	
KRTAP4-8	728224		GRCh37	17	39254054	39254054	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_006																					ENST00000333822.4:c.283T>A	p.Cys95Ser	p.C95S	ENST00000333822	NM_031960.2	95	Tgc/Agc	0	
CA10	56934		GRCh37	17	49713236	49713236	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_006																					ENST00000285273.4:c.769G>T	p.Val257Phe	p.V257F	ENST00000285273	NM_001082533.1	257	Gtc/Ttc	0	
ITGB4	3691		GRCh37	17	73724538	73724538	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_006																					ENST00000200181.3:c.550G>T	p.Asp184Tyr	p.D184Y	ENST00000200181	NM_000213.3	184	Gac/Tac	0	
GCGR	2642		GRCh37	17	79768927	79768927	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_006																					ENST00000400723.3:c.313C>T	p.Gln105Ter	p.Q105*	ENST00000400723	NM_000160.3	105	Cag/Tag	0	
S1PR2	9294		GRCh37	19	10335247	10335247	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_006																					ENST00000590320.1:c.335C>T	p.Ala112Val	p.A112V	ENST00000590320	NM_004230.3	112	gCc/gTc	0	
DMKN	93099		GRCh37	19	36004275	36004275	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_006																					ENST00000339686.3:c.103A>T	p.Ile35Phe	p.I35F	ENST00000339686	NM_033317.4	35	Att/Ttt	0	
ZNF835	90485		GRCh37	19	57175145	57175145	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_006																					ENST00000537055.2:c.1422C>A	p.Tyr474Ter	p.Y474*	ENST00000537055	NM_001005850.2	474	taC/taA	0	
SIRPB1	10326		GRCh37	20	1552503	1552503	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_006																					ENST00000381605.4:c.614C>T	p.Ser205Phe	p.S205F	ENST00000381605	NM_006065.3	205	tCc/tTc	0	
CDH4	1002		GRCh37	20	60348170	60348170	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_006																					ENST00000360469.5:c.508G>A	p.Asp170Asn	p.D170N	ENST00000360469	NM_001794.3	170	Gac/Aac	0	
TCFL5	10732		GRCh37	20	61490845	61490845	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_006																					ENST00000335351.3:c.865G>A	p.Ala289Thr	p.A289T	ENST00000335351	NM_006602.2	289	Gcc/Acc	0	
TXN2	25828		GRCh37	22	36872780	36872780	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_006																					ENST00000216185.2:c.387G>T	p.Glu129Asp	p.E129D	ENST00000216185		129	gaG/gaT	0	
CXorf38	159013		GRCh37	X	40496356	40496356	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_006																					ENST00000327877.5:c.524C>A	p.Ser175Tyr	p.S175Y	ENST00000327877	NM_144970.2	175	tCt/tAt	0	
CXorf67	340602		GRCh37	X	51151229	51151229	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_006																					ENST00000342995.2:c.1361A>G	p.Glu454Gly	p.E454G	ENST00000342995		454	gAg/gGg	0	
APEX2	27301		GRCh37	X	55030244	55030244	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_006																					ENST00000374987.3:c.582T>G	p.Ile194Met	p.I194M	ENST00000374987	NM_014481.3	194	atT/atG	0	
USP26	83844		GRCh37	X	132160431	132160431	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_006																					ENST00000370832.1:c.1818G>T	p.Lys606Asn	p.K606N	ENST00000370832	NM_031907.1	606	aaG/aaT	0	
TAS1R1	80835		GRCh37	1	6634935	6634935	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_018																					ENST00000333172.6:c.743C>T	p.Ser248Phe	p.S248F	ENST00000333172	NM_138697.3	248	tCt/tTt	0	
ARID1A	8289		GRCh37	1	27023581	27023581	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_018																					ENST00000324856.7:c.687C>A	p.Tyr229Ter	p.Y229*	ENST00000324856	NM_006015.4	229	taC/taA	0	
TPR	7175		GRCh37	1	186306159	186306159	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_018																					ENST00000367478.4:c.4492G>C	p.Glu1498Gln	p.E1498Q	ENST00000367478	NM_003292.2	1498	Gag/Cag	0	
RASSF5	83593		GRCh37	1	206681296	206681296	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_018																					ENST00000355294.4:c.361G>T	p.Glu121Ter	p.E121*	ENST00000355294	NM_182663.2	121	Gag/Tag	0	
ERLEC1	27248		GRCh37	2	54014441	54014441	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_018																					ENST00000185150.4:c.94C>G	p.Arg32Gly	p.R32G	ENST00000185150	NM_015701.4	32	Cga/Gga	0	
COL4A3	1285		GRCh37	2	228104868	228104868	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_018																					ENST00000396578.3:c.154G>A	p.Gly52Ser	p.G52S	ENST00000396578	NM_000091.4	52	Ggc/Agc	0	
SPHKAP	80309		GRCh37	2	228882373	228882373	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_018																					ENST00000392056.3:c.3197G>A	p.Arg1066Gln	p.R1066Q	ENST00000392056	NM_001142644.1	1066	cGg/cAg	0	
SI	6476		GRCh37	3	164735449	164735449	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_018																					ENST00000264382.3:c.3646C>T	p.Pro1216Ser	p.P1216S	ENST00000264382	NM_001041.3	1216	Cca/Tca	0	
RMND1	55005		GRCh37	6	151743717	151743717	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_018																					ENST00000367303.4:c.961T>C	p.Ser321Pro	p.S321P	ENST00000367303	NM_017909.3	321	Tca/Cca	0	
PPP2R2A	5520		GRCh37	8	26221266	26221266	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_018																					ENST00000380737.3:c.832A>G	p.Arg278Gly	p.R278G	ENST00000380737	NM_002717.3	278	Agg/Ggg	0	
RB1CC1	9821		GRCh37	8	53568922	53568922	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_018																					ENST00000025008.5:c.3467A>G	p.Asn1156Ser	p.N1156S	ENST00000025008	NM_014781.4	1156	aAc/aGc	0	
TYSND1	219743		GRCh37	10	71902546	71902546	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_018																					ENST00000287078.6:c.1361C>G	p.Ser454Ter	p.S454*	ENST00000287078	NM_173555.3	454	tCa/tGa	0	
FBXL15	79176		GRCh37	10	104181607	104181607	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_018																					ENST00000224862.3:c.271G>A	p.Glu91Lys	p.E91K	ENST00000224862	NM_024326.3	91	Gag/Aag	0	
C11orf65	160140		GRCh37	11	108332250	108332250	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_018																					ENST00000393084.1:c.37G>A	p.Asp13Asn	p.D13N	ENST00000393084	NM_152587.3	13	Gat/Aat	0	
C12orf4	57102		GRCh37	12	4599020	4599020	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_018																					ENST00000261250.3:c.1612C>A	p.Gln538Lys	p.Q538K	ENST00000261250	NM_020374.2	538	Cag/Aag	0	
ATXN2	6311		GRCh37	12	111953958	111953958	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_018																					ENST00000377617.3:c.1855G>T	p.Gly619Trp	p.G619W	ENST00000377617	NM_002973.3	619	Ggg/Tgg	0	
CPB2	1361		GRCh37	13	46641513	46641513	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_018																					ENST00000181383.4:c.631C>G	p.Leu211Val	p.L211V	ENST00000181383	NM_001872.4	211	Ctc/Gtc	0	
AREL1	9870		GRCh37	14	75142449	75142449	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_018																					ENST00000356357.4:c.1033G>C	p.Glu345Gln	p.E345Q	ENST00000356357	NM_001039479.1	345	Gag/Cag	0	
RP11-830F9.6			GRCh37	16	89017763	89017763	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_018																					ENST00000378347.2:c.1237G>T	p.Glu413Ter	p.E413*	ENST00000378347		413	Gag/Tag	0	
TP53	7157		GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_018																					ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA	0	
SUPT6H	6830		GRCh37	17	27005884	27005884	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_018																					ENST00000314616.6:c.1252G>C	p.Glu418Gln	p.E418Q	ENST00000314616	NM_003170.3	418	Gag/Cag	0	
SLFN11	91607		GRCh37	17	33690171	33690171	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_018																					ENST00000308377.4:c.656C>G	p.Ser219Cys	p.S219C	ENST00000308377	NM_152270.3	219	tCt/tGt	0	
GFAP	2670		GRCh37	17	42992500	42992500	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_018																					ENST00000253408.5:c.355G>A	p.Glu119Lys	p.E119K	ENST00000253408	NM_002055.4	119	Gag/Aag	0	
SPAG9	9043		GRCh37	17	49091653	49091653	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_018																					ENST00000262013.7:c.1153G>A	p.Glu385Lys	p.E385K	ENST00000262013	NM_001130528.2	385	Gaa/Aaa	0	
INTS2	57508		GRCh37	17	59946476	59946476	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_018																					ENST00000444766.3:c.3187C>G	p.His1063Asp	p.H1063D	ENST00000444766	NM_020748.2	1063	Cac/Gac	0	
JMJD6	23210		GRCh37	17	74714831	74714831	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_018																					ENST00000397625.4:c.1192G>A	p.Glu398Lys	p.E398K	ENST00000397625	NM_015167.2	398	Gag/Aag	0	
ZNF546	339327		GRCh37	19	40519929	40519929	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_018																					ENST00000347077.4:c.752G>C	p.Gly251Ala	p.G251A	ENST00000347077	NM_178544.3	251	gGa/gCa	0	
ZNF546	339327		GRCh37	19	40520213	40520213	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_018																					ENST00000347077.4:c.1036G>T	p.Glu346Ter	p.E346*	ENST00000347077	NM_178544.3	346	Gaa/Taa	0	
ZNF865	100507290		GRCh37	19	56127583	56127583	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_018																					ENST00000568956.1:c.2599C>T	p.Gln867Ter	p.Q867*	ENST00000568956	NM_001195605.1	867	Cag/Tag	0	
BACE2	25825		GRCh37	21	42540421	42540421	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_018																					ENST00000330333.6:c.231C>G	p.Phe77Leu	p.F77L	ENST00000330333	NM_012105.4	77	ttC/ttG	0	
HORMAD2	150280		GRCh37	22	30518175	30518175	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_018																					ENST00000336726.6:c.791G>A	p.Cys264Tyr	p.C264Y	ENST00000336726	NM_152510.2	264	tGt/tAt	0	
ZXDA	7789		GRCh37	X	57935380	57935380	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_018																					ENST00000358697.4:c.1475C>T	p.Thr492Met	p.T492M	ENST00000358697	NM_007156.4	492	aCg/aTg	0	
SLC25A33	84275		GRCh37	1	9642407	9642407	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_037																					ENST00000302692.6:c.814G>A	p.Val272Ile	p.V272I	ENST00000302692	NM_032315.2	272	Gtc/Atc	0	
PUM1	9698		GRCh37	1	31425161	31425161	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_037																					ENST00000257075.5:c.2641G>C	p.Val881Leu	p.V881L	ENST00000257075	NM_014676.2	881	Gtc/Ctc	0	
CSF3R	1441		GRCh37	1	36933449	36933449	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_037																					ENST00000361632.4:c.1838T>C	p.Val613Ala	p.V613A	ENST00000361632		613	gTc/gCc	0	
MROH7	374977		GRCh37	1	55138847	55138847	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_037																					ENST00000421030.2:c.1683G>C	p.Lys561Asn	p.K561N	ENST00000421030	NM_001039464.2	561	aaG/aaC	0	
TSACC	128229		GRCh37	1	156309423	156309423	+	intron_variant	Intron	SNP	A	A	G			brca_smc_2018_BB01_037																					ENST00000368251.1:c.-23-103A>G		p.*8*	ENST00000368251				0	
CASQ1	844		GRCh37	1	160164856	160164856	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_037																					ENST00000368078.3:c.520G>C	p.Glu174Gln	p.E174Q	ENST00000368078		174	Gag/Cag	0	
PLA2G4A	5321		GRCh37	1	186880484	186880484	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_037																					ENST00000367466.3:c.521G>C	p.Gly174Ala	p.G174A	ENST00000367466	NM_024420.2	174	gGt/gCt	0	
CRB1	23418		GRCh37	1	197398648	197398648	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_037																					ENST00000367400.3:c.2746C>A	p.Leu916Ile	p.L916I	ENST00000367400	NM_201253.2	916	Ctc/Atc	0	
MFSD4			GRCh37	1	205538325	205538325	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_037																					ENST00000367147.4:c.128G>A	p.Arg43His	p.R43H	ENST00000367147	NM_181644.4	43	cGc/cAc	0	
DUSP11	8446		GRCh37	2	73993986	73993986	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_037																					ENST00000272444.3:c.727A>T	p.Ile243Phe	p.I243F	ENST00000272444	NM_003584.2	243	Att/Ttt	0	
THSD7B	80731		GRCh37	2	137852453	137852453	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_037																					ENST00000272643.3:c.961C>G	p.Gln321Glu	p.Q321E	ENST00000272643		321	Caa/Gaa	0	
CACNB4	785		GRCh37	2	152739877	152739877	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_037																					ENST00000539935.1:c.155C>G	p.Ala52Gly	p.A52G	ENST00000539935	NM_001145798.1	52	gCg/gGg	0	
ANKAR	150709		GRCh37	2	190595232	190595232	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_037																					ENST00000313581.4:c.3205A>G	p.Thr1069Ala	p.T1069A	ENST00000313581		1069	Aca/Gca	0	
DGKD	8527		GRCh37	2	234343088	234343088	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_037																					ENST00000264057.2:c.411G>A	p.Trp137Ter	p.W137*	ENST00000264057	NM_152879.2	137	tgG/tgA	0	
AGXT	189		GRCh37	2	241814620	241814620	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_037																					ENST00000307503.3:c.775A>C	p.Met259Leu	p.M259L	ENST00000307503	NM_000030.2	259	Atg/Ctg	0	
XPC	7508		GRCh37	3	14199963	14199963	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_037																					ENST00000285021.7:c.1420C>G	p.Gln474Glu	p.Q474E	ENST00000285021	NM_004628.4	474	Cag/Gag	0	
SCN5A	6331		GRCh37	3	38674747	38674747	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_037																					ENST00000333535.4:c.52C>G	p.Arg18Gly	p.R18G	ENST00000333535		18	Cgg/Ggg	0	
CCR3	1232		GRCh37	3	46307272	46307272	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_037																					ENST00000357422.2:c.623T>C	p.Leu208Pro	p.L208P	ENST00000357422		208	cTc/cCc	0	
COL8A1	1295		GRCh37	3	99513557	99513557	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_037																					ENST00000261037.3:c.812T>G	p.Val271Gly	p.V271G	ENST00000261037	NM_001850.4	271	gTg/gGg	0	
RHO	6010		GRCh37	3	129251219	129251219	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_037																					ENST00000296271.3:c.656T>A	p.Ile219Asn	p.I219N	ENST00000296271	NM_000539.3	219	aTc/aAc	0	
TFDP2	7029		GRCh37	3	141678615	141678615	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_037																					ENST00000489671.1:c.952A>G	p.Met318Val	p.M318V	ENST00000489671		318	Atg/Gtg	0	
NOP14	8602		GRCh37	4	2964896	2964896	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_037																					ENST00000314262.6:c.151G>T	p.Asp51Tyr	p.D51Y	ENST00000314262	NM_003703.1	51	Gac/Tac	0	
CLNK	116449		GRCh37	4	10509647	10509647	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_037																					ENST00000226951.6:c.920A>C	p.Asn307Thr	p.N307T	ENST00000226951	NM_052964.2	307	aAt/aCt	0	
AASDH	132949		GRCh37	4	57211337	57211337	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_037																					ENST00000205214.6:c.2608T>C	p.Tyr870His	p.Y870H	ENST00000205214	NM_181806.2	870	Tac/Cac	0	
PTPN13	5783		GRCh37	4	87706441	87706441	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_037																					ENST00000411767.2:c.6176A>C	p.Gln2059Pro	p.Q2059P	ENST00000411767		2059	cAg/cCg	0	
RP11-766F14.2			GRCh37	4	100574797	100574797	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_037																					ENST00000511828.1:c.1009G>A	p.Gly337Arg	p.G337R	ENST00000511828		337	Gga/Aga	0	
RP11-766F14.2			GRCh37	4	100575355	100575355	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_037																					ENST00000511828.1:c.451G>A	p.Glu151Lys	p.E151K	ENST00000511828		151	Gag/Aag	0	
KIAA1109	84162		GRCh37	4	123270461	123270461	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_037																					ENST00000264501.4:c.13429G>C	p.Glu4477Gln	p.E4477Q	ENST00000264501		4477	Gag/Cag	0	
LRBA	987		GRCh37	4	151753074	151753074	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_037																					ENST00000357115.3:c.4624G>A	p.Val1542Ile	p.V1542I	ENST00000357115	NM_006726.4	1542	Gtt/Att	0	
ADCY2	108		GRCh37	5	7789843	7789843	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_037																					ENST00000338316.4:c.2558G>C	p.Arg853Pro	p.R853P	ENST00000338316	NM_020546.2	853	cGc/cCc	0	
ERBB2IP			GRCh37	5	65350438	65350438	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_037																					ENST00000284037.5:c.3292C>A	p.Gln1098Lys	p.Q1098K	ENST00000284037	NM_001253697.1	1098	Cag/Aag	0	
PCDHGA5	56110		GRCh37	5	140744597	140744597	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_037																					ENST00000518069.1:c.700G>A	p.Asp234Asn	p.D234N	ENST00000518069	NM_018918.2	234	Gac/Aac	0	
ZNF354A	6940		GRCh37	5	178152407	178152407	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_037																					ENST00000335815.2:c.226G>C	p.Glu76Gln	p.E76Q	ENST00000335815	NM_005649.2	76	Gag/Cag	0	
SCAND3			GRCh37	6	28542743	28542743	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_037																					ENST00000452236.2:c.1739A>G	p.Glu580Gly	p.E580G	ENST00000452236	NM_052923.1	580	gAg/gGg	0	
HSPA1A	3303		GRCh37	6	31785259	31785259	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_037																					ENST00000375651.5:c.1726G>C	p.Glu576Gln	p.E576Q	ENST00000375651	NM_005345.5	576	Gag/Cag	0	
HSPA1A	3303		GRCh37	6	31785445	31785445	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_037																					ENST00000375651.5:c.1912G>T	p.Glu638Ter	p.E638*	ENST00000375651	NM_005345.5	638	Gag/Tag	0	
BAI3			GRCh37	6	70071069	70071069	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_037																					ENST00000370598.1:c.3904A>G	p.Arg1302Gly	p.R1302G	ENST00000370598	NM_001704.2	1302	Aga/Gga	0	
EYA4	2070		GRCh37	6	133789779	133789779	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_037																					ENST00000367895.5:c.880A>G	p.Met294Val	p.M294V	ENST00000367895	NM_004100.4	294	Atg/Gtg	0	
ECT2L	345930		GRCh37	6	139164344	139164344	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_037																					ENST00000367682.2:c.571T>G	p.Trp191Gly	p.W191G	ENST00000367682	NM_001077706.2	191	Tgg/Ggg	0	
DACT2	168002		GRCh37	6	168709593	168709593	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_037																					ENST00000366795.3:c.844G>A	p.Val282Met	p.V282M	ENST00000366795	NM_214462.3	282	Gtg/Atg	0	
RSBN1L	222194		GRCh37	7	77379221	77379221	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_037																					ENST00000334955.8:c.1184C>G	p.Ser395Cys	p.S395C	ENST00000334955	NM_198467.2	395	tCt/tGt	0	
TRRAP	8295		GRCh37	7	98509697	98509697	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_037																					ENST00000359863.4:c.2060C>G	p.Thr687Arg	p.T687R	ENST00000359863	NM_001244580.1	687	aCg/aGg	0	
TMEM168	64418		GRCh37	7	112413100	112413100	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_037																					ENST00000312814.6:c.1282C>G	p.Gln428Glu	p.Q428E	ENST00000312814	NM_001287497.1	428	Cag/Gag	0	
TBXAS1	6916		GRCh37	7	139715632	139715632	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_037																					ENST00000336425.5:c.1336C>G	p.Pro446Ala	p.P446A	ENST00000336425		446	Cca/Gca	0	
PURG	29942		GRCh37	8	30890089	30890089	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_037																					ENST00000475541.1:c.210G>T	p.Lys70Asn	p.K70N	ENST00000475541	NM_013357.2	70	aaG/aaT	0	
GPR124			GRCh37	8	37699400	37699400	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_037																					ENST00000412232.2:c.3544G>T	p.Ala1182Ser	p.A1182S	ENST00000412232	NM_032777.9	1182	Gcg/Tcg	0	
POLB	5423		GRCh37	8	42214711	42214711	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_037																					ENST00000265421.4:c.447A>C	p.Arg149Ser	p.R149S	ENST00000265421	NM_002690.2	149	agA/agC	0	
SPIDR	23514		GRCh37	8	48614368	48614368	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_037																					ENST00000297423.4:c.1859A>T	p.Asp620Val	p.D620V	ENST00000297423	NM_001080394.2	620	gAc/gTc	0	
SPAG1	6674		GRCh37	8	101252736	101252736	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_037																					ENST00000251809.3:c.2386G>C	p.Glu796Gln	p.E796Q	ENST00000251809	NM_172218.2	796	Gag/Cag	0	
WISP1			GRCh37	8	134233039	134233039	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_037																					ENST00000250160.6:c.565G>T	p.Ala189Ser	p.A189S	ENST00000250160	NM_003882.3	189	Gcc/Tcc	0	
DMRTA1	63951		GRCh37	9	22447341	22447341	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_037																					ENST00000325870.2:c.277C>T	p.Arg93Trp	p.R93W	ENST00000325870	NM_022160.2	93	Cgg/Tgg	0	
C9orf43	257169		GRCh37	9	116183422	116183422	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_037																					ENST00000288462.4:c.385C>T	p.Pro129Ser	p.P129S	ENST00000288462	NM_152786.2	129	Cct/Tct	0	
C9orf43	257169		GRCh37	9	116183423	116183423	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_037																					ENST00000288462.4:c.386C>T	p.Pro129Leu	p.P129L	ENST00000288462	NM_152786.2	129	cCt/cTt	0	
LARP4B	23185		GRCh37	10	866786	866786	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BB01_037																					ENST00000316157.3:c.1485-1G>C		p.X495_splice	ENST00000316157	NM_015155.2	495		0	
SH3PXD2A	9644		GRCh37	10	105372677	105372677	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_037																					ENST00000369774.4:c.1191G>C	p.Arg397Ser	p.R397S	ENST00000369774		397	agG/agC	0	
MUC5AC	4586		GRCh37	11	1219493	1219493	+	splice_acceptor_variant,non_coding_transcript_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BB01_037																					ENST00000358378.6:n.2747-1G>A		p.X916_splice	ENST00000358378		916		0	
SMTNL1	219537		GRCh37	11	57310542	57310542	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_037																					ENST00000399154.2:c.427G>T	p.Glu143Ter	p.E143*	ENST00000399154		143	Gag/Tag	0	
RASGRP2	10235		GRCh37	11	64507122	64507122	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_037																					ENST00000354024.3:c.682G>T	p.Val228Phe	p.V228F	ENST00000354024	NM_153819.1	228	Gtc/Ttc	0	
PYGM	5837		GRCh37	11	64517923	64517923	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_037																					ENST00000164139.3:c.2102C>G	p.Ala701Gly	p.A701G	ENST00000164139	NM_005609.2	701	gCa/gGa	0	
LRP5	4041		GRCh37	11	68131310	68131310	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_037																					ENST00000294304.7:c.782A>G	p.His261Arg	p.H261R	ENST00000294304	NM_002335.2	261	cAt/cGt	0	
PHOX2A	401		GRCh37	11	71950824	71950824	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_037																					ENST00000298231.5:c.824C>T	p.Pro275Leu	p.P275L	ENST00000298231	NM_005169.3	275	cCc/cTc	0	
C2CD3	26005		GRCh37	11	73789348	73789348	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_037																					ENST00000334126.7:c.4415G>C	p.Arg1472Thr	p.R1472T	ENST00000334126	NM_001286577.1	1472	aGa/aCa	0	
IGSF9B	22997		GRCh37	11	133806018	133806018	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_037																					ENST00000321016.8:c.751C>G	p.Arg251Gly	p.R251G	ENST00000321016		251	Cgg/Ggg	0	
ACACB	32		GRCh37	12	109690848	109690848	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_037																					ENST00000338432.7:c.5930A>G	p.Asn1977Ser	p.N1977S	ENST00000338432		1977	aAc/aGc	0	
MTRF1	9617		GRCh37	13	41834953	41834953	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_037																					ENST00000379477.1:c.91A>G	p.Arg31Gly	p.R31G	ENST00000379477		31	Aga/Gga	0	
NEK3	4752		GRCh37	13	52728241	52728241	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_037																					ENST00000400357.2:c.185T>A	p.Ile62Asn	p.I62N	ENST00000400357		62	aTt/aAt	0	
TXNDC16	57544		GRCh37	14	52957708	52957708	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_037																					ENST00000281741.4:c.772G>T	p.Asp258Tyr	p.D258Y	ENST00000281741	NM_020784.2	258	Gat/Tat	0	
AREL1	9870		GRCh37	14	75150079	75150079	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_037																					ENST00000356357.4:c.401A>C	p.Lys134Thr	p.K134T	ENST00000356357	NM_001039479.1	134	aAg/aCg	0	
EMC7	56851		GRCh37	15	34388121	34388121	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_037																					ENST00000256545.4:c.331G>C	p.Asp111His	p.D111H	ENST00000256545	NM_020154.2	111	Gat/Cat	0	
CGNL1	84952		GRCh37	15	57745989	57745989	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_037																					ENST00000281282.5:c.2163G>C	p.Glu721Asp	p.E721D	ENST00000281282	NM_032866.4	721	gaG/gaC	0	
UBL7	84993		GRCh37	15	74748905	74748905	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_037																					ENST00000361351.4:c.292G>A	p.Asp98Asn	p.D98N	ENST00000361351	NM_201265.1	98	Gat/Aat	0	
ARNT2	9915		GRCh37	15	80873709	80873709	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_037																					ENST00000303329.4:c.1882G>A	p.Ala628Thr	p.A628T	ENST00000303329	NM_014862.3	628	Gcc/Acc	0	
CACNA1H	8912		GRCh37	16	1268651	1268651	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_037																					ENST00000348261.5:c.5887G>T	p.Gly1963Cys	p.G1963C	ENST00000348261	NM_021098.2	1963	Ggc/Tgc	0	
LINC00273	649159		GRCh37	16	33961062	33961062	+	non_coding_transcript_exon_variant	RNA	SNP	C	C	A			brca_smc_2018_BB01_037																					ENST00000539813.1:n.1442G>T		p.*481*	ENST00000539813				0	
CTCF	10664		GRCh37	16	67660506	67660506	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_037																					ENST00000264010.4:c.1406G>C	p.Cys469Ser	p.C469S	ENST00000264010	NM_006565.3	469	tGc/tCc	0	
KIAA0513	9764		GRCh37	16	85100838	85100838	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_037																					ENST00000258180.3:c.161A>G	p.Glu54Gly	p.E54G	ENST00000258180	NM_014732.2	54	gAg/gGg	0	
SPATA22	84690		GRCh37	17	3352160	3352160	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_037																					ENST00000397168.3:c.613C>A	p.Gln205Lys	p.Q205K	ENST00000397168	NM_032598.4	205	Caa/Aaa	0	
TP53	7157		GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_037																					ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc	0	
TOM1L2	146691		GRCh37	17	17783039	17783039	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_037																					ENST00000379504.3:c.679G>T	p.Glu227Ter	p.E227*	ENST00000379504	NM_001082968.1	227	Gaa/Taa	0	
ANKFN1	162282		GRCh37	17	54428147	54428147	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_037																					ENST00000318698.2:c.218C>T	p.Thr73Met	p.T73M	ENST00000318698	NM_153228.2	73	aCg/aTg	0	
MKS1	54903		GRCh37	17	56288382	56288382	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_037																					ENST00000393119.2:c.917C>A	p.Thr306Asn	p.T306N	ENST00000393119	NM_017777.3	306	aCt/aAt	0	
BZRAP1			GRCh37	17	56403762	56403762	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_037																					ENST00000343736.4:c.462G>C	p.Glu154Asp	p.E154D	ENST00000343736		154	gaG/gaC	0	
TEX14	56155		GRCh37	17	56663395	56663395	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_037																					ENST00000240361.8:c.2855T>G	p.Val952Gly	p.V952G	ENST00000240361		952	gTa/gGa	0	
ADCYAP1	116		GRCh37	18	907715	907715	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_037																					ENST00000450565.3:c.166T>A	p.Ser56Thr	p.S56T	ENST00000450565	NM_001099733.1	56	Tcg/Acg	0	
SMCHD1	23347		GRCh37	18	2707626	2707626	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_037																					ENST00000320876.6:c.2129C>G	p.Pro710Arg	p.P710R	ENST00000320876	NM_015295.2	710	cCt/cGt	0	
PHLPP1	23239		GRCh37	18	60646069	60646069	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_037																					ENST00000262719.5:c.4559C>T	p.Pro1520Leu	p.P1520L	ENST00000262719		1520	cCc/cTc	0	
PTPRS	5802		GRCh37	19	5211761	5211761	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_037																					ENST00000357368.4:c.5074G>C	p.Ala1692Pro	p.A1692P	ENST00000357368	NM_002850.3	1692	Gcc/Ccc	0	
C3	718		GRCh37	19	6702168	6702168	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_037																					ENST00000245907.6:c.2410A>G	p.Ile804Val	p.I804V	ENST00000245907	NM_000064.2	804	Att/Gtt	0	
ZNF844	284391		GRCh37	19	12186926	12186926	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_037																					ENST00000439326.3:c.991C>T	p.His331Tyr	p.H331Y	ENST00000439326	NM_001136501.1	331	Cac/Tac	0	
MYO9B	4650		GRCh37	19	17306189	17306189	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_037																					ENST00000594824.1:c.3953T>C	p.Leu1318Pro	p.L1318P	ENST00000594824		1318	cTg/cCg	0	
CHST8	64377		GRCh37	19	34263582	34263582	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_037																					ENST00000262622.4:c.889C>T	p.Arg297Trp	p.R297W	ENST00000262622	NM_022467.3	297	Cgg/Tgg	0	
NOVA2	4858		GRCh37	19	46443801	46443801	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_037																					ENST00000263257.5:c.799G>A	p.Ala267Thr	p.A267T	ENST00000263257	NM_002516.2	267	Gcg/Acg	0	
AC012313.1			GRCh37	19	58908035	58908035	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_037																					ENST00000601382.1:c.579C>A	p.Ser193Arg	p.S193R	ENST00000601382	NM_001195135.1	193	agC/agA	0	
ZNFX1	57169		GRCh37	20	47865259	47865259	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_037																					ENST00000371752.1:c.4302G>C	p.Lys1434Asn	p.K1434N	ENST00000371752		1434	aaG/aaC	0	
ZNFX1	57169		GRCh37	20	47874017	47874017	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_037																					ENST00000371752.1:c.2601G>A	p.Met867Ile	p.M867I	ENST00000371752		867	atG/atA	0	
ZNF217	7764		GRCh37	20	52192914	52192914	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_037																					ENST00000302342.3:c.2389C>G	p.Pro797Ala	p.P797A	ENST00000302342	NM_006526.2	797	Cct/Gct	0	
PHACTR3	116154		GRCh37	20	58381210	58381210	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_037																					ENST00000371015.1:c.1289G>T	p.Arg430Ile	p.R430I	ENST00000371015	NM_080672.4	430	aGa/aTa	0	
CDH4	1002		GRCh37	20	60448943	60448943	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_037																					ENST00000360469.5:c.1037G>T	p.Gly346Val	p.G346V	ENST00000360469	NM_001794.3	346	gGc/gTc	0	
TAF4	6874		GRCh37	20	60582631	60582631	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_037																					ENST00000252996.4:c.1946C>G	p.Pro649Arg	p.P649R	ENST00000252996	NM_003185.3	649	cCt/cGt	0	
PPP6R2	9701		GRCh37	22	50869687	50869687	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_037																					ENST00000216061.5:c.1211G>A	p.Arg404His	p.R404H	ENST00000216061		404	cGt/cAt	0	
SBF1	6305		GRCh37	22	50897988	50897988	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_037																					ENST00000380817.3:c.3599G>A	p.Gly1200Glu	p.G1200E	ENST00000380817	NM_002972.2	1200	gGg/gAg	0	
CHDC2			GRCh37	X	36103515	36103515	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_037																					ENST00000313548.4:c.501G>C	p.Lys167Asn	p.K167N	ENST00000313548	NM_173695.2	167	aaG/aaC	0	
MAGED1	9500		GRCh37	X	51644767	51644767	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_037																					ENST00000326587.7:c.2078G>A	p.Arg693His	p.R693H	ENST00000326587	NM_006986.3	693	cGc/cAc	0	
OPHN1	4983		GRCh37	X	67331744	67331744	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_037																					ENST00000355520.5:c.1478C>A	p.Pro493Gln	p.P493Q	ENST00000355520	NM_002547.2	493	cCa/cAa	0	
EFNB1	1947		GRCh37	X	68059513	68059513	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_037																					ENST00000204961.4:c.413C>G	p.Ser138Cys	p.S138C	ENST00000204961	NM_004429.4	138	tCc/tGc	0	
ZDHHC15	158866		GRCh37	X	74641705	74641705	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_037																					ENST00000373367.3:c.857G>T	p.Gly286Val	p.G286V	ENST00000373367	NM_144969.2	286	gGt/gTt	0	
DRP2	1821		GRCh37	X	100509532	100509532	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_037																					ENST00000395209.3:c.2096A>G	p.Glu699Gly	p.E699G	ENST00000395209	NM_001939.2	699	gAg/gGg	0	
MAGEA12	4111		GRCh37	X	151899897	151899897	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_037																					ENST00000357916.4:c.904C>T	p.Pro302Ser	p.P302S	ENST00000357916	NM_005367.5	302	Cca/Tca	0	
RCC1	1104		GRCh37	1	28863311	28863311	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_040																					ENST00000373832.1:c.990G>T	p.Glu330Asp	p.E330D	ENST00000373832	NM_001269.4	330	gaG/gaT	0	
HIST1H3B	8358		GRCh37	6	26031999	26031999	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_040																					ENST00000244661.2:c.290G>C	p.Cys97Ser	p.C97S	ENST00000244661	NM_003537.3	97	tGt/tCt	0	
TRIM56	81844		GRCh37	7	100731860	100731860	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_040																					ENST00000306085.6:c.1267A>G	p.Lys423Glu	p.K423E	ENST00000306085	NM_030961.1	423	Aaa/Gaa	0	
STAT1	6772		GRCh37	2	191851789	191851789	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_008																					ENST00000361099.3:c.1103T>C	p.Val368Ala	p.V368A	ENST00000361099	NM_007315.3	368	gTg/gCg	0	
ROBO2	6092		GRCh37	3	77623761	77623761	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_008																					ENST00000461745.1:c.2083C>T	p.Arg695Ter	p.R695*	ENST00000461745	NM_002942.4	695	Cga/Tga	0	
SLC9C1	285335		GRCh37	3	111919598	111919598	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_008																					ENST00000305815.5:c.2334G>T	p.Lys778Asn	p.K778N	ENST00000305815	NM_183061.1	778	aaG/aaT	0	
UGT2B7	7364		GRCh37	4	69973943	69973943	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_008																					ENST00000305231.7:c.1213C>T	p.His405Tyr	p.H405Y	ENST00000305231	NM_001074.2	405	Cac/Tac	0	
IRX2	153572		GRCh37	5	2748732	2748732	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_008																					ENST00000302057.5:c.1090G>A	p.Gly364Arg	p.G364R	ENST00000302057	NM_033267.4	364	Ggg/Agg	0	
FTMT	94033		GRCh37	5	121187738	121187738	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_008																					ENST00000321339.1:c.80C>T	p.Ala27Val	p.A27V	ENST00000321339	NM_177478.1	27	gCg/gTg	0	
PCDHAC2	56134		GRCh37	5	140347294	140347294	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_008																					ENST00000289269.5:c.943G>A	p.Gly315Arg	p.G315R	ENST00000289269	NM_018899.5	315	Ggg/Agg	0	
MEOX2	4223		GRCh37	7	15725552	15725552	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_008																					ENST00000262041.5:c.476C>T	p.Ala159Val	p.A159V	ENST00000262041	NM_005924.4	159	gCg/gTg	0	
PARP12	64761		GRCh37	7	139734036	139734036	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_008																					ENST00000263549.3:c.1420T>A	p.Cys474Ser	p.C474S	ENST00000263549	NM_022750.2	474	Tgc/Agc	0	
NOS3	4846		GRCh37	7	150695701	150695701	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_008																					ENST00000297494.3:c.749G>A	p.Arg250His	p.R250H	ENST00000297494	NM_000603.4	250	cGc/cAc	0	
SMARCD3	6604		GRCh37	7	150939616	150939616	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_008																					ENST00000262188.8:c.530G>A	p.Gly177Asp	p.G177D	ENST00000262188	NM_001003801.1	177	gGc/gAc	0	
A2ML1	144568		GRCh37	12	9002776	9002776	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_008																					ENST00000299698.7:c.2140G>A	p.Ala714Thr	p.A714T	ENST00000299698	NM_144670.4	714	Gct/Act	0	
RASGRF1	5923		GRCh37	15	79327528	79327528	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_008																					ENST00000419573.3:c.903G>T	p.Gln301His	p.Q301H	ENST00000419573	NM_002891.4	301	caG/caT	0	
RBFOX1	54715		GRCh37	16	7629824	7629824	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_008																					ENST00000547338.1:c.316C>A	p.Pro106Thr	p.P106T	ENST00000547338	NM_001142334.1	106	Cct/Act	0	
TP53	7157		GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_008																					ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga	0	
VTN	7448		GRCh37	17	26694944	26694944	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_008																					ENST00000226218.4:c.1116G>C	p.Arg372Ser	p.R372S	ENST00000226218	NM_000638.3	372	agG/agC	0	
GZF1	64412		GRCh37	20	23349531	23349531	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_008																					ENST00000338121.5:c.1592G>A	p.Arg531Gln	p.R531Q	ENST00000338121		531	cGg/cAg	0	
ADAMTS5	11096		GRCh37	21	28315722	28315722	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_008																					ENST00000284987.5:c.1382C>G	p.Thr461Arg	p.T461R	ENST00000284987	NM_007038.3	461	aCa/aGa	0	
YIPF6	286451		GRCh37	X	67731754	67731754	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_008																					ENST00000462683.1:c.121C>A	p.Pro41Thr	p.P41T	ENST00000462683	NM_173834.3	41	Cct/Act	0	
C1orf141	400757		GRCh37	1	67581111	67581111	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_049																					ENST00000371006.1:c.270G>T	p.Lys90Asn	p.K90N	ENST00000371006		90	aaG/aaT	0	
AC018816.3			GRCh37	3	4872662	4872662	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_049																					ENST00000449914.1:c.85A>G	p.Ile29Val	p.I29V	ENST00000449914		29	Atc/Gtc	0	
SMARCC1	6599		GRCh37	3	47632325	47632325	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_049																					ENST00000254480.5:c.3046C>G	p.Gln1016Glu	p.Q1016E	ENST00000254480	NM_003074.3	1016	Cag/Gag	0	
TPBG	7162		GRCh37	6	83074881	83074881	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_049																					ENST00000369750.3:c.203G>A	p.Cys68Tyr	p.C68Y	ENST00000369750		68	tGc/tAc	0	
MLXIPL	51085		GRCh37	7	73038555	73038555	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_049																					ENST00000313375.3:c.268T>C	p.Phe90Leu	p.F90L	ENST00000313375	NM_032953.2	90	Ttc/Ctc	0	
ATF7	11016		GRCh37	12	53925590	53925590	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_049																					ENST00000548446.2:c.898C>A	p.Arg300Ser	p.R300S	ENST00000548446		300	Cgc/Agc	0	
HECTD1	25831		GRCh37	14	31641087	31641087	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_049																					ENST00000399332.1:c.1312G>T	p.Gly438Ter	p.G438*	ENST00000399332	NM_015382.2	438	Gga/Tga	0	
STARD9	57519		GRCh37	15	42978209	42978209	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_049																					ENST00000290607.7:c.4433G>A	p.Ser1478Asn	p.S1478N	ENST00000290607	NM_020759.2	1478	aGc/aAc	0	
TMEM57			GRCh37	1	25815681	25815681	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_024																					ENST00000374343.4:c.1514C>T	p.Thr505Ile	p.T505I	ENST00000374343	NM_018202.4	505	aCc/aTc	0	
DLEC1	9940		GRCh37	3	38103695	38103695	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_024																					ENST00000308059.6:c.709A>T	p.Ser237Cys	p.S237C	ENST00000308059		237	Agc/Tgc	0	
MSL2	55167		GRCh37	3	135870281	135870281	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_024																					ENST00000309993.2:c.1442G>A	p.Cys481Tyr	p.C481Y	ENST00000309993	NM_018133.3	481	tGc/tAc	0	
DHX15	1665		GRCh37	4	24578246	24578246	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_024																					ENST00000336812.4:c.127G>T	p.Glu43Ter	p.E43*	ENST00000336812	NM_001358.2	43	Gaa/Taa	0	
PRUNE2	158471		GRCh37	9	79323949	79323949	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_024																					ENST00000376718.3:c.3241G>A	p.Asp1081Asn	p.D1081N	ENST00000376718	NM_015225.2	1081	Gac/Aac	0	
COL17A1	1308		GRCh37	10	105837275	105837275	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_024																					ENST00000353479.5:c.107C>G	p.Thr36Ser	p.T36S	ENST00000353479	NM_000494.3	36	aCc/aGc	0	
TP53	7157		GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_024																					ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt	0	
SUZ12	23512		GRCh37	17	30302521	30302521	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_024																					ENST00000322652.5:c.612G>T	p.Arg204Ser	p.R204S	ENST00000322652	NM_015355.2	204	agG/agT	0	
ERN1	2081		GRCh37	17	62126540	62126540	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_024																					ENST00000433197.3:c.2276C>T	p.Ser759Phe	p.S759F	ENST00000433197	NM_001433.3	759	tCt/tTt	0	
PNKD	25953		GRCh37	2	219136158	219136158	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_011																					ENST00000273077.4:c.122T>A	p.Leu41Gln	p.L41Q	ENST00000273077	NM_015488.4	41	cTg/cAg	0	
BBS9	27241		GRCh37	7	33303922	33303922	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_011																					ENST00000242067.6:c.638C>G	p.Ala213Gly	p.A213G	ENST00000242067	NM_198428.2	213	gCa/gGa	0	
TMEM213	155006		GRCh37	7	138482878	138482878	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_011																					ENST00000442682.2:c.29C>T	p.Ala10Val	p.A10V	ENST00000442682	NM_001085429.1	10	gCc/gTc	0	
ZNF19	7567		GRCh37	16	71509350	71509350	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_011																					ENST00000288177.5:c.1100G>A	p.Ser367Asn	p.S367N	ENST00000288177	NM_006961.3	367	aGt/aAt	0	
ALOX12B	242		GRCh37	17	7990662	7990662	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_011																					ENST00000319144.4:c.99C>A	p.Ser33Arg	p.S33R	ENST00000319144	NM_001139.2	33	agC/agA	0	
RYR1	6261		GRCh37	19	39062846	39062846	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_011																					ENST00000359596.3:c.13934G>A	p.Arg4645Gln	p.R4645Q	ENST00000359596		4645	cGg/cAg	0	
NLRP13	126204		GRCh37	19	56424425	56424425	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_011																					ENST00000342929.3:c.758C>A	p.Ala253Glu	p.A253E	ENST00000342929	NM_176810.2	253	gCa/gAa	0	
CDC25B	994		GRCh37	20	3778307	3778307	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_011																					ENST00000245960.5:c.239G>T	p.Arg80Leu	p.R80L	ENST00000245960	NM_021873.2	80	cGc/cTc	0	
LHX2	9355		GRCh37	9	126794734	126794735	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BB01_006																					ENST00000373615.4:c.971dup	p.Asn324LysfsTer49	p.N324Kfs*49	ENST00000373615	NM_004789.3	323	-/A	0	
OSBPL5	114879		GRCh37	11	3122880	3122883	+	frameshift_variant	Frame_Shift_Del	DEL	TCCT	TCCT	-			brca_smc_2018_BB01_006																					ENST00000263650.7:c.1472_1475del	p.Lys491ThrfsTer33	p.K491Tfs*33	ENST00000263650	NM_020896.3	491	aAGGAc/ac	0	
OTOGL	283310		GRCh37	12	80671964	80671964	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BB01_006																					ENST00000547103.1:c.2672del	p.Gly891GlufsTer23	p.G891Efs*23	ENST00000547103		891	Gga/ga	0	
FLG	2312		GRCh37	1	152287817	152287818	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BB01_047																					ENST00000368799.1:c.116dup	p.Glu40GlyfsTer11	p.E40Gfs*11	ENST00000368799	NM_002016.1	39	aag/aAag	0	
MARCKS	4082		GRCh37	6	114181210	114181210	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BB01_047																					ENST00000368635.4:c.464del	p.Lys155ArgfsTer12	p.K155Rfs*12	ENST00000368635	NM_002356.5	152	Aaa/aa	0	
LINC00273	649159		GRCh37	16	33961944	33961945	+	non_coding_transcript_exon_variant	RNA	INS	-	-	G			brca_smc_2018_BB01_047																					ENST00000539813.1:n.560dup		p.*187*	ENST00000539813				0	
ZC3H4	23211		GRCh37	19	47597309	47597309	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BB01_047																					ENST00000253048.5:c.410del	p.Ser137LeufsTer88	p.S137Lfs*88	ENST00000253048	NM_015168.1	137	tCt/tt	0	
MXRA5	25878		GRCh37	X	3238744	3238747	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			brca_smc_2018_BB01_047																					ENST00000217939.6:c.4979_4982del	p.Lys1660SerfsTer98	p.K1660Sfs*98	ENST00000217939	NM_015419.3	1660	aAACAg/ag	0	
CNTN3	5067		GRCh37	3	74418369	74418370	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BB01_010																					ENST00000263665.6:c.917dup	p.Asn306LysfsTer75	p.N306Kfs*75	ENST00000263665	NM_020872.1	306	aat/aAat	0	
PDE4D	5144		GRCh37	5	58285728	58285729	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BB01_010																					ENST00000340635.6:c.1306dup	p.Thr436AsnfsTer3	p.T436Nfs*3	ENST00000340635	NM_001104631.1	435	-/A	0	
LMTK2	22853		GRCh37	7	97736519	97736521	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			brca_smc_2018_BB01_010																					ENST00000297293.5:c.46_48del	p.Leu16del	p.L16del	ENST00000297293	NM_014916.3	10	agGCTg/agg	0	
PTEN	5728		GRCh37	10	89624295	89624296	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BB01_010																					ENST00000371953.3:c.69dup	p.Asp24ArgfsTer20	p.D24Rfs*20	ENST00000371953	NM_000314.4	23	-/A	0	
RGAG1			GRCh37	X	109697416	109697417	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			brca_smc_2018_BB01_010																					ENST00000465301.2:c.3574_3575del	p.Leu1192SerfsTer22	p.L1192Sfs*22	ENST00000465301	NM_020769.2	1191	TCt/t	0	
GATA3	2625		GRCh37	10	8111500	8111501	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			brca_smc_2018_BB01_027																					ENST00000346208.3:c.987dup	p.Arg330GlufsTer22	p.R330Efs*22	ENST00000346208		329	agg/agGg	0	
SALL4	57167		GRCh37	20	50407022	50407022	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BB01_027																					ENST00000217086.4:c.2000del	p.Gly667ValfsTer5	p.G667Vfs*5	ENST00000217086	NM_020436.3	667	gGt/gt	0	
KCNJ2	3759		GRCh37	17	68172171	68172172	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BB01_029																					ENST00000243457.3:c.993dup	p.Glu332Ter	p.E332*	ENST00000243457	NM_000891.2	331	ttt/tTtt	0	
TP53	7157		GRCh37	17	7577062	7577062	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BB01_015																					ENST00000269305.4:c.876del	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	292	aaA/aa	0	
GRM7	2917		GRCh37	3	7621013	7621013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BB01_039																					ENST00000357716.4:c.2427del	p.Phe809LeufsTer21	p.F809Lfs*21	ENST00000357716	NM_000844.3	807	aTt/at	0	
TOPBP1	11073		GRCh37	3	133341982	133341984	+	inframe_deletion	In_Frame_Del	DEL	TTA	TTA	-			brca_smc_2018_BB01_039																					ENST00000260810.5:c.3129_3131del	p.Asn1043del	p.N1043del	ENST00000260810	NM_007027.3	1043	aaTAAa/aaa	0	
AKAP9	10142		GRCh37	7	91641804	91641805	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			brca_smc_2018_BB01_039																					ENST00000356239.3:c.3380_3381del	p.His1127ArgfsTer6	p.H1127Rfs*6	ENST00000356239	NM_147185.2	1127	cAT/c	0	
C5	727		GRCh37	9	123808538	123808538	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BB01_039																					ENST00000223642.1:c.189del	p.Lys63AsnfsTer23	p.K63Nfs*23	ENST00000223642	NM_001735.2	63	aaA/aa	0	
PEG10	23089		GRCh37	7	94293001	94293002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BB01_028																					ENST00000482108.1:c.133dup	p.Arg45ProfsTer9	p.R45Pfs*9	ENST00000482108	NM_001172437.1	45	cga/cCga	0	
ZFPM1	161882		GRCh37	16	88600076	88600076	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BB01_028																					ENST00000319555.3:c.1713del	p.Ala573ProfsTer225	p.A573Pfs*225	ENST00000319555	NM_153813.2	570	ttC/tt	0	
MICAL3	57553		GRCh37	22	18383678	18383679	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			brca_smc_2018_BB01_028																					ENST00000441493.2:c.776_777del	p.Lys259SerfsTer26	p.K259Sfs*26	ENST00000441493	NM_015241.2	259	aAA/a	0	
TICRR	90381		GRCh37	15	90143884	90143885	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BB01_040																					ENST00000268138.7:c.2127dup	p.Leu710ThrfsTer3	p.L710Tfs*3	ENST00000268138		707	-/A	0	
CBFB	865		GRCh37	16	67100678	67100679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			brca_smc_2018_BB01_036																					ENST00000290858.6:c.376_377insGA	p.Glu126GlyfsTer14	p.E126Gfs*14	ENST00000290858	NM_001755.2	126	gag/gGAag	0	
ASXL1	171023		GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BB01_036																					ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg	0	
DUSP1	1843		GRCh37	5	172196649	172196650	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTGT			brca_smc_2018_BB01_034																					ENST00000239223.3:c.662_663insCAAA	p.Lys221AsnfsTer23	p.K221Nfs*23	ENST00000239223	NM_004417.3	221	aag/aACAAag	0	
HAP1	9001		GRCh37	17	39888591	39888592	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			brca_smc_2018_BB01_034																					ENST00000310778.5:c.604_605insAG	p.Arg202LysfsTer4	p.R202Kfs*4	ENST00000310778		202	agg/aAGgg	0	
PDIK1L	149420		GRCh37	1	26448379	26448381	+	inframe_deletion	In_Frame_Del	DEL	TAT	TAT	-			brca_smc_2018_BB01_045																					ENST00000374269.1:c.341_343del	p.Tyr114del	p.Y114del	ENST00000374269		113	TAT/-	0	
LRIF1	55791		GRCh37	1	111506271	111506275	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCG	CTGCG	-			brca_smc_2018_BB01_045																					ENST00000369763.4:c.36_40del	p.Ala13GlyfsTer36	p.A13Gfs*36	ENST00000369763	NM_018372.3	12	ccCGCAGag/ccag	0	
GLRA3	8001		GRCh37	4	175649663	175649663	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BB01_045																					ENST00000274093.3:c.454del	p.Arg152GlufsTer12	p.R152Efs*12	ENST00000274093	NM_006529.2	152	Aga/ga	0	
CCNYL2	414194		GRCh37	10	42920794	42920795	+	non_coding_transcript_exon_variant	RNA	INS	-	-	TAA			brca_smc_2018_BB01_045																					ENST00000483242.3:n.927_928insTAT		p.*309*	ENST00000483242				0	
MMS22L	253714		GRCh37	6	97634438	97634442	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAA	GAAAA	-			brca_smc_2018_BB01_009																					ENST00000275053.4:c.2164_2168del	p.Phe722IlefsTer54	p.F722Ifs*54	ENST00000275053	NM_198468.2	722	TTTTCa/a	0	
KMT2C	58508		GRCh37	7	152055689	152055690	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			brca_smc_2018_BB01_009																					ENST00000262189.6:c.232_233del	p.Glu78AsnfsTer17	p.E78Nfs*17	ENST00000262189	NM_170606.2	78	GAa/a	0	
MDGA2	161357		GRCh37	14	47324331	47324332	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			brca_smc_2018_BB01_009																					ENST00000399232.2:c.2571_2572del	p.Lys858ArgfsTer16	p.K858Rfs*16	ENST00000399232	NM_001113498.2	857	ttGAaa/ttaa	0	
PIK3CA	5290		GRCh37	3	178952150	178952151	+	frameshift_variant,stop_lost	Frame_Shift_Ins	INS	-	-	TTTT			brca_smc_2018_BB01_002																					ENST00000263967.3:c.3205_3206insTTTT	p.Ter1069PhefsTer5	p.*1069Ffs*5	ENST00000263967	NM_006218.2	1069	tga/tTTTTga	0	
TCF7	6932		GRCh37	5	133451680	133451681	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BB01_002																					ENST00000342854.5:c.402dup	p.Ser135LeufsTer57	p.S135Lfs*57	ENST00000342854	NM_003202.3	133	ccc/cCcc	0	
GATA3	2625		GRCh37	10	8111543	8111544	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BB01_007																					ENST00000346208.3:c.1029dup	p.Tyr344LeufsTer8	p.Y344Lfs*8	ENST00000346208		343	-/C	0	
CCDC176			GRCh37	14	74522382	74522384	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			brca_smc_2018_BB01_007																					ENST00000394009.3:c.1384_1386del	p.Ser462del	p.S462del	ENST00000394009	NM_025057.2	461	cCTTct/cct	0	
NRN1L	123904		GRCh37	16	67918840	67918841	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGCAACCACCCCATG			brca_smc_2018_BB01_007																					ENST00000339176.3:c.34_35insCGGCAACCACCCCATG	p.Arg12ProfsTer37	p.R12Pfs*37	ENST00000339176	NM_198443.1	12	cgg/cCGGCAACCACCCCATGgg	0	
CCDC73	493860		GRCh37	11	32635850	32635850	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BB01_041																					ENST00000335185.5:c.2014del	p.Ser672ValfsTer22	p.S672Vfs*22	ENST00000335185	NM_001008391.3	672	Agt/gt	0	
PLA2G1B	5319		GRCh37	12	120763796	120763797	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			brca_smc_2018_BB01_041																					ENST00000308366.4:c.62dup	p.Arg22SerfsTer18	p.R22Sfs*18	ENST00000308366	NM_000928.2	21	cct/cCct	0	
FOPNL	123811		GRCh37	16	15977909	15977909	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BB01_041																					ENST00000255759.6:c.182del	p.Leu61Ter	p.L61*	ENST00000255759	NM_144600.2	61	tTa/ta	0	
VEZF1	7716		GRCh37	17	56056587	56056588	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGT			brca_smc_2018_BB01_041																					ENST00000581208.1:c.1064_1065insCAA	p.His355_Val356insAsn	p.H355_V356insN	ENST00000581208	NM_007146.2	355	cat/cACAat	0	
SYCP1	6847		GRCh37	1	115469134	115469134	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BB01_018																					ENST00000369518.1:c.1884del	p.Gly629ValfsTer8	p.G629Vfs*8	ENST00000369518		626	Aaa/aa	0	
PCDH17	27253		GRCh37	13	58299174	58299174	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BB01_018																					ENST00000377918.3:c.3226del	p.Ser1076ValfsTer64	p.S1076Vfs*64	ENST00000377918	NM_001040429.2	1076	Agt/gt	0	
PTPRN2	5799		GRCh37	7	158380321	158380322	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGCAGCAGT			brca_smc_2018_BB01_008																					ENST00000389418.4:c.40_41insACTGCTGCT	p.Leu13_Leu14insHisCysCys	p.L13_L14insHCC	ENST00000389418	NM_002847.3	14	ctg/cACTGCTGCTtg	0	
MLLT10	8028		GRCh37	10	21906099	21906102	+	frameshift_variant	Frame_Shift_Del	DEL	CTCA	CTCA	-			brca_smc_2018_BB01_008																					ENST00000307729.7:c.665_668del	p.His222LeufsTer37	p.H222Lfs*37	ENST00000307729		221	tCTCAc/tc	0	
FANCM	57697		GRCh37	14	45639832	45639834	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			brca_smc_2018_BB01_008																					ENST00000267430.5:c.2050_2052del	p.Glu684del	p.E684del	ENST00000267430	NM_020937.2	681	tcAGAa/tca	0	
ARID1A	8289		GRCh37	1	27106298	27106298	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BB01_023																					ENST00000324856.7:c.5910del	p.Leu1971TrpfsTer44	p.L1971Wfs*44	ENST00000324856	NM_006015.4	1970	cTt/ct	0	
HIST1H1E	3008		GRCh37	6	26156678	26156680	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			brca_smc_2018_BB01_023																					ENST00000304218.3:c.67_69del	p.Lys23del	p.K23del	ENST00000304218	NM_005321.2	20	gtGAAg/gtg	0	
SEC63	11231		GRCh37	6	108214755	108214755	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BB01_023																					ENST00000369002.4:c.1605del	p.Lys535AsnfsTer28	p.K535Nfs*28	ENST00000369002	NM_007214.4	535	aaA/aa	0	
GATA3	2625		GRCh37	10	8100419	8100420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BB01_023																					ENST00000346208.3:c.393_394insT	p.Val132CysfsTer171	p.V132Cfs*171	ENST00000346208		131	-/T	0	
DOCK9	23348		GRCh37	13	99540449	99540450	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BB01_037																					ENST00000376460.1:c.2006dup	p.Lys670GlnfsTer5	p.K670Qfs*5	ENST00000376460	NM_015296.2	669	ttc/tTtc	0	
MAML3	55534		GRCh37	4	140811082	140811083	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TGT			brca_smc_2018_BB01_004																					ENST00000509479.2:c.1508_1509insCAA	p.Gln503delinsHisLys	p.Q503delinsHK	ENST00000509479	NM_018717.4	503	cag/cACAag	0	
MAML3	55534		GRCh37	4	140811082	140811083	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TGT			brca_smc_2018_BB01_016																					ENST00000509479.2:c.1508_1509insCAA	p.Gln503delinsHisLys	p.Q503delinsHK	ENST00000509479	NM_018717.4	503	cag/cACAag	0	
NIPBL	25836		GRCh37	5	37061003	37061004	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			brca_smc_2018_BB01_016																					ENST00000282516.8:c.7743_7744del	p.Asn2581LysfsTer19	p.N2581Kfs*19	ENST00000282516	NM_133433.3	2581	aaCCga/aaga	0	
VEGFA	7422		GRCh37	6	43748528	43748530	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			brca_smc_2018_BB01_017																					ENST00000523873.1:c.482_484del	p.Lys161_Ser162delinsThr	p.K161_S162delinsT	ENST00000523873		161	aAGTcc/acc	0	
NFE2L3	9603		GRCh37	7	26225179	26225180	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			brca_smc_2018_BB01_017																					ENST00000056233.3:c.1861_1862del	p.Lys621GlufsTer7	p.K621Efs*7	ENST00000056233	NM_004289.6	621	AAg/g	0	
CBFB	865		GRCh37	16	67070624	67070624	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BB01_017																					ENST00000290858.6:c.248del	p.Arg83GlnfsTer6	p.R83Qfs*6	ENST00000290858	NM_001755.2	83	cGa/ca	0	
NIPBL	25836		GRCh37	5	37049270	37049271	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BB01_035																					ENST00000282516.8:c.6821dup	p.Met2274IlefsTer3	p.M2274Ifs*3	ENST00000282516	NM_133433.3	2274	atg/atTg	0	
CBX5	23468		GRCh37	12	54635553	54635556	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			brca_smc_2018_BB01_035																					ENST00000209875.4:c.559_562del	p.Glu187GlnfsTer113	p.E187Qfs*113	ENST00000209875	NM_012117.2	187	GAAAca/ca	0	
MORC1	27136		GRCh37	3	108705750	108705750	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BB01_049																					ENST00000232603.5:c.2234del	p.Lys745ArgfsTer6	p.K745Rfs*6	ENST00000232603	NM_014429.3	745	aAg/ag	0	
TOR1AIP1	26092		GRCh37	1	179851714	179851714	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_014																					ENST00000606911.2:c.77G>A	p.Arg26Gln	p.R26Q	ENST00000606911		26	cGa/cAa	0	
HMCN1	83872		GRCh37	1	186121944	186121944	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_014																					ENST00000271588.4:c.14959G>C	p.Asp4987His	p.D4987H	ENST00000271588	NM_031935.2	4987	Gat/Cat	0	
NAV1	89796		GRCh37	1	201777909	201777909	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_014																					ENST00000367296.4:c.4117C>A	p.Gln1373Lys	p.Q1373K	ENST00000367296	NM_020443.4	1373	Cag/Aag	0	
CCDC142	84865		GRCh37	2	74702518	74702518	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_014																					ENST00000393965.3:c.1630G>A	p.Ala544Thr	p.A544T	ENST00000393965	NM_032779.3	544	Gct/Act	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_014																					ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt	0	
H2AFV	94239		GRCh37	7	44882922	44882922	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_014																					ENST00000308153.4:c.35A>G	p.Lys12Arg	p.K12R	ENST00000308153	NM_012412.4	12	aAg/aGg	0	
ADARB2	105		GRCh37	10	1230888	1230888	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_014																					ENST00000381312.1:c.1956C>G	p.Asn652Lys	p.N652K	ENST00000381312	NM_018702.3	652	aaC/aaG	0	
MYPN	84665		GRCh37	10	69909843	69909843	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_014																					ENST00000358913.5:c.1292T>C	p.Ile431Thr	p.I431T	ENST00000358913	NM_032578.3	431	aTc/aCc	0	
OR5D16	390144		GRCh37	11	55606904	55606904	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_014																					ENST00000378396.1:c.677C>A	p.Thr226Asn	p.T226N	ENST00000378396	NM_001005496.1	226	aCc/aAc	0	
EED	8726		GRCh37	11	85977179	85977179	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_014																					ENST00000263360.6:c.781A>C	p.Lys261Gln	p.K261Q	ENST00000263360	NM_003797.3	261	Aaa/Caa	0	
ABCC4	10257		GRCh37	13	95726554	95726554	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_014																					ENST00000376887.4:c.2831C>G	p.Thr944Arg	p.T944R	ENST00000376887	NM_005845.3	944	aCg/aGg	0	
VMAC	400673		GRCh37	19	5904999	5904999	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_014																					ENST00000339485.3:c.98C>T	p.Ala33Val	p.A33V	ENST00000339485	NM_001017921.3	33	gCg/gTg	0	
RGAG1			GRCh37	X	109696711	109696711	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_014																					ENST00000465301.2:c.2866G>T	p.Ala956Ser	p.A956S	ENST00000465301	NM_020769.2	956	Gcc/Tcc	0	
HYI	81888		GRCh37	1	43917932	43917932	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR212																					ENST00000372425.4:c.370G>A	p.Glu124Lys	p.E124K	ENST00000372425		124	Gag/Aag	0	
ARHGAP29	9411		GRCh37	1	94649730	94649730	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR212																					ENST00000260526.6:c.2224G>A	p.Val742Ile	p.V742I	ENST00000260526	NM_004815.3	742	Gtc/Atc	0	
NES	10763		GRCh37	1	156642707	156642707	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR212																					ENST00000368223.3:c.1273C>G	p.Pro425Ala	p.P425A	ENST00000368223	NM_006617.1	425	Cca/Gca	0	
NEK2	4751		GRCh37	1	211846992	211846992	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR212																					ENST00000366999.4:c.388C>T	p.Arg130Ter	p.R130*	ENST00000366999	NM_002497.3	130	Cga/Tga	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR212																					ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt	0	
TMEM63B	55362		GRCh37	6	44119732	44119732	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR212																					ENST00000259746.9:c.1823G>A	p.Arg608His	p.R608H	ENST00000259746		608	cGc/cAc	0	
DPP6	1804		GRCh37	7	154429569	154429569	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR212																					ENST00000377770.3:c.666C>A	p.Ser222Arg	p.S222R	ENST00000377770		222	agC/agA	0	
ZFHX4	79776		GRCh37	8	77767481	77767481	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR212																					ENST00000521891.2:c.8324C>T	p.Ala2775Val	p.A2775V	ENST00000521891	NM_024721.4	2775	gCa/gTa	0	
FAM92A1			GRCh37	8	94738697	94738697	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR212																					ENST00000518322.1:c.733C>A	p.Leu245Ile	p.L245I	ENST00000518322	NM_145269.3	245	Ctt/Att	0	
FER1L6	654463		GRCh37	8	125061902	125061902	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR212																					ENST00000399018.1:c.2779G>A	p.Asp927Asn	p.D927N	ENST00000399018		927	Gac/Aac	0	
OR10A4	283297		GRCh37	11	6898629	6898629	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR212																					ENST00000379829.2:c.751C>A	p.Leu251Ile	p.L251I	ENST00000379829	NM_207186.2	251	Ctc/Atc	0	
FBXO3	26273		GRCh37	11	33763567	33763567	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR212																					ENST00000265651.3:c.1303G>A	p.Glu435Lys	p.E435K	ENST00000265651	NM_012175.3	435	Gag/Aag	0	
NDUFS3	4722		GRCh37	11	47600865	47600865	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR212																					ENST00000263774.4:c.112A>G	p.Ser38Gly	p.S38G	ENST00000263774	NM_004551.2	38	Agc/Ggc	0	
NFRKB	4798		GRCh37	11	129754709	129754709	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR212																					ENST00000446488.3:c.673C>T	p.Arg225Cys	p.R225C	ENST00000446488	NM_001143835.1	225	Cgt/Tgt	0	
ATP12A	479		GRCh37	13	25285514	25285514	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR212																					ENST00000381946.3:c.3058G>A	p.Val1020Met	p.V1020M	ENST00000381946		1020	Gtg/Atg	0	
TP53	7157		GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR212																					ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc	0	
MTMR4	9110		GRCh37	17	56573668	56573668	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR212																					ENST00000323456.5:c.1835A>T	p.Asp612Val	p.D612V	ENST00000323456	NM_004687.4	612	gAt/gTt	0	
RUNX1	861		GRCh37	21	36421196	36421196	+	start_lost	Translation_Start_Site	SNP	T	T	C			brca_smc_2018_BR212																					ENST00000300305.3:c.1A>G	p.Met1?	p.M1?	ENST00000300305		1	Atg/Gtg	0	
FAM9A	171482		GRCh37	X	8766488	8766488	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			brca_smc_2018_BR212																					ENST00000381003.3:c.253A>T	p.Arg85Ter	p.R85*	ENST00000381003	NM_174951.3	85	Aga/Tga	0	
CTAG2	30848		GRCh37	X	153880607	153880607	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR212																					ENST00000247306.4:c.568G>A	p.Gly190Arg	p.G190R	ENST00000247306	NM_020994.3	190	Gga/Aga	0	
WDR33	55339		GRCh37	2	128480907	128480907	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR418																					ENST00000322313.4:c.1211G>A	p.Arg404Gln	p.R404Q	ENST00000322313	NM_018383.4	404	cGa/cAa	0	
MLLT4			GRCh37	6	168344719	168344719	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR418																					ENST00000447894.2:c.3317C>G	p.Pro1106Arg	p.P1106R	ENST00000447894		1106	cCa/cGa	0	
ZHX2	22882		GRCh37	8	123964663	123964663	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR418																					ENST00000314393.4:c.913C>G	p.His305Asp	p.H305D	ENST00000314393	NM_014943.3	305	Cac/Gac	0	
CDC14B	8555		GRCh37	9	99324974	99324974	+	splice_donor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BR418																					ENST00000375241.1:c.420+1G>C		p.X140_splice	ENST00000375241	NM_003671.3	140		0	
PLCH2	9651		GRCh37	1	2420809	2420809	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_086																					ENST00000378486.3:c.1399C>T	p.Leu467Phe	p.L467F	ENST00000378486	NM_014638.2	467	Ctc/Ttc	0	
UBE4B	10277		GRCh37	1	10231381	10231381	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_086																					ENST00000343090.6:c.3519C>G	p.Asp1173Glu	p.D1173E	ENST00000343090	NM_001105562.2	1173	gaC/gaG	0	
KCNJ3	3760		GRCh37	2	155555802	155555802	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_086																					ENST00000295101.2:c.515T>C	p.Val172Ala	p.V172A	ENST00000295101	NM_002239.3	172	gTg/gCg	0	
SGPP2	130367		GRCh37	2	223339305	223339305	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_086																					ENST00000321276.7:c.238G>A	p.Val80Ile	p.V80I	ENST00000321276	NM_152386.2	80	Gtc/Atc	0	
MED12L	116931		GRCh37	3	150881780	150881780	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_086																					ENST00000474524.1:c.1208C>T	p.Ala403Val	p.A403V	ENST00000474524	NM_053002.4	403	gCc/gTc	0	
MUC4	4585		GRCh37	3	195508108	195508108	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_086																					ENST00000463781.3:c.10343C>T	p.Ser3448Leu	p.S3448L	ENST00000463781	NM_018406.6	3448	tCa/tTa	0	
NAAA	27163		GRCh37	4	76836064	76836064	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_086																					ENST00000286733.4:c.1073G>T	p.Arg358Ile	p.R358I	ENST00000286733	NM_014435.3	358	aGa/aTa	0	
LRBA	987		GRCh37	4	151753076	151753076	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_086																					ENST00000357115.3:c.4622C>T	p.Ser1541Phe	p.S1541F	ENST00000357115	NM_006726.4	1541	tCt/tTt	0	
DMXL1	1657		GRCh37	5	118451904	118451904	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_086																					ENST00000311085.8:c.616G>T	p.Val206Phe	p.V206F	ENST00000311085	NM_005509.4	206	Gtt/Ttt	0	
HUS1B	135458		GRCh37	6	656466	656466	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_086																					ENST00000380907.2:c.479C>A	p.Pro160Gln	p.P160Q	ENST00000380907	NM_148959.3	160	cCg/cAg	0	
SNAP91	9892		GRCh37	6	84417621	84417621	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_086																					ENST00000369694.2:c.26G>A	p.Arg9Gln	p.R9Q	ENST00000369694	NM_001242792.1	9	cGg/cAg	0	
CSMD1	64478		GRCh37	8	2876020	2876020	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_086																					ENST00000537824.1:c.8008G>A	p.Gly2670Ser	p.G2670S	ENST00000537824	NM_033225.5	2670	Ggc/Agc	0	
DCAF4L2	138009		GRCh37	8	88885132	88885132	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_086																					ENST00000319675.3:c.1068C>A	p.Tyr356Ter	p.Y356*	ENST00000319675	NM_152418.3	356	taC/taA	0	
BNC2	54796		GRCh37	9	16437016	16437016	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_086																					ENST00000380672.4:c.1176T>A	p.Asn392Lys	p.N392K	ENST00000380672	NM_017637.5	392	aaT/aaA	0	
FSD1L	83856		GRCh37	9	108270916	108270916	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_086																					ENST00000481272.1:c.815A>C	p.Lys272Thr	p.K272T	ENST00000481272	NM_001145313.1	272	aAg/aCg	0	
FAM73B			GRCh37	9	131804587	131804587	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_086																					ENST00000358369.4:c.101C>T	p.Ala34Val	p.A34V	ENST00000358369	NM_032809.2	34	gCa/gTa	0	
HPS5	11234		GRCh37	11	18303594	18303594	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_086																					ENST00000349215.3:c.3232G>T	p.Ala1078Ser	p.A1078S	ENST00000349215	NM_181507.1	1078	Gct/Tct	0	
RAG2	5897		GRCh37	11	36614535	36614535	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_086																					ENST00000311485.3:c.1184G>A	p.Gly395Asp	p.G395D	ENST00000311485	NM_000536.3	395	gGt/gAt	0	
CCDC89	220388		GRCh37	11	85396862	85396862	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_086																					ENST00000316398.3:c.312G>T	p.Lys104Asn	p.K104N	ENST00000316398	NM_152723.1	104	aaG/aaT	0	
DCAF5	8816		GRCh37	14	69529196	69529196	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_086																					ENST00000341516.5:c.979A>G	p.Met327Val	p.M327V	ENST00000341516	NM_003861.2	327	Atg/Gtg	0	
USP8	9101		GRCh37	15	50773729	50773729	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_086																					ENST00000307179.4:c.1270A>C	p.Lys424Gln	p.K424Q	ENST00000307179		424	Aaa/Caa	0	
MYO15A	51168		GRCh37	17	18069806	18069806	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_086																					ENST00000205890.5:c.9919G>T	p.Glu3307Ter	p.E3307*	ENST00000205890	NM_016239.3	3307	Gag/Tag	0	
HELZ	9931		GRCh37	17	65163657	65163657	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_086																					ENST00000358691.5:c.1686A>C	p.Lys562Asn	p.K562N	ENST00000358691	NM_014877.3	562	aaA/aaC	0	
MUC16	94025		GRCh37	19	8993487	8993487	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_086																					ENST00000397910.4:c.41602C>A	p.Pro13868Thr	p.P13868T	ENST00000397910	NM_024690.2	13868	Ccc/Acc	0	
HP1BP3	50809		GRCh37	1	21103241	21103241	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_108																					ENST00000312239.5:c.199C>A	p.Pro67Thr	p.P67T	ENST00000312239	NM_016287.3	67	Cca/Aca	0	
ZNF124	7678		GRCh37	1	247320249	247320249	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_108																					ENST00000543802.2:c.675A>C	p.Glu225Asp	p.E225D	ENST00000543802		225	gaA/gaC	0	
LY75	4065		GRCh37	2	160734901	160734901	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_108																					ENST00000263636.4:c.1708A>G	p.Asn570Asp	p.N570D	ENST00000263636	NM_002349.3	570	Aac/Gac	0	
ORC2	4999		GRCh37	2	201814360	201814360	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_108																					ENST00000234296.2:c.245T>G	p.Leu82Trp	p.L82W	ENST00000234296	NM_006190.4	82	tTg/tGg	0	
SP100	6672		GRCh37	2	231334757	231334757	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_108																					ENST00000264052.5:c.1373T>A	p.Leu458Gln	p.L458Q	ENST00000264052	NM_003113.3	458	cTg/cAg	0	
STAB1	23166		GRCh37	3	52553984	52553984	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_108																					ENST00000321725.6:c.5260C>T	p.Arg1754Ter	p.R1754*	ENST00000321725	NM_015136.2	1754	Cga/Tga	0	
PLSCR2	57047		GRCh37	3	146171805	146171805	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_108																					ENST00000497985.1:c.686C>T	p.Ala229Val	p.A229V	ENST00000497985	NM_001199978.1	229	gCg/gTg	0	
PIK3CA	5290		GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_108																					ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa	0	
NDNF	79625		GRCh37	4	121966919	121966919	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_108																					ENST00000379692.4:c.74G>A	p.Arg25Gln	p.R25Q	ENST00000379692	NM_024574.3	25	cGg/cAg	0	
DPCR1			GRCh37	6	30917118	30917118	+	5_prime_UTR_variant	5'UTR	SNP	G	G	A			brca_smc_2018_BB01_108																					ENST00000304311.2:c.-2598G>A		p.*866*	ENST00000304311	NM_080870.3			0	
REPIN1	29803		GRCh37	7	150069736	150069736	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_108																					ENST00000397281.2:c.1406G>A	p.Arg469His	p.R469H	ENST00000397281	NM_013400.3	469	cGc/cAc	0	
BEND7	222389		GRCh37	10	13489280	13489280	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_108																					ENST00000341083.3:c.1067C>G	p.Ala356Gly	p.A356G	ENST00000341083	NM_152751.2	356	gCt/gGt	0	
C10ORF68			GRCh37	10	33134510	33134510	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_108																					ENST00000375025.4:c.1397G>T	p.Gly466Val	p.G466V	ENST00000375025		466	gGt/gTt	0	
TET1	80312		GRCh37	10	70451087	70451087	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_108																					ENST00000373644.4:c.5927C>A	p.Ser1976Tyr	p.S1976Y	ENST00000373644	NM_030625.2	1976	tCt/tAt	0	
CD6	923		GRCh37	11	60776032	60776032	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_108																					ENST00000313421.7:c.496G>A	p.Gly166Ser	p.G166S	ENST00000313421	NM_006725.4	166	Ggt/Agt	0	
NXPE4	54827		GRCh37	11	114442099	114442099	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_108																					ENST00000375478.3:c.1196G>A	p.Cys399Tyr	p.C399Y	ENST00000375478	NM_001077639.1	399	tGt/tAt	0	
TECTA	7007		GRCh37	11	120983887	120983887	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_108																					ENST00000264037.2:c.593C>G	p.Pro198Arg	p.P198R	ENST00000264037	NM_005422.2	198	cCc/cGc	0	
TBKBP1	9755		GRCh37	17	45773681	45773681	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_108																					ENST00000361722.3:c.203G>A	p.Arg68His	p.R68H	ENST00000361722	NM_014726.2	68	cGc/cAc	0	
HELZ	9931		GRCh37	17	65214902	65214902	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_108																					ENST00000358691.5:c.19G>C	p.Glu7Gln	p.E7Q	ENST00000358691	NM_014877.3	7	Gaa/Caa	0	
CDH2	1000		GRCh37	18	25573586	25573586	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_108																					ENST00000269141.3:c.1036A>G	p.Thr346Ala	p.T346A	ENST00000269141	NM_001792.3	346	Acg/Gcg	0	
MAPK4	5596		GRCh37	18	48255680	48255680	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_108																					ENST00000400384.2:c.1220G>A	p.Arg407His	p.R407H	ENST00000400384	NM_002747.3	407	cGc/cAc	0	
ESF1	51575		GRCh37	20	13763375	13763375	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_108																					ENST00000202816.1:c.412A>T	p.Lys138Ter	p.K138*	ENST00000202816	NM_001276380.1	138	Aaa/Taa	0	
IDS	3423		GRCh37	X	148568568	148568568	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_108																					ENST00000340855.6:c.1068T>A	p.His356Gln	p.H356Q	ENST00000340855	NM_001166550.1	356	caT/caA	0	
KCNH8	131096		GRCh37	3	19384139	19384139	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR309																					ENST00000328405.2:c.503G>T	p.Arg168Leu	p.R168L	ENST00000328405	NM_144633.2	168	cGa/cTa	0	
DNAH8	1769		GRCh37	6	38818109	38818109	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR309																					ENST00000359357.3:c.4631G>A	p.Cys1544Tyr	p.C1544Y	ENST00000359357		1544	tGc/tAc	0	
PLA2G7	7941		GRCh37	6	46672367	46672367	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR309																					ENST00000274793.7:c.1256G>C	p.Gly419Ala	p.G419A	ENST00000274793	NM_005084.3	419	gGg/gCg	0	
AEBP1	165		GRCh37	7	44153569	44153569	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR309																					ENST00000223357.3:c.3186C>A	p.Ser1062Arg	p.S1062R	ENST00000223357	NM_001129.4	1062	agC/agA	0	
CSMD1	64478		GRCh37	8	2823354	2823354	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR309																					ENST00000537824.1:c.9223G>A	p.Ala3075Thr	p.A3075T	ENST00000537824	NM_033225.5	3075	Gcc/Acc	0	
MAP2K4	6416		GRCh37	17	12016671	12016671	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR309																					ENST00000353533.5:c.807C>A	p.Tyr269Ter	p.Y269*	ENST00000353533	NM_003010.3	269	taC/taA	0	
SUPT6H	6830		GRCh37	17	27023930	27023930	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR309																					ENST00000314616.6:c.4039A>G	p.Met1347Val	p.M1347V	ENST00000314616	NM_003170.3	1347	Atg/Gtg	0	
YES1	7525		GRCh37	18	742933	742933	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR309																					ENST00000314574.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000314574	NM_005433.3	349	Gaa/Taa	0	
CPAMD8	27151		GRCh37	19	17038951	17038951	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR309																					ENST00000443236.1:c.3379G>A	p.Gly1127Ser	p.G1127S	ENST00000443236	NM_015692.2	1127	Ggc/Agc	0	
PIK3R2	5296		GRCh37	19	18271756	18271756	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR309																					ENST00000222254.8:c.443C>G	p.Pro148Arg	p.P148R	ENST00000222254	NM_005027.3	148	cCg/cGg	0	
IFNL1	282618		GRCh37	19	39788889	39788889	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR309																					ENST00000333625.2:c.430G>A	p.Gly144Ser	p.G144S	ENST00000333625	NM_172140.1	144	Ggc/Agc	0	
INE1	8552		GRCh37	X	47064856	47064856	+	non_coding_transcript_exon_variant	RNA	SNP	C	C	A			brca_smc_2018_BR309																					ENST00000456273.1:n.537C>A		p.*179*	ENST00000456273				0	
TNFRSF18	8784		GRCh37	1	1138987	1138987	+	3_prime_UTR_variant	3'UTR	SNP	T	T	C			brca_smc_2018_BR367																					ENST00000379268.2:c.*237A>G		p.*79*	ENST00000379268	NM_004195.2			0	
ZFP69	339559		GRCh37	1	40945118	40945118	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR367																					ENST00000372705.3:c.85G>A	p.Ala29Thr	p.A29T	ENST00000372705	NM_198494.2	29	Gcg/Acg	0	
AKNAD1	254268		GRCh37	1	109392168	109392168	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR367																					ENST00000370001.3:c.1024C>A	p.Leu342Ile	p.L342I	ENST00000370001	NM_152763.4	342	Ctt/Att	0	
FLG	2312		GRCh37	1	152284849	152284849	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR367																					ENST00000368799.1:c.2513A>G	p.Gln838Arg	p.Q838R	ENST00000368799	NM_002016.1	838	cAg/cGg	0	
ETNK2	55224		GRCh37	1	204119075	204119075	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR367																					ENST00000367202.4:c.274A>G	p.Ile92Val	p.I92V	ENST00000367202	NM_018208.2	92	Atc/Gtc	0	
NEB	4703		GRCh37	2	152359342	152359342	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR367																					ENST00000172853.10:c.18790G>T	p.Glu6264Ter	p.E6264*	ENST00000172853		6264	Gag/Tag	0	
OBSL1	23363		GRCh37	2	220422098	220422098	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR367																					ENST00000404537.1:c.4033C>T	p.Gln1345Ter	p.Q1345*	ENST00000404537	NM_015311.2	1345	Cag/Tag	0	
ATP2B2	491		GRCh37	3	10452330	10452330	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR367																					ENST00000352432.4:c.369C>G	p.Phe123Leu	p.F123L	ENST00000352432		123	ttC/ttG	0	
SCN5A	6331		GRCh37	3	38627433	38627433	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR367																					ENST00000333535.4:c.2536C>G	p.Leu846Val	p.L846V	ENST00000333535		846	Cta/Gta	0	
HPS3	84343		GRCh37	3	148875153	148875153	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR367																					ENST00000296051.2:c.1526C>T	p.Thr509Ile	p.T509I	ENST00000296051	NM_032383.3	509	aCc/aTc	0	
EPHB3	2049		GRCh37	3	184299147	184299147	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR367																					ENST00000330394.2:c.2839G>T	p.Val947Phe	p.V947F	ENST00000330394	NM_004443.3	947	Gtc/Ttc	0	
ATP13A3	79572		GRCh37	3	194177839	194177839	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR367																					ENST00000256031.4:c.544G>T	p.Gly182Trp	p.G182W	ENST00000256031	NM_024524.3	182	Ggg/Tgg	0	
EPHA5	2044		GRCh37	4	66189926	66189926	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR367																					ENST00000273854.3:c.3020G>C	p.Arg1007Pro	p.R1007P	ENST00000273854	NM_004439.5	1007	cGg/cCg	0	
NR2F1	7025		GRCh37	5	92929366	92929366	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR367																					ENST00000327111.3:c.1090C>T	p.Pro364Ser	p.P364S	ENST00000327111	NM_005654.4	364	Ccc/Tcc	0	
HNRNPH1	3187		GRCh37	5	179044840	179044840	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR367																					ENST00000356731.5:c.881G>T	p.Arg294Leu	p.R294L	ENST00000356731		294	cGg/cTg	0	
KIF13A	63971		GRCh37	6	17804729	17804729	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR367																					ENST00000259711.6:c.2317T>A	p.Tyr773Asn	p.Y773N	ENST00000259711	NM_022113.5	773	Tac/Aac	0	
DST	667		GRCh37	6	56357791	56357791	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR367																					ENST00000244364.6:c.12622G>T	p.Val4208Leu	p.V4208L	ENST00000244364	NM_015548.4	4208	Gta/Tta	0	
TNRC18	84629		GRCh37	7	5364871	5364871	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR367																					ENST00000430969.1:c.6156A>T	p.Lys2052Asn	p.K2052N	ENST00000430969	NM_001080495.2	2052	aaA/aaT	0	
ZAN	7455		GRCh37	7	100386925	100386925	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR367																					ENST00000546292.1:c.7310C>A	p.Thr2437Asn	p.T2437N	ENST00000546292	NM_173059.1	2437	aCc/aAc	0	
THEM6	51337		GRCh37	8	143816750	143816750	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR367																					ENST00000336138.3:c.520C>T	p.Pro174Ser	p.P174S	ENST00000336138	NM_016647.2	174	Ccc/Tcc	0	
ARID5B	84159		GRCh37	10	63852241	63852241	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR367																					ENST00000279873.7:c.3019G>T	p.Gly1007Trp	p.G1007W	ENST00000279873	NM_032199.2	1007	Ggg/Tgg	0	
EFCAB4A			GRCh37	11	830018	830018	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR367																					ENST00000525077.1:c.491T>C	p.Leu164Pro	p.L164P	ENST00000525077	NM_001286606.1	164	cTg/cCg	0	
FDXACB1	91893		GRCh37	11	111746263	111746263	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR367																					ENST00000260257.4:c.1258G>A	p.Asp420Asn	p.D420N	ENST00000260257	NM_138378.2	420	Gat/Aat	0	
TRHDE	29953		GRCh37	12	73014931	73014931	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR367																					ENST00000261180.4:c.2378G>C	p.Gly793Ala	p.G793A	ENST00000261180	NM_013381.2	793	gGg/gCg	0	
SSH1	54434		GRCh37	12	109182783	109182783	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR367																					ENST00000326495.5:c.2131C>A	p.Pro711Thr	p.P711T	ENST00000326495	NM_018984.3	711	Cct/Act	0	
PIBF1	10464		GRCh37	13	73402037	73402037	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR367																					ENST00000326291.6:c.1082A>C	p.Lys361Thr	p.K361T	ENST00000326291	NM_006346.2	361	aAa/aCa	0	
TP53	7157		GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR367																					ENST00000269305.4:c.706T>G	p.Tyr236Asp	p.Y236D	ENST00000269305	NM_001126112.2	236	Tac/Gac	0	
COLEC12	81035		GRCh37	18	331757	331757	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR367																					ENST00000400256.3:c.1974G>A	p.Met658Ile	p.M658I	ENST00000400256	NM_130386.2	658	atG/atA	0	
TLE6	79816		GRCh37	19	2987187	2987187	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR367																					ENST00000246112.4:c.492G>C	p.Trp164Cys	p.W164C	ENST00000246112	NM_001143986.1	164	tgG/tgC	0	
ATG4D	84971		GRCh37	19	10657701	10657701	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR367																					ENST00000309469.4:c.680T>G	p.Phe227Cys	p.F227C	ENST00000309469	NM_032885.5	227	tTt/tGt	0	
DBP	1628		GRCh37	19	49139106	49139106	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR367																					ENST00000222122.5:c.281T>G	p.Val94Gly	p.V94G	ENST00000222122	NM_001352.3	94	gTg/gGg	0	
SOX10	6663		GRCh37	22	38370017	38370017	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR367																					ENST00000360880.2:c.886G>C	p.Glu296Gln	p.E296Q	ENST00000360880		296	Gag/Cag	0	
RANGAP1	5905		GRCh37	22	41650492	41650492	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR367																					ENST00000356244.3:c.1080C>G	p.Asp360Glu	p.D360E	ENST00000356244	NM_002883.3	360	gaC/gaG	0	
SHROOM2	357		GRCh37	X	9907300	9907300	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR367																					ENST00000380913.3:c.4205C>T	p.Ser1402Leu	p.S1402L	ENST00000380913	NM_001649.2	1402	tCg/tTg	0	
RAI2	10742		GRCh37	X	17819383	17819383	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR367																					ENST00000331511.1:c.748A>T	p.Ile250Phe	p.I250F	ENST00000331511		250	Atc/Ttc	0	
PHKA1	5255		GRCh37	X	71839125	71839125	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR367																					ENST00000373542.4:c.2168T>C	p.Phe723Ser	p.F723S	ENST00000373542	NM_002637.3	723	tTt/tCt	0	
MAGEA1	4100		GRCh37	X	152482521	152482521	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR367																					ENST00000356661.5:c.490C>G	p.Pro164Ala	p.P164A	ENST00000356661	NM_004988.4	164	Ccc/Gcc	0	
TMEM56	148534		GRCh37	1	95609592	95609592	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_078																					ENST00000370203.4:c.135G>T	p.Lys45Asn	p.K45N	ENST00000370203	NM_152487.2	45	aaG/aaT	0	
MAEL	84944		GRCh37	1	166991088	166991088	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_078																					ENST00000367872.4:c.1301C>G	p.Ser434Cys	p.S434C	ENST00000367872	NM_032858.1	434	tCt/tGt	0	
KLF11	8462		GRCh37	2	10186427	10186427	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_078																					ENST00000305883.1:c.193G>A	p.Asp65Asn	p.D65N	ENST00000305883	NM_003597.4	65	Gac/Aac	0	
DGKD	8527		GRCh37	2	234368436	234368436	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_078																					ENST00000264057.2:c.2728G>A	p.Glu910Lys	p.E910K	ENST00000264057	NM_152879.2	910	Gag/Aag	0	
PBRM1	55193		GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_078																					ENST00000296302.7:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000296302		710	Cga/Tga	0	
ARHGAP31	57514		GRCh37	3	119121152	119121152	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_078																					ENST00000264245.4:c.1553C>G	p.Ser518Cys	p.S518C	ENST00000264245	NM_020754.2	518	tCt/tGt	0	
TIPARP	25976		GRCh37	3	156395638	156395638	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_078																					ENST00000295924.7:c.152G>T	p.Gly51Val	p.G51V	ENST00000295924	NM_015508.4	51	gGa/gTa	0	
NRROS	375387		GRCh37	3	196386921	196386921	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_078																					ENST00000328557.4:c.407G>T	p.Arg136Met	p.R136M	ENST00000328557	NM_198565.1	136	aGg/aTg	0	
ANK2	287		GRCh37	4	114163268	114163268	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_078																					ENST00000357077.4:c.794A>G	p.Asn265Ser	p.N265S	ENST00000357077	NM_001148.4	265	aAt/aGt	0	
TRIM15	89870		GRCh37	6	30139723	30139723	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_078																					ENST00000376694.4:c.995T>A	p.Phe332Tyr	p.F332Y	ENST00000376694	NM_033229.2	332	tTc/tAc	0	
COL11A2	1302		GRCh37	6	33132181	33132181	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_078																					ENST00000374708.4:c.4675G>C	p.Val1559Leu	p.V1559L	ENST00000374708	NM_080681.2	1559	Gtc/Ctc	0	
CDKN2A	1029		GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BB01_078																					ENST00000304494.5:c.150+1G>C		p.X50_splice	ENST00000304494	NM_000077.4	50		0	
C9orf43	257169		GRCh37	9	116185750	116185750	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_078																					ENST00000288462.4:c.628G>A	p.Glu210Lys	p.E210K	ENST00000288462	NM_152786.2	210	Gaa/Aaa	0	
TUB	7275		GRCh37	11	8111173	8111173	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_078																					ENST00000299506.2:c.55G>A	p.Gly19Ser	p.G19S	ENST00000299506	NM_177972.2	19	Ggc/Agc	0	
KIF18A	81930		GRCh37	11	28080702	28080702	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_078																					ENST00000263181.6:c.1719G>T	p.Leu573Phe	p.L573F	ENST00000263181	NM_031217.3	573	ttG/ttT	0	
HOMEZ	57594		GRCh37	14	23745409	23745409	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_078																					ENST00000357460.5:c.1028G>C	p.Arg343Thr	p.R343T	ENST00000357460	NM_020834.2	343	aGa/aCa	0	
CCDC64B			GRCh37	16	3081097	3081097	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_078																					ENST00000389347.4:c.337G>A	p.Glu113Lys	p.E113K	ENST00000389347	NM_001103175.1	113	Gag/Aag	0	
TP53	7157		GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_078																					ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc	0	
GFAP	2670		GRCh37	17	42990706	42990706	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_078																					ENST00000253408.5:c.711G>T	p.Glu237Asp	p.E237D	ENST00000253408	NM_002055.4	237	gaG/gaT	0	
SCN4A	6329		GRCh37	17	62050164	62050164	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_078																					ENST00000435607.1:c.38G>A	p.Gly13Asp	p.G13D	ENST00000435607	NM_000334.4	13	gGc/gAc	0	
KCNJ16	3773		GRCh37	17	68128820	68128820	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_078																					ENST00000283936.1:c.592T>A	p.Cys198Ser	p.C198S	ENST00000283936	NM_018658.2	198	Tgc/Agc	0	
HDGFRP2			GRCh37	19	4496330	4496330	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_078																					ENST00000301284.4:c.1256C>G	p.Ser419Ter	p.S419*	ENST00000301284	NM_001001520.1	419	tCa/tGa	0	
ZNF383	163087		GRCh37	19	37726899	37726899	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_078																					ENST00000352998.3:c.155C>G	p.Pro52Arg	p.P52R	ENST00000352998	NM_152604.1	52	cCt/cGt	0	
GMFG	9535		GRCh37	19	39826112	39826112	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_078																					ENST00000597595.1:c.63C>A	p.Phe21Leu	p.F21L	ENST00000597595	NM_004877.2	21	ttC/ttA	0	
KRTAP10-11	386678		GRCh37	21	46066464	46066464	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_078																					ENST00000334670.8:c.89C>T	p.Pro30Leu	p.P30L	ENST00000334670	NM_198692.2	30	cCc/cTc	0	
INPP5J	27124		GRCh37	22	31522649	31522649	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_078																					ENST00000331075.5:c.1436T>A	p.Phe479Tyr	p.F479Y	ENST00000331075	NM_001284285.1	479	tTc/tAc	0	
ATP6AP1	537		GRCh37	X	153657175	153657175	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_078																					ENST00000369762.2:c.137C>T	p.Pro46Leu	p.P46L	ENST00000369762	NM_001183.4	46	cCg/cTg	0	
IQCC	55721		GRCh37	1	32673127	32673127	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR395																					ENST00000291358.6:c.845G>C	p.Gly282Ala	p.G282A	ENST00000291358	NM_018134.2	282	gGa/gCa	0	
OR2T10	127069		GRCh37	1	248756160	248756160	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR395																					ENST00000330500.2:c.910A>T	p.Met304Leu	p.M304L	ENST00000330500	NM_001004693.1	304	Atg/Ttg	0	
PJA2	9867		GRCh37	5	108714212	108714212	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR395																					ENST00000361189.2:c.976C>G	p.Gln326Glu	p.Q326E	ENST00000361189	NM_014819.4	326	Cag/Gag	0	
ASCC3	10973		GRCh37	6	101296116	101296116	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR395																					ENST00000369162.2:c.709G>A	p.Glu237Lys	p.E237K	ENST00000369162	NM_006828.2	237	Gaa/Aaa	0	
MEPCE	56257		GRCh37	7	100028653	100028653	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR395																					ENST00000310512.2:c.1012G>C	p.Gly338Arg	p.G338R	ENST00000310512	NM_019606.5	338	Ggt/Cgt	0	
RP11-664D7.4			GRCh37	8	69243718	69243718	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR395																					ENST00000512294.3:c.5C>G	p.Pro2Arg	p.P2R	ENST00000512294		2	cCa/cGa	0	
RP11-664D7.4			GRCh37	8	69243719	69243719	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR395																					ENST00000512294.3:c.4C>A	p.Pro2Thr	p.P2T	ENST00000512294		2	Cca/Aca	0	
ZSWIM8	23053		GRCh37	10	75549198	75549198	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR395																					ENST00000605216.1:c.531G>C	p.Met177Ile	p.M177I	ENST00000605216	NM_001242487.1	177	atG/atC	0	
TMPRSS13	84000		GRCh37	11	117789327	117789327	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR395																					ENST00000524993.1:c.248A>G	p.Gln83Arg	p.Q83R	ENST00000524993	NM_001077263.2	83	cAg/cGg	0	
SPTBN5	51332		GRCh37	15	42166119	42166119	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR395																					ENST00000320955.6:c.4814A>G	p.Glu1605Gly	p.E1605G	ENST00000320955	NM_016642.3	1605	gAa/gGa	0	
RHCG	51458		GRCh37	15	90030174	90030174	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR395																					ENST00000268122.4:c.227T>C	p.Phe76Ser	p.F76S	ENST00000268122	NM_016321.1	76	tTc/tCc	0	
ABCA3	21		GRCh37	16	2335441	2335441	+	splice_donor_variant	Splice_Site	SNP	A	A	T			brca_smc_2018_BR395																					ENST00000301732.5:c.3483+2T>A		p.X1161_splice	ENST00000301732	NM_001089.2	1161		0	
NKPD1	284353		GRCh37	19	45659139	45659139	+	5_prime_UTR_variant	5'UTR	SNP	G	G	C			brca_smc_2018_BR395																					ENST00000438936.2:c.-102C>G		p.*34*	ENST00000438936				0	
NINL	22981		GRCh37	20	25457018	25457018	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR395																					ENST00000278886.6:c.2909G>A	p.Gly970Glu	p.G970E	ENST00000278886	NM_025176.4	970	gGa/gAa	0	
NCOA6	23054		GRCh37	20	33329585	33329585	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR395																					ENST00000359003.2:c.4475G>C	p.Ser1492Thr	p.S1492T	ENST00000359003	NM_014071.3	1492	aGt/aCt	0	
PCNT	5116		GRCh37	21	47831355	47831355	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR395																					ENST00000359568.5:c.5368G>T	p.Gly1790Cys	p.G1790C	ENST00000359568	NM_006031.5	1790	Ggc/Tgc	0	
PPIL2	23759		GRCh37	22	22041966	22041966	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR395																					ENST00000335025.8:c.932G>C	p.Cys311Ser	p.C311S	ENST00000335025		311	tGc/tCc	0	
SYAP1	94056		GRCh37	X	16737926	16737926	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR395																					ENST00000380155.3:c.79C>A	p.Pro27Thr	p.P27T	ENST00000380155	NM_032796.3	27	Ccc/Acc	0	
PTPRC	5788		GRCh37	1	198685940	198685940	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR316																					ENST00000442510.2:c.1421C>T	p.Ala474Val	p.A474V	ENST00000442510		474	gCa/gTa	0	
TOP2B	7155		GRCh37	3	25647588	25647588	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR316																					ENST00000264331.4:c.4324C>T	p.Gln1442Ter	p.Q1442*	ENST00000264331		1442	Cag/Tag	0	
PIK3CA	5290		GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR316																					ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt	0	
MED23	9439		GRCh37	6	131914218	131914218	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR316																					ENST00000368068.3:c.3326G>T	p.Cys1109Phe	p.C1109F	ENST00000368068	NM_004830.3	1109	tGt/tTt	0	
COL14A1	7373		GRCh37	8	121240964	121240964	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR316																					ENST00000297848.3:c.2153C>T	p.Thr718Ile	p.T718I	ENST00000297848	NM_021110.2	718	aCa/aTa	0	
SEMA4D	10507		GRCh37	9	91994511	91994511	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR316																					ENST00000356444.2:c.1697T>C	p.Phe566Ser	p.F566S	ENST00000356444		566	tTc/tCc	0	
CHUK	1147		GRCh37	10	101977816	101977816	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR316																					ENST00000370397.7:c.869C>T	p.Pro290Leu	p.P290L	ENST00000370397	NM_001278.3	290	cCt/cTt	0	
C3AR1	719		GRCh37	12	8212540	8212540	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR316																					ENST00000307637.4:c.242A>T	p.His81Leu	p.H81L	ENST00000307637	NM_004054.2	81	cAc/cTc	0	
ARHGEF25	115557		GRCh37	12	58010124	58010124	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR316																					ENST00000286494.4:c.1478G>A	p.Arg493Gln	p.R493Q	ENST00000286494	NM_182947.3	493	cGg/cAg	0	
FAM71C	196472		GRCh37	12	100042451	100042451	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR316																					ENST00000324341.1:c.499G>C	p.Glu167Gln	p.E167Q	ENST00000324341	NM_153364.3	167	Gaa/Caa	0	
FMN1	342184		GRCh37	15	33192181	33192181	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR316																					ENST00000559047.1:c.3653G>A	p.Arg1218Gln	p.R1218Q	ENST00000559047	NM_001277313.1	1218	cGg/cAg	0	
SPRED3	399473		GRCh37	19	38886648	38886648	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR316																					ENST00000338502.4:c.1096C>T	p.Arg366Cys	p.R366C	ENST00000338502	NM_001042522.2	366	Cgc/Tgc	0	
ZNF226	7769		GRCh37	19	44681615	44681615	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR316																					ENST00000337433.5:c.2200A>G	p.Lys734Glu	p.K734E	ENST00000337433	NM_001032373.1	734	Aaa/Gaa	0	
NADK	65220		GRCh37	1	1688751	1688751	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			brca_smc_2018_BR431																					ENST00000341426.5:c.264-2A>T		p.X88_splice	ENST00000341426	NM_023018.4	88		0	
HNRNPR	10236		GRCh37	1	23637010	23637010	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR431																					ENST00000302271.6:c.1839C>A	p.Asn613Lys	p.N613K	ENST00000302271		613	aaC/aaA	0	
FCN3	8547		GRCh37	1	27701307	27701307	+	start_lost	Translation_Start_Site	SNP	C	C	A			brca_smc_2018_BR431																					ENST00000270879.4:c.3G>T	p.Met1?	p.M1?	ENST00000270879	NM_003665.2	1	atG/atT	0	
EPHA10	284656		GRCh37	1	38185255	38185255	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR431																					ENST00000373048.4:c.2587T>C	p.Phe863Leu	p.F863L	ENST00000373048	NM_001099439.1	863	Ttc/Ctc	0	
OR6Y1	391112		GRCh37	1	158516944	158516944	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR431																					ENST00000302617.3:c.952C>A	p.Gln318Lys	p.Q318K	ENST00000302617	NM_001005189.1	318	Cag/Aag	0	
AADAT	51166		GRCh37	4	171008293	171008293	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR431																					ENST00000337664.4:c.343T>A	p.Ser115Thr	p.S115T	ENST00000337664	NM_016228.3	115	Tct/Act	0	
EPB41L2	2037		GRCh37	6	131211535	131211535	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR431																					ENST00000337057.3:c.1559G>T	p.Arg520Leu	p.R520L	ENST00000337057	NM_001431.3	520	cGc/cTc	0	
FNDC1	84624		GRCh37	6	159653886	159653886	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR431																					ENST00000297267.9:c.2342C>T	p.Ala781Val	p.A781V	ENST00000297267	NM_032532.2	781	gCg/gTg	0	
DEPTOR	64798		GRCh37	8	121021281	121021281	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR431																					ENST00000286234.5:c.1010C>T	p.Ala337Val	p.A337V	ENST00000286234	NM_022783.2	337	gCg/gTg	0	
GLDC	2731		GRCh37	9	6553420	6553420	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR431																					ENST00000321612.6:c.2405C>T	p.Ala802Val	p.A802V	ENST00000321612	NM_000170.2	802	gCg/gTg	0	
PRUNE2	158471		GRCh37	9	79322758	79322758	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR431																					ENST00000376718.3:c.4432G>A	p.Gly1478Ser	p.G1478S	ENST00000376718	NM_015225.2	1478	Ggt/Agt	0	
RSF1	51773		GRCh37	11	77387916	77387916	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR431																					ENST00000308488.6:c.3262C>T	p.Arg1088Cys	p.R1088C	ENST00000308488		1088	Cgc/Tgc	0	
FAT3	120114		GRCh37	11	92600066	92600066	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR431																					ENST00000298047.6:c.11818C>T	p.Arg3940Trp	p.R3940W	ENST00000298047		3940	Cgg/Tgg	0	
CCDC168	643677		GRCh37	13	103384896	103384896	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR431																					ENST00000322527.2:c.4264A>G	p.Ile1422Val	p.I1422V	ENST00000322527	NM_001146197.1	1422	Att/Gtt	0	
ABCC1	4363		GRCh37	16	16149974	16149974	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR431																					ENST00000399410.3:c.1499A>G	p.Asn500Ser	p.N500S	ENST00000399410	NM_004996.3	500	aAt/aGt	0	
ANKRD11	29123		GRCh37	16	89346320	89346320	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR431																					ENST00000301030.4:c.6630G>T	p.Glu2210Asp	p.E2210D	ENST00000301030	NM_001256183.1	2210	gaG/gaT	0	
SGSM2	9905		GRCh37	17	2268242	2268242	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR431																					ENST00000426855.2:c.1052C>A	p.Pro351Gln	p.P351Q	ENST00000426855	NM_001098509.1	351	cCg/cAg	0	
ASXL3	80816		GRCh37	18	31326459	31326459	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR431																					ENST00000269197.5:c.6647G>A	p.Arg2216Gln	p.R2216Q	ENST00000269197	NM_030632.1	2216	cGg/cAg	0	
FFAR1	2864		GRCh37	19	35842731	35842731	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR431																					ENST00000246553.2:c.277G>A	p.Gly93Ser	p.G93S	ENST00000246553	NM_005303.2	93	Ggc/Agc	0	
ZNF880	400713		GRCh37	19	52888433	52888433	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR431																					ENST00000422689.2:c.1600T>A	p.Tyr534Asn	p.Y534N	ENST00000422689	NM_001145434.1	534	Tac/Aac	0	
NR0B1	190		GRCh37	X	30326861	30326861	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR431																					ENST00000378970.4:c.620C>T	p.Pro207Leu	p.P207L	ENST00000378970	NM_000475.4	207	cCg/cTg	0	
ZBTB48	3104		GRCh37	1	6646071	6646071	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR307																					ENST00000377674.4:c.1025G>A	p.Cys342Tyr	p.C342Y	ENST00000377674	NM_001278648.1	342	tGc/tAc	0	
ASXL2	55252		GRCh37	2	25982440	25982440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR307																					ENST00000435504.4:c.850C>T	p.Arg284Ter	p.R284*	ENST00000435504		284	Cga/Tga	0	
PPP1CB	5500		GRCh37	2	29011638	29011638	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR307																					ENST00000296122.6:c.707A>T	p.Asn236Ile	p.N236I	ENST00000296122		236	aAt/aTt	0	
HCLS1	3059		GRCh37	3	121356005	121356005	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR307																					ENST00000314583.3:c.553G>A	p.Glu185Lys	p.E185K	ENST00000314583	NM_005335.4	185	Gag/Aag	0	
RASA1	5921		GRCh37	5	86676331	86676331	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR307																					ENST00000274376.6:c.2609T>G	p.Leu870Trp	p.L870W	ENST00000274376	NM_002890.2	870	tTg/tGg	0	
KMT2C	58508		GRCh37	7	151877178	151877178	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR307																					ENST00000262189.6:c.7183C>T	p.Gln2395Ter	p.Q2395*	ENST00000262189	NM_170606.2	2395	Caa/Taa	0	
NRG3	10718		GRCh37	10	84711251	84711251	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR307																					ENST00000404547.1:c.1081G>T	p.Val361Leu	p.V361L	ENST00000404547		361	Gtg/Ttg	0	
DGKZ	8525		GRCh37	11	46401080	46401080	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR307																					ENST00000454345.1:c.3199G>A	p.Val1067Met	p.V1067M	ENST00000454345	NM_001105540.1	1067	Gtg/Atg	0	
KL	9365		GRCh37	13	33591135	33591135	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR307																					ENST00000380099.3:c.557A>C	p.Gln186Pro	p.Q186P	ENST00000380099	NM_004795.3	186	cAg/cCg	0	
NALCN	259232		GRCh37	13	101755650	101755650	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR307																					ENST00000251127.6:c.2930C>A	p.Pro977His	p.P977H	ENST00000251127	NM_052867.2	977	cCt/cAt	0	
AKT1	207		GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR307																					ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag	0	
ATP10A	57194		GRCh37	15	25963411	25963411	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR307																					ENST00000356865.6:c.1499A>G	p.Lys500Arg	p.K500R	ENST00000356865	NM_024490.3	500	aAg/aGg	0	
EXOC7	23265		GRCh37	17	74082220	74082220	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR307																					ENST00000335146.7:c.1589G>T	p.Ser530Ile	p.S530I	ENST00000335146		530	aGc/aTc	0	
LONP1	9361		GRCh37	19	5719798	5719798	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR307																					ENST00000360614.3:c.346A>T	p.Thr116Ser	p.T116S	ENST00000360614	NM_004793.3	116	Acg/Tcg	0	
SYNE4	163183		GRCh37	19	36499193	36499193	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR307																					ENST00000324444.3:c.205G>C	p.Glu69Gln	p.E69Q	ENST00000324444	NM_001039876.1	69	Gag/Cag	0	
TAS1R1	80835		GRCh37	1	6631193	6631193	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000333172.6:c.416C>T	p.Thr139Met	p.T139M	ENST00000333172	NM_138697.3	139	aCg/aTg	0	
TMEM201	199953		GRCh37	1	9669924	9669924	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000340381.6:c.1420C>T	p.Arg474Cys	p.R474C	ENST00000340381	NM_001130924.2	474	Cgc/Tgc	0	
ARHGEF19	128272		GRCh37	1	16535290	16535290	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000270747.3:c.260C>T	p.Thr87Ile	p.T87I	ENST00000270747	NM_153213.3	87	aCa/aTa	0	
MUL1	79594		GRCh37	1	20828607	20828607	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000264198.3:c.284C>T	p.Thr95Ile	p.T95I	ENST00000264198	NM_024544.2	95	aCa/aTa	0	
HSPG2	3339		GRCh37	1	22163333	22163333	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR255																					ENST00000374695.3:c.10317G>T	p.Gln3439His	p.Q3439H	ENST00000374695	NM_005529.5	3439	caG/caT	0	
ACOT11	26027		GRCh37	1	55062991	55062991	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000371316.3:c.667G>A	p.Val223Met	p.V223M	ENST00000371316	NM_015547.3	223	Gtg/Atg	0	
NBPF10	100132406		GRCh37	1	145323667	145323667	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR255																					ENST00000342960.5:c.3504C>G	p.Asp1168Glu	p.D1168E	ENST00000342960	NM_001039703.5	1168	gaC/gaG	0	
RGS21	431704		GRCh37	1	192316514	192316514	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR255																					ENST00000417209.2:c.83A>G	p.Asn28Ser	p.N28S	ENST00000417209	NM_001039152.3	28	aAc/aGc	0	
CR2	1380		GRCh37	1	207643244	207643244	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000367058.3:c.1022G>A	p.Arg341His	p.R341H	ENST00000367058	NM_001877.4	341	cGc/cAc	0	
CCSAP	126731		GRCh37	1	229477948	229477948	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR255																					ENST00000284617.2:c.265A>G	p.Thr89Ala	p.T89A	ENST00000284617	NM_145257.3	89	Acc/Gcc	0	
CEP170	9859		GRCh37	1	243319668	243319668	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000366542.1:c.3766C>T	p.Arg1256Cys	p.R1256C	ENST00000366542	NM_014812.2	1256	Cgt/Tgt	0	
SH3YL1	26751		GRCh37	2	249839	249839	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000356150.5:c.118G>A	p.Val40Ile	p.V40I	ENST00000356150	NM_015677.2	40	Gta/Ata	0	
XDH	7498		GRCh37	2	31590913	31590913	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR255																					ENST00000379416.3:c.2111A>G	p.Lys704Arg	p.K704R	ENST00000379416	NM_000379.3	704	aAg/aGg	0	
IL1RN	3557		GRCh37	2	113890284	113890284	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000409930.3:c.370G>A	p.Ala124Thr	p.A124T	ENST00000409930	NM_173842.2	124	Gcc/Acc	0	
LRP1B	53353		GRCh37	2	141571232	141571232	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR255																					ENST00000389484.3:c.5353A>T	p.Ile1785Phe	p.I1785F	ENST00000389484	NM_018557.2	1785	Atc/Ttc	0	
RFTN2	130132		GRCh37	2	198480610	198480610	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR255																					ENST00000295049.4:c.1144A>G	p.Arg382Gly	p.R382G	ENST00000295049	NM_144629.2	382	Aga/Gga	0	
AOX1	316		GRCh37	2	201499556	201499556	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000374700.2:c.2264C>T	p.Thr755Ile	p.T755I	ENST00000374700	NM_001159.3	755	aCc/aTc	0	
BARD1	580		GRCh37	2	215595164	215595164	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000260947.4:c.1972C>T	p.Arg658Cys	p.R658C	ENST00000260947	NM_000465.2	658	Cgc/Tgc	0	
TMEM198	130612		GRCh37	2	220413948	220413948	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000344458.2:c.817C>T	p.Arg273Trp	p.R273W	ENST00000344458		273	Cgg/Tgg	0	
MRPS25	64432		GRCh37	3	15100888	15100888	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000253686.2:c.229C>T	p.Arg77Ter	p.R77*	ENST00000253686	NM_022497.3	77	Cga/Tga	0	
CCRL2	9034		GRCh37	3	46450018	46450018	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR255																					ENST00000399036.3:c.448A>T	p.Ile150Phe	p.I150F	ENST00000399036	NM_003965.4	150	Att/Ttt	0	
APEH	327		GRCh37	3	49720002	49720002	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR255																					ENST00000296456.5:c.1716G>C	p.Gln572His	p.Q572H	ENST00000296456	NM_001640.3	572	caG/caC	0	
DNAH1	25981		GRCh37	3	52382985	52382985	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000420323.2:c.2188C>T	p.Arg730Trp	p.R730W	ENST00000420323	NM_015512.4	730	Cgg/Tgg	0	
FHIT	2272		GRCh37	3	60522679	60522679	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000468189.1:c.17G>A	p.Gly6Asp	p.G6D	ENST00000468189		6	gGc/gAc	0	
LINC00636	285205		GRCh37	3	107646994	107646994	+	non_coding_transcript_exon_variant	RNA	SNP	A	A	C			brca_smc_2018_BR255																					ENST00000494231.1:n.504A>C		p.*168*	ENST00000494231				0	
TIMMDC1	51300		GRCh37	3	119219643	119219643	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR255																					ENST00000494664.1:c.296A>G	p.His99Arg	p.H99R	ENST00000494664	NM_016589.3	99	cAt/cGt	0	
MCM2	4171		GRCh37	3	127336910	127336910	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000265056.7:c.1999G>A	p.Val667Met	p.V667M	ENST00000265056	NM_004526.3	667	Gtg/Atg	0	
PLSCR5	389158		GRCh37	3	146312871	146312871	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000443512.1:c.190-1G>A		p.X64_splice	ENST00000443512	NM_001085420.1	64		0	
VPS8	23355		GRCh37	3	184646298	184646298	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR255																					ENST00000437079.3:c.2691C>G	p.Ile897Met	p.I897M	ENST00000437079	NM_001009921.2	897	atC/atG	0	
SEPSECS	51091		GRCh37	4	25156638	25156638	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000382103.2:c.683C>T	p.Ala228Val	p.A228V	ENST00000382103	NM_016955.3	228	gCt/gTt	0	
TMEM156	80008		GRCh37	4	38990575	38990575	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR255																					ENST00000381938.3:c.635T>C	p.Met212Thr	p.M212T	ENST00000381938	NM_024943.1	212	aTg/aCg	0	
UGT2B10	7365		GRCh37	4	69693266	69693266	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000265403.7:c.1307C>T	p.Ser436Leu	p.S436L	ENST00000265403	NM_001075.4	436	tCa/tTa	0	
CABS1	85438		GRCh37	4	71201597	71201597	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000273936.5:c.841C>T	p.Arg281Trp	p.R281W	ENST00000273936	NM_033122.3	281	Cgg/Tgg	0	
MUC7	4589		GRCh37	4	71347060	71347060	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR255																					ENST00000304887.5:c.599A>C	p.Gln200Pro	p.Q200P	ENST00000304887	NM_152291.2	200	cAa/cCa	0	
SLC39A8	64116		GRCh37	4	103265689	103265689	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000356736.4:c.131C>T	p.Ser44Leu	p.S44L	ENST00000356736	NM_001135146.1	44	tCg/tTg	0	
TET2	54790		GRCh37	4	106157703	106157703	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR255																					ENST00000380013.4:c.2604T>G	p.Phe868Leu	p.F868L	ENST00000380013	NM_001127208.2	868	ttT/ttG	0	
KIAA0922			GRCh37	4	154557525	154557525	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000409663.3:c.4627G>A	p.Asp1543Asn	p.D1543N	ENST00000409663	NM_015196.3	1543	Gat/Aat	0	
FNIP2	57600		GRCh37	4	159747125	159747125	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			brca_smc_2018_BR255																					ENST00000264433.6:c.165T>A	p.Cys55Ter	p.C55*	ENST00000264433	NM_020840.1	55	tgT/tgA	0	
TENM3	55714		GRCh37	4	183694735	183694735	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000511685.1:c.5003G>A	p.Arg1668Gln	p.R1668Q	ENST00000511685		1668	cGa/cAa	0	
MARCH6	10299		GRCh37	5	10430101	10430101	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR255																					ENST00000274140.5:c.2603G>T	p.Arg868Leu	p.R868L	ENST00000274140	NM_005885.3	868	cGc/cTc	0	
NNT	23530		GRCh37	5	43656077	43656077	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR255																					ENST00000264663.5:c.2195A>G	p.Asp732Gly	p.D732G	ENST00000264663	NM_012343.3	732	gAt/gGt	0	
CTD-2203A3.1			GRCh37	5	51374759	51374759	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000510583.1:c.67C>T	p.Leu23Phe	p.L23F	ENST00000510583		23	Ctt/Ttt	0	
DMXL1	1657		GRCh37	5	118485955	118485955	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000311085.8:c.4433C>T	p.Pro1478Leu	p.P1478L	ENST00000311085	NM_005509.4	1478	cCg/cTg	0	
JADE2	23338		GRCh37	5	133914424	133914424	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR255																					ENST00000395003.1:c.1790G>T	p.Arg597Leu	p.R597L	ENST00000395003	NM_015288.4	597	cGc/cTc	0	
PCDHB17			GRCh37	5	140536078	140536078	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000539533.1:c.502G>A	p.Val168Ile	p.V168I	ENST00000539533		168	Gtt/Att	0	
LY6G5B	58496		GRCh37	6	31639845	31639845	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR255																					ENST00000375864.4:c.392C>A	p.Ser131Tyr	p.S131Y	ENST00000375864	NM_021221.2	131	tCc/tAc	0	
NOTCH4	4855		GRCh37	6	32188383	32188383	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR255																					ENST00000375023.3:c.958A>G	p.Thr320Ala	p.T320A	ENST00000375023	NM_004557.3	320	Acc/Gcc	0	
HLA-DRA	3122		GRCh37	6	32411646	32411646	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR255																					ENST00000395388.2:c.724T>G	p.Leu242Val	p.L242V	ENST00000395388	NM_019111.4	242	Ttg/Gtg	0	
LEMD2	221496		GRCh37	6	33756349	33756349	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000293760.5:c.545G>A	p.Arg182His	p.R182H	ENST00000293760	NM_181336.3	182	cGc/cAc	0	
TMEM151B	441151		GRCh37	6	44243825	44243825	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR255																					ENST00000451188.2:c.1262C>G	p.Pro421Arg	p.P421R	ENST00000451188	NM_001137560.1	421	cCg/cGg	0	
MDN1	23195		GRCh37	6	90368002	90368002	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR255																					ENST00000369393.3:c.15109G>T	p.Gly5037Cys	p.G5037C	ENST00000369393		5037	Ggt/Tgt	0	
SDIM1	100505705		GRCh37	6	166307990	166307990	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000545867.1:c.164C>T	p.Thr55Ile	p.T55I	ENST00000545867		55	aCa/aTa	0	
RADIL	55698		GRCh37	7	4874645	4874645	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000399583.3:c.1009G>A	p.Val337Met	p.V337M	ENST00000399583	NM_018059.4	337	Gtg/Atg	0	
SP4	6671		GRCh37	7	21470310	21470310	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR255																					ENST00000222584.3:c.1527G>C	p.Gln509His	p.Q509H	ENST00000222584	NM_003112.3	509	caG/caC	0	
DNAH11	8701		GRCh37	7	21631070	21631070	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000409508.3:c.2542G>A	p.Val848Met	p.V848M	ENST00000409508	NM_001277115.1	848	Gtg/Atg	0	
GLI3	2737		GRCh37	7	42007266	42007266	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR255																					ENST00000395925.3:c.2359A>C	p.Asn787His	p.N787H	ENST00000395925	NM_000168.5	787	Aat/Cat	0	
OGDH	4967		GRCh37	7	44664106	44664106	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000222673.5:c.164C>T	p.Ser55Leu	p.S55L	ENST00000222673	NM_002541.3	55	tCg/tTg	0	
PCLO	27445		GRCh37	7	82784651	82784651	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR255																					ENST00000333891.9:c.1306C>A	p.Pro436Thr	p.P436T	ENST00000333891	NM_033026.5	436	Cct/Act	0	
FAM200A	221786		GRCh37	7	99145634	99145634	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000449309.1:c.397C>T	p.Arg133Trp	p.R133W	ENST00000449309	NM_145111.3	133	Cgg/Tgg	0	
PLXNA4	91584		GRCh37	7	131887415	131887415	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000321063.4:c.2576G>A	p.Arg859His	p.R859H	ENST00000321063	NM_020911.1	859	cGc/cAc	0	
KRBA1	84626		GRCh37	7	149430438	149430438	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR255																					ENST00000319551.8:c.2212C>G	p.Leu738Val	p.L738V	ENST00000319551		738	Ctg/Gtg	0	
GALNTL5	168391		GRCh37	7	151668119	151668119	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000392800.2:c.337G>A	p.Glu113Lys	p.E113K	ENST00000392800	NM_145292.3	113	Gaa/Aaa	0	
PSD3	23362		GRCh37	8	18393435	18393435	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR255																					ENST00000440756.2:c.2968A>G	p.Lys990Glu	p.K990E	ENST00000440756		990	Aag/Gag	0	
NUDT18	79873		GRCh37	8	21965026	21965026	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000309188.6:c.757G>A	p.Gly253Arg	p.G253R	ENST00000309188	NM_024815.3	253	Ggg/Agg	0	
ADAM28	10863		GRCh37	8	24184140	24184140	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000265769.4:c.964G>A	p.Val322Ile	p.V322I	ENST00000265769	NM_014265.4	322	Gtt/Att	0	
SFRP1	6422		GRCh37	8	41122757	41122757	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR255																					ENST00000220772.3:c.874A>G	p.Lys292Glu	p.K292E	ENST00000220772	NM_003012.4	292	Aag/Gag	0	
EYA1	2138		GRCh37	8	72156905	72156905	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR255																					ENST00000340726.3:c.1073T>G	p.Leu358Arg	p.L358R	ENST00000340726	NM_000503.4	358	cTt/cGt	0	
RALYL	138046		GRCh37	8	85774550	85774550	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000521268.1:c.433C>T	p.Arg145Cys	p.R145C	ENST00000521268	NM_173848.5	145	Cgt/Tgt	0	
NIPAL2	79815		GRCh37	8	99234772	99234772	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR255																					ENST00000341166.3:c.493A>C	p.Thr165Pro	p.T165P	ENST00000341166	NM_024759.1	165	Act/Cct	0	
VPS13B	157680		GRCh37	8	100866334	100866334	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR255																					ENST00000358544.2:c.10792A>T	p.Ser3598Cys	p.S3598C	ENST00000358544	NM_017890.4	3598	Agc/Tgc	0	
WISP1			GRCh37	8	134237795	134237795	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000250160.6:c.773C>T	p.Pro258Leu	p.P258L	ENST00000250160	NM_003882.3	258	cCa/cTa	0	
SLURP1	57152		GRCh37	8	143823793	143823793	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000246515.1:c.11G>A	p.Arg4His	p.R4H	ENST00000246515	NM_020427.2	4	cGc/cAc	0	
PLEC	5339		GRCh37	8	144998961	144998961	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR255																					ENST00000322810.4:c.5547G>C	p.Glu1849Asp	p.E1849D	ENST00000322810	NM_201380.2	1849	gaG/gaC	0	
BNC2	54796		GRCh37	9	16435848	16435848	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR255																					ENST00000380672.4:c.2344A>G	p.Thr782Ala	p.T782A	ENST00000380672	NM_017637.5	782	Act/Gct	0	
FOCAD	54914		GRCh37	9	20740323	20740323	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR255																					ENST00000338382.6:c.376A>G	p.Ser126Gly	p.S126G	ENST00000338382		126	Agt/Ggt	0	
FOCAD	54914		GRCh37	9	20923667	20923667	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000338382.6:c.2861C>T	p.Pro954Leu	p.P954L	ENST00000338382		954	cCg/cTg	0	
FOCAD	54914		GRCh37	9	20929372	20929372	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000338382.6:c.3094G>A	p.Glu1032Lys	p.E1032K	ENST00000338382		1032	Gaa/Aaa	0	
SPATA31A3	727830		GRCh37	9	40702839	40702839	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR255																					ENST00000356699.5:c.496G>C	p.Ala166Pro	p.A166P	ENST00000356699	NM_001083124.1	166	Gcc/Ccc	0	
ROR2	4920		GRCh37	9	94519784	94519784	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000375708.3:c.233C>T	p.Thr78Met	p.T78M	ENST00000375708	NM_004560.3	78	aCg/aTg	0	
TGFBR1	7046		GRCh37	9	101894884	101894884	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR255																					ENST00000374994.4:c.437A>G	p.Tyr146Cys	p.Y146C	ENST00000374994	NM_004612.2	146	tAt/tGt	0	
C9orf152	401546		GRCh37	9	112963497	112963497	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000400613.4:c.451C>T	p.Leu151Phe	p.L151F	ENST00000400613	NM_001012993.2	151	Ctc/Ttc	0	
ZNF483	158399		GRCh37	9	114305170	114305170	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000309235.5:c.1955G>A	p.Arg652His	p.R652H	ENST00000309235	NM_133464.2	652	cGt/cAt	0	
KIF12	113220		GRCh37	9	116854684	116854684	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000374118.3:c.1331C>T	p.Thr444Met	p.T444M	ENST00000374118	NM_138424.1	444	aCg/aTg	0	
RABGAP1	23637		GRCh37	9	125782737	125782737	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR255																					ENST00000373647.4:c.1793A>G	p.Lys598Arg	p.K598R	ENST00000373647	NM_012197.3	598	aAg/aGg	0	
ENG	2022		GRCh37	9	130578028	130578028	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000373203.4:c.1910G>A	p.Ser637Asn	p.S637N	ENST00000373203	NM_000118.3	637	aGc/aAc	0	
ENDOG	2021		GRCh37	9	131583071	131583071	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR255																					ENST00000372642.4:c.555C>A	p.Ser185Arg	p.S185R	ENST00000372642	NM_004435.2	185	agC/agA	0	
FCN1	2219		GRCh37	9	137801718	137801718	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR255																					ENST00000371806.3:c.907G>T	p.Gly303Cys	p.G303C	ENST00000371806	NM_002003.3	303	Ggt/Tgt	0	
NPDC1	56654		GRCh37	9	139935162	139935162	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR255																					ENST00000371601.4:c.584G>T	p.Gly195Val	p.G195V	ENST00000371601	NM_015392.3	195	gGt/gTt	0	
FRMD4A	55691		GRCh37	10	14372086	14372086	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000357447.2:c.16G>A	p.Val6Met	p.V6M	ENST00000357447	NM_018027.3	6	Gtg/Atg	0	
JMJD1C	221037		GRCh37	10	64974548	64974548	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR255																					ENST00000399262.2:c.1379T>C	p.Met460Thr	p.M460T	ENST00000399262	NM_032776.1	460	aTg/aCg	0	
LRIT1	26103		GRCh37	10	85997291	85997291	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR255																					ENST00000372105.3:c.274T>G	p.Tyr92Asp	p.Y92D	ENST00000372105	NM_015613.2	92	Tac/Gac	0	
CCSER2	54462		GRCh37	10	86237400	86237400	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR255																					ENST00000224756.8:c.2305A>G	p.Thr769Ala	p.T769A	ENST00000224756	NM_018999.2	769	Aca/Gca	0	
ATRNL1	26033		GRCh37	10	117061447	117061447	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000355044.3:c.2712G>A	p.Met904Ile	p.M904I	ENST00000355044	NM_207303.2	904	atG/atA	0	
MUC5B	727897		GRCh37	11	1255033	1255033	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000529681.1:c.2332G>A	p.Gly778Ser	p.G778S	ENST00000529681	NM_002458.2	778	Ggt/Agt	0	
PLEKHA7	144100		GRCh37	11	16838364	16838364	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000355661.3:c.1849C>T	p.Arg617Trp	p.R617W	ENST00000355661		617	Cgg/Tgg	0	
OR5B2	390190		GRCh37	11	58190047	58190047	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR255																					ENST00000302581.2:c.688A>G	p.Lys230Glu	p.K230E	ENST00000302581	NM_001005566.2	230	Aag/Gag	0	
CCDC88B	283234		GRCh37	11	64121190	64121190	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR255																					ENST00000356786.5:c.3837C>G	p.Asp1279Glu	p.D1279E	ENST00000356786	NM_032251.5	1279	gaC/gaG	0	
TPCN2	219931		GRCh37	11	68821507	68821507	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000294309.3:c.116C>T	p.Ala39Val	p.A39V	ENST00000294309	NM_139075.3	39	gCg/gTg	0	
SHANK2	22941		GRCh37	11	70805650	70805650	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR255																					ENST00000338508.4:c.677T>A	p.Phe226Tyr	p.F226Y	ENST00000338508		226	tTc/tAc	0	
CDON	50937		GRCh37	11	125867104	125867104	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000392693.3:c.2360C>T	p.Pro787Leu	p.P787L	ENST00000392693	NM_001243597.1	787	cCa/cTa	0	
ETV6	2120		GRCh37	12	11905496	11905496	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR255																					ENST00000396373.4:c.146G>T	p.Arg49Leu	p.R49L	ENST00000396373	NM_001987.4	49	cGc/cTc	0	
COL2A1	1280		GRCh37	12	48390390	48390390	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR255																					ENST00000380518.3:c.550G>T	p.Ala184Ser	p.A184S	ENST00000380518	NM_033150.2	184	Gct/Tct	0	
WNT10B	7480		GRCh37	12	49362000	49362000	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR255																					ENST00000301061.4:c.440G>C	p.Gly147Ala	p.G147A	ENST00000301061	NM_003394.3	147	gGc/gCc	0	
KRT74	121391		GRCh37	12	52963642	52963642	+	splice_donor_variant	Splice_Site	SNP	C	C	A			brca_smc_2018_BR255																					ENST00000305620.2:c.1134+1G>T		p.X378_splice	ENST00000305620	NM_175053.3	378		0	
KRT3	3850		GRCh37	12	53189483	53189483	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR255																					ENST00000417996.2:c.344T>A	p.Met115Lys	p.M115K	ENST00000417996	NM_057088.2	115	aTg/aAg	0	
DCD	117159		GRCh37	12	55038981	55038981	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000293371.6:c.265G>A	p.Glu89Lys	p.E89K	ENST00000293371	NM_053283.2	89	Gaa/Aaa	0	
R3HDM2	22864		GRCh37	12	57652771	57652771	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR255																					ENST00000347140.3:c.2161A>C	p.Asn721His	p.N721H	ENST00000347140		721	Aac/Cac	0	
GLIPR1	11010		GRCh37	12	75892603	75892603	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000266659.3:c.647-1G>A		p.X216_splice	ENST00000266659	NM_006851.2	216		0	
CEP290	80184		GRCh37	12	88444154	88444154	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR255																					ENST00000552810.1:c.7186G>T	p.Asp2396Tyr	p.D2396Y	ENST00000552810	NM_025114.3	2396	Gat/Tat	0	
CHST11	50515		GRCh37	12	105150997	105150997	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000303694.5:c.475G>A	p.Ala159Thr	p.A159T	ENST00000303694	NM_018413.5	159	Gcc/Acc	0	
ZNF605	100289635		GRCh37	12	133502716	133502716	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR255																					ENST00000360187.4:c.1169A>C	p.Glu390Ala	p.E390A	ENST00000360187	NM_183238.3	390	gAg/gCg	0	
DOCK9	23348		GRCh37	13	99461689	99461689	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000376460.1:c.5284C>T	p.Arg1762Trp	p.R1762W	ENST00000376460	NM_015296.2	1762	Cgg/Tgg	0	
CHD8	57680		GRCh37	14	21860008	21860008	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000399982.2:c.6869G>A	p.Arg2290Lys	p.R2290K	ENST00000399982	NM_001170629.1	2290	aGa/aAa	0	
HOMEZ	57594		GRCh37	14	23745533	23745533	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000357460.5:c.904G>A	p.Ala302Thr	p.A302T	ENST00000357460	NM_020834.2	302	Gcc/Acc	0	
NOVA1	4857		GRCh37	14	26917434	26917434	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000539517.2:c.1255G>A	p.Gly419Arg	p.G419R	ENST00000539517	NM_002515.2	419	Gga/Aga	0	
PELI2	57161		GRCh37	14	56757090	56757090	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR255																					ENST00000267460.4:c.612G>T	p.Gln204His	p.Q204H	ENST00000267460	NM_021255.2	204	caG/caT	0	
SYNE2	23224		GRCh37	14	64628977	64628977	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000344113.4:c.16282G>A	p.Ala5428Thr	p.A5428T	ENST00000344113	NM_015180.4	5428	Gcc/Acc	0	
ASB2	51676		GRCh37	14	94401017	94401017	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR255																					ENST00000315988.4:c.1749C>A	p.Tyr583Ter	p.Y583*	ENST00000315988	NM_016150.4	583	taC/taA	0	
SLC25A47	283600		GRCh37	14	100795139	100795139	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR255																					ENST00000361529.3:c.404G>T	p.Arg135Leu	p.R135L	ENST00000361529	NM_207117.2	135	cGg/cTg	0	
GOLGA6L2	283685		GRCh37	15	23686378	23686378	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR255																					ENST00000567107.1:c.1244A>C	p.Glu415Ala	p.E415A	ENST00000567107		415	gAg/gCg	0	
PHGR1	644844		GRCh37	15	40648430	40648430	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000448599.2:c.175C>T	p.His59Tyr	p.H59Y	ENST00000448599	NM_001145643.1	59	Cac/Tac	0	
JMJD7-PLA2G4B	8681		GRCh37	15	42128423	42128423	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000382448.4:c.607C>T	p.Arg203Trp	p.R203W	ENST00000382448		203	Cgg/Tgg	0	
TRIP4	9325		GRCh37	15	64698539	64698539	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR255																					ENST00000261884.3:c.708T>G	p.Asn236Lys	p.N236K	ENST00000261884	NM_016213.4	236	aaT/aaG	0	
FAH	2184		GRCh37	15	80450501	80450501	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR255																					ENST00000261755.5:c.181G>T	p.Val61Phe	p.V61F	ENST00000261755		61	Gtc/Ttc	0	
POLG	5428		GRCh37	15	89873365	89873365	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000268124.5:c.802G>A	p.Gly268Arg	p.G268R	ENST00000268124	NM_001126131.1	268	Ggg/Agg	0	
TTLL13			GRCh37	15	90801331	90801331	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000339615.5:c.997G>A	p.Gly333Arg	p.G333R	ENST00000339615	NM_001029964.2	333	Ggg/Agg	0	
FURIN	5045		GRCh37	15	91424630	91424630	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR255																					ENST00000268171.3:c.1907T>A	p.Ile636Asn	p.I636N	ENST00000268171	NM_002569.2	636	aTc/aAc	0	
MAN2A2	4122		GRCh37	15	91461497	91461497	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000360468.3:c.3068C>T	p.Ala1023Val	p.A1023V	ENST00000360468	NM_006122.2	1023	gCg/gTg	0	
IQCK	124152		GRCh37	16	19729657	19729657	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR255																					ENST00000320394.6:c.29A>G	p.His10Arg	p.H10R	ENST00000320394	NM_153208.1	10	cAc/cGc	0	
CLEC18A	348174		GRCh37	16	69988463	69988463	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR255																					ENST00000288040.6:c.443C>G	p.Thr148Ser	p.T148S	ENST00000288040	NM_001136214.2	148	aCc/aGc	0	
HYDIN	54768		GRCh37	16	71094514	71094514	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000393567.2:c.2422C>T	p.His808Tyr	p.H808Y	ENST00000393567	NM_001270974.1	808	Cat/Tat	0	
ADAT1	23536		GRCh37	16	75646460	75646460	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR255																					ENST00000307921.3:c.724A>C	p.Thr242Pro	p.T242P	ENST00000307921	NM_012091.3	242	Act/Cct	0	
ANKRD11	29123		GRCh37	16	89335056	89335056	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000301030.4:c.7822C>T	p.Arg2608Trp	p.R2608W	ENST00000301030	NM_001256183.1	2608	Cgg/Tgg	0	
MINK1	50488		GRCh37	17	4798370	4798370	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000355280.6:c.2918C>T	p.Ala973Val	p.A973V	ENST00000355280	NM_001024937.3	973	gCc/gTc	0	
KIF1C	10749		GRCh37	17	4910278	4910278	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR255																					ENST00000320785.5:c.1234T>G	p.Ser412Ala	p.S412A	ENST00000320785	NM_006612.5	412	Tca/Gca	0	
COX10	1352		GRCh37	17	13977768	13977768	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000261643.3:c.172C>T	p.Arg58Cys	p.R58C	ENST00000261643	NM_001303.3	58	Cgc/Tgc	0	
MAPK7	5598		GRCh37	17	19285705	19285705	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000308406.5:c.2089G>A	p.Gly697Arg	p.G697R	ENST00000308406	NM_139033.2	697	Ggg/Agg	0	
SLC4A1	6521		GRCh37	17	42328621	42328621	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000262418.6:c.2561C>T	p.Pro854Leu	p.P854L	ENST00000262418	NM_000342.3	854	cCg/cTg	0	
OSBPL7	114881		GRCh37	17	45893819	45893819	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000007414.3:c.958G>A	p.Ala320Thr	p.A320T	ENST00000007414	NM_145798.2	320	Gcc/Acc	0	
SCN4A	6329		GRCh37	17	62049982	62049982	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR255																					ENST00000435607.1:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000435607	NM_000334.4	74	Gag/Cag	0	
ITGB4	3691		GRCh37	17	73732466	73732466	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000200181.3:c.1859C>T	p.Ala620Val	p.A620V	ENST00000200181	NM_000213.3	620	gCg/gTg	0	
FASN	2194		GRCh37	17	80040513	80040513	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000306749.2:c.5809G>A	p.Val1937Ile	p.V1937I	ENST00000306749	NM_004104.4	1937	Gta/Ata	0	
HRH4	59340		GRCh37	18	22048821	22048821	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR255																					ENST00000256906.4:c.263T>G	p.Val88Gly	p.V88G	ENST00000256906	NM_021624.3	88	gTa/gGa	0	
CCDC102B	79839		GRCh37	18	66721324	66721324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR255																					ENST00000319445.6:c.1492G>T	p.Glu498Ter	p.E498*	ENST00000319445	NM_001093729.1	498	Gaa/Taa	0	
MRPL54	116541		GRCh37	19	3767330	3767330	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000330133.4:c.356G>A	p.Arg119Gln	p.R119Q	ENST00000330133	NM_172251.2	119	cGg/cAg	0	
LONP1	9361		GRCh37	19	5692192	5692192	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000360614.3:c.2731G>A	p.Val911Ile	p.V911I	ENST00000360614	NM_004793.3	911	Gtc/Atc	0	
PPAN	56342		GRCh37	19	10221015	10221015	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR255																					ENST00000253107.7:c.838A>G	p.Thr280Ala	p.T280A	ENST00000253107	NM_020230.5	280	Aca/Gca	0	
DNM2	1785		GRCh37	19	10939921	10939921	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000355667.6:c.2268G>A	p.Trp756Ter	p.W756*	ENST00000355667	NM_001005360.2	756	tgG/tgA	0	
ZNF439	90594		GRCh37	19	11977366	11977366	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR255																					ENST00000304030.2:c.190G>C	p.Asp64His	p.D64H	ENST00000304030	NM_152262.2	64	Gac/Cac	0	
TRMT1	55621		GRCh37	19	13223796	13223796	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR255																					ENST00000357720.4:c.671C>G	p.Ser224Trp	p.S224W	ENST00000357720	NM_001136035.2	224	tCg/tGg	0	
FAM129C	199786		GRCh37	19	17653000	17653000	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000335393.4:c.1319G>A	p.Arg440His	p.R440H	ENST00000335393	NM_173544.4	440	cGt/cAt	0	
ZNF208	7757		GRCh37	19	22156850	22156850	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR255																					ENST00000397126.4:c.986T>C	p.Ile329Thr	p.I329T	ENST00000397126	NM_007153.3	329	aTt/aCt	0	
ZNF507	22847		GRCh37	19	32845370	32845370	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000311921.4:c.1634C>T	p.Ser545Leu	p.S545L	ENST00000311921	NM_014910.4	545	tCg/tTg	0	
CEACAM5	1048		GRCh37	19	42213944	42213944	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR255																					ENST00000221992.6:c.410A>C	p.Gln137Pro	p.Q137P	ENST00000221992	NM_004363.2	137	cAg/cCg	0	
RTN2	6253		GRCh37	19	45998042	45998042	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000245923.4:c.301C>T	p.Pro101Ser	p.P101S	ENST00000245923	NM_005619.4	101	Cct/Tct	0	
KCNJ14	3770		GRCh37	19	48967535	48967535	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR255																					ENST00000342291.2:c.812C>G	p.Pro271Arg	p.P271R	ENST00000342291	NM_013348.3	271	cCc/cGc	0	
TBC1D17	79735		GRCh37	19	50381765	50381765	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR255																					ENST00000221543.5:c.131T>C	p.Val44Ala	p.V44A	ENST00000221543	NM_024682.2	44	gTc/gCc	0	
ATF5	22809		GRCh37	19	50436011	50436011	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR255																					ENST00000423777.2:c.511G>T	p.Gly171Trp	p.G171W	ENST00000423777	NM_001193646.1	171	Ggg/Tgg	0	
VSIG10L	147645		GRCh37	19	51837116	51837116	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR255																					ENST00000335624.4:c.2503C>A	p.Pro835Thr	p.P835T	ENST00000335624	NM_001163922.1	835	Cca/Aca	0	
ZNF460	10794		GRCh37	19	57803539	57803539	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000360338.3:c.1630G>A	p.Ala544Thr	p.A544T	ENST00000360338	NM_006635.3	544	Gct/Act	0	
MZF1	7593		GRCh37	19	59074682	59074682	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR255																					ENST00000215057.2:c.962A>T	p.Asp321Val	p.D321V	ENST00000215057	NM_001267033.1	321	gAt/gTt	0	
NOP56	10528		GRCh37	20	2636357	2636357	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000329276.5:c.874G>A	p.Val292Ile	p.V292I	ENST00000329276	NM_006392.3	292	Gta/Ata	0	
SLC4A11	83959		GRCh37	20	3211637	3211637	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR255																					ENST00000380056.3:c.1158C>A	p.Cys386Ter	p.C386*	ENST00000380056	NM_032034.3	386	tgC/tgA	0	
ADRA1D	146		GRCh37	20	4229580	4229580	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000379453.4:c.25G>A	p.Val9Ile	p.V9I	ENST00000379453	NM_000678.3	9	Gtc/Atc	0	
BRWD1	54014		GRCh37	21	40568985	40568985	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000333229.2:c.6010G>A	p.Glu2004Lys	p.E2004K	ENST00000333229	NM_018963.4	2004	Gaa/Aaa	0	
MCM3AP	8888		GRCh37	21	47693424	47693424	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000291688.1:c.2074C>T	p.Arg692Trp	p.R692W	ENST00000291688	NM_003906.3	692	Cgg/Tgg	0	
KIAA1671	85379		GRCh37	22	25435474	25435474	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR255																					ENST00000358431.3:c.2377G>A	p.Val793Ile	p.V793I	ENST00000358431	NM_001145206.1	793	Gtc/Atc	0	
BAIAP2L2	80115		GRCh37	22	38481311	38481311	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR255																					ENST00000381669.3:c.1586G>T	p.Arg529Leu	p.R529L	ENST00000381669	NM_025045.4	529	cGc/cTc	0	
FAM9B	171483		GRCh37	X	9050618	9050618	+	splice_donor_variant,non_coding_transcript_variant	Splice_Site	SNP	A	A	G			brca_smc_2018_BR255																					ENST00000461107.1:n.372+2T>C		p.X124_splice	ENST00000461107		124		0	
HUWE1	10075		GRCh37	X	53569497	53569497	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000262854.6:c.11383G>A	p.Glu3795Lys	p.E3795K	ENST00000262854	NM_031407.5	3795	Gag/Aag	0	
GLRA4	441509		GRCh37	X	102968515	102968515	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR255																					ENST00000372617.4:c.1016T>C	p.Ile339Thr	p.I339T	ENST00000372617	NM_001024452.2	339	aTa/aCa	0	
RBMXL3	139804		GRCh37	X	114426765	114426765	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR255																					ENST00000424776.3:c.2761C>T	p.Pro921Ser	p.P921S	ENST00000424776	NM_001145346.1	921	Ccc/Tcc	0	
PRSS50	29122		GRCh37	3	46753903	46753903	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR226																					ENST00000315170.7:c.991G>A	p.Gly331Ser	p.G331S	ENST00000315170	NM_013270.4	331	Ggt/Agt	0	
TENM3	55714		GRCh37	4	183267998	183267998	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR226																					ENST00000511685.1:c.427C>T	p.Arg143Cys	p.R143C	ENST00000511685		143	Cgc/Tgc	0	
GATS			GRCh37	7	99821555	99821555	+	non_coding_transcript_exon_variant	RNA	SNP	G	G	T			brca_smc_2018_BR226																					ENST00000328453.5:n.366C>A		p.*122*	ENST00000328453				0	
CA9	768		GRCh37	9	35680997	35680997	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR226																					ENST00000378357.4:c.1355C>T	p.Ala452Val	p.A452V	ENST00000378357	NM_001216.2	452	gCa/gTa	0	
AKT1	207		GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR226																					ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag	0	
CEP250	11190		GRCh37	20	34067057	34067057	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR226																					ENST00000397527.1:c.2096C>T	p.Ser699Leu	p.S699L	ENST00000397527	NM_007186.3	699	tCa/tTa	0	
MTG2	26164		GRCh37	20	60770928	60770928	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR226																					ENST00000370823.3:c.275T>G	p.Phe92Cys	p.F92C	ENST00000370823	NM_015666.3	92	tTc/tGc	0	
ZBTB17	7709		GRCh37	1	16273463	16273463	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_109																					ENST00000375743.4:c.361C>G	p.Pro121Ala	p.P121A	ENST00000375743	NM_003443.2	121	Cct/Gct	0	
VTCN1	79679		GRCh37	1	117690401	117690401	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_109																					ENST00000369458.3:c.728C>T	p.Ser243Leu	p.S243L	ENST00000369458	NM_024626.3	243	tCg/tTg	0	
MAEL	84944		GRCh37	1	166985521	166985521	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_109																					ENST00000367872.4:c.908C>T	p.Ala303Val	p.A303V	ENST00000367872	NM_032858.1	303	gCg/gTg	0	
TLR5	7100		GRCh37	1	223285247	223285247	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_109																					ENST00000366881.1:c.1127A>T	p.Gln376Leu	p.Q376L	ENST00000366881	NM_003268.5	376	cAa/cTa	0	
ACP1	52		GRCh37	2	277033	277033	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_109																					ENST00000272065.5:c.347T>A	p.Leu116Gln	p.L116Q	ENST00000272065	NM_004300.3	116	cTa/cAa	0	
AMER3	205147		GRCh37	2	131520057	131520057	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_109																					ENST00000321420.4:c.412T>G	p.Phe138Val	p.F138V	ENST00000321420		138	Ttt/Gtt	0	
UNC80	285175		GRCh37	2	210714271	210714271	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_109																					ENST00000439458.1:c.3557G>T	p.Arg1186Leu	p.R1186L	ENST00000439458	NM_032504.1	1186	cGc/cTc	0	
COL4A4	1286		GRCh37	2	227924932	227924932	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_109																					ENST00000396625.3:c.2084G>A	p.Gly695Asp	p.G695D	ENST00000396625	NM_000092.4	695	gGt/gAt	0	
BCHE	590		GRCh37	3	165548788	165548788	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_109																					ENST00000264381.3:c.34T>A	p.Phe12Ile	p.F12I	ENST00000264381	NM_000055.2	12	Ttt/Att	0	
PCDH10	57575		GRCh37	4	134072475	134072475	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_109																					ENST00000264360.5:c.1180C>T	p.Gln394Ter	p.Q394*	ENST00000264360	NM_032961.1	394	Cag/Tag	0	
RASGRF2	5924		GRCh37	5	80376469	80376469	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_109																					ENST00000265080.4:c.1022G>A	p.Arg341His	p.R341H	ENST00000265080	NM_006909.2	341	cGt/cAt	0	
ATXN1	6310		GRCh37	6	16327685	16327685	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_109																					ENST00000244769.4:c.857C>T	p.Pro286Leu	p.P286L	ENST00000244769	NM_000332.3	286	cCc/cTc	0	
ZSCAN23	222696		GRCh37	6	28402781	28402781	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_109																					ENST00000289788.4:c.631C>T	p.Gln211Ter	p.Q211*	ENST00000289788	NM_001012455.1	211	Caa/Taa	0	
ETV1	2115		GRCh37	7	13971325	13971325	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_109																					ENST00000405218.2:c.604A>G	p.Thr202Ala	p.T202A	ENST00000405218		202	Acg/Gcg	0	
PKD1L1	168507		GRCh37	7	47840413	47840413	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_109																					ENST00000289672.2:c.8027T>A	p.Val2676Asp	p.V2676D	ENST00000289672	NM_138295.3	2676	gTt/gAt	0	
OR6V1	346517		GRCh37	7	142749626	142749626	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_109																					ENST00000418316.1:c.189T>A	p.Asn63Lys	p.N63K	ENST00000418316	NM_001001667.1	63	aaT/aaA	0	
RBM33	155435		GRCh37	7	155556665	155556665	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_109																					ENST00000401878.3:c.3139G>C	p.Val1047Leu	p.V1047L	ENST00000401878	NM_053043.2	1047	Gtc/Ctc	0	
CHRNA6	8973		GRCh37	8	42623566	42623566	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_109																					ENST00000276410.2:c.8C>A	p.Thr3Asn	p.T3N	ENST00000276410	NM_004198.3	3	aCc/aAc	0	
TMEM26	219623		GRCh37	10	63170298	63170298	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_109																					ENST00000399298.3:c.889G>C	p.Val297Leu	p.V297L	ENST00000399298	NM_178505.6	297	Gtg/Ctg	0	
FBXW4	6468		GRCh37	10	103372204	103372204	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_109																					ENST00000331272.7:c.867C>G	p.Asp289Glu	p.D289E	ENST00000331272	NM_022039.3	289	gaC/gaG	0	
BRSK2	9024		GRCh37	11	1481906	1481906	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_109																					ENST00000528841.1:c.2164G>T	p.Asp722Tyr	p.D722Y	ENST00000528841		722	Gac/Tac	0	
KIF18A	81930		GRCh37	11	28119434	28119434	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_109																					ENST00000263181.6:c.61G>T	p.Glu21Ter	p.E21*	ENST00000263181	NM_031217.3	21	Gaa/Taa	0	
CASC1	55259		GRCh37	12	25264737	25264737	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_109																					ENST00000320267.9:c.1730A>C	p.His577Pro	p.H577P	ENST00000320267	NM_001082973.1	577	cAc/cCc	0	
PDZRN4	29951		GRCh37	12	41582904	41582904	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_109																					ENST00000402685.2:c.647G>A	p.Arg216Lys	p.R216K	ENST00000402685	NM_001164595.1	216	aGg/aAg	0	
KDELC1	79070		GRCh37	13	103443489	103443489	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			brca_smc_2018_BB01_109																					ENST00000376004.4:c.846-1G>T		p.X282_splice	ENST00000376004	NM_024089.2	282		0	
C1QBP	708		GRCh37	17	5336994	5336994	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_109																					ENST00000225698.4:c.571G>T	p.Asp191Tyr	p.D191Y	ENST00000225698	NM_001212.3	191	Gat/Tat	0	
TP53	7157		GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_109																					ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg	0	
TSKS	60385		GRCh37	19	50249950	50249950	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_109																					ENST00000246801.3:c.769G>A	p.Glu257Lys	p.E257K	ENST00000246801	NM_021733.1	257	Gag/Aag	0	
PHACTR3	116154		GRCh37	20	58180149	58180149	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_109																					ENST00000371015.1:c.80C>T	p.Ser27Phe	p.S27F	ENST00000371015	NM_080672.4	27	tCc/tTc	0	
CXorf66	347487		GRCh37	X	139038497	139038497	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_109																					ENST00000370540.1:c.644C>A	p.Pro215Gln	p.P215Q	ENST00000370540	NM_001013403.2	215	cCa/cAa	0	
TAS1R3	83756		GRCh37	1	1269272	1269272	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_104																					ENST00000339381.5:c.1987G>C	p.Glu663Gln	p.E663Q	ENST00000339381	NM_152228.1	663	Gaa/Caa	0	
VPS13D	55187		GRCh37	1	12398315	12398315	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_104																					ENST00000358136.3:c.8579G>C	p.Arg2860Thr	p.R2860T	ENST00000358136	NM_015378.2	2860	aGg/aCg	0	
AKR7A3	22977		GRCh37	1	19609299	19609299	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000361640.4:c.922G>C	p.Glu308Gln	p.E308Q	ENST00000361640	NM_012067.2	308	Gag/Cag	0	
SFPQ	6421		GRCh37	1	35652643	35652643	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_104																					ENST00000357214.5:c.1945C>G	p.Pro649Ala	p.P649A	ENST00000357214	NM_005066.2	649	Cca/Gca	0	
NASP	4678		GRCh37	1	46078904	46078904	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_104																					ENST00000350030.3:c.1490C>T	p.Ser497Leu	p.S497L	ENST00000350030	NM_002482.3	497	tCa/tTa	0	
FCRL1	115350		GRCh37	1	157766899	157766899	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_104																					ENST00000368176.3:c.1210G>A	p.Glu404Lys	p.E404K	ENST00000368176	NM_001159398.1	404	Gag/Aag	0	
THADA	63892		GRCh37	2	43458101	43458101	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_104																					ENST00000405006.4:c.5848G>T	p.Glu1950Ter	p.E1950*	ENST00000405006	NM_001083953.1	1950	Gaa/Taa	0	
LRP2	4036		GRCh37	2	170096284	170096284	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_104																					ENST00000263816.3:c.4047T>A	p.Asn1349Lys	p.N1349K	ENST00000263816	NM_004525.2	1349	aaT/aaA	0	
TGFBR2	7048		GRCh37	3	30648417	30648417	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000295754.5:c.42C>G	p.Ile14Met	p.I14M	ENST00000295754	NM_003242.5	14	atC/atG	0	
LZTFL1	54585		GRCh37	3	45879540	45879540	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_104																					ENST00000296135.6:c.7G>A	p.Glu3Lys	p.E3K	ENST00000296135	NM_020347.3	3	Gag/Aag	0	
NDUFAF3	25915		GRCh37	3	49059882	49059882	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_104																					ENST00000326925.6:c.181G>C	p.Asp61His	p.D61H	ENST00000326925	NM_199069.1	61	Gac/Cac	0	
SIDT1	54847		GRCh37	3	113330968	113330968	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000264852.4:c.1893C>G	p.Ile631Met	p.I631M	ENST00000264852	NM_017699.2	631	atC/atG	0	
VEPH1	79674		GRCh37	3	156979003	156979003	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_104																					ENST00000362010.2:c.2422G>A	p.Glu808Lys	p.E808K	ENST00000362010	NM_001167912.1	808	Gaa/Aaa	0	
SETD7	80854		GRCh37	4	140432950	140432950	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000274031.3:c.968G>C	p.Arg323Thr	p.R323T	ENST00000274031	NM_030648.2	323	aGa/aCa	0	
ZSWIM6	57688		GRCh37	5	60628124	60628124	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000252744.5:c.25C>G	p.Pro9Ala	p.P9A	ENST00000252744	NM_020928.1	9	Cct/Gct	0	
DMXL1	1657		GRCh37	5	118484918	118484918	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000311085.8:c.3396C>G	p.Ile1132Met	p.I1132M	ENST00000311085	NM_005509.4	1132	atC/atG	0	
RNF144B	255488		GRCh37	6	18465170	18465170	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000259939.3:c.784C>G	p.Leu262Val	p.L262V	ENST00000259939	NM_182757.3	262	Ctc/Gtc	0	
UBR2	23304		GRCh37	6	42541712	42541712	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_104																					ENST00000372899.1:c.319G>C	p.Glu107Gln	p.E107Q	ENST00000372899	NM_015255.2	107	Gag/Cag	0	
ABCC10	89845		GRCh37	6	43410714	43410714	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_104																					ENST00000372530.4:c.2233G>C	p.Glu745Gln	p.E745Q	ENST00000372530	NM_001198934.1	745	Gag/Cag	0	
PHIP	55023		GRCh37	6	79711684	79711684	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000275034.4:c.1811G>C	p.Arg604Thr	p.R604T	ENST00000275034	NM_017934.5	604	aGa/aCa	0	
KMT2C	58508		GRCh37	7	152132751	152132751	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_104																					ENST00000262189.6:c.121C>G	p.Arg41Gly	p.R41G	ENST00000262189	NM_170606.2	41	Cgc/Ggc	0	
SPIDR	23514		GRCh37	8	48511698	48511698	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_104																					ENST00000297423.4:c.1484G>C	p.Arg495Thr	p.R495T	ENST00000297423	NM_001080394.2	495	aGa/aCa	0	
RPP30	10556		GRCh37	10	92645637	92645637	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000371703.3:c.411C>G	p.Phe137Leu	p.F137L	ENST00000371703	NM_006413.4	137	ttC/ttG	0	
TPP1	1200		GRCh37	11	6638652	6638652	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000299427.6:c.388G>C	p.Glu130Gln	p.E130Q	ENST00000299427	NM_000391.3	130	Gag/Cag	0	
SCUBE2	57758		GRCh37	11	9051461	9051461	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000520467.1:c.2302G>C	p.Asp768His	p.D768H	ENST00000520467	NM_020974.2	768	Gat/Cat	0	
CKAP5	9793		GRCh37	11	46786713	46786713	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000529230.1:c.3505G>C	p.Glu1169Gln	p.E1169Q	ENST00000529230		1169	Gag/Cag	0	
GPHA2	170589		GRCh37	11	64702492	64702492	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_104																					ENST00000279168.2:c.259C>T	p.Gln87Ter	p.Q87*	ENST00000279168	NM_130769.3	87	Cag/Tag	0	
C1RL	51279		GRCh37	12	7254679	7254679	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_104																					ENST00000266542.4:c.305C>T	p.Ser102Leu	p.S102L	ENST00000266542	NM_016546.2	102	tCa/tTa	0	
CCDC63	160762		GRCh37	12	111296537	111296537	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_104																					ENST00000308208.5:c.327G>C	p.Leu109Phe	p.L109F	ENST00000308208	NM_152591.1	109	ttG/ttC	0	
CUX2	23316		GRCh37	12	111772380	111772380	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000261726.6:c.3062C>G	p.Ser1021Cys	p.S1021C	ENST00000261726	NM_015267.3	1021	tCc/tGc	0	
SETD1B	23067		GRCh37	12	122248308	122248308	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_104																					ENST00000604567.1:c.1457A>G	p.Glu486Gly	p.E486G	ENST00000604567		486	gAg/gGg	0	
LCP1	3936		GRCh37	13	46732723	46732723	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_104																					ENST00000323076.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000323076	NM_002298.4	98	Gaa/Aaa	0	
FGF14	2259		GRCh37	13	102375303	102375303	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000376143.4:c.622G>C	p.Glu208Gln	p.E208Q	ENST00000376143	NM_004115.3	208	Gaa/Caa	0	
PDCD7	10081		GRCh37	15	65425729	65425729	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000204549.4:c.391G>C	p.Asp131His	p.D131H	ENST00000204549	NM_005707.1	131	Gac/Cac	0	
ETFA	2108		GRCh37	15	76576125	76576125	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_104																					ENST00000557943.1:c.706G>A	p.Asp236Asn	p.D236N	ENST00000557943	NM_000126.3	236	Gac/Aac	0	
CERS3	204219		GRCh37	15	101009664	101009664	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000284382.4:c.764G>C	p.Gly255Ala	p.G255A	ENST00000284382	NM_178842.3	255	gGa/gCa	0	
PSMB10	5699		GRCh37	16	67968526	67968526	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000358514.4:c.759G>C	p.Gln253His	p.Q253H	ENST00000358514	NM_002801.3	253	caG/caC	0	
KARS	3735		GRCh37	16	75665348	75665348	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_104																					ENST00000302445.3:c.1218G>A	p.Met406Ile	p.M406I	ENST00000302445	NM_005548.2	406	atG/atA	0	
ZC3H18	124245		GRCh37	16	88677905	88677905	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_104																					ENST00000301011.5:c.1436A>C	p.Glu479Ala	p.E479A	ENST00000301011	NM_144604.3	479	gAg/gCg	0	
RPH3AL	9501		GRCh37	17	131572	131572	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_104																					ENST00000331302.7:c.425G>A	p.Ser142Asn	p.S142N	ENST00000331302	NM_006987.3	142	aGt/aAt	0	
SLC5A10	125206		GRCh37	17	18916689	18916689	+	intron_variant	Intron	SNP	G	G	A			brca_smc_2018_BB01_104																					ENST00000395645.3:c.983-34G>A		p.*328*	ENST00000395645	NM_001042450.2			0	
ATP6V0A1	535		GRCh37	17	40652782	40652782	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_104																					ENST00000343619.4:c.1737G>C	p.Met579Ile	p.M579I	ENST00000343619	NM_001130021.1	579	atG/atC	0	
SNX11	29916		GRCh37	17	46190662	46190662	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BB01_104																					ENST00000359238.2:c.130-1G>C		p.X44_splice	ENST00000359238	NM_013323.2	44		0	
CCDC40	55036		GRCh37	17	78032339	78032339	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000397545.4:c.1206C>G	p.Phe402Leu	p.F402L	ENST00000397545	NM_017950.3	402	ttC/ttG	0	
SGSH	6448		GRCh37	17	78184780	78184780	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_104																					ENST00000326317.6:c.980C>T	p.Ser327Leu	p.S327L	ENST00000326317	NM_000199.3	327	tCg/tTg	0	
STXBP2	6813		GRCh37	19	7707877	7707877	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000221283.5:c.969C>G	p.Ile323Met	p.I323M	ENST00000221283	NM_006949.3	323	atC/atG	0	
EPOR	2057		GRCh37	19	11492371	11492371	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000222139.6:c.582G>C	p.Gln194His	p.Q194H	ENST00000222139	NM_000121.3	194	caG/caC	0	
SERINC3	10955		GRCh37	20	43133516	43133516	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_104																					ENST00000255175.1:c.800C>G	p.Ser267Cys	p.S267C	ENST00000255175	NM_198941.1	267	tCc/tGc	0	
C20orf166			GRCh37	20	61167711	61167711	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_104																					ENST00000370527.3:c.181C>G	p.Leu61Val	p.L61V	ENST00000370527	NM_178463.3	61	Ctt/Gtt	0	
CEP104	9731		GRCh37	1	3768870	3768870	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_026																					ENST00000378230.3:c.102G>C	p.Trp34Cys	p.W34C	ENST00000378230	NM_014704.3	34	tgG/tgC	0	
UBR4	23352		GRCh37	1	19480385	19480385	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_026																					ENST00000375254.3:c.6507G>C	p.Glu2169Asp	p.E2169D	ENST00000375254	NM_020765.2	2169	gaG/gaC	0	
USP33	23032		GRCh37	1	78187551	78187551	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_026																					ENST00000357428.1:c.1715G>T	p.Cys572Phe	p.C572F	ENST00000357428		572	tGt/tTt	0	
NOTCH2	4853		GRCh37	1	120458114	120458114	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_026																					ENST00000256646.2:c.7231G>T	p.Glu2411Ter	p.E2411*	ENST00000256646	NM_024408.3	2411	Gag/Tag	0	
USH2A	7399		GRCh37	1	215940092	215940092	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_026																					ENST00000307340.3:c.10978G>T	p.Ala3660Ser	p.A3660S	ENST00000307340	NM_206933.2	3660	Gct/Tct	0	
OR2G2	81470		GRCh37	1	247751681	247751681	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_026																					ENST00000320065.1:c.20C>A	p.Thr7Asn	p.T7N	ENST00000320065	NM_001001915.1	7	aCc/aAc	0	
TDRD15	100129278		GRCh37	2	21364484	21364484	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_026																					ENST00000405799.1:c.4145A>G	p.Asn1382Ser	p.N1382S	ENST00000405799		1382	aAc/aGc	0	
PTPN4	5775		GRCh37	2	120640088	120640088	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_026																					ENST00000263708.2:c.476G>C	p.Gly159Ala	p.G159A	ENST00000263708	NM_002830.3	159	gGa/gCa	0	
R3HDM1	23518		GRCh37	2	136362453	136362453	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_026																					ENST00000264160.4:c.38C>A	p.Thr13Asn	p.T13N	ENST00000264160	NM_015361.2	13	aCt/aAt	0	
TNFAIP6	7130		GRCh37	2	152226578	152226578	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_026																					ENST00000243347.3:c.439A>G	p.Lys147Glu	p.K147E	ENST00000243347	NM_007115.3	147	Aaa/Gaa	0	
AGFG1	3267		GRCh37	2	228384764	228384764	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_026																					ENST00000310078.8:c.362A>G	p.Tyr121Cys	p.Y121C	ENST00000310078	NM_004504.4	121	tAt/tGt	0	
IFT122	55764		GRCh37	3	129188193	129188193	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_026																					ENST00000348417.2:c.749G>A	p.Arg250His	p.R250H	ENST00000348417	NM_052989.2	250	cGt/cAt	0	
PHC3	80012		GRCh37	3	169846858	169846858	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_026																					ENST00000494943.1:c.1366C>G	p.Leu456Val	p.L456V	ENST00000494943		456	Ctt/Gtt	0	
FAM149A	25854		GRCh37	4	187088386	187088386	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_026																					ENST00000356371.5:c.2218C>T	p.His740Tyr	p.H740Y	ENST00000356371		740	Cac/Tac	0	
RANBP3L	202151		GRCh37	5	36270061	36270061	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_026																					ENST00000296604.3:c.182C>G	p.Ala61Gly	p.A61G	ENST00000296604	NM_145000.3	61	gCa/gGa	0	
SLC22A4	6583		GRCh37	5	131663042	131663042	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_026																					ENST00000200652.3:c.897A>C	p.Lys299Asn	p.K299N	ENST00000200652	NM_003059.2	299	aaA/aaC	0	
TRPC7	57113		GRCh37	5	135692505	135692505	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_026																					ENST00000513104.1:c.571G>A	p.Glu191Lys	p.E191K	ENST00000513104	NM_020389.2	191	Gag/Aag	0	
PCDHA5	56143		GRCh37	5	140203413	140203413	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_026																					ENST00000529859.1:c.2053G>A	p.Ala685Thr	p.A685T	ENST00000529859	NM_018908.2	685	Gct/Act	0	
MGAT4B	11282		GRCh37	5	179226616	179226616	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_026																					ENST00000292591.7:c.931G>C	p.Asp311His	p.D311H	ENST00000292591	NM_014275.4	311	Gac/Cac	0	
VEGFA	7422		GRCh37	6	43748544	43748544	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_026																					ENST00000523873.1:c.498C>A	p.Tyr166Ter	p.Y166*	ENST00000523873		166	taC/taA	0	
DST	667		GRCh37	6	56515830	56515830	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_026																					ENST00000312431.6:c.695A>G	p.Asp232Gly	p.D232G	ENST00000312431		232	gAt/gGt	0	
SENP6	26054		GRCh37	6	76423413	76423413	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_026																					ENST00000447266.2:c.3001G>C	p.Val1001Leu	p.V1001L	ENST00000447266	NM_015571.2	1001	Gtt/Ctt	0	
KIAA1244			GRCh37	6	138628535	138628535	+	splice_donor_variant	Splice_Site	SNP	G	G	T			brca_smc_2018_BB01_026																					ENST00000251691.4:c.3973+1G>T		p.X1325_splice	ENST00000251691	NM_020340.4	1325		0	
SAMD9L	219285		GRCh37	7	92765084	92765084	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_026																					ENST00000318238.4:c.201G>C	p.Leu67Phe	p.L67F	ENST00000318238	NM_152703.2	67	ttG/ttC	0	
CFTR	1080		GRCh37	7	117176697	117176697	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_026																					ENST00000003084.6:c.839C>T	p.Ala280Val	p.A280V	ENST00000003084	NM_000492.3	280	gCa/gTa	0	
TRPA1	8989		GRCh37	8	72935341	72935341	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_026																					ENST00000262209.4:c.3160C>A	p.Leu1054Ile	p.L1054I	ENST00000262209	NM_007332.2	1054	Ctt/Att	0	
RAD54B	25788		GRCh37	8	95384418	95384418	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_026																					ENST00000336148.5:c.2713A>C	p.Thr905Pro	p.T905P	ENST00000336148	NM_012415.3	905	Act/Cct	0	
CCNE2	9134		GRCh37	8	95897733	95897733	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_026																					ENST00000308108.4:c.654C>A	p.Cys218Ter	p.C218*	ENST00000308108	NM_057749.2	218	tgC/tgA	0	
TRAPPC9	83696		GRCh37	8	141034145	141034145	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_026																					ENST00000438773.2:c.2588C>A	p.Ser863Tyr	p.S863Y	ENST00000438773	NM_001160372.1	863	tCt/tAt	0	
TMOD1	7111		GRCh37	9	100331186	100331186	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_026																					ENST00000259365.4:c.737A>G	p.Glu246Gly	p.E246G	ENST00000259365	NM_003275.3	246	gAg/gGg	0	
C9orf50	375759		GRCh37	9	132375501	132375501	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_026																					ENST00000372478.4:c.1073C>T	p.Ser358Phe	p.S358F	ENST00000372478	NM_199350.3	358	tCt/tTt	0	
CHAT	1103		GRCh37	10	50870743	50870743	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_026																					ENST00000337653.2:c.1892C>A	p.Ala631Asp	p.A631D	ENST00000337653	NM_020549.4	631	gCc/gAc	0	
KIF20B	9585		GRCh37	10	91484868	91484868	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_026																					ENST00000371728.3:c.1954C>G	p.Arg652Gly	p.R652G	ENST00000371728	NM_001284259.1	652	Cga/Gga	0	
PHRF1	57661		GRCh37	11	608520	608520	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_026																					ENST00000264555.5:c.3064C>A	p.Arg1022Ser	p.R1022S	ENST00000264555	NM_020901.2	1022	Cgc/Agc	0	
CDC42BPG	55561		GRCh37	11	64606170	64606170	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_026																					ENST00000342711.5:c.1081G>A	p.Asp361Asn	p.D361N	ENST00000342711	NM_017525.2	361	Gac/Aac	0	
PC	5091		GRCh37	11	66617425	66617425	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_026																					ENST00000393955.2:c.2881G>A	p.Glu961Lys	p.E961K	ENST00000393955	NM_022172.2	961	Gaa/Aaa	0	
ACY3	91703		GRCh37	11	67410260	67410260	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_026																					ENST00000255082.3:c.895G>C	p.Glu299Gln	p.E299Q	ENST00000255082	NM_080658.1	299	Gag/Cag	0	
TMPRSS4	56649		GRCh37	11	117982497	117982497	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_026																					ENST00000437212.3:c.625G>A	p.Glu209Lys	p.E209K	ENST00000437212		209	Gag/Aag	0	
CNOT2	4848		GRCh37	12	70723211	70723211	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_026																					ENST00000229195.3:c.247G>A	p.Gly83Ser	p.G83S	ENST00000229195	NM_014515.5	83	Ggc/Agc	0	
TAOK3	51347		GRCh37	12	118673379	118673379	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_026																					ENST00000392533.3:c.535G>A	p.Val179Met	p.V179M	ENST00000392533	NM_016281.3	179	Gtg/Atg	0	
AMER2	219287		GRCh37	13	25745148	25745148	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_026																					ENST00000515384.1:c.610C>T	p.His204Tyr	p.H204Y	ENST00000515384		204	Cac/Tac	0	
KBTBD6	89890		GRCh37	13	41705948	41705948	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_026																					ENST00000379485.1:c.700G>T	p.Glu234Ter	p.E234*	ENST00000379485	NM_152903.4	234	Gag/Tag	0	
PNN	5411		GRCh37	14	39648416	39648416	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_026																					ENST00000216832.4:c.620G>C	p.Arg207Pro	p.R207P	ENST00000216832	NM_002687.3	207	cGg/cCg	0	
NRXN3	9369		GRCh37	14	80164270	80164270	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_026																					ENST00000557594.1:c.899C>T	p.Ala300Val	p.A300V	ENST00000557594		300	gCc/gTc	0	
SEMA6D	80031		GRCh37	15	48063734	48063734	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_026																					ENST00000316364.5:c.2974C>T	p.Gln992Ter	p.Q992*	ENST00000316364	NM_153618.1	992	Cag/Tag	0	
GLCE	26035		GRCh37	15	69561036	69561036	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_026																					ENST00000261858.2:c.1307C>T	p.Ser436Phe	p.S436F	ENST00000261858	NM_015554.1	436	tCt/tTt	0	
ZNF423	23090		GRCh37	16	49764726	49764726	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_026																					ENST00000262383.2:c.233C>G	p.Ser78Cys	p.S78C	ENST00000262383		78	tCt/tGt	0	
CDH11	1009		GRCh37	16	65032744	65032744	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_026																					ENST00000268603.4:c.244G>T	p.Asp82Tyr	p.D82Y	ENST00000268603	NM_001797.2	82	Gac/Tac	0	
TP53	7157		GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			brca_smc_2018_BB01_026																					ENST00000269305.4:c.376-2A>C		p.X126_splice	ENST00000269305	NM_001126112.2	126		0	
CTC1	80169		GRCh37	17	8139170	8139170	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_026																					ENST00000315684.8:c.1185G>T	p.Met395Ile	p.M395I	ENST00000315684	NM_025099.5	395	atG/atT	0	
PFAS	5198		GRCh37	17	8161176	8161176	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_026																					ENST00000314666.6:c.1127C>T	p.Ala376Val	p.A376V	ENST00000314666	NM_012393.2	376	gCc/gTc	0	
DNAH9	1770		GRCh37	17	11583257	11583257	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_026																					ENST00000262442.4:c.3537T>A	p.Tyr1179Ter	p.Y1179*	ENST00000262442	NM_001372.3	1179	taT/taA	0	
SPAG5	10615		GRCh37	17	26919984	26919984	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_026																					ENST00000321765.5:c.278G>T	p.Cys93Phe	p.C93F	ENST00000321765	NM_006461.3	93	tGt/tTt	0	
BLMH	642		GRCh37	17	28613849	28613849	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_026																					ENST00000261714.6:c.535G>T	p.Asp179Tyr	p.D179Y	ENST00000261714	NM_000386.3	179	Gat/Tat	0	
SAFB2	9667		GRCh37	19	5587734	5587734	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_026																					ENST00000252542.4:c.2683G>A	p.Ala895Thr	p.A895T	ENST00000252542	NM_014649.2	895	Gca/Aca	0	
MUC16	94025		GRCh37	19	9068010	9068010	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_026																					ENST00000397910.4:c.19436A>G	p.His6479Arg	p.H6479R	ENST00000397910	NM_024690.2	6479	cAt/cGt	0	
OR1M1	125963		GRCh37	19	9204489	9204489	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_026																					ENST00000429566.3:c.569C>T	p.Thr190Met	p.T190M	ENST00000429566	NM_001004456.1	190	aCg/aTg	0	
USE1	55850		GRCh37	19	17327053	17327053	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_026																					ENST00000263897.5:c.307G>A	p.Val103Met	p.V103M	ENST00000263897	NM_018467.3	103	Gtg/Atg	0	
PLEKHG2	64857		GRCh37	19	39907588	39907588	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_026																					ENST00000425673.1:c.692G>C	p.Ser231Thr	p.S231T	ENST00000425673		231	aGc/aCc	0	
C20orf78	100128496		GRCh37	20	18790509	18790509	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_026																					ENST00000278779.4:c.367G>A	p.Val123Ile	p.V123I	ENST00000278779	NM_001242671.1	123	Gtt/Att	0	
SYNDIG1	79953		GRCh37	20	24524067	24524067	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_026																					ENST00000376862.3:c.334G>C	p.Glu112Gln	p.E112Q	ENST00000376862	NM_024893.2	112	Gag/Cag	0	
MYH7B	57644		GRCh37	20	33575381	33575381	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_026																					ENST00000262873.7:c.1295T>G	p.Leu432Arg	p.L432R	ENST00000262873	NM_020884.3	432	cTg/cGg	0	
CLIC6	54102		GRCh37	21	36088739	36088739	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_026																					ENST00000360731.3:c.2074A>G	p.Ile692Val	p.I692V	ENST00000360731		692	Att/Gtt	0	
MCM3AP	8888		GRCh37	21	47660832	47660832	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_026																					ENST00000291688.1:c.5526G>T	p.Glu1842Asp	p.E1842D	ENST00000291688	NM_003906.3	1842	gaG/gaT	0	
SERPIND1	3053		GRCh37	22	21134213	21134213	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_026																					ENST00000215727.5:c.613C>A	p.Leu205Met	p.L205M	ENST00000215727	NM_000185.3	205	Ctg/Atg	0	
BEND2	139105		GRCh37	X	18220004	18220004	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_026																					ENST00000380033.4:c.964C>G	p.Pro322Ala	p.P322A	ENST00000380033	NM_153346.4	322	Cca/Gca	0	
ACTRT1	139741		GRCh37	X	127186136	127186136	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_026																					ENST00000371124.3:c.50G>C	p.Gly17Ala	p.G17A	ENST00000371124	NM_138289.3	17	gGt/gCt	0	
OCRL	4952		GRCh37	X	128701258	128701258	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_026																					ENST00000371113.4:c.1384G>T	p.Ala462Ser	p.A462S	ENST00000371113	NM_000276.3	462	Gct/Tct	0	
ARHGAP4	393		GRCh37	X	153179250	153179250	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_026																					ENST00000350060.5:c.1116G>C	p.Gln372His	p.Q372H	ENST00000350060	NM_001666.4	372	caG/caC	0	
ARID1A	8289		GRCh37	1	27023432	27023432	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR457																					ENST00000324856.7:c.538G>C	p.Gly180Arg	p.G180R	ENST00000324856	NM_006015.4	180	Ggc/Cgc	0	
HIPK1	204851		GRCh37	1	114483886	114483886	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR457																					ENST00000369558.1:c.881C>A	p.Pro294Gln	p.P294Q	ENST00000369558		294	cCa/cAa	0	
EPHX1	2052		GRCh37	1	226032978	226032978	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR457																					ENST00000272167.5:c.1298C>T	p.Ala433Val	p.A433V	ENST00000272167	NM_001136018.2	433	gCg/gTg	0	
RYR2	6262		GRCh37	1	237921017	237921017	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR457																					ENST00000366574.2:c.11266G>T	p.Ala3756Ser	p.A3756S	ENST00000366574	NM_001035.2	3756	Gca/Tca	0	
GLI2	2736		GRCh37	2	121746042	121746042	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR457																					ENST00000361492.4:c.2552C>G	p.Ser851Cys	p.S851C	ENST00000361492	NM_005270.4	851	tCc/tGc	0	
GLI2	2736		GRCh37	2	121746117	121746117	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR457																					ENST00000361492.4:c.2627C>G	p.Ser876Cys	p.S876C	ENST00000361492	NM_005270.4	876	tCc/tGc	0	
GLI2	2736		GRCh37	2	121747193	121747193	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR457																					ENST00000361492.4:c.3703C>G	p.Pro1235Ala	p.P1235A	ENST00000361492	NM_005270.4	1235	Cct/Gct	0	
SCN3A	6328		GRCh37	2	165987858	165987858	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR457																					ENST00000360093.3:c.2461C>T	p.Gln821Ter	p.Q821*	ENST00000360093	NM_001081677.1	821	Caa/Taa	0	
XIRP2	129446		GRCh37	2	168100111	168100111	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR457																					ENST00000409195.1:c.2209G>A	p.Glu737Lys	p.E737K	ENST00000409195	NM_152381.5	737	Gaa/Aaa	0	
LRP2	4036		GRCh37	2	170063258	170063258	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR457																					ENST00000263816.3:c.6972A>T	p.Arg2324Ser	p.R2324S	ENST00000263816	NM_004525.2	2324	agA/agT	0	
TTN	7273		GRCh37	2	179458763	179458763	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR457																					ENST00000591111.1:c.53434G>C	p.Asp17812His	p.D17812H	ENST00000591111		17812	Gat/Cat	0	
TTN	7273		GRCh37	2	179462438	179462438	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR457																					ENST00000591111.1:c.52448T>G	p.Val17483Gly	p.V17483G	ENST00000591111		17483	gTc/gGc	0	
BMPR2	659		GRCh37	2	203420748	203420748	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR457																					ENST00000374580.4:c.2360G>C	p.Gly787Ala	p.G787A	ENST00000374580	NM_001204.6	787	gGa/gCa	0	
ATP2B2	491		GRCh37	3	10442756	10442756	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR457																					ENST00000352432.4:c.662T>A	p.Leu221His	p.L221H	ENST00000352432		221	cTc/cAc	0	
LRRFIP2	9209		GRCh37	3	37146980	37146980	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR457																					ENST00000336686.4:c.749C>G	p.Ser250Cys	p.S250C	ENST00000336686		250	tCt/tGt	0	
BAP1	8314		GRCh37	3	52441419	52441419	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR457																					ENST00000460680.1:c.433G>A	p.Ala145Thr	p.A145T	ENST00000460680	NM_004656.3	145	Gcc/Acc	0	
ACOX3	8310		GRCh37	4	8390965	8390965	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR457																					ENST00000356406.5:c.1472C>A	p.Ala491Asp	p.A491D	ENST00000356406	NM_003501.2	491	gCc/gAc	0	
FAT4	79633		GRCh37	4	126238063	126238063	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR457																					ENST00000394329.3:c.497C>T	p.Ser166Leu	p.S166L	ENST00000394329	NM_024582.4	166	tCa/tTa	0	
HTR1A	3350		GRCh37	5	63256567	63256567	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR457																					ENST00000323865.3:c.980G>A	p.Arg327His	p.R327H	ENST00000323865	NM_000524.3	327	cGc/cAc	0	
MOXD1	26002		GRCh37	6	132693763	132693763	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR457																					ENST00000367963.3:c.647A>T	p.Lys216Met	p.K216M	ENST00000367963	NM_015529.2	216	aAg/aTg	0	
CAMK2B	816		GRCh37	7	44298492	44298492	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR457																					ENST00000395749.2:c.254T>A	p.Phe85Tyr	p.F85Y	ENST00000395749	NM_001220.4	85	tTc/tAc	0	
ATXN7L1	222255		GRCh37	7	105279984	105279984	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR457																					ENST00000419735.3:c.895G>A	p.Val299Ile	p.V299I	ENST00000419735	NM_020725.1	299	Gta/Ata	0	
ATP6V0A4	50617		GRCh37	7	138430003	138430003	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR457																					ENST00000310018.2:c.1343G>A	p.Gly448Glu	p.G448E	ENST00000310018	NM_020632.2	448	gGg/gAg	0	
PRKDC	5591		GRCh37	8	48771443	48771443	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR457																					ENST00000314191.2:c.6309G>A	p.Met2103Ile	p.M2103I	ENST00000314191	NM_006904.6	2103	atG/atA	0	
SLCO5A1	81796		GRCh37	8	70650282	70650282	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR457																					ENST00000260126.4:c.1416C>G	p.Ile472Met	p.I472M	ENST00000260126	NM_030958.2	472	atC/atG	0	
TNC	3371		GRCh37	9	117838717	117838717	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR457																					ENST00000350763.4:c.2812G>A	p.Val938Ile	p.V938I	ENST00000350763	NM_002160.3	938	Gtt/Att	0	
SLC2A8	29988		GRCh37	9	130167123	130167123	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR457																					ENST00000373371.3:c.1003G>T	p.Ala335Ser	p.A335S	ENST00000373371	NM_014580.4	335	Gcc/Tcc	0	
JMJD1C	221037		GRCh37	10	64966735	64966735	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR457																					ENST00000399262.2:c.4694C>G	p.Thr1565Ser	p.T1565S	ENST00000399262	NM_032776.1	1565	aCt/aGt	0	
LIN7C	55327		GRCh37	11	27528292	27528292	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR457																					ENST00000278193.2:c.8C>A	p.Ala3Glu	p.A3E	ENST00000278193	NM_018362.3	3	gCg/gAg	0	
DDB2	1643		GRCh37	11	47256934	47256934	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR457																					ENST00000256996.4:c.994C>G	p.Arg332Gly	p.R332G	ENST00000256996	NM_000107.2	332	Cgt/Ggt	0	
OLFM4	10562		GRCh37	13	53624826	53624826	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR457																					ENST00000219022.2:c.1453C>A	p.Pro485Thr	p.P485T	ENST00000219022	NM_006418.4	485	Cct/Act	0	
OLFM4	10562		GRCh37	13	53624827	53624827	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR457																					ENST00000219022.2:c.1454C>G	p.Pro485Arg	p.P485R	ENST00000219022	NM_006418.4	485	cCt/cGt	0	
FARP1	10160		GRCh37	13	98996117	98996117	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR457																					ENST00000319562.6:c.273C>G	p.Ile91Met	p.I91M	ENST00000319562	NM_005766.2	91	atC/atG	0	
VSX2	338917		GRCh37	14	74707911	74707911	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR457																					ENST00000261980.2:c.397C>T	p.Arg133Ter	p.R133*	ENST00000261980	NM_182894.2	133	Cga/Tga	0	
CLMN	79789		GRCh37	14	95690150	95690150	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR457																					ENST00000298912.4:c.187C>A	p.Gln63Lys	p.Q63K	ENST00000298912	NM_024734.3	63	Caa/Aaa	0	
MYH11	4629		GRCh37	16	15841977	15841977	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR457																					ENST00000300036.5:c.2107G>A	p.Gly703Arg	p.G703R	ENST00000300036	NM_002474.2	703	Ggg/Agg	0	
PIEZO1	9780		GRCh37	16	88787724	88787724	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR457																					ENST00000301015.9:c.5518G>C	p.Asp1840His	p.D1840H	ENST00000301015	NM_001142864.2	1840	Gac/Cac	0	
VPS25	84313		GRCh37	17	40931040	40931040	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR457																					ENST00000253794.2:c.484G>A	p.Ala162Thr	p.A162T	ENST00000253794	NM_032353.3	162	Gcc/Acc	0	
LPO	4025		GRCh37	17	56326982	56326982	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR457																					ENST00000262290.4:c.499G>C	p.Glu167Gln	p.E167Q	ENST00000262290	NM_006151.2	167	Gag/Cag	0	
KCNJ2	3759		GRCh37	17	68171461	68171461	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR457																					ENST00000243457.3:c.281T>G	p.Leu94Arg	p.L94R	ENST00000243457	NM_000891.2	94	cTg/cGg	0	
KCNJ2	3759		GRCh37	17	68171670	68171670	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR457																					ENST00000243457.3:c.490C>A	p.Gln164Lys	p.Q164K	ENST00000243457	NM_000891.2	164	Cag/Aag	0	
MC2R	4158		GRCh37	18	13885385	13885385	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR457																					ENST00000327606.3:c.133G>A	p.Val45Ile	p.V45I	ENST00000327606	NM_000529.2	45	Gtc/Atc	0	
ATP4A	495		GRCh37	19	36045841	36045841	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR457																					ENST00000262623.3:c.2464G>A	p.Glu822Lys	p.E822K	ENST00000262623	NM_000704.2	822	Gaa/Aaa	0	
ZNF578	147660		GRCh37	19	53014980	53014980	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR457																					ENST00000421239.2:c.1346A>G	p.His449Arg	p.H449R	ENST00000421239	NM_001099694.1	449	cAt/cGt	0	
ZNF582	147948		GRCh37	19	56896492	56896492	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR457																					ENST00000301310.4:c.294A>C	p.Glu98Asp	p.E98D	ENST00000301310	NM_144690.1	98	gaA/gaC	0	
ZIK1	284307		GRCh37	19	58101973	58101973	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR457																					ENST00000597850.1:c.794G>C	p.Arg265Thr	p.R265T	ENST00000597850	NM_001010879.2	265	aGg/aCg	0	
APP	351		GRCh37	21	27423368	27423368	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR457																					ENST00000346798.3:c.610G>A	p.Asp204Asn	p.D204N	ENST00000346798	NM_000484.3	204	Gat/Aat	0	
ADAMTS5	11096		GRCh37	21	28338241	28338241	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR457																					ENST00000284987.5:c.470C>T	p.Ala157Val	p.A157V	ENST00000284987	NM_007038.3	157	gCg/gTg	0	
CLTCL1	8218		GRCh37	22	19209103	19209103	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR457																					ENST00000427926.1:c.2593C>T	p.Gln865Ter	p.Q865*	ENST00000427926		865	Cag/Tag	0	
EP300	2033		GRCh37	22	41554417	41554417	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			brca_smc_2018_BR457																					ENST00000263253.7:c.3503T>A	p.Leu1168Ter	p.L1168*	ENST00000263253	NM_001429.3	1168	tTg/tAg	0	
WBP2NL	164684		GRCh37	22	42422803	42422803	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR457																					ENST00000328823.9:c.548G>C	p.Gly183Ala	p.G183A	ENST00000328823	NM_152613.2	183	gGa/gCa	0	
MXRA5	25878		GRCh37	X	3242630	3242630	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR457																					ENST00000217939.6:c.1096G>C	p.Glu366Gln	p.E366Q	ENST00000217939	NM_015419.3	366	Gag/Cag	0	
FAM47C	442444		GRCh37	X	37028608	37028608	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR457																					ENST00000358047.3:c.2125A>T	p.Thr709Ser	p.T709S	ENST00000358047	NM_001013736.2	709	Act/Tct	0	
FATE1	89885		GRCh37	X	150884646	150884646	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR457																					ENST00000370350.3:c.55G>T	p.Glu19Ter	p.E19*	ENST00000370350	NM_033085.2	19	Gaa/Taa	0	
C1orf226	400793		GRCh37	1	162353052	162353052	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR371																					ENST00000458626.2:c.398C>A	p.Thr133Asn	p.T133N	ENST00000458626	NM_001085375.1	133	aCc/aAc	0	
WDR92	116143		GRCh37	2	68384565	68384565	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR371																					ENST00000295121.6:c.11T>C	p.Phe4Ser	p.F4S	ENST00000295121	NM_138458.3	4	tTc/tCc	0	
RND3	390		GRCh37	2	151343225	151343225	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR371																					ENST00000263895.4:c.221G>A	p.Ser74Asn	p.S74N	ENST00000263895	NM_005168.4	74	aGc/aAc	0	
GPR156	165829		GRCh37	3	119912157	119912157	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR371																					ENST00000315843.3:c.348G>T	p.Met116Ile	p.M116I	ENST00000315843	NM_153002.2	116	atG/atT	0	
PIK3CA	5290		GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR371																					ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa	0	
CKMT2	1160		GRCh37	5	80547039	80547039	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR371																					ENST00000254035.4:c.88T>G	p.Tyr30Asp	p.Y30D	ENST00000254035		30	Tac/Gac	0	
YTHDC2	64848		GRCh37	5	112849601	112849601	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR371																					ENST00000161863.4:c.9G>T	p.Arg3Ser	p.R3S	ENST00000161863	NM_022828.3	3	agG/agT	0	
PCDHA12	56137		GRCh37	5	140256384	140256384	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR371																					ENST00000398631.2:c.1327G>T	p.Val443Leu	p.V443L	ENST00000398631	NM_018903.2	443	Gtg/Ttg	0	
SUGCT	79783		GRCh37	7	40498711	40498711	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR371																					ENST00000335693.4:c.921G>T	p.Leu307Phe	p.L307F	ENST00000335693	NM_001193313.1	307	ttG/ttT	0	
SEMA3C	10512		GRCh37	7	80430076	80430076	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BR371																					ENST00000265361.3:c.983C>G	p.Ser328Ter	p.S328*	ENST00000265361	NM_006379.3	328	tCa/tGa	0	
MCM4	4173		GRCh37	8	48883270	48883270	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR371																					ENST00000262105.2:c.1634C>T	p.Ala545Val	p.A545V	ENST00000262105	NM_005914.3	545	gCg/gTg	0	
PHRF1	57661		GRCh37	11	609168	609168	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR371																					ENST00000264555.5:c.3712G>C	p.Ala1238Pro	p.A1238P	ENST00000264555	NM_020901.2	1238	Gcc/Ccc	0	
PDE2A	5138		GRCh37	11	72300794	72300794	+	splice_donor_variant	Splice_Site	SNP	C	C	T			brca_smc_2018_BR371																					ENST00000334456.5:c.873+1G>A		p.X291_splice	ENST00000334456	NM_002599.4	291		0	
C11orf88	399949		GRCh37	11	111386271	111386271	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR371																					ENST00000375618.4:c.262A>C	p.Ser88Arg	p.S88R	ENST00000375618	NM_001100388.1	88	Agt/Cgt	0	
MIP	4284		GRCh37	12	56848327	56848327	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR371																					ENST00000257979.4:c.71T>C	p.Val24Ala	p.V24A	ENST00000257979	NM_012064.3	24	gTc/gCc	0	
RB1	5925		GRCh37	13	48878142	48878142	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR371																					ENST00000267163.4:c.94G>A	p.Asp32Asn	p.D32N	ENST00000267163	NM_000321.2	32	Gac/Aac	0	
TMEM87A	25963		GRCh37	15	42519102	42519102	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR371																					ENST00000389834.4:c.1305G>A	p.Trp435Ter	p.W435*	ENST00000389834	NM_015497.3	435	tgG/tgA	0	
DUOX1	53905		GRCh37	15	45444107	45444107	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR371																					ENST00000321429.4:c.3050C>T	p.Ala1017Val	p.A1017V	ENST00000321429	NM_017434.3	1017	gCg/gTg	0	
CTCF	10664		GRCh37	16	67663329	67663329	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR371																					ENST00000264010.4:c.1730G>A	p.Cys577Tyr	p.C577Y	ENST00000264010	NM_006565.3	577	tGt/tAt	0	
DNAH2	146754		GRCh37	17	7733762	7733762	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR371																					ENST00000389173.2:c.11998C>A	p.Gln4000Lys	p.Q4000K	ENST00000389173	NM_020877.2	4000	Cag/Aag	0	
EFTUD2	9343		GRCh37	17	42932044	42932044	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR371																					ENST00000426333.2:c.2139G>T	p.Lys713Asn	p.K713N	ENST00000426333	NM_001142605.1	713	aaG/aaT	0	
TSHZ3	57616		GRCh37	19	31769903	31769903	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR371																					ENST00000240587.4:c.796G>T	p.Glu266Ter	p.E266*	ENST00000240587	NM_020856.2	266	Gaa/Taa	0	
BLVRB	645		GRCh37	19	40964370	40964370	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR371																					ENST00000263368.4:c.162T>A	p.Asp54Glu	p.D54E	ENST00000263368	NM_000713.2	54	gaT/gaA	0	
SIGLEC12	89858		GRCh37	19	52000147	52000147	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR371																					ENST00000291707.3:c.1586G>T	p.Gly529Val	p.G529V	ENST00000291707	NM_053003.2	529	gGc/gTc	0	
C20orf144	128864		GRCh37	20	32251549	32251549	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR371																					ENST00000375222.3:c.338G>T	p.Arg113Met	p.R113M	ENST00000375222	NM_080825.3	113	aGg/aTg	0	
NTRK1	4914		GRCh37	1	156851390	156851390	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR355																					ENST00000524377.1:c.2347G>T	p.Ala783Ser	p.A783S	ENST00000524377	NM_002529.3	783	Gcc/Tcc	0	
CAMSAP2	23271		GRCh37	1	200827113	200827113	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR355																					ENST00000236925.4:c.4396A>G	p.Ile1466Val	p.I1466V	ENST00000236925		1466	Att/Gtt	0	
KIF1A	547		GRCh37	2	241679744	241679744	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR355																					ENST00000320389.7:c.3484C>T	p.Pro1162Ser	p.P1162S	ENST00000320389	NM_004321.6	1162	Cca/Tca	0	
PIK3CA	5290		GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR355																					ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag	0	
MAP3K1	4214		GRCh37	5	56161209	56161209	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR355																					ENST00000399503.3:c.1078T>G	p.Phe360Val	p.F360V	ENST00000399503	NM_005921.1	360	Ttt/Gtt	0	
SLC36A3	285641		GRCh37	5	150663650	150663650	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR355																					ENST00000335230.3:c.929G>A	p.Gly310Glu	p.G310E	ENST00000335230	NM_181774.3	310	gGg/gAg	0	
ZKSCAN8	7745		GRCh37	6	28121015	28121015	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR355																					ENST00000330236.6:c.957G>C	p.Glu319Asp	p.E319D	ENST00000330236	NM_001278122.1	319	gaG/gaC	0	
RP1	6101		GRCh37	8	55538745	55538745	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR355																					ENST00000220676.1:c.2303C>T	p.Ser768Phe	p.S768F	ENST00000220676	NM_006269.1	768	tCc/tTc	0	
GRID1	2894		GRCh37	10	87898626	87898626	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR355																					ENST00000327946.7:c.676C>T	p.Arg226Cys	p.R226C	ENST00000327946	NM_017551.2	226	Cgc/Tgc	0	
LGR4	55366		GRCh37	11	27493720	27493720	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR355																					ENST00000379214.4:c.130T>C	p.Ser44Pro	p.S44P	ENST00000379214	NM_018490.2	44	Tcc/Ccc	0	
ZC3H13	23091		GRCh37	13	46541927	46541927	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR355																					ENST00000242848.4:c.4033C>T	p.Arg1345Ter	p.R1345*	ENST00000242848		1345	Cga/Tga	0	
ITGAL	3683		GRCh37	16	30495174	30495174	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR355																					ENST00000356798.6:c.749G>T	p.Gly250Val	p.G250V	ENST00000356798	NM_002209.2	250	gGg/gTg	0	
RNF213	57674		GRCh37	17	78320720	78320720	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR355																					ENST00000582970.1:c.8585C>T	p.Pro2862Leu	p.P2862L	ENST00000582970	NM_001256071.1	2862	cCg/cTg	0	
PLK5	126520		GRCh37	19	1528101	1528101	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR355																					ENST00000334770.4:c.169G>T	p.Asp57Tyr	p.D57Y	ENST00000334770		57	Gac/Tac	0	
MKNK2	2872		GRCh37	19	2041987	2041987	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR355																					ENST00000250896.3:c.797G>A	p.Ser266Asn	p.S266N	ENST00000250896	NM_199054.2	266	aGc/aAc	0	
TSPYL2	64061		GRCh37	X	53115367	53115367	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR355																					ENST00000375442.4:c.1793A>G	p.Asp598Gly	p.D598G	ENST00000375442	NM_022117.3	598	gAt/gGt	0	
LRRC7	57554		GRCh37	1	70504247	70504247	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_116																					ENST00000035383.5:c.2626G>T	p.Glu876Ter	p.E876*	ENST00000035383	NM_020794.2	876	Gaa/Taa	0	
RYR2	6262		GRCh37	1	237780706	237780706	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_116																					ENST00000366574.2:c.5836G>T	p.Glu1946Ter	p.E1946*	ENST00000366574	NM_001035.2	1946	Gaa/Taa	0	
MYT1L	23040		GRCh37	2	1926363	1926363	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_116																					ENST00000399161.2:c.1178C>G	p.Ser393Trp	p.S393W	ENST00000399161	NM_015025.2	393	tCg/tGg	0	
CNNM3	26505		GRCh37	2	97492674	97492674	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_116																					ENST00000305510.3:c.1474A>G	p.Ile492Val	p.I492V	ENST00000305510	NM_017623.4	492	Atc/Gtc	0	
TTN	7273		GRCh37	2	179411897	179411897	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_116																					ENST00000591111.1:c.89432C>T	p.Thr29811Ile	p.T29811I	ENST00000591111		29811	aCa/aTa	0	
CPS1	1373		GRCh37	2	211469901	211469901	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_116																					ENST00000233072.5:c.1912C>G	p.Arg638Gly	p.R638G	ENST00000233072	NM_001875.4	638	Cga/Gga	0	
USP37	57695		GRCh37	2	219341640	219341640	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_116																					ENST00000258399.3:c.1966C>A	p.Leu656Ile	p.L656I	ENST00000258399	NM_020935.2	656	Cta/Ata	0	
GTPBP8	29083		GRCh37	3	112711889	112711889	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_116																					ENST00000383678.2:c.353G>A	p.Arg118Lys	p.R118K	ENST00000383678	NM_014170.2	118	aGa/aAa	0	
LRRIQ4	344657		GRCh37	3	169540512	169540512	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_116																					ENST00000340806.6:c.803G>T	p.Arg268Leu	p.R268L	ENST00000340806	NM_001080460.1	268	cGc/cTc	0	
PIK3CA	5290		GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_116																					ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag	0	
C3orf70	285382		GRCh37	3	184870595	184870595	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_116																					ENST00000335012.2:c.17C>T	p.Ser6Leu	p.S6L	ENST00000335012	NM_001025266.1	6	tCg/tTg	0	
SENP5	205564		GRCh37	3	196612569	196612569	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_116																					ENST00000323460.5:c.517G>T	p.Glu173Ter	p.E173*	ENST00000323460	NM_152699.4	173	Gag/Tag	0	
FAM149A	25854		GRCh37	4	187088401	187088401	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_116																					ENST00000356371.5:c.2233C>T	p.Gln745Ter	p.Q745*	ENST00000356371		745	Caa/Taa	0	
ADAMTS6	11174		GRCh37	5	64747992	64747992	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_116																					ENST00000381055.3:c.895G>A	p.Val299Met	p.V299M	ENST00000381055	NM_197941.2	299	Gtg/Atg	0	
CAMK2A	815		GRCh37	5	149602772	149602772	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_116																					ENST00000348628.6:c.1213C>T	p.Arg405Trp	p.R405W	ENST00000348628	NM_171825.2	405	Cgg/Tgg	0	
OR2J2	26707		GRCh37	6	29141521	29141521	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_116																					ENST00000377167.2:c.109C>A	p.Leu37Met	p.L37M	ENST00000377167	NM_030905.2	37	Ctg/Atg	0	
PBX2	5089		GRCh37	6	32157605	32157605	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_116																					ENST00000375050.4:c.88G>A	p.Glu30Lys	p.E30K	ENST00000375050	NM_002586.4	30	Gag/Aag	0	
GPR115			GRCh37	6	47682620	47682620	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_116																					ENST00000283303.2:c.1639G>C	p.Glu547Gln	p.E547Q	ENST00000283303	NM_153838.3	547	Gag/Cag	0	
HMGCLL1	54511		GRCh37	6	55378995	55378995	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			brca_smc_2018_BB01_116																					ENST00000398661.2:c.484-1G>A		p.X162_splice	ENST00000398661	NM_019036.2	162		0	
REV3L	5980		GRCh37	6	111694084	111694084	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_116																					ENST00000358835.3:c.5474C>A	p.Pro1825His	p.P1825H	ENST00000358835		1825	cCt/cAt	0	
FAM221A	340277		GRCh37	7	23737838	23737838	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_116																					ENST00000344962.4:c.665C>T	p.Ser222Phe	p.S222F	ENST00000344962	NM_199136.3	222	tCt/tTt	0	
DBF4	10926		GRCh37	7	87536876	87536876	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_116																					ENST00000265728.1:c.1423G>C	p.Glu475Gln	p.E475Q	ENST00000265728	NM_006716.3	475	Gaa/Caa	0	
ARHGAP21	57584		GRCh37	10	24910054	24910054	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_116																					ENST00000396432.2:c.770T>A	p.Val257Asp	p.V257D	ENST00000396432	NM_020824.3	257	gTt/gAt	0	
PRSS23	11098		GRCh37	11	86519143	86519143	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_116																					ENST00000280258.5:c.458C>T	p.Ser153Leu	p.S153L	ENST00000280258	NM_007173.4	153	tCa/tTa	0	
KIF21A	55605		GRCh37	12	39726764	39726764	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_116																					ENST00000361418.5:c.2633C>T	p.Ala878Val	p.A878V	ENST00000361418		878	gCc/gTc	0	
VPS13C	54832		GRCh37	15	62270893	62270893	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_116																					ENST00000261517.5:c.2222T>C	p.Ile741Thr	p.I741T	ENST00000261517	NM_020821.2	741	aTa/aCa	0	
FAM96A			GRCh37	15	64365198	64365198	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_116																					ENST00000300030.3:c.415G>A	p.Val139Met	p.V139M	ENST00000300030	NM_032231.4	139	Gtg/Atg	0	
STARD3	10948		GRCh37	17	37814773	37814773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_116																					ENST00000336308.5:c.545G>A	p.Arg182Gln	p.R182Q	ENST00000336308	NM_006804.3	182	cGa/cAa	0	
DSG1	1828		GRCh37	18	28934742	28934742	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_116																					ENST00000257192.4:c.2583C>A	p.Asn861Lys	p.N861K	ENST00000257192	NM_001942.2	861	aaC/aaA	0	
RIT2	6014		GRCh37	18	40554099	40554099	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_116																					ENST00000326695.5:c.174G>C	p.Lys58Asn	p.K58N	ENST00000326695	NM_002930.3	58	aaG/aaC	0	
COL4A6	1288		GRCh37	X	107414111	107414111	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_116																					ENST00000372216.4:c.3317G>A	p.Gly1106Asp	p.G1106D	ENST00000372216	NM_001847.2	1106	gGc/gAc	0	
G6PD	2539		GRCh37	X	153775012	153775012	+	intron_variant	Intron	SNP	C	C	T			brca_smc_2018_BB01_116																					ENST00000393564.2:c.-8-634G>A		p.*3*	ENST00000393564	NM_001042351.1			0	
LRP8	7804		GRCh37	1	53736826	53736826	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			brca_smc_2018_BR408																					ENST00000306052.6:c.1127-1G>A		p.X376_splice	ENST00000306052	NM_004631.4	376		0	
THBS3	7059		GRCh37	1	155170994	155170994	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR408																					ENST00000368378.3:c.1331G>T	p.Cys444Phe	p.C444F	ENST00000368378	NM_007112.4	444	tGt/tTt	0	
DNM3	26052		GRCh37	1	172007543	172007543	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR408																					ENST00000355305.5:c.934G>C	p.Glu312Gln	p.E312Q	ENST00000355305		312	Gaa/Caa	0	
EDEM3	80267		GRCh37	1	184723631	184723631	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR408																					ENST00000318130.8:c.150G>C	p.Gln50His	p.Q50H	ENST00000318130	NM_025191.3	50	caG/caC	0	
CFHR3	10878		GRCh37	1	196748936	196748936	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR408																					ENST00000367425.4:c.263A>G	p.Tyr88Cys	p.Y88C	ENST00000367425	NM_021023.5	88	tAt/tGt	0	
PLA2R1	22925		GRCh37	2	160801456	160801456	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR408																					ENST00000283243.7:c.4105T>C	p.Cys1369Arg	p.C1369R	ENST00000283243	NM_001195641.1	1369	Tgt/Cgt	0	
BARD1	580		GRCh37	2	215609832	215609832	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR408																					ENST00000260947.4:c.1862T>C	p.Met621Thr	p.M621T	ENST00000260947	NM_000465.2	621	aTg/aCg	0	
TNIK	23043		GRCh37	3	170828550	170828550	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR408																					ENST00000436636.2:c.2237C>A	p.Ser746Tyr	p.S746Y	ENST00000436636	NM_015028.2	746	tCc/tAc	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR408																					ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt	0	
OPA1	4976		GRCh37	3	193374947	193374947	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR408																					ENST00000392438.3:c.2092G>C	p.Asp698His	p.D698H	ENST00000392438	NM_015560.2	698	Gat/Cat	0	
KIAA0922			GRCh37	4	154512323	154512323	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR408																					ENST00000409663.3:c.1786G>T	p.Ala596Ser	p.A596S	ENST00000409663	NM_015196.3	596	Gca/Tca	0	
CSF1R	1436		GRCh37	5	149456893	149456893	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR408																					ENST00000286301.3:c.835G>A	p.Val279Met	p.V279M	ENST00000286301	NM_005211.3	279	Gtg/Atg	0	
GIMAP4	55303		GRCh37	7	150269380	150269380	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR408																					ENST00000255945.2:c.222C>A	p.Ser74Arg	p.S74R	ENST00000255945	NM_018326.2	74	agC/agA	0	
HAS2	3037		GRCh37	8	122626579	122626579	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR408																					ENST00000303924.4:c.1429G>A	p.Gly477Arg	p.G477R	ENST00000303924	NM_005328.2	477	Gga/Aga	0	
CYC1	1537		GRCh37	8	145151587	145151587	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR408																					ENST00000318911.4:c.712C>T	p.Pro238Ser	p.P238S	ENST00000318911	NM_001916.3	238	Cct/Tct	0	
TEK	7010		GRCh37	9	27157907	27157907	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR408																					ENST00000380036.4:c.131G>A	p.Cys44Tyr	p.C44Y	ENST00000380036	NM_000459.3	44	tGc/tAc	0	
ERCC6L2	375748		GRCh37	9	98774724	98774724	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR408																					ENST00000320486.5:c.807G>A	p.Asp270Asn	p.D270N	ENST00000320486		270	Gat/Aat	0	
C9orf37			GRCh37	9	140510381	140510381	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR408																					ENST00000371417.3:c.271G>A	p.Ala91Thr	p.A91T	ENST00000371417	NM_032937.4	91	Gcc/Acc	0	
CLPB	81570		GRCh37	11	72004547	72004547	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR408																					ENST00000294053.3:c.1988G>T	p.Ser663Ile	p.S663I	ENST00000294053	NM_001258394.1	663	aGc/aTc	0	
TM7SF3	51768		GRCh37	12	27129229	27129229	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR408																					ENST00000343028.4:c.1251C>G	p.Ile417Met	p.I417M	ENST00000343028	NM_016551.2	417	atC/atG	0	
ALG10B	144245		GRCh37	12	38714321	38714321	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR408																					ENST00000308742.4:c.728C>G	p.Ser243Cys	p.S243C	ENST00000308742	NM_001013620.3	243	tCc/tGc	0	
DUSP6	1848		GRCh37	12	89744385	89744385	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR408																					ENST00000279488.7:c.818C>T	p.Pro273Leu	p.P273L	ENST00000279488	NM_001946.2	273	cCt/cTt	0	
KIAA1033			GRCh37	12	105558049	105558049	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR408																					ENST00000332180.5:c.3318G>T	p.Met1106Ile	p.M1106I	ENST00000332180	NM_015275.1	1106	atG/atT	0	
NEK5	341676		GRCh37	13	52701587	52701587	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR408																					ENST00000355568.4:c.32G>T	p.Gly11Val	p.G11V	ENST00000355568	NM_199289.1	11	gGg/gTg	0	
TRAV17	28666		GRCh37	14	22466287	22466287	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR408																					ENST00000390445.2:c.217G>A	p.Glu73Lys	p.E73K	ENST00000390445		73	Gaa/Aaa	0	
HAGHL	84264		GRCh37	16	777521	777521	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR408																					ENST00000341413.4:c.12G>C	p.Lys4Asn	p.K4N	ENST00000341413		4	aaG/aaC	0	
TP53	7157		GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR408																					ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga	0	
SOCS7	30837		GRCh37	17	36523931	36523931	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR408																					ENST00000577233.1:c.1358G>A	p.Arg453Lys	p.R453K	ENST00000577233	NM_014598.2	453	aGa/aAa	0	
MED1	5469		GRCh37	17	37564399	37564399	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR408																					ENST00000300651.6:c.4075G>A	p.Asp1359Asn	p.D1359N	ENST00000300651	NM_004774.3	1359	Gat/Aat	0	
KRTAP9-4	85280		GRCh37	17	39406293	39406293	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR408																					ENST00000334109.2:c.321C>A	p.Tyr107Ter	p.Y107*	ENST00000334109	NM_033191.2	107	taC/taA	0	
BRSK1	84446		GRCh37	19	55812974	55812974	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR408																					ENST00000309383.1:c.773G>T	p.Cys258Phe	p.C258F	ENST00000309383	NM_032430.1	258	tGc/tTc	0	
EP300	2033		GRCh37	22	41527628	41527628	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR408																					ENST00000263253.7:c.1519A>G	p.Ser507Gly	p.S507G	ENST00000263253	NM_001429.3	507	Agc/Ggc	0	
TMEM164	84187		GRCh37	X	109416614	109416614	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR408																					ENST00000372068.2:c.829A>G	p.Met277Val	p.M277V	ENST00000372068	NM_032227.3	277	Atg/Gtg	0	
SLITRK4	139065		GRCh37	X	142718803	142718803	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR408																					ENST00000338017.4:c.122T>G	p.Val41Gly	p.V41G	ENST00000338017		41	gTc/gGc	0	
FATE1	89885		GRCh37	X	150891127	150891127	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR408																					ENST00000370350.3:c.448G>A	p.Ala150Thr	p.A150T	ENST00000370350	NM_033085.2	150	Gcc/Acc	0	
PABPC4	8761		GRCh37	1	40034530	40034530	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR313																					ENST00000372857.3:c.820G>A	p.Ala274Thr	p.A274T	ENST00000372857	NM_003819.3	274	Gca/Aca	0	
PABPC4	8761		GRCh37	1	40035663	40035663	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR313																					ENST00000372857.3:c.515G>T	p.Arg172Ile	p.R172I	ENST00000372857	NM_003819.3	172	aGa/aTa	0	
C8B	732		GRCh37	1	57420384	57420384	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR313																					ENST00000371237.4:c.508T>A	p.Trp170Arg	p.W170R	ENST00000371237	NM_000066.3	170	Tgg/Agg	0	
ADAM15	8751		GRCh37	1	155029513	155029513	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR313																					ENST00000356955.2:c.1084G>A	p.Gly362Arg	p.G362R	ENST00000356955	NM_207197.2	362	Ggg/Agg	0	
MARK1	4139		GRCh37	1	220835222	220835222	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR313																					ENST00000366917.4:c.2102G>A	p.Arg701Gln	p.R701Q	ENST00000366917	NM_001286124.1	701	cGg/cAg	0	
RBM34	23029		GRCh37	1	235299050	235299050	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR313																					ENST00000408888.3:c.925G>A	p.Asp309Asn	p.D309N	ENST00000408888		309	Gac/Aac	0	
RYR2	6262		GRCh37	1	237791209	237791209	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR313																					ENST00000366574.2:c.6269G>A	p.Arg2090Gln	p.R2090Q	ENST00000366574	NM_001035.2	2090	cGg/cAg	0	
TBC1D8	11138		GRCh37	2	101624628	101624628	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR313																					ENST00000376840.4:c.3078G>C	p.Gln1026His	p.Q1026H	ENST00000376840		1026	caG/caC	0	
KLHL24	54800		GRCh37	3	183368953	183368953	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR313																					ENST00000242810.6:c.809A>C	p.Glu270Ala	p.E270A	ENST00000242810		270	gAa/gCa	0	
ADAMTS16	170690		GRCh37	5	5146294	5146294	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR313																					ENST00000274181.7:c.227C>T	p.Ser76Phe	p.S76F	ENST00000274181	NM_139056.2	76	tCc/tTc	0	
PI16	221476		GRCh37	6	36930725	36930725	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR313																					ENST00000373674.3:c.607C>G	p.Pro203Ala	p.P203A	ENST00000373674	NM_153370.2	203	Ccg/Gcg	0	
SDR16C5	195814		GRCh37	8	57218282	57218282	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			brca_smc_2018_BR313																					ENST00000303749.3:c.711-1G>T		p.X237_splice	ENST00000303749	NM_138969.2	237		0	
SULF1	23213		GRCh37	8	70536314	70536314	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR313																					ENST00000260128.4:c.1732G>T	p.Asp578Tyr	p.D578Y	ENST00000260128	NM_015170.2	578	Gat/Tat	0	
FBXL6	26233		GRCh37	8	145580330	145580330	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR313																					ENST00000331890.5:c.923G>C	p.Gly308Ala	p.G308A	ENST00000331890	NM_012162.3	308	gGc/gCc	0	
PRUNE2	158471		GRCh37	9	79267441	79267441	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR313																					ENST00000376718.3:c.8515G>C	p.Asp2839His	p.D2839H	ENST00000376718	NM_015225.2	2839	Gat/Cat	0	
SORL1	6653		GRCh37	11	121367576	121367576	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			brca_smc_2018_BR313																					ENST00000260197.7:c.759-2A>T		p.X253_splice	ENST00000260197	NM_003105.5	253		0	
SPRYD3	84926		GRCh37	12	53462036	53462036	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR313																					ENST00000301463.4:c.746A>T	p.Gln249Leu	p.Q249L	ENST00000301463	NM_032840.2	249	cAg/cTg	0	
ANHX	647589		GRCh37	12	133808196	133808196	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR313																					ENST00000419717.1:c.284T>G	p.Val95Gly	p.V95G	ENST00000419717	NM_001191054.1	95	gTg/gGg	0	
INF2	64423		GRCh37	14	105181059	105181059	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR313																					ENST00000392634.4:c.3560C>T	p.Thr1187Ile	p.T1187I	ENST00000392634	NM_022489.3	1187	aCa/aTa	0	
GNPTG	84572		GRCh37	16	1412729	1412729	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR313																					ENST00000204679.4:c.727G>T	p.Glu243Ter	p.E243*	ENST00000204679	NM_032520.4	243	Gaa/Taa	0	
RANBP10	57610		GRCh37	16	67761341	67761341	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR313																					ENST00000317506.3:c.1621G>C	p.Asp541His	p.D541H	ENST00000317506	NM_020850.1	541	Gat/Cat	0	
USP6	9098		GRCh37	17	5042561	5042561	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR313																					ENST00000250066.6:c.1090C>G	p.Gln364Glu	p.Q364E	ENST00000250066	NM_004505.2	364	Caa/Gaa	0	
TP53	7157		GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR313																					ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg	0	
SRCIN1	80725		GRCh37	17	36718132	36718132	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR313																					ENST00000264659.7:c.1267G>C	p.Ala423Pro	p.A423P	ENST00000264659	NM_025248.2	423	Gcc/Ccc	0	
KATNAL2	83473		GRCh37	18	44595861	44595861	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR313																					ENST00000356157.7:c.898A>C	p.Lys300Gln	p.K300Q	ENST00000356157		300	Aag/Cag	0	
WIZ	58525		GRCh37	19	15535026	15535026	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR313																					ENST00000263381.7:c.2193G>C	p.Lys731Asn	p.K731N	ENST00000263381	NM_021241.2	731	aaG/aaC	0	
OCSTAMP	128506		GRCh37	20	45169999	45169999	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR313																					ENST00000279028.2:c.1615A>C	p.Ser539Arg	p.S539R	ENST00000279028	NM_080721.2	539	Agc/Cgc	0	
TSPEAR	54084		GRCh37	21	45948399	45948399	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR313																					ENST00000323084.4:c.858G>A	p.Trp286Ter	p.W286*	ENST00000323084	NM_001272037.1	286	tgG/tgA	0	
TLR7	51284		GRCh37	X	12906133	12906133	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR313																					ENST00000380659.3:c.2506G>C	p.Asp836His	p.D836H	ENST00000380659	NM_016562.3	836	Gat/Cat	0	
DCAF12L1	139170		GRCh37	X	125685917	125685917	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR313																					ENST00000371126.1:c.675C>A	p.Asp225Glu	p.D225E	ENST00000371126	NM_178470.4	225	gaC/gaA	0	
CD99L2	83692		GRCh37	X	149937508	149937508	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			brca_smc_2018_BR313																					ENST00000370377.3:c.788G>C	p.Ter263SerextTer41	p.*263Sext*41	ENST00000370377	NM_031462.3	263	tGa/tCa	0	
SMPDL3B	27293		GRCh37	1	28271874	28271874	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR442																					ENST00000373894.3:c.193G>A	p.Asp65Asn	p.D65N	ENST00000373894	NM_014474.2	65	Gat/Aat	0	
MCM6	4175		GRCh37	2	136616956	136616956	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR442																					ENST00000264156.2:c.1277C>G	p.Ala426Gly	p.A426G	ENST00000264156	NM_005915.5	426	gCt/gGt	0	
NRP2	8828		GRCh37	2	206659624	206659624	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR442																					ENST00000360409.3:c.2638G>C	p.Gly880Arg	p.G880R	ENST00000360409	NM_003872.2	880	Ggg/Cgg	0	
USP40	55230		GRCh37	2	234436070	234436070	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR442																					ENST00000251722.6:c.1705C>T	p.Arg569Trp	p.R569W	ENST00000251722		569	Cgg/Tgg	0	
USP38	84640		GRCh37	4	144135716	144135716	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR442																					ENST00000307017.4:c.2587A>T	p.Arg863Trp	p.R863W	ENST00000307017	NM_032557.5	863	Agg/Tgg	0	
NEK1	4750		GRCh37	4	170506504	170506504	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR442																					ENST00000439128.2:c.803C>A	p.Pro268His	p.P268H	ENST00000439128	NM_012224.2	268	cCt/cAt	0	
SLC4A9	83697		GRCh37	5	139740922	139740922	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR442																					ENST00000507527.1:c.547A>C	p.Asn183His	p.N183H	ENST00000507527		183	Aac/Cac	0	
TIMD4	91937		GRCh37	5	156381602	156381602	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR442																					ENST00000274532.2:c.224G>A	p.Arg75Lys	p.R75K	ENST00000274532	NM_138379.2	75	aGg/aAg	0	
DDX39B	7919		GRCh37	6	31503179	31503179	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR442																					ENST00000396172.1:c.700G>C	p.Glu234Gln	p.E234Q	ENST00000396172	NM_004640.6	234	Gag/Cag	0	
EPB41L2	2037		GRCh37	6	131190721	131190721	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR442																					ENST00000337057.3:c.2589A>T	p.Gln863His	p.Q863H	ENST00000337057	NM_001431.3	863	caA/caT	0	
CALN1	83698		GRCh37	7	71252856	71252856	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR442																					ENST00000329008.5:c.564C>A	p.Cys188Ter	p.C188*	ENST00000329008	NM_001017440.2	188	tgC/tgA	0	
TJP2	9414		GRCh37	9	71836060	71836060	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR442																					ENST00000377245.4:c.600C>G	p.Ser200Arg	p.S200R	ENST00000377245	NM_004817.3	200	agC/agG	0	
VWF	7450		GRCh37	12	6091035	6091035	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR442																					ENST00000261405.5:c.7204A>C	p.Thr2402Pro	p.T2402P	ENST00000261405	NM_000552.3	2402	Aca/Cca	0	
MAP3K12	7786		GRCh37	12	53878093	53878093	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR442																					ENST00000267079.2:c.1097T>C	p.Ile366Thr	p.I366T	ENST00000267079	NM_006301.3	366	aTt/aCt	0	
NAV3	89795		GRCh37	12	78400983	78400983	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR442																					ENST00000397909.2:c.1665G>T	p.Arg555Ser	p.R555S	ENST00000397909	NM_001024383.1	555	agG/agT	0	
ISCU	23479		GRCh37	12	108961009	108961009	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR442																					ENST00000311893.9:c.383A>G	p.Glu128Gly	p.E128G	ENST00000311893	NM_213595.2	128	gAg/gGg	0	
EAPP	55837		GRCh37	14	34994008	34994008	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR442																					ENST00000250454.3:c.476A>G	p.His159Arg	p.H159R	ENST00000250454	NM_018453.3	159	cAt/cGt	0	
MAP4K5	11183		GRCh37	14	50952826	50952826	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR442																					ENST00000013125.4:c.253C>T	p.Leu85Phe	p.L85F	ENST00000013125	NM_198794.2	85	Ctt/Ttt	0	
GALK2	2585		GRCh37	15	49611906	49611906	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR442																					ENST00000560031.1:c.1073A>T	p.Gln358Leu	p.Q358L	ENST00000560031		358	cAg/cTg	0	
ZFP90	146198		GRCh37	16	68597552	68597552	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR442																					ENST00000398253.2:c.862G>T	p.Gly288Ter	p.G288*	ENST00000398253	NM_133458.2	288	Gga/Tga	0	
NUDT7	283927		GRCh37	16	77775690	77775690	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR442																					ENST00000268533.5:c.560A>G	p.Gln187Arg	p.Q187R	ENST00000268533	NM_001105663.2	187	cAg/cGg	0	
MYCBPAP	84073		GRCh37	17	48595948	48595948	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR442																					ENST00000323776.5:c.644C>T	p.Ser215Phe	p.S215F	ENST00000323776	NM_032133.4	215	tCt/tTt	0	
C17orf80	55028		GRCh37	17	71243409	71243409	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR442																					ENST00000359042.2:c.1759A>T	p.Ser587Cys	p.S587C	ENST00000359042	NM_017941.4	587	Agc/Tgc	0	
APCDD1	147495		GRCh37	18	10471603	10471603	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR442																					ENST00000355285.5:c.319C>T	p.Gln107Ter	p.Q107*	ENST00000355285	NM_153000.4	107	Caa/Taa	0	
S1PR4	8698		GRCh37	19	3179433	3179433	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR442																					ENST00000246115.3:c.643G>A	p.Val215Ile	p.V215I	ENST00000246115	NM_003775.3	215	Gtc/Atc	0	
RHPN2	85415		GRCh37	19	33471025	33471025	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR442																					ENST00000254260.3:c.1938C>G	p.Asn646Lys	p.N646K	ENST00000254260	NM_033103.4	646	aaC/aaG	0	
LEUTX	342900		GRCh37	19	40275308	40275308	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR442																					ENST00000396841.4:c.59C>G	p.Ser20Cys	p.S20C	ENST00000396841	NM_001143832.1	20	tCc/tGc	0	
TMPRSS2	7113		GRCh37	21	42842601	42842601	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR442																					ENST00000332149.5:c.1145C>A	p.Ser382Tyr	p.S382Y	ENST00000332149	NM_005656.3	382	tCc/tAc	0	
IGLV1-50	28821		GRCh37	22	22681709	22681709	+	start_lost	Translation_Start_Site	SNP	A	A	G			brca_smc_2018_BR442																					ENST00000390291.2:c.1A>G	p.Met1?	p.M1?	ENST00000390291		1	Atg/Gtg	0	
TBC1D10A	83874		GRCh37	22	30689996	30689996	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR442																					ENST00000215790.7:c.809A>G	p.Tyr270Cys	p.Y270C	ENST00000215790	NM_031937.2	270	tAt/tGt	0	
MYH9	4627		GRCh37	22	36718555	36718555	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR442																					ENST00000216181.5:c.624G>T	p.Glu208Asp	p.E208D	ENST00000216181	NM_002473.4	208	gaG/gaT	0	
IFI44	10561		GRCh37	1	79126300	79126300	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR248																					ENST00000370747.4:c.1074C>G	p.Asp358Glu	p.D358E	ENST00000370747	NM_006417.4	358	gaC/gaG	0	
NES	10763		GRCh37	1	156641975	156641975	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR248																					ENST00000368223.3:c.2005G>T	p.Ala669Ser	p.A669S	ENST00000368223	NM_006617.1	669	Gct/Tct	0	
PTPRC	5788		GRCh37	1	198685899	198685899	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR248																					ENST00000442510.2:c.1380T>G	p.His460Gln	p.H460Q	ENST00000442510		460	caT/caG	0	
LIN9	286826		GRCh37	1	226420211	226420211	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR248																					ENST00000328205.5:c.1668C>A	p.Asn556Lys	p.N556K	ENST00000328205	NM_173083.3	556	aaC/aaA	0	
RNF187	149603		GRCh37	1	228680865	228680865	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR248																					ENST00000305943.7:c.268C>T	p.Leu90Phe	p.L90F	ENST00000305943	NM_001010858.2	90	Ctc/Ttc	0	
ANKRD23	200539		GRCh37	2	97507871	97507871	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR248																					ENST00000318357.4:c.226G>T	p.Glu76Ter	p.E76*	ENST00000318357	NM_144994.7	76	Gaa/Taa	0	
ZIC4	84107		GRCh37	3	147113965	147113965	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR248																					ENST00000383075.3:c.362G>C	p.Arg121Pro	p.R121P	ENST00000383075	NM_032153.5	121	cGc/cCc	0	
TRIP13	9319		GRCh37	5	908175	908175	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR248																					ENST00000166345.3:c.745G>A	p.Val249Met	p.V249M	ENST00000166345	NM_004237.3	249	Gtg/Atg	0	
TAP1	6890		GRCh37	6	32814910	32814910	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR248																					ENST00000354258.4:c.2155C>T	p.Arg719Trp	p.R719W	ENST00000354258	NM_000593.5	719	Cgg/Tgg	0	
CCDC146	57639		GRCh37	7	76909942	76909942	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR248																					ENST00000285871.4:c.1891G>T	p.Glu631Ter	p.E631*	ENST00000285871	NM_020879.2	631	Gaa/Taa	0	
ADAM22	53616		GRCh37	7	87772405	87772405	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR248																					ENST00000265727.7:c.1285G>A	p.Gly429Arg	p.G429R	ENST00000265727		429	Gga/Aga	0	
TMEM130	222865		GRCh37	7	98460905	98460905	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR248																					ENST00000416379.2:c.204C>A	p.His68Gln	p.H68Q	ENST00000416379		68	caC/caA	0	
LRIT1	26103		GRCh37	10	85992240	85992240	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR248																					ENST00000372105.3:c.1315G>A	p.Asp439Asn	p.D439N	ENST00000372105	NM_015613.2	439	Gac/Aac	0	
ZNF259			GRCh37	11	116656564	116656564	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR248																					ENST00000227322.3:c.530A>T	p.Glu177Val	p.E177V	ENST00000227322	NM_003904.3	177	gAg/gTg	0	
PPP4R4	57718		GRCh37	14	94640891	94640891	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR248																					ENST00000304338.3:c.89T>G	p.Ile30Ser	p.I30S	ENST00000304338	NM_058237.1	30	aTc/aGc	0	
PLA2G4D	283748		GRCh37	15	42371890	42371890	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR248																					ENST00000290472.3:c.1162G>A	p.Ala388Thr	p.A388T	ENST00000290472	NM_178034.3	388	Gcc/Acc	0	
NTRK3	4916		GRCh37	15	88678476	88678476	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR248																					ENST00000360948.2:c.1060C>G	p.Gln354Glu	p.Q354E	ENST00000360948	NM_001012338.2	354	Caa/Gaa	0	
KIAA0753	9851		GRCh37	17	6499630	6499630	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR248																					ENST00000361413.3:c.2206C>G	p.Arg736Gly	p.R736G	ENST00000361413	NM_014804.2	736	Cgt/Ggt	0	
SGCA	6442		GRCh37	17	48244750	48244750	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR248																					ENST00000262018.3:c.59A>G	p.Asp20Gly	p.D20G	ENST00000262018	NM_000023.2	20	gAc/gGc	0	
GH1	2688		GRCh37	17	61994793	61994793	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR248																					ENST00000323322.5:c.530A>C	p.His177Pro	p.H177P	ENST00000323322	NM_000515.3	177	cAc/cCc	0	
ENPP7	339221		GRCh37	17	77709109	77709109	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR248																					ENST00000328313.5:c.667G>C	p.Val223Leu	p.V223L	ENST00000328313	NM_178543.3	223	Gtg/Ctg	0	
C3	718		GRCh37	19	6711093	6711093	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR248																					ENST00000245907.6:c.1384C>T	p.Arg462Cys	p.R462C	ENST00000245907	NM_000064.2	462	Cgt/Tgt	0	
ZNF536	9745		GRCh37	19	30934627	30934627	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR248																					ENST00000355537.3:c.158G>A	p.Arg53Gln	p.R53Q	ENST00000355537	NM_014717.1	53	cGg/cAg	0	
DOPEY2			GRCh37	21	37618644	37618644	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR248																					ENST00000399151.3:c.4366G>C	p.Gly1456Arg	p.G1456R	ENST00000399151	NM_005128.2	1456	Ggt/Cgt	0	
PHF21B	112885		GRCh37	22	45404451	45404451	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR248																					ENST00000313237.5:c.95G>T	p.Arg32Leu	p.R32L	ENST00000313237	NM_138415.4	32	cGg/cTg	0	
NHS	4810		GRCh37	X	17744819	17744819	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR248																					ENST00000380060.3:c.2530G>A	p.Ala844Thr	p.A844T	ENST00000380060	NM_198270.2	844	Gca/Aca	0	
MAGEB5	347541		GRCh37	X	26235715	26235715	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR248																					ENST00000602297.1:c.297A>C	p.Glu99Asp	p.E99D	ENST00000602297	NM_001271752.1	99	gaA/gaC	0	
AMMECR1	9949		GRCh37	X	109445713	109445713	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR248																					ENST00000262844.5:c.751C>T	p.Arg251Cys	p.R251C	ENST00000262844	NM_015365.2	251	Cgc/Tgc	0	
FLNA	2316		GRCh37	X	153587916	153587916	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR248																					ENST00000369850.3:c.4078G>A	p.Val1360Ile	p.V1360I	ENST00000369850	NM_001110556.1	1360	Gtc/Atc	0	
TAS1R1	80835		GRCh37	1	6635091	6635091	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_090																					ENST00000333172.6:c.899C>T	p.Ser300Leu	p.S300L	ENST00000333172	NM_138697.3	300	tCa/tTa	0	
PLA2G2A	5320		GRCh37	1	20302291	20302291	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_090																					ENST00000375111.3:c.338C>G	p.Ala113Gly	p.A113G	ENST00000375111	NM_001161727.1	113	gCt/gGt	0	
CC2D1B	200014		GRCh37	1	52825519	52825519	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_090																					ENST00000371586.2:c.800T>C	p.Ile267Thr	p.I267T	ENST00000371586	NM_032449.2	267	aTt/aCt	0	
KIAA1107	23285		GRCh37	1	92649670	92649670	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_090																					ENST00000370378.4:c.3848A>T	p.Asp1283Val	p.D1283V	ENST00000370378	NM_015237.2	1283	gAc/gTc	0	
TCHH	7062		GRCh37	1	152083658	152083658	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_090																					ENST00000368804.1:c.2035G>C	p.Glu679Gln	p.E679Q	ENST00000368804	NM_007113.3	679	Gag/Cag	0	
PBXIP1	57326		GRCh37	1	154920464	154920464	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_090																					ENST00000368463.3:c.661G>C	p.Glu221Gln	p.E221Q	ENST00000368463	NM_020524.2	221	Gag/Cag	0	
MYOC	4653		GRCh37	1	171621501	171621501	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_090																					ENST00000037502.6:c.251A>C	p.Asp84Ala	p.D84A	ENST00000037502	NM_000261.1	84	gAc/gCc	0	
SOAT1	6646		GRCh37	1	179311274	179311274	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_090																					ENST00000367619.3:c.806C>G	p.Ser269Ter	p.S269*	ENST00000367619	NM_003101.5	269	tCa/tGa	0	
SWT1	54823		GRCh37	1	185183720	185183720	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_090																					ENST00000367500.4:c.2054C>G	p.Ser685Ter	p.S685*	ENST00000367500	NM_017673.6	685	tCa/tGa	0	
TPR	7175		GRCh37	1	186319379	186319379	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000367478.4:c.2752C>T	p.Gln918Ter	p.Q918*	ENST00000367478	NM_003292.2	918	Cag/Tag	0	
ARID4B	51742		GRCh37	1	235377307	235377307	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_090																					ENST00000264183.3:c.1618G>T	p.Glu540Ter	p.E540*	ENST00000264183	NM_016374.5	540	Gaa/Taa	0	
NID1	4811		GRCh37	1	236175333	236175333	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_090																					ENST00000264187.6:c.2415A>C	p.Glu805Asp	p.E805D	ENST00000264187	NM_002508.2	805	gaA/gaC	0	
GREM2	64388		GRCh37	1	240656584	240656584	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_090																					ENST00000318160.4:c.192G>T	p.Glu64Asp	p.E64D	ENST00000318160	NM_022469.3	64	gaG/gaT	0	
TTN	7273		GRCh37	2	179640239	179640239	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_090																					ENST00000591111.1:c.6352A>G	p.Ile2118Val	p.I2118V	ENST00000591111		2118	Att/Gtt	0	
ABCA12	26154		GRCh37	2	215813778	215813778	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_090																					ENST00000272895.7:c.6948C>G	p.Ile2316Met	p.I2316M	ENST00000272895	NM_173076.2	2316	atC/atG	0	
SPEG	10290		GRCh37	2	220348115	220348115	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_090																					ENST00000312358.7:c.5930G>T	p.Gly1977Val	p.G1977V	ENST00000312358	NM_005876.4	1977	gGa/gTa	0	
SLC35A5	55032		GRCh37	3	112299607	112299607	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_090																					ENST00000492406.1:c.643G>T	p.Ala215Ser	p.A215S	ENST00000492406	NM_017945.3	215	Gct/Tct	0	
PIK3CA	5290		GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_090																					ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt	0	
PIK3CA	5290		GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_090																					ENST00000263967.3:c.3132T>G	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaG	0	
HTR3E	285242		GRCh37	3	183823595	183823595	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_090																					ENST00000415389.2:c.763C>A	p.Leu255Ile	p.L255I	ENST00000415389	NM_001256613.1	255	Ctc/Atc	0	
MFSD7			GRCh37	4	678560	678560	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_090																					ENST00000404286.2:c.671C>G	p.Ser224Cys	p.S224C	ENST00000404286	NM_032219.2	224	tCt/tGt	0	
BST1	683		GRCh37	4	15704852	15704852	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000265016.4:c.85G>A	p.Gly29Arg	p.G29R	ENST00000265016	NM_004334.2	29	Ggg/Agg	0	
PPARGC1A	10891		GRCh37	4	23831124	23831124	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000264867.2:c.514C>T	p.His172Tyr	p.H172Y	ENST00000264867	NM_013261.3	172	Cac/Tac	0	
ATP8A1	10396		GRCh37	4	42592831	42592831	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_090																					ENST00000381668.5:c.521C>G	p.Ser174Ter	p.S174*	ENST00000381668	NM_006095.2	174	tCa/tGa	0	
GK2	2712		GRCh37	4	80328578	80328578	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_090																					ENST00000358842.3:c.777C>A	p.Asp259Glu	p.D259E	ENST00000358842	NM_033214.2	259	gaC/gaA	0	
KIAA1109	84162		GRCh37	4	123193512	123193512	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_090																					ENST00000264501.4:c.8398G>C	p.Glu2800Gln	p.E2800Q	ENST00000264501		2800	Gaa/Caa	0	
PLK4	10733		GRCh37	4	128807252	128807252	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_090																					ENST00000270861.5:c.727C>T	p.His243Tyr	p.H243Y	ENST00000270861	NM_014264.4	243	Cac/Tac	0	
AQPEP			GRCh37	5	115320387	115320387	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_090																					ENST00000357872.4:c.959G>C	p.Arg320Thr	p.R320T	ENST00000357872	NM_173800.4	320	aGa/aCa	0	
HSD17B4	3295		GRCh37	5	118877630	118877630	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000256216.6:c.2152G>A	p.Gly718Arg	p.G718R	ENST00000256216	NM_000414.3	718	Ggg/Agg	0	
PGBD1	84547		GRCh37	6	28265749	28265749	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000259883.3:c.850G>A	p.Ala284Thr	p.A284T	ENST00000259883		284	Gcc/Acc	0	
TNXB	7148		GRCh37	6	32036890	32036890	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_090																					ENST00000375244.3:c.5611G>C	p.Glu1871Gln	p.E1871Q	ENST00000375244		1871	Gag/Cag	0	
HLA-DQB2	3120		GRCh37	6	32729618	32729618	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_090																					ENST00000411527.1:c.183C>A	p.Asn61Lys	p.N61K	ENST00000411527	NM_001198858.1	61	aaC/aaA	0	
SBP1			GRCh37	6	33663380	33663380	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_090																					ENST00000594414.1:c.95A>G	p.Tyr32Cys	p.Y32C	ENST00000594414		32	tAt/tGt	0	
CAPN11	11131		GRCh37	6	44137192	44137192	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_090																					ENST00000398776.1:c.263A>T	p.Glu88Val	p.E88V	ENST00000398776	NM_007058.3	88	gAa/gTa	0	
COL19A1	1310		GRCh37	6	70866610	70866610	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000322773.4:c.2287G>A	p.Asp763Asn	p.D763N	ENST00000322773	NM_001858.4	763	Gat/Aat	0	
UTRN	7402		GRCh37	6	144724316	144724316	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_090																					ENST00000367545.3:c.137C>G	p.Ser46Ter	p.S46*	ENST00000367545	NM_007124.2	46	tCa/tGa	0	
EZR	7430		GRCh37	6	159206468	159206468	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_090																					ENST00000337147.7:c.340G>A	p.Glu114Lys	p.E114K	ENST00000337147	NM_003379.4	114	Gag/Aag	0	
KIAA1324L	222223		GRCh37	7	86688675	86688675	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000450689.2:c.155C>T	p.Ser52Phe	p.S52F	ENST00000450689	NM_001142749.2	52	tCc/tTc	0	
CYP3A4	1576		GRCh37	7	99364048	99364048	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000336411.2:c.817C>T	p.Gln273Ter	p.Q273*	ENST00000336411	NM_001202855.2	273	Cag/Tag	0	
BLK	640		GRCh37	8	11421486	11421486	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000259089.4:c.1387G>A	p.Glu463Lys	p.E463K	ENST00000259089	NM_001715.2	463	Gag/Aag	0	
UBR5	51366		GRCh37	8	103307488	103307488	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_090																					ENST00000520539.1:c.4002G>C	p.Gln1334His	p.Q1334H	ENST00000520539	NM_015902.5	1334	caG/caC	0	
ABRA	137735		GRCh37	8	107781772	107781772	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_090																					ENST00000311955.3:c.647T>A	p.Ile216Asn	p.I216N	ENST00000311955	NM_139166.4	216	aTc/aAc	0	
PTPRD	5789		GRCh37	9	8486271	8486271	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000356435.5:c.2546C>T	p.Thr849Ile	p.T849I	ENST00000356435		849	aCa/aTa	0	
FRMD3	257019		GRCh37	9	85950517	85950517	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_090																					ENST00000304195.3:c.510G>C	p.Glu170Asp	p.E170D	ENST00000304195	NM_001244960.1	170	gaG/gaC	0	
CRB2	286204		GRCh37	9	126135965	126135965	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_090																					ENST00000373631.3:c.3155T>G	p.Leu1052Arg	p.L1052R	ENST00000373631	NM_173689.5	1052	cTc/cGc	0	
FAM171A1	221061		GRCh37	10	15255230	15255230	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000378116.4:c.2357C>T	p.Thr786Met	p.T786M	ENST00000378116	NM_001010924.1	786	aCg/aTg	0	
GRID1	2894		GRCh37	10	87484348	87484348	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000327946.7:c.1619C>T	p.Ser540Leu	p.S540L	ENST00000327946	NM_017551.2	540	tCa/tTa	0	
MMS19	64210		GRCh37	10	99240783	99240783	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_090																					ENST00000370782.2:c.178C>G	p.Pro60Ala	p.P60A	ENST00000370782		60	Cca/Gca	0	
SHOC2	8036		GRCh37	10	112724583	112724583	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_090																					ENST00000369452.4:c.467A>G	p.Asn156Ser	p.N156S	ENST00000369452	NM_007373.3	156	aAt/aGt	0	
SCUBE2	57758		GRCh37	11	9068938	9068938	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_090																					ENST00000520467.1:c.1967G>C	p.Cys656Ser	p.C656S	ENST00000520467	NM_020974.2	656	tGt/tCt	0	
ABTB2	25841		GRCh37	11	34192566	34192566	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_090																					ENST00000435224.2:c.1450G>A	p.Glu484Lys	p.E484K	ENST00000435224	NM_145804.2	484	Gaa/Aaa	0	
PRB2	653247		GRCh37	12	11546624	11546624	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_090																					ENST00000389362.4:c.388C>G	p.Gln130Glu	p.Q130E	ENST00000389362	NM_006248.3	130	Caa/Gaa	0	
PPFIBP1	8496		GRCh37	12	27841249	27841249	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000318304.8:c.2407G>A	p.Glu803Lys	p.E803K	ENST00000318304	NM_177444.2	803	Gaa/Aaa	0	
NEDD1	121441		GRCh37	12	97339593	97339593	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_090																					ENST00000266742.4:c.1777C>T	p.Gln593Ter	p.Q593*	ENST00000266742	NM_152905.3	593	Cag/Tag	0	
DAO	1610		GRCh37	12	109288108	109288108	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_090																					ENST00000228476.3:c.577C>A	p.Pro193Thr	p.P193T	ENST00000228476	NM_001917.4	193	Ccc/Acc	0	
SETD8			GRCh37	12	123892171	123892171	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_090																					ENST00000402868.3:c.980C>T	p.Ala327Val	p.A327V	ENST00000402868		327	gCg/gTg	0	
BRCA2	675		GRCh37	13	32921003	32921003	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_090																					ENST00000380152.3:c.6977C>G	p.Ser2326Cys	p.S2326C	ENST00000380152		2326	tCt/tGt	0	
MYH6	4624		GRCh37	14	23863090	23863090	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_090																					ENST00000356287.3:c.2713G>T	p.Glu905Ter	p.E905*	ENST00000356287		905	Gag/Tag	0	
SLC38A6	145389		GRCh37	14	61497169	61497169	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_090																					ENST00000267488.4:c.410C>T	p.Ser137Leu	p.S137L	ENST00000267488	NM_153811.2	137	tCa/tTa	0	
TMED10	10972		GRCh37	14	75602497	75602497	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_090																					ENST00000303575.4:c.504G>A	p.Met168Ile	p.M168I	ENST00000303575	NM_006827.5	168	atG/atA	0	
SERPINA12	145264		GRCh37	14	94964609	94964609	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_090																					ENST00000341228.2:c.126G>C	p.Arg42Ser	p.R42S	ENST00000341228	NM_173850.2	42	agG/agC	0	
KIF23	9493		GRCh37	15	69714380	69714380	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_090																					ENST00000260363.4:c.366G>C	p.Met122Ile	p.M122I	ENST00000260363	NM_138555.3	122	atG/atC	0	
SLCO3A1	28232		GRCh37	15	92647736	92647736	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_090																					ENST00000318445.6:c.973C>A	p.Pro325Thr	p.P325T	ENST00000318445	NM_013272.3	325	Cca/Aca	0	
SSTR5	6755		GRCh37	16	1129730	1129730	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_090																					ENST00000293897.4:c.862T>A	p.Phe288Ile	p.F288I	ENST00000293897	NM_001053.3	288	Ttc/Atc	0	
KCTD13	253980		GRCh37	16	29937338	29937338	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000308768.5:c.17C>T	p.Ser6Leu	p.S6L	ENST00000308768		6	tCg/tTg	0	
ABCC11	85320		GRCh37	16	48218350	48218350	+	splice_donor_variant	Splice_Site	SNP	C	C	T			brca_smc_2018_BB01_090																					ENST00000356608.2:c.3258+1G>A		p.X1086_splice	ENST00000356608		1086		0	
ENKD1	84080		GRCh37	16	67700339	67700339	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_090																					ENST00000243878.4:c.7G>A	p.Glu3Lys	p.E3K	ENST00000243878	NM_032140.1	3	Gag/Aag	0	
TSNAXIP1	55815		GRCh37	16	67859572	67859572	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_090																					ENST00000388833.3:c.655A>T	p.Ile219Phe	p.I219F	ENST00000388833	NM_018430.2	219	Atc/Ttc	0	
ZNF469	84627		GRCh37	16	88498772	88498772	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_090																					ENST00000437464.1:c.4810G>C	p.Glu1604Gln	p.E1604Q	ENST00000437464	NM_001127464.1	1604	Gaa/Caa	0	
TP53	7157		GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_090																					ENST00000269305.4:c.332T>C	p.Leu111Pro	p.L111P	ENST00000269305	NM_001126112.2	111	cTg/cCg	0	
SLC47A1	55244		GRCh37	17	19474826	19474826	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_090																					ENST00000270570.4:c.1345C>T	p.Gln449Ter	p.Q449*	ENST00000270570	NM_018242.2	449	Caa/Taa	0	
UBBP4	23666		GRCh37	17	21730813	21730813	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000578713.1:c.115G>A	p.Asp39Asn	p.D39N	ENST00000578713		39	Gac/Aac	0	
NF1	4763		GRCh37	17	29676137	29676137	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000358273.4:c.7190-1G>A		p.X2397_splice	ENST00000358273	NM_001042492.2	2397		0	
ABCA8	10351		GRCh37	17	66878793	66878793	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_090																					ENST00000269080.2:c.3655C>G	p.Gln1219Glu	p.Q1219E	ENST00000269080	NM_007168.2	1219	Cag/Gag	0	
EPG5	57724		GRCh37	18	43492361	43492361	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000282041.5:c.3877C>T	p.Arg1293Cys	p.R1293C	ENST00000282041	NM_020964.2	1293	Cgc/Tgc	0	
CALR3	125972		GRCh37	19	16606648	16606648	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_090																					ENST00000269881.3:c.107G>T	p.Arg36Leu	p.R36L	ENST00000269881	NM_145046.4	36	cGa/cTa	0	
NCAN	1463		GRCh37	19	19349170	19349170	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_090																					ENST00000252575.6:c.3359C>G	p.Ser1120Cys	p.S1120C	ENST00000252575	NM_004386.2	1120	tCc/tGc	0	
CIC	23152		GRCh37	19	42791567	42791567	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_090																					ENST00000575354.2:c.548C>G	p.Ser183Ter	p.S183*	ENST00000575354	NM_015125.3	183	tCa/tGa	0	
ZNF223	7766		GRCh37	19	44570234	44570234	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_090																					ENST00000434772.3:c.253G>C	p.Glu85Gln	p.E85Q	ENST00000434772	NM_013361.4	85	Gag/Cag	0	
DHX34	9704		GRCh37	19	47883027	47883027	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_090																					ENST00000328771.4:c.2767G>T	p.Asp923Tyr	p.D923Y	ENST00000328771	NM_014681.5	923	Gat/Tat	0	
GLTSCR2			GRCh37	19	48259803	48259803	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_090																					ENST00000246802.5:c.1315C>T	p.Arg439Ter	p.R439*	ENST00000246802	NM_015710.4	439	Cga/Tga	0	
POLD1	5424		GRCh37	19	50905922	50905922	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_090																					ENST00000440232.2:c.894C>A	p.His298Gln	p.H298Q	ENST00000440232	NM_002691.3	298	caC/caA	0	
CD33	945		GRCh37	19	51729167	51729167	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_090																					ENST00000262262.4:c.527T>C	p.Ile176Thr	p.I176T	ENST00000262262	NM_001772.3	176	aTc/aCc	0	
CACNG6	59285		GRCh37	19	54496232	54496232	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_090																					ENST00000252729.2:c.101A>T	p.Glu34Val	p.E34V	ENST00000252729	NM_145814.1	34	gAg/gTg	0	
PDYN	5173		GRCh37	20	1961277	1961277	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_090																					ENST00000217305.2:c.457G>T	p.Asp153Tyr	p.D153Y	ENST00000217305	NM_024411.4	153	Gat/Tat	0	
KIAA1755	85449		GRCh37	20	36870170	36870170	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_090																					ENST00000279024.4:c.363C>G	p.Ile121Met	p.I121M	ENST00000279024	NM_001029864.1	121	atC/atG	0	
ZNFX1	57169		GRCh37	20	47864535	47864535	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_090																					ENST00000371752.1:c.5026C>A	p.Gln1676Lys	p.Q1676K	ENST00000371752		1676	Cag/Aag	0	
COL20A1	57642		GRCh37	20	61939380	61939380	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_090																					ENST00000358894.6:c.713C>T	p.Thr238Ile	p.T238I	ENST00000358894	NM_020882.2	238	aCc/aTc	0	
DOPEY2			GRCh37	21	37591730	37591730	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000399151.3:c.1190G>A	p.Arg397Lys	p.R397K	ENST00000399151	NM_005128.2	397	aGa/aAa	0	
DOPEY2			GRCh37	21	37603324	37603324	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000399151.3:c.2242G>A	p.Glu748Lys	p.E748K	ENST00000399151	NM_005128.2	748	Gag/Aag	0	
DOPEY2			GRCh37	21	37609580	37609580	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000399151.3:c.2643G>A	p.Trp881Ter	p.W881*	ENST00000399151	NM_005128.2	881	tgG/tgA	0	
COL6A1	1291		GRCh37	21	47417377	47417377	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000361866.3:c.1441G>A	p.Glu481Lys	p.E481K	ENST00000361866	NM_001848.2	481	Gag/Aag	0	
COL6A2	1292		GRCh37	21	47532084	47532084	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_090																					ENST00000300527.4:c.307G>A	p.Asp103Asn	p.D103N	ENST00000300527	NM_001849.3	103	Gac/Aac	0	
CECR2	27443		GRCh37	22	18028696	18028696	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_090																					ENST00000262608.8:c.3656A>G	p.Lys1219Arg	p.K1219R	ENST00000262608	NM_031413.3	1219	aAg/aGg	0	
RPGR	6103		GRCh37	X	38146445	38146445	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_090																					ENST00000339363.3:c.2422G>C	p.Glu808Gln	p.E808Q	ENST00000339363		808	Gag/Cag	0	
SUV39H1	6839		GRCh37	X	48565864	48565864	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_090																					ENST00000376687.3:c.1142C>A	p.Ser381Tyr	p.S381Y	ENST00000376687	NM_003173.2	381	tCc/tAc	0	
PCDH11X	27328		GRCh37	X	91133813	91133813	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_090																					ENST00000373094.1:c.2574C>A	p.Asn858Lys	p.N858K	ENST00000373094	NM_032968.3	858	aaC/aaA	0	
FUNDC2	65991		GRCh37	X	154274789	154274789	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_090																					ENST00000369498.3:c.290C>G	p.Thr97Arg	p.T97R	ENST00000369498	NM_023934.3	97	aCa/aGa	0	
PEF1	553115		GRCh37	1	32101066	32101066	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_074																					ENST00000373703.4:c.82G>A	p.Gly28Arg	p.G28R	ENST00000373703	NM_012392.3	28	Gga/Aga	0	
ZBTB8A	653121		GRCh37	1	33059301	33059301	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_074																					ENST00000373510.4:c.769C>A	p.Pro257Thr	p.P257T	ENST00000373510	NM_001040441.1	257	Cct/Act	0	
PRPF38A	84950		GRCh37	1	52880480	52880480	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_074																					ENST00000257181.9:c.796C>A	p.His266Asn	p.H266N	ENST00000257181	NM_032864.3	266	Cac/Aac	0	
CDCP2	200008		GRCh37	1	54610143	54610143	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_074																					ENST00000371330.1:c.423G>C	p.Gln141His	p.Q141H	ENST00000371330	NM_201546.3	141	caG/caC	0	
BCL9	607		GRCh37	1	147095912	147095912	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_074																					ENST00000234739.3:c.3433C>T	p.Gln1145Ter	p.Q1145*	ENST00000234739	NM_004326.3	1145	Cag/Tag	0	
SCYL3	57147		GRCh37	1	169825027	169825027	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_074																					ENST00000367770.1:c.1384A>T	p.Ile462Leu	p.I462L	ENST00000367770		462	Ata/Tta	0	
CNIH3	149111		GRCh37	1	224918267	224918267	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_074																					ENST00000272133.3:c.302A>G	p.His101Arg	p.H101R	ENST00000272133	NM_152495.1	101	cAc/cGc	0	
LYST	1130		GRCh37	1	235916553	235916553	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_074																					ENST00000389793.2:c.7251A>C	p.Arg2417Ser	p.R2417S	ENST00000389793	NM_000081.3	2417	agA/agC	0	
TMEM214	54867		GRCh37	2	27260493	27260493	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_074																					ENST00000238788.9:c.1075G>A	p.Asp359Asn	p.D359N	ENST00000238788	NM_017727.4	359	Gat/Aat	0	
CD207	50489		GRCh37	2	71060171	71060171	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_074																					ENST00000410009.3:c.577C>A	p.Gln193Lys	p.Q193K	ENST00000410009	NM_015717.3	193	Cag/Aag	0	
USP39	10713		GRCh37	2	85857980	85857980	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_074																					ENST00000323701.6:c.860C>G	p.Pro287Arg	p.P287R	ENST00000323701	NM_006590.3	287	cCt/cGt	0	
LRP1B	53353		GRCh37	2	141359140	141359140	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_074																					ENST00000389484.3:c.6868A>T	p.Thr2290Ser	p.T2290S	ENST00000389484	NM_018557.2	2290	Acc/Tcc	0	
ITGA4	3676		GRCh37	2	182363454	182363454	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_074																					ENST00000397033.2:c.1645C>A	p.Gln549Lys	p.Q549K	ENST00000397033	NM_000885.4	549	Cag/Aag	0	
GLT8D1	55830		GRCh37	3	52729043	52729043	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_074																					ENST00000266014.5:c.934G>C	p.Ala312Pro	p.A312P	ENST00000266014	NM_018446.3	312	Gct/Cct	0	
PRKCD	5580		GRCh37	3	53215513	53215513	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_074																					ENST00000330452.3:c.430C>T	p.Arg144Cys	p.R144C	ENST00000330452	NM_006254.3	144	Cgc/Tgc	0	
HTR1F	3355		GRCh37	3	88039952	88039952	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_074																					ENST00000319595.4:c.53A>T	p.Asn18Ile	p.N18I	ENST00000319595	NM_000866.3	18	aAc/aTc	0	
C3orf17			GRCh37	3	112727128	112727128	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_074																					ENST00000314400.5:c.1125G>C	p.Gln375His	p.Q375H	ENST00000314400	NM_015412.3	375	caG/caC	0	
IL2	3558		GRCh37	4	123372928	123372928	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_074																					ENST00000226730.4:c.441C>A	p.Ser147Arg	p.S147R	ENST00000226730	NM_000586.3	147	agC/agA	0	
NDFIP1	80762		GRCh37	5	141488576	141488576	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_074																					ENST00000253814.4:c.37C>T	p.Pro13Ser	p.P13S	ENST00000253814	NM_030571.3	13	Ccg/Tcg	0	
KIF4B	285643		GRCh37	5	154396036	154396036	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_074																					ENST00000435029.4:c.2617G>C	p.Glu873Gln	p.E873Q	ENST00000435029	NM_001099293.1	873	Gag/Cag	0	
SLC17A3	10786		GRCh37	6	25861926	25861926	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_074																					ENST00000360657.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000360657		106	gGg/gTg	0	
ABCF1	23		GRCh37	6	30557655	30557655	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_074																					ENST00000326195.8:c.2137C>T	p.Arg713Trp	p.R713W	ENST00000326195	NM_001025091.1	713	Cgg/Tgg	0	
PPARD	5467		GRCh37	6	35392416	35392416	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_074																					ENST00000311565.4:c.938C>T	p.Thr313Ile	p.T313I	ENST00000311565	NM_001171818.1	313	aCc/aTc	0	
MOCS1	4337		GRCh37	6	39880066	39880066	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_074																					ENST00000340692.5:c.923C>T	p.Ser308Phe	p.S308F	ENST00000340692		308	tCt/tTt	0	
CCND3	896		GRCh37	6	41904434	41904434	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BB01_074																					ENST00000372991.4:c.575-1G>C		p.X192_splice	ENST00000372991	NM_001760.3	192		0	
GABRR1	2569		GRCh37	6	89899959	89899959	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_074																					ENST00000454853.2:c.580G>T	p.Val194Leu	p.V194L	ENST00000454853	NM_001256704.1	194	Gta/Tta	0	
SHPRH	257218		GRCh37	6	146269484	146269484	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_074																					ENST00000275233.7:c.985A>G	p.Ser329Gly	p.S329G	ENST00000275233		329	Agt/Ggt	0	
TIAM2	26230		GRCh37	6	155500522	155500522	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_074																					ENST00000318981.5:c.2639A>G	p.Glu880Gly	p.E880G	ENST00000318981	NM_012454.3	880	gAa/gGa	0	
AVL9	23080		GRCh37	7	32609745	32609745	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_074																					ENST00000318709.4:c.1329C>G	p.His443Gln	p.H443Q	ENST00000318709	NM_015060.1	443	caC/caG	0	
AKR1B15	441282		GRCh37	7	134261161	134261161	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_074																					ENST00000457545.2:c.804G>T	p.Lys268Asn	p.K268N	ENST00000457545	NM_001080538.2	268	aaG/aaT	0	
TJP2	9414		GRCh37	9	71865998	71865998	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_074																					ENST00000377245.4:c.3039T>G	p.Tyr1013Ter	p.Y1013*	ENST00000377245	NM_004817.3	1013	taT/taG	0	
EPB41L4B	54566		GRCh37	9	111947778	111947778	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_074																					ENST00000374566.3:c.2409A>C	p.Lys803Asn	p.K803N	ENST00000374566	NM_019114.3	803	aaA/aaC	0	
SLC39A12	221074		GRCh37	10	18292155	18292155	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_074																					ENST00000377369.2:c.1815G>T	p.Met605Ile	p.M605I	ENST00000377369	NM_001145195.1	605	atG/atT	0	
CCDC7	79741		GRCh37	10	32856806	32856806	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_074																					ENST00000277657.6:c.1406A>T	p.Gln469Leu	p.Q469L	ENST00000277657	NM_001026383.1	469	cAa/cTa	0	
ANK3	288		GRCh37	10	61834272	61834272	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_074																					ENST00000280772.2:c.6367A>G	p.Ser2123Gly	p.S2123G	ENST00000280772	NM_020987.3	2123	Agt/Ggt	0	
ALDH18A1	5832		GRCh37	10	97366548	97366548	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_074																					ENST00000371224.2:c.2359C>T	p.Leu787Phe	p.L787F	ENST00000371224	NM_002860.3	787	Ctc/Ttc	0	
EDRF1	26098		GRCh37	10	127442411	127442411	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_074																					ENST00000356792.4:c.3542C>T	p.Thr1181Ile	p.T1181I	ENST00000356792	NM_001202438.1	1181	aCa/aTa	0	
TTC40			GRCh37	10	134648932	134648932	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_074																					ENST00000368586.5:c.6620G>A	p.Cys2207Tyr	p.C2207Y	ENST00000368586	NM_001200049.2	2207	tGc/tAc	0	
KNDC1	85442		GRCh37	10	135024152	135024152	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_074																					ENST00000304613.3:c.3832T>A	p.Tyr1278Asn	p.Y1278N	ENST00000304613		1278	Tac/Aac	0	
OR51G1	79324		GRCh37	11	4944842	4944842	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_074																					ENST00000321961.2:c.728G>T	p.Cys243Phe	p.C243F	ENST00000321961	NM_001005237.1	243	tGt/tTt	0	
TNKS1BP1	85456		GRCh37	11	57076479	57076479	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_074																					ENST00000358252.3:c.3706A>G	p.Lys1236Glu	p.K1236E	ENST00000358252	NM_033396.2	1236	Aaa/Gaa	0	
ATM	472		GRCh37	11	108198448	108198448	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_074																					ENST00000278616.4:c.7052A>G	p.Glu2351Gly	p.E2351G	ENST00000278616	NM_000051.3	2351	gAa/gGa	0	
OR10P1	121130		GRCh37	12	56031240	56031240	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_074																					ENST00000309675.2:c.565G>C	p.Ala189Pro	p.A189P	ENST00000309675	NM_206899.1	189	Gca/Cca	0	
PRKCH	5583		GRCh37	14	61789042	61789042	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_074																					ENST00000332981.5:c.223A>G	p.Asn75Asp	p.N75D	ENST00000332981	NM_006255.3	75	Aac/Gac	0	
GSC	145258		GRCh37	14	95236282	95236282	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_074																					ENST00000238558.3:c.71C>G	p.Pro24Arg	p.P24R	ENST00000238558	NM_173849.2	24	cCg/cGg	0	
DICER1	23405		GRCh37	14	95592946	95592946	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_074																					ENST00000343455.3:c.874G>C	p.Glu292Gln	p.E292Q	ENST00000343455	NM_177438.2	292	Gaa/Caa	0	
CCNK	8812		GRCh37	14	99959919	99959919	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_074																					ENST00000389879.5:c.266A>C	p.Gln89Pro	p.Q89P	ENST00000389879	NM_001099402.1	89	cAa/cCa	0	
CREBBP	1387		GRCh37	16	3781312	3781312	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_074																					ENST00000262367.5:c.5053A>T	p.Lys1685Ter	p.K1685*	ENST00000262367	NM_004380.2	1685	Aag/Tag	0	
GLIS2	84662		GRCh37	16	4384822	4384822	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_074																					ENST00000262366.3:c.366T>A	p.Tyr122Ter	p.Y122*	ENST00000262366		122	taT/taA	0	
KIAA0556	23247		GRCh37	16	27781196	27781196	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_074																					ENST00000261588.4:c.3990C>G	p.His1330Gln	p.H1330Q	ENST00000261588	NM_015202.2	1330	caC/caG	0	
BCAM	4059		GRCh37	19	45316574	45316574	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_074																					ENST00000270233.6:c.572G>A	p.Arg191His	p.R191H	ENST00000270233	NM_005581.4	191	cGc/cAc	0	
GLTSCR1			GRCh37	19	48183913	48183913	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_074																					ENST00000396720.3:c.1486C>T	p.Gln496Ter	p.Q496*	ENST00000396720	NM_015711.3	496	Cag/Tag	0	
LILRB5	10990		GRCh37	19	54760132	54760132	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_074																					ENST00000449561.2:c.429G>T	p.Gln143His	p.Q143H	ENST00000449561		143	caG/caT	0	
UBASH3A	53347		GRCh37	21	43838608	43838608	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_074																					ENST00000319294.6:c.936A>C	p.Glu312Asp	p.E312D	ENST00000319294	NM_018961.3	312	gaA/gaC	0	
COMT	1312		GRCh37	22	19951785	19951785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_074																					ENST00000361682.6:c.578G>A	p.Trp193Ter	p.W193*	ENST00000361682	NM_000754.3	193	tGg/tAg	0	
HDAC6	10013		GRCh37	X	48673118	48673118	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_074																					ENST00000334136.5:c.970C>A	p.Leu324Met	p.L324M	ENST00000334136		324	Ctg/Atg	0	
CT47B1	643311		GRCh37	X	120008974	120008974	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_074																					ENST00000371311.3:c.551G>T	p.Gly184Val	p.G184V	ENST00000371311	NM_001145718.1	184	gGc/gTc	0	
DNASE1L1	1774		GRCh37	X	153631871	153631871	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_074																					ENST00000014935.3:c.404C>A	p.Pro135His	p.P135H	ENST00000014935		135	cCc/cAc	0	
SAMD11	148398		GRCh37	1	878249	878249	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_080																					ENST00000342066.3:c.1375G>A	p.Asp459Asn	p.D459N	ENST00000342066	NM_152486.2	459	Gat/Aat	0	
TNFRSF4	7293		GRCh37	1	1148054	1148054	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_080																					ENST00000379236.3:c.401C>A	p.Ser134Tyr	p.S134Y	ENST00000379236	NM_003327.3	134	tCc/tAc	0	
PRDM16	63976		GRCh37	1	3322057	3322057	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			brca_smc_2018_BB01_080																					ENST00000270722.5:c.1033-2A>T		p.X345_splice	ENST00000270722		345		0	
SRSF4	6429		GRCh37	1	29475643	29475643	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_080																					ENST00000373795.4:c.764G>A	p.Ser255Asn	p.S255N	ENST00000373795	NM_005626.4	255	aGc/aAc	0	
PODN	127435		GRCh37	1	53535765	53535765	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_080																					ENST00000312553.5:c.382G>A	p.Val128Met	p.V128M	ENST00000312553	NM_001199081.1	128	Gtg/Atg	0	
CNTN2	6900		GRCh37	1	205039066	205039066	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_080																					ENST00000331830.4:c.2308T>C	p.Tyr770His	p.Y770H	ENST00000331830	NM_005076.3	770	Tac/Cac	0	
SLC35F5	80255		GRCh37	2	114500419	114500419	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_080																					ENST00000245680.2:c.600G>A	p.Met200Ile	p.M200I	ENST00000245680	NM_025181.2	200	atG/atA	0	
ASIC4	55515		GRCh37	2	220379330	220379330	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_080																					ENST00000347842.3:c.265G>T	p.Ala89Ser	p.A89S	ENST00000347842	NM_182847.2	89	Gcc/Tcc	0	
CHDH	55349		GRCh37	3	53857569	53857569	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_080																					ENST00000315251.6:c.467G>A	p.Arg156His	p.R156H	ENST00000315251	NM_018397.4	156	cGc/cAc	0	
ATR	545		GRCh37	3	142217484	142217484	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_080																					ENST00000350721.4:c.5513G>C	p.Ser1838Thr	p.S1838T	ENST00000350721	NM_001184.3	1838	aGc/aCc	0	
OCIAD1	54940		GRCh37	4	48862759	48862759	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_080																					ENST00000264312.7:c.718G>A	p.Gly240Arg	p.G240R	ENST00000264312	NM_017830.3	240	Gga/Aga	0	
UGT8	7368		GRCh37	4	115544053	115544053	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_080																					ENST00000310836.6:c.17C>T	p.Pro6Leu	p.P6L	ENST00000310836	NM_001128174.1	6	cCa/cTa	0	
TLL1	7092		GRCh37	4	166963211	166963211	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_080																					ENST00000061240.2:c.1294C>G	p.Leu432Val	p.L432V	ENST00000061240	NM_012464.4	432	Ctt/Gtt	0	
COL11A2	1302		GRCh37	6	33133371	33133371	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_080																					ENST00000374708.4:c.4447C>T	p.Arg1483Cys	p.R1483C	ENST00000374708	NM_080681.2	1483	Cgc/Tgc	0	
CCDC129			GRCh37	7	31683049	31683049	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_080																					ENST00000407970.3:c.2065C>A	p.Pro689Thr	p.P689T	ENST00000407970	NM_194300.3	689	Cct/Act	0	
SEPT14	346288		GRCh37	7	55912266	55912266	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_080																					ENST00000388975.3:c.321G>T	p.Leu107Phe	p.L107F	ENST00000388975	NM_207366.2	107	ttG/ttT	0	
AOC1	26		GRCh37	7	150554585	150554585	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_080																					ENST00000360937.4:c.1027G>A	p.Gly343Arg	p.G343R	ENST00000360937	NM_001091.3	343	Gga/Aga	0	
PTPRN2	5799		GRCh37	7	157414168	157414168	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_080																					ENST00000389418.4:c.2230C>T	p.Arg744Trp	p.R744W	ENST00000389418	NM_002847.3	744	Cgg/Tgg	0	
ASPH	444		GRCh37	8	62596733	62596733	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_080																					ENST00000379454.4:c.118G>A	p.Gly40Arg	p.G40R	ENST00000379454	NM_004318.3	40	Gga/Aga	0	
RBM12B	389677		GRCh37	8	94747980	94747980	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_080																					ENST00000399300.2:c.659C>A	p.Ser220Ter	p.S220*	ENST00000399300	NM_203390.2	220	tCa/tAa	0	
ZNF707	286075		GRCh37	8	144773364	144773364	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_080																					ENST00000358656.4:c.137C>A	p.Ala46Asp	p.A46D	ENST00000358656	NM_001100598.1	46	gCt/gAt	0	
MELK	9833		GRCh37	9	36651795	36651795	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_080																					ENST00000298048.2:c.974C>T	p.Ala325Val	p.A325V	ENST00000298048	NM_014791.3	325	gCt/gTt	0	
MUSK	4593		GRCh37	9	113562624	113562624	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_080																					ENST00000374448.4:c.1966G>A	p.Glu656Lys	p.E656K	ENST00000374448	NM_005592.3	656	Gaa/Aaa	0	
MUSK	4593		GRCh37	9	113563104	113563104	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_080																					ENST00000374448.4:c.2446C>T	p.Arg816Ter	p.R816*	ENST00000374448	NM_005592.3	816	Cga/Tga	0	
BTAF1	9044		GRCh37	10	93754393	93754393	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_080																					ENST00000265990.6:c.3301C>T	p.His1101Tyr	p.H1101Y	ENST00000265990	NM_003972.2	1101	Cat/Tat	0	
EHD1	10938		GRCh37	11	64627412	64627412	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_080																					ENST00000320631.3:c.899G>A	p.Arg300Gln	p.R300Q	ENST00000320631	NM_006795.2	300	cGg/cAg	0	
NDUFS8	4728		GRCh37	11	67803941	67803941	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_080																					ENST00000313468.5:c.514G>C	p.Glu172Gln	p.E172Q	ENST00000313468	NM_002496.3	172	Gag/Cag	0	
BLID	414899		GRCh37	11	121986369	121986369	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_080																					ENST00000560104.1:c.262A>T	p.Arg88Ter	p.R88*	ENST00000560104	NM_001001786.2	88	Aga/Tga	0	
GRIN2B	2904		GRCh37	12	13716664	13716664	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_080																					ENST00000609686.1:c.3508G>T	p.Gly1170Ter	p.G1170*	ENST00000609686	NM_000834.3	1170	Gga/Tga	0	
TMEM132B	114795		GRCh37	12	125834170	125834170	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_080																					ENST00000299308.3:c.225C>G	p.Ile75Met	p.I75M	ENST00000299308	NM_052907.2	75	atC/atG	0	
FARP1	10160		GRCh37	13	99087932	99087932	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_080																					ENST00000319562.6:c.2246G>T	p.Gly749Val	p.G749V	ENST00000319562	NM_005766.2	749	gGc/gTc	0	
DTD2	112487		GRCh37	14	31917370	31917370	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_080																					ENST00000310850.4:c.472A>G	p.Thr158Ala	p.T158A	ENST00000310850	NM_080664.2	158	Acc/Gcc	0	
AL139099.1			GRCh37	14	50065442	50065442	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_080																					ENST00000539688.1:c.139C>T	p.Pro47Ser	p.P47S	ENST00000539688		47	Ccc/Tcc	0	
ESR2	2100		GRCh37	14	64716324	64716324	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_080																					ENST00000341099.4:c.1165G>A	p.Glu389Lys	p.E389K	ENST00000341099	NM_001437.2	389	Gag/Aag	0	
UNC79	57578		GRCh37	14	94139722	94139722	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_080																					ENST00000393151.2:c.6779G>A	p.Arg2260His	p.R2260H	ENST00000393151		2260	cGt/cAt	0	
NIPA2	81614		GRCh37	15	23014517	23014517	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_080																					ENST00000337451.3:c.208G>T	p.Glu70Ter	p.E70*	ENST00000337451	NM_030922.6	70	Gag/Tag	0	
AP4E1	23431		GRCh37	15	51242027	51242027	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_080																					ENST00000261842.5:c.1321G>A	p.Ala441Thr	p.A441T	ENST00000261842	NM_001252127.1	441	Gct/Act	0	
TRIP4	9325		GRCh37	15	64698591	64698591	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_080																					ENST00000261884.3:c.760C>T	p.Arg254Ter	p.R254*	ENST00000261884	NM_016213.4	254	Cga/Tga	0	
UMOD	7369		GRCh37	16	20360379	20360379	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_080																					ENST00000302509.4:c.244A>G	p.Ser82Gly	p.S82G	ENST00000302509		82	Agc/Ggc	0	
ZP2	7783		GRCh37	16	21213314	21213314	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_080																					ENST00000574002.1:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000574002		440	Gaa/Aaa	0	
TP53	7157		GRCh37	17	7579515	7579515	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_080																					ENST00000269305.4:c.172C>A	p.Pro58Thr	p.P58T	ENST00000269305	NM_001126112.2	58	Cca/Aca	0	
WDR16			GRCh37	17	9501636	9501636	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_080																					ENST00000352665.5:c.622G>A	p.Val208Ile	p.V208I	ENST00000352665	NM_145054.4	208	Gtc/Atc	0	
TRIM16	10626		GRCh37	17	15534986	15534986	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_080																					ENST00000336708.7:c.1058G>A	p.Arg353His	p.R353H	ENST00000336708	NM_006470.3	353	cGc/cAc	0	
CD300E	342510		GRCh37	17	72613339	72613339	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_080																					ENST00000392619.1:c.387C>G	p.Tyr129Ter	p.Y129*	ENST00000392619	NM_181449.2	129	taC/taG	0	
MYOM1	8736		GRCh37	18	3119924	3119924	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_080																					ENST00000356443.4:c.3061G>A	p.Ala1021Thr	p.A1021T	ENST00000356443	NM_019856.1	1021	Gcg/Acg	0	
ZNF440	126070		GRCh37	19	11943311	11943311	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_080																					ENST00000304060.5:c.1320A>C	p.Gln440His	p.Q440H	ENST00000304060	NM_152357.2	440	caA/caC	0	
MRPL40	64976		GRCh37	22	19423350	19423350	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_080																					ENST00000333130.3:c.486C>G	p.Ile162Met	p.I162M	ENST00000333130	NM_003776.2	162	atC/atG	0	
STS	412		GRCh37	X	7175577	7175577	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_080																					ENST00000217961.4:c.345G>T	p.Glu115Asp	p.E115D	ENST00000217961	NM_000351.4	115	gaG/gaT	0	
OFD1	8481		GRCh37	X	13778424	13778424	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_080																					ENST00000340096.6:c.1845G>C	p.Trp615Cys	p.W615C	ENST00000340096	NM_003611.2	615	tgG/tgC	0	
FAM120C	54954		GRCh37	X	54099713	54099713	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_080																					ENST00000375180.2:c.3044C>T	p.Ser1015Leu	p.S1015L	ENST00000375180	NM_017848.4	1015	tCa/tTa	0	
IRS4	8471		GRCh37	X	107979142	107979142	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_080																					ENST00000372129.2:c.433C>T	p.Arg145Trp	p.R145W	ENST00000372129	NM_003604.2	145	Cgg/Tgg	0	
COL16A1	1307		GRCh37	1	32138051	32138051	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_124																					ENST00000373672.3:c.3071G>T	p.Gly1024Val	p.G1024V	ENST00000373672	NM_001856.3	1024	gGt/gTt	0	
ZBTB8B	728116		GRCh37	1	32950943	32950943	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_124																					ENST00000609129.1:c.1412A>G	p.Asn471Ser	p.N471S	ENST00000609129	NM_001145720.1	471	aAt/aGt	0	
HECTD3	79654		GRCh37	1	45469537	45469537	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_124																					ENST00000372172.4:c.2419G>A	p.Asp807Asn	p.D807N	ENST00000372172	NM_024602.5	807	Gac/Aac	0	
HMCN1	83872		GRCh37	1	186094924	186094924	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_124																					ENST00000271588.4:c.12688G>T	p.Val4230Leu	p.V4230L	ENST00000271588	NM_031935.2	4230	Gtg/Ttg	0	
CD207	50489		GRCh37	2	71060083	71060083	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_124																					ENST00000410009.3:c.665T>A	p.Phe222Tyr	p.F222Y	ENST00000410009	NM_015717.3	222	tTc/tAc	0	
DCTN1	1639		GRCh37	2	74605296	74605296	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_124																					ENST00000361874.3:c.110G>C	p.Gly37Ala	p.G37A	ENST00000361874	NM_004082.4	37	gGa/gCa	0	
ST6GAL2	84620		GRCh37	2	107459577	107459577	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_124																					ENST00000361686.4:c.857G>A	p.Ser286Asn	p.S286N	ENST00000361686	NM_032528.2	286	aGc/aAc	0	
RALB	5899		GRCh37	2	121036332	121036332	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_124																					ENST00000272519.5:c.92C>T	p.Thr31Met	p.T31M	ENST00000272519	NM_002881.2	31	aCg/aTg	0	
ZSWIM2	151112		GRCh37	2	187692887	187692887	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_124																					ENST00000295131.2:c.1726G>T	p.Asp576Tyr	p.D576Y	ENST00000295131	NM_182521.2	576	Gat/Tat	0	
HDAC4	9759		GRCh37	2	239974823	239974823	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_124																					ENST00000345617.3:c.3225G>T	p.Glu1075Asp	p.E1075D	ENST00000345617	NM_006037.3	1075	gaG/gaT	0	
MST1R	4486		GRCh37	3	49927393	49927393	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_124																					ENST00000296474.3:c.3911G>A	p.Arg1304Gln	p.R1304Q	ENST00000296474	NM_002447.2	1304	cGg/cAg	0	
OPA1	4976		GRCh37	3	193361187	193361187	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_124																					ENST00000392438.3:c.1166C>G	p.Pro389Arg	p.P389R	ENST00000392438	NM_015560.2	389	cCt/cGt	0	
APOD	347		GRCh37	3	195306250	195306250	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_124																					ENST00000343267.3:c.83G>T	p.Cys28Phe	p.C28F	ENST00000343267	NM_001647.3	28	tGc/tTc	0	
LRCH3	84859		GRCh37	3	197592320	197592320	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_124																					ENST00000425562.2:c.1743A>C	p.Leu581Phe	p.L581F	ENST00000425562		581	ttA/ttC	0	
CENPC	1060		GRCh37	4	68405622	68405622	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_124																					ENST00000273853.6:c.167C>G	p.Thr56Arg	p.T56R	ENST00000273853	NM_001812.2	56	aCa/aGa	0	
USP53	54532		GRCh37	4	120192707	120192707	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_124																					ENST00000274030.6:c.1692A>C	p.Gln564His	p.Q564H	ENST00000274030	NM_019050.2	564	caA/caC	0	
XRCC4	7518		GRCh37	5	82400757	82400757	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_124																					ENST00000338635.6:c.19A>G	p.Arg7Gly	p.R7G	ENST00000338635		7	Aga/Gga	0	
CDKAL1	54901		GRCh37	6	21065322	21065322	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_124																					ENST00000274695.4:c.1099C>G	p.Pro367Ala	p.P367A	ENST00000274695	NM_017774.3	367	Cct/Gct	0	
GUCA1B	2979		GRCh37	6	42156364	42156364	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_124																					ENST00000230361.3:c.313G>T	p.Gly105Cys	p.G105C	ENST00000230361	NM_002098.5	105	Ggc/Tgc	0	
PEX6	5190		GRCh37	6	42942666	42942666	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_124																					ENST00000304611.8:c.993C>A	p.Tyr331Ter	p.Y331*	ENST00000304611	NM_000287.3	331	taC/taA	0	
THSD7A	221981		GRCh37	7	11676524	11676524	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_124																					ENST00000423059.4:c.255G>A	p.Trp85Ter	p.W85*	ENST00000423059	NM_015204.2	85	tgG/tgA	0	
VWDE	221806		GRCh37	7	12376809	12376809	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_124																					ENST00000275358.3:c.4456C>A	p.Gln1486Lys	p.Q1486K	ENST00000275358	NM_001135924.1	1486	Caa/Aaa	0	
MCM7	4176		GRCh37	7	99690619	99690619	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_124																					ENST00000303887.5:c.2096A>C	p.Asp699Ala	p.D699A	ENST00000303887	NM_001278595.1	699	gAt/gCt	0	
TRPA1	8989		GRCh37	8	72945979	72945979	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_124																					ENST00000262209.4:c.2768T>A	p.Leu923Gln	p.L923Q	ENST00000262209	NM_007332.2	923	cTa/cAa	0	
SLC2A8	29988		GRCh37	9	130159692	130159692	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_124																					ENST00000373371.3:c.94G>C	p.Ala32Pro	p.A32P	ENST00000373371	NM_014580.4	32	Gcc/Ccc	0	
APBB1	322		GRCh37	11	6432421	6432421	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_124																					ENST00000609360.1:c.157G>A	p.Ala53Thr	p.A53T	ENST00000609360	NM_001164.3	53	Gcc/Acc	0	
KIAA1549L	25758		GRCh37	11	33640111	33640111	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_124																					ENST00000321505.4:c.4421G>A	p.Arg1474Gln	p.R1474Q	ENST00000321505		1474	cGg/cAg	0	
NAT10	55226		GRCh37	11	34161980	34161980	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_124																					ENST00000257829.3:c.2453T>G	p.Leu818Arg	p.L818R	ENST00000257829	NM_024662.2	818	cTc/cGc	0	
ACCSL	390110		GRCh37	11	44072148	44072148	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_124																					ENST00000378832.1:c.611A>G	p.Tyr204Cys	p.Y204C	ENST00000378832	NM_001031854.2	204	tAc/tGc	0	
NPAS4	266743		GRCh37	11	66192256	66192256	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_124																					ENST00000311034.2:c.1895T>C	p.Ile632Thr	p.I632T	ENST00000311034	NM_178864.3	632	aTa/aCa	0	
ANGPTL5	253935		GRCh37	11	101773388	101773388	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_124																					ENST00000334289.3:c.504C>G	p.Tyr168Ter	p.Y168*	ENST00000334289	NM_178127.4	168	taC/taG	0	
MPZL2	10205		GRCh37	11	118134847	118134847	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_124																					ENST00000278937.2:c.22C>T	p.Arg8Cys	p.R8C	ENST00000278937	NM_005797.3	8	Cgt/Tgt	0	
DZIP1	22873		GRCh37	13	96241447	96241447	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_124																					ENST00000347108.3:c.1988T>C	p.Val663Ala	p.V663A	ENST00000347108		663	gTc/gCc	0	
PABPN1	8106		GRCh37	14	23791475	23791475	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_124																					ENST00000216727.4:c.437A>T	p.Gln146Leu	p.Q146L	ENST00000216727	NM_004643.3	146	cAg/cTg	0	
ITGA11	22801		GRCh37	15	68661618	68661618	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_124																					ENST00000315757.7:c.169G>C	p.Val57Leu	p.V57L	ENST00000315757	NM_001004439.1	57	Gtc/Ctc	0	
TBC1D21	161514		GRCh37	15	74173760	74173760	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_124																					ENST00000300504.2:c.81T>G	p.Ile27Met	p.I27M	ENST00000300504	NM_153356.1	27	atT/atG	0	
TIGD7	91151		GRCh37	16	3349665	3349665	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_124																					ENST00000396862.1:c.950T>G	p.Met317Arg	p.M317R	ENST00000396862	NM_033208.3	317	aTg/aGg	0	
VWA3A	146177		GRCh37	16	22159503	22159503	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_124																					ENST00000389398.5:c.2860A>T	p.Thr954Ser	p.T954S	ENST00000389398	NM_173615.3	954	Acc/Tcc	0	
ZNF469	84627		GRCh37	16	88496904	88496904	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_124																					ENST00000437464.1:c.3026C>T	p.Ala1009Val	p.A1009V	ENST00000437464	NM_001127464.1	1009	gCg/gTg	0	
TP53	7157		GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_124																					ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg	0	
KRTAP3-2	83897		GRCh37	17	39155874	39155874	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_124																					ENST00000391587.1:c.232G>C	p.Glu78Gln	p.E78Q	ENST00000391587	NM_031959.2	78	Gag/Cag	0	
UNK	85451		GRCh37	17	73814732	73814732	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_124																					ENST00000589666.1:c.1381G>T	p.Gly461Cys	p.G461C	ENST00000589666	NM_001080419.2	461	Ggc/Tgc	0	
DSC1	1823		GRCh37	18	28737455	28737455	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_124																					ENST00000257198.5:c.230T>C	p.Ile77Thr	p.I77T	ENST00000257198	NM_024421.2	77	aTt/aCt	0	
EMR3			GRCh37	19	14761992	14761992	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_124																					ENST00000253673.5:c.602A>G	p.Asp201Gly	p.D201G	ENST00000253673	NM_032571.3	201	gAc/gGc	0	
JAK3	3718		GRCh37	19	17943681	17943681	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_124																					ENST00000458235.1:c.2408G>C	p.Trp803Ser	p.W803S	ENST00000458235	NM_000215.3	803	tGg/tCg	0	
KLC3	147700		GRCh37	19	45848933	45848933	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_124																					ENST00000391946.2:c.134C>G	p.Ala45Gly	p.A45G	ENST00000391946	NM_177417.2	45	gCt/gGt	0	
CTC-429C10.2			GRCh37	19	52403374	52403374	+	splice_acceptor_variant,non_coding_transcript_variant	Splice_Site	SNP	A	A	G			brca_smc_2018_BB01_124																					ENST00000600329.1:n.239-2A>G		p.X80_splice	ENST00000600329		80		0	
ZNF83	55769		GRCh37	19	53117243	53117243	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_124																					ENST00000301096.3:c.575T>C	p.Leu192Pro	p.L192P	ENST00000301096	NM_018300.3	192	cTt/cCt	0	
TPX2	22974		GRCh37	20	30381783	30381783	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_124																					ENST00000300403.6:c.1642C>T	p.Gln548Ter	p.Q548*	ENST00000300403	NM_012112.4	548	Cag/Tag	0	
TFF2	7032		GRCh37	21	43767611	43767611	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_124																					ENST00000291526.4:c.360C>G	p.Phe120Leu	p.F120L	ENST00000291526	NM_005423.4	120	ttC/ttG	0	
LA16c-60G3.6			GRCh37	22	16402176	16402176	+	splice_donor_variant,non_coding_transcript_variant	Splice_Site	SNP	G	G	T			brca_smc_2018_BB01_124																					ENST00000412729.1:n.528+1C>A		p.X176_splice	ENST00000412729		176		0	
PQBP1	10084		GRCh37	X	48759793	48759793	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_124																					ENST00000218224.4:c.576G>C	p.Lys192Asn	p.K192N	ENST00000218224	NM_005710.2	192	aaG/aaC	0	
F5	2153		GRCh37	1	169510798	169510798	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_130																					ENST00000367797.3:c.3530C>G	p.Ser1177Ter	p.S1177*	ENST00000367797	NM_000130.4	1177	tCa/tGa	0	
MYLK-AS1	100506826		GRCh37	3	123348340	123348340	+	splice_acceptor_variant,non_coding_transcript_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BB01_130																					ENST00000470449.1:n.247-1G>C		p.X83_splice	ENST00000470449		83		0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_130																					ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt	0	
PEPD	5184		GRCh37	19	33878300	33878300	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_130																					ENST00000244137.7:c.1432T>G	p.Cys478Gly	p.C478G	ENST00000244137	NM_000285.3	478	Tgc/Ggc	0	
PAFAH1B3	5050		GRCh37	19	42806452	42806452	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_130																					ENST00000262890.3:c.10G>C	p.Glu4Gln	p.E4Q	ENST00000262890	NM_002573.3	4	Gag/Cag	0	
NLRP2	55655		GRCh37	19	55493596	55493596	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_130																					ENST00000448584.2:c.530G>C	p.Gly177Ala	p.G177A	ENST00000448584	NM_001174083.1	177	gGa/gCa	0	
PHACTR3	116154		GRCh37	20	58420275	58420275	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_130																					ENST00000371015.1:c.1619A>G	p.Lys540Arg	p.K540R	ENST00000371015	NM_080672.4	540	aAa/aGa	0	
TIE1	7075		GRCh37	1	43770902	43770902	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			brca_smc_2018_BR331																					ENST00000372476.3:c.374-2A>C		p.X125_splice	ENST00000372476	NM_005424.4	125		0	
INADL			GRCh37	1	62237287	62237287	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR331																					ENST00000371158.2:c.709C>G	p.Leu237Val	p.L237V	ENST00000371158	NM_176877.2	237	Ctg/Gtg	0	
AGL	178		GRCh37	1	100340763	100340763	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR331																					ENST00000294724.4:c.1136A>T	p.Glu379Val	p.E379V	ENST00000294724	NM_000028.2	379	gAg/gTg	0	
SIKE1	80143		GRCh37	1	115322818	115322818	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR331																					ENST00000060969.5:c.178G>C	p.Asp60His	p.D60H	ENST00000060969		60	Gat/Cat	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR331																					ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt	0	
TNIP1	10318		GRCh37	5	150418713	150418713	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR331																					ENST00000315050.7:c.1208G>A	p.Ser403Asn	p.S403N	ENST00000315050	NM_001252391.1	403	aGc/aAc	0	
HIPK2	28996		GRCh37	7	139257807	139257807	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR331																					ENST00000406875.3:c.3463T>C	p.Ser1155Pro	p.S1155P	ENST00000406875	NM_022740.4	1155	Tcg/Ccg	0	
RAPGEF1	2889		GRCh37	9	134514053	134514053	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR331																					ENST00000372189.3:c.569G>C	p.Gly190Ala	p.G190A	ENST00000372189	NM_005312.2	190	gGg/gCg	0	
TAF3	83860		GRCh37	10	7866349	7866349	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR331																					ENST00000344293.5:c.235G>A	p.Glu79Lys	p.E79K	ENST00000344293	NM_031923.3	79	Gaa/Aaa	0	
SPTBN2	6712		GRCh37	11	66468043	66468043	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR331																					ENST00000309996.2:c.3527G>A	p.Gly1176Glu	p.G1176E	ENST00000309996	NM_006946.2	1176	gGa/gAa	0	
TP53	7157		GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR331																					ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg	0	
SSH2	85464		GRCh37	17	28120934	28120934	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR331																					ENST00000269033.3:c.85G>C	p.Glu29Gln	p.E29Q	ENST00000269033	NM_033389.2	29	Gaa/Caa	0	
NUP85	79902		GRCh37	17	73227722	73227722	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR331																					ENST00000245544.4:c.1233T>G	p.Phe411Leu	p.F411L	ENST00000245544	NM_024844.3	411	ttT/ttG	0	
ZNF580	51157		GRCh37	19	56154082	56154082	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR331																					ENST00000325333.5:c.208G>A	p.Glu70Lys	p.E70K	ENST00000325333	NM_207115.1	70	Gag/Aag	0	
CAPZA1	829		GRCh37	1	113212671	113212671	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_059																					ENST00000263168.3:c.778C>T	p.Arg260Trp	p.R260W	ENST00000263168	NM_006135.2	260	Cgg/Tgg	0	
TARS2	80222		GRCh37	1	150469097	150469097	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_059																					ENST00000369064.3:c.914T>G	p.Ile305Ser	p.I305S	ENST00000369064	NM_025150.4	305	aTt/aGt	0	
ILDR2	387597		GRCh37	1	166905975	166905975	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			brca_smc_2018_BB01_059																					ENST00000271417.3:c.557-1G>T		p.X186_splice	ENST00000271417	NM_199351.2	186		0	
LGALS8	3964		GRCh37	1	236708206	236708206	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_059																					ENST00000341872.6:c.795G>A	p.Met265Ile	p.M265I	ENST00000341872	NM_201543.2	265	atG/atA	0	
ASXL2	55252		GRCh37	2	25965672	25965672	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_059																					ENST00000435504.4:c.3534A>T	p.Glu1178Asp	p.E1178D	ENST00000435504		1178	gaA/gaT	0	
BUB1	699		GRCh37	2	111419286	111419286	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_059																					ENST00000302759.6:c.1090C>T	p.Pro364Ser	p.P364S	ENST00000302759	NM_004336.4	364	Cct/Tct	0	
TTN	7273		GRCh37	2	179596423	179596423	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_059																					ENST00000591111.1:c.16228A>G	p.Arg5410Gly	p.R5410G	ENST00000591111		5410	Aga/Gga	0	
DIRC2			GRCh37	3	122514220	122514220	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_059																					ENST00000261038.5:c.181C>A	p.Leu61Met	p.L61M	ENST00000261038	NM_032839.2	61	Ctg/Atg	0	
MDN1	23195		GRCh37	6	90433319	90433319	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_059																					ENST00000369393.3:c.5690C>G	p.Thr1897Arg	p.T1897R	ENST00000369393		1897	aCa/aGa	0	
MAP3K5	4217		GRCh37	6	136935302	136935302	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_059																					ENST00000359015.4:c.2273C>G	p.Pro758Arg	p.P758R	ENST00000359015	NM_005923.3	758	cCt/cGt	0	
UTRN	7402		GRCh37	6	144803366	144803366	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_059																					ENST00000367545.3:c.3529C>T	p.Gln1177Ter	p.Q1177*	ENST00000367545	NM_007124.2	1177	Cag/Tag	0	
CHST12	55501		GRCh37	7	2473297	2473297	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_059																					ENST00000258711.6:c.1023G>T	p.Lys341Asn	p.K341N	ENST00000258711	NM_001243794.1	341	aaG/aaT	0	
TTC39B	158219		GRCh37	9	15185300	15185300	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_059																					ENST00000512701.2:c.1592T>A	p.Val531Glu	p.V531E	ENST00000512701		531	gTg/gAg	0	
ARHGAP21	57584		GRCh37	10	24908813	24908813	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_059																					ENST00000396432.2:c.2011A>G	p.Ser671Gly	p.S671G	ENST00000396432	NM_020824.3	671	Agt/Ggt	0	
FRMPD2	143162		GRCh37	10	49440287	49440287	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_059																					ENST00000374201.3:c.1039G>C	p.Val347Leu	p.V347L	ENST00000374201	NM_001018071.3	347	Gtc/Ctc	0	
SORBS1	10580		GRCh37	10	97096891	97096891	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_059																					ENST00000361941.3:c.3026C>G	p.Pro1009Arg	p.P1009R	ENST00000361941	NM_001034954.1	1009	cCt/cGt	0	
CD6	923		GRCh37	11	60775215	60775215	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_059																					ENST00000313421.7:c.302C>A	p.Thr101Asn	p.T101N	ENST00000313421	NM_006725.4	101	aCc/aAc	0	
ITPR2	3709		GRCh37	12	26848568	26848568	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_059																					ENST00000381340.3:c.967C>T	p.Arg323Ter	p.R323*	ENST00000381340	NM_002223.2	323	Cga/Tga	0	
SVOP	55530		GRCh37	12	109327985	109327985	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_059																					ENST00000299134.5:c.838G>C	p.Gly280Ala	p.G280A	ENST00000299134	NM_018711.2	280	gGa/gCa	0	
PSMD9	5715		GRCh37	12	122326800	122326800	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_059																					ENST00000541212.1:c.38C>A	p.Ser13Ter	p.S13*	ENST00000541212		13	tCg/tAg	0	
DHX37	57647		GRCh37	12	125460022	125460022	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_059																					ENST00000308736.2:c.923G>T	p.Arg308Leu	p.R308L	ENST00000308736	NM_032656.3	308	cGa/cTa	0	
GSG1L	146395		GRCh37	16	28074608	28074608	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_059																					ENST00000447459.2:c.138G>C	p.Gln46His	p.Q46H	ENST00000447459	NM_001109763.1	46	caG/caC	0	
CNGB1	1258		GRCh37	16	57957256	57957256	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_059																					ENST00000251102.8:c.1564G>A	p.Ala522Thr	p.A522T	ENST00000251102	NM_001297.4	522	Gct/Act	0	
TP53	7157		GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_059																					ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg	0	
ANKRD29	147463		GRCh37	18	21209891	21209891	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_059																					ENST00000592179.1:c.454G>T	p.Ala152Ser	p.A152S	ENST00000592179	NM_173505.2	152	Gct/Tct	0	
TMX3	54495		GRCh37	18	66367684	66367684	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_059																					ENST00000299608.2:c.350G>T	p.Arg117Leu	p.R117L	ENST00000299608	NM_019022.3	117	cGa/cTa	0	
NAPSA	9476		GRCh37	19	50868857	50868857	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_059																					ENST00000253719.2:c.22C>T	p.Gln8Ter	p.Q8*	ENST00000253719	NM_004851.1	8	Caa/Taa	0	
NLRP13	126204		GRCh37	19	56423894	56423894	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_059																					ENST00000342929.3:c.1289C>A	p.Thr430Asn	p.T430N	ENST00000342929	NM_176810.2	430	aCc/aAc	0	
CSRP2BP			GRCh37	20	18167959	18167959	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_059																					ENST00000435364.3:c.2205C>G	p.His735Gln	p.H735Q	ENST00000435364	NM_020536.4	735	caC/caG	0	
CST9	128822		GRCh37	20	23586397	23586397	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_059																					ENST00000376971.3:c.105G>T	p.Met35Ile	p.M35I	ENST00000376971	NM_001008693.2	35	atG/atT	0	
FCGR1B	2210		GRCh37	1	120930038	120930038	+	splice_donor_variant	Splice_Site	SNP	C	C	A			brca_smc_2018_BB01_019																					ENST00000369384.4:c.562+1G>T		p.X188_splice	ENST00000369384	NM_001017986.3	188		0	
SCN2A	6326		GRCh37	2	166170469	166170469	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_019																					ENST00000283256.6:c.1234G>A	p.Gly412Ser	p.G412S	ENST00000283256	NM_021007.2	412	Ggc/Agc	0	
NBEAL1	65065		GRCh37	2	203922067	203922067	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_019																					ENST00000449802.1:c.406G>C	p.Glu136Gln	p.E136Q	ENST00000449802	NM_001114132.1	136	Gag/Cag	0	
NBEAL1	65065		GRCh37	2	203991559	203991559	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_019																					ENST00000449802.1:c.3071A>G	p.Tyr1024Cys	p.Y1024C	ENST00000449802	NM_001114132.1	1024	tAt/tGt	0	
NDUFS1	4719		GRCh37	2	206994941	206994941	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_019																					ENST00000233190.6:c.1579G>A	p.Asp527Asn	p.D527N	ENST00000233190	NM_005006.6	527	Gac/Aac	0	
NMUR1	10316		GRCh37	2	232389769	232389769	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_019																					ENST00000305141.4:c.1266G>C	p.Glu422Asp	p.E422D	ENST00000305141	NM_006056.4	422	gaG/gaC	0	
FAT2	2196		GRCh37	5	150897194	150897194	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_019																					ENST00000261800.5:c.11450C>T	p.Ser3817Phe	p.S3817F	ENST00000261800	NM_001447.2	3817	tCc/tTc	0	
JARID2	3720		GRCh37	6	15512471	15512471	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_019																					ENST00000341776.2:c.2985C>G	p.Ile995Met	p.I995M	ENST00000341776	NM_004973.3	995	atC/atG	0	
BAI1			GRCh37	8	143599550	143599550	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_019																					ENST00000323289.5:c.2869G>A	p.Val957Met	p.V957M	ENST00000323289	NM_001702.2	957	Gtg/Atg	0	
TRBV20OR9-2	6962		GRCh37	9	33618346	33618346	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_019																					ENST00000379435.3:c.232A>G	p.Met78Val	p.M78V	ENST00000379435		78	Atg/Gtg	0	
CCDC180	100499483		GRCh37	9	100117178	100117178	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_019																					ENST00000375202.2:c.3284A>T	p.Asn1095Ile	p.N1095I	ENST00000375202		1095	aAt/aTt	0	
RALGDS	5900		GRCh37	9	135982062	135982062	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_019																					ENST00000372050.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000372050	NM_006266.3	496	cGt/cAt	0	
OR52J3	119679		GRCh37	11	5068617	5068617	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_019																					ENST00000380370.1:c.862C>T	p.Leu288Phe	p.L288F	ENST00000380370	NM_001001916.2	288	Ctc/Ttc	0	
SSPN	8082		GRCh37	12	26383875	26383875	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_019																					ENST00000242729.2:c.598A>T	p.Ile200Phe	p.I200F	ENST00000242729	NM_005086.4	200	Att/Ttt	0	
SSH1	54434		GRCh37	12	109251220	109251220	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_019																					ENST00000326495.5:c.53C>T	p.Ser18Leu	p.S18L	ENST00000326495	NM_018984.3	18	tCg/tTg	0	
CIRH1A			GRCh37	16	69170609	69170609	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_019																					ENST00000314423.7:c.170G>A	p.Gly57Asp	p.G57D	ENST00000314423		57	gGt/gAt	0	
CDT1	81620		GRCh37	16	88873688	88873688	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BB01_019																					ENST00000301019.4:c.1276-1G>A		p.X426_splice	ENST00000301019	NM_030928.3	426		0	
MYO15A	51168		GRCh37	17	18024818	18024818	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_019																					ENST00000205890.5:c.2704G>A	p.Ala902Thr	p.A902T	ENST00000205890	NM_016239.3	902	Gcg/Acg	0	
BCOR	54880		GRCh37	X	39921642	39921642	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_019																					ENST00000378444.4:c.4178C>G	p.Thr1393Ser	p.T1393S	ENST00000378444	NM_001123385.1	1393	aCt/aGt	0	
WDTC1	23038		GRCh37	1	27618758	27618758	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_094																					ENST00000319394.3:c.532A>G	p.Thr178Ala	p.T178A	ENST00000319394	NM_015023.4	178	Aca/Gca	0	
PHC2	1912		GRCh37	1	33790594	33790594	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_094																					ENST00000257118.5:c.2449C>T	p.Arg817Cys	p.R817C	ENST00000257118	NM_198040.2	817	Cgt/Tgt	0	
SLC1A7	6512		GRCh37	1	53553837	53553837	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_094																					ENST00000371494.4:c.1527T>G	p.Asn509Lys	p.N509K	ENST00000371494	NM_006671.4	509	aaT/aaG	0	
EPS8L3	79574		GRCh37	1	110299654	110299654	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_094																					ENST00000361965.4:c.1103C>A	p.Ala368Asp	p.A368D	ENST00000361965		368	gCc/gAc	0	
SELP	6403		GRCh37	1	169572392	169572392	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_094																					ENST00000263686.6:c.1577C>G	p.Pro526Arg	p.P526R	ENST00000263686	NM_003005.3	526	cCt/cGt	0	
CAMSAP2	23271		GRCh37	1	200819189	200819189	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_094																					ENST00000236925.4:c.3325C>G	p.Pro1109Ala	p.P1109A	ENST00000236925		1109	Cct/Gct	0	
HHAT	55733		GRCh37	1	210761255	210761255	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_094																					ENST00000261458.3:c.1057C>G	p.Pro353Ala	p.P353A	ENST00000261458	NM_018194.4	353	Cca/Gca	0	
CCDC88A	55704		GRCh37	2	55536032	55536032	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_094																					ENST00000436346.1:c.4300C>G	p.Leu1434Val	p.L1434V	ENST00000436346	NM_001135597.1	1434	Ctc/Gtc	0	
LRRTM4	80059		GRCh37	2	76975856	76975856	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_094																					ENST00000409093.1:c.1738G>T	p.Ala580Ser	p.A580S	ENST00000409093		580	Gca/Tca	0	
FN1	2335		GRCh37	2	216261863	216261863	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_094																					ENST00000359671.1:c.3601C>G	p.Pro1201Ala	p.P1201A	ENST00000359671		1201	Cca/Gca	0	
CCDC108			GRCh37	2	219870201	219870201	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_094																					ENST00000341552.5:c.5006A>C	p.Lys1669Thr	p.K1669T	ENST00000341552	NM_194302.3	1669	aAg/aCg	0	
SLC19A3	80704		GRCh37	2	228560738	228560738	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_094																					ENST00000258403.3:c.1039C>G	p.Leu347Val	p.L347V	ENST00000258403	NM_025243.3	347	Ctg/Gtg	0	
NBEAL2	23218		GRCh37	3	47044723	47044723	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_094																					ENST00000450053.3:c.5644G>C	p.Ala1882Pro	p.A1882P	ENST00000450053	NM_015175.2	1882	Gcc/Ccc	0	
PTPRG	5793		GRCh37	3	62189320	62189320	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_094																					ENST00000474889.1:c.1851G>T	p.Glu617Asp	p.E617D	ENST00000474889	NM_002841.3	617	gaG/gaT	0	
PTPRG	5793		GRCh37	3	62189321	62189321	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_094																					ENST00000474889.1:c.1852C>G	p.Arg618Gly	p.R618G	ENST00000474889	NM_002841.3	618	Cgg/Ggg	0	
H1FOO	132243		GRCh37	3	129266443	129266443	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_094																					ENST00000324382.2:c.298G>C	p.Ala100Pro	p.A100P	ENST00000324382	NM_153833.1	100	Gcg/Ccg	0	
TSC22D2	9819		GRCh37	3	150129068	150129068	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_094																					ENST00000361875.3:c.1931C>G	p.Ala644Gly	p.A644G	ENST00000361875	NM_014779.2	644	gCt/gGt	0	
ZNF131	7690		GRCh37	5	43161656	43161656	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_094																					ENST00000509156.1:c.677G>C	p.Arg226Thr	p.R226T	ENST00000509156		226	aGa/aCa	0	
EMB	133418		GRCh37	5	49723984	49723984	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_094																					ENST00000303221.5:c.190C>G	p.Leu64Val	p.L64V	ENST00000303221	NM_198449.2	64	Ctg/Gtg	0	
CSF1R	1436		GRCh37	5	149441133	149441133	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_094																					ENST00000286301.3:c.1779T>G	p.Phe593Leu	p.F593L	ENST00000286301	NM_005211.3	593	ttT/ttG	0	
PKHD1	5314		GRCh37	6	51890726	51890726	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_094																					ENST00000371117.3:c.3882G>C	p.Met1294Ile	p.M1294I	ENST00000371117	NM_138694.3	1294	atG/atC	0	
EYS	346007		GRCh37	6	65523451	65523451	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_094																					ENST00000370616.2:c.3263G>T	p.Cys1088Phe	p.C1088F	ENST00000370616		1088	tGt/tTt	0	
COL12A1	1303		GRCh37	6	75862139	75862139	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_094																					ENST00000322507.8:c.3625A>C	p.Ser1209Arg	p.S1209R	ENST00000322507	NM_004370.5	1209	Agc/Cgc	0	
COL12A1	1303		GRCh37	6	75862140	75862140	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_094																					ENST00000322507.8:c.3624G>T	p.Trp1208Cys	p.W1208C	ENST00000322507	NM_004370.5	1208	tgG/tgT	0	
CEP85L	387119		GRCh37	6	118786675	118786675	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_094																					ENST00000368491.3:c.2311A>G	p.Lys771Glu	p.K771E	ENST00000368491	NM_001042475.2	771	Aaa/Gaa	0	
AP5Z1	9907		GRCh37	7	4829494	4829494	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_094																					ENST00000348624.4:c.1739C>G	p.Ala580Gly	p.A580G	ENST00000348624	NM_014855.2	580	gCg/gGg	0	
GARS	2617		GRCh37	7	30640801	30640801	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_094																					ENST00000389266.3:c.554C>G	p.Pro185Arg	p.P185R	ENST00000389266	NM_002047.2	185	cCt/cGt	0	
EGFR	1956		GRCh37	7	55220253	55220253	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_094																					ENST00000275493.2:c.643T>C	p.Cys215Arg	p.C215R	ENST00000275493	NM_005228.3	215	Tgt/Cgt	0	
ERV3-1	2086		GRCh37	7	64452785	64452785	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_094																					ENST00000394323.2:c.620C>G	p.Pro207Arg	p.P207R	ENST00000394323	NM_001007253.3	207	cCa/cGa	0	
RELN	5649		GRCh37	7	103185571	103185571	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_094																					ENST00000428762.1:c.6523G>C	p.Gly2175Arg	p.G2175R	ENST00000428762	NM_005045.3	2175	Ggt/Cgt	0	
OSR2	116039		GRCh37	8	99961769	99961769	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_094																					ENST00000297565.4:c.589G>T	p.Glu197Ter	p.E197*	ENST00000297565	NM_001142462.1	197	Gag/Tag	0	
RIMS2	9699		GRCh37	8	105263981	105263981	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_094																					ENST00000406091.3:c.3983C>T	p.Pro1328Leu	p.P1328L	ENST00000406091	NM_001100117.2	1328	cCt/cTt	0	
CYP11B2	1585		GRCh37	8	143999204	143999204	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_094																					ENST00000323110.2:c.53T>A	p.Leu18Gln	p.L18Q	ENST00000323110	NM_000498.3	18	cTg/cAg	0	
GABBR2	9568		GRCh37	9	101068403	101068403	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_094																					ENST00000259455.2:c.2229G>C	p.Lys743Asn	p.K743N	ENST00000259455	NM_005458.7	743	aaG/aaC	0	
C9orf84			GRCh37	9	114500563	114500563	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_094																					ENST00000318737.4:c.1222G>A	p.Glu408Lys	p.E408K	ENST00000318737	NM_173521.3	408	Gaa/Aaa	0	
C5	727		GRCh37	9	123742480	123742480	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_094																					ENST00000223642.1:c.3539T>C	p.Leu1180Pro	p.L1180P	ENST00000223642	NM_001735.2	1180	cTg/cCg	0	
GOLGA2	2801		GRCh37	9	131022404	131022404	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_094																					ENST00000421699.2:c.1742G>A	p.Gly581Glu	p.G581E	ENST00000421699	NM_004486.4	581	gGa/gAa	0	
FAM73B			GRCh37	9	131825570	131825570	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_094																					ENST00000358369.4:c.1058T>C	p.Leu353Pro	p.L353P	ENST00000358369	NM_032809.2	353	cTg/cCg	0	
CACNA1B	774		GRCh37	9	140953543	140953543	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_094																					ENST00000371372.1:c.4486C>T	p.Pro1496Ser	p.P1496S	ENST00000371372	NM_001243812.1	1496	Ccc/Tcc	0	
ZNF485	220992		GRCh37	10	44112200	44112200	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_094																					ENST00000361807.3:c.709A>G	p.Thr237Ala	p.T237A	ENST00000361807	NM_145312.3	237	Act/Gct	0	
CDH23	64072		GRCh37	10	73569630	73569630	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_094																					ENST00000224721.6:c.8791G>A	p.Gly2931Ser	p.G2931S	ENST00000224721	NM_022124.5	2931	Ggc/Agc	0	
PPP3CB	5532		GRCh37	10	75206289	75206289	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_094																					ENST00000360663.5:c.1229G>C	p.Arg410Pro	p.R410P	ENST00000360663		410	cGa/cCa	0	
CYP2C8	1558		GRCh37	10	96802776	96802776	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_094																					ENST00000371270.3:c.1020G>T	p.Gln340His	p.Q340H	ENST00000371270	NM_000770.3	340	caG/caT	0	
AL450307.1			GRCh37	10	133608182	133608182	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_094																					ENST00000341866.3:c.194G>T	p.Gly65Val	p.G65V	ENST00000341866		65	gGg/gTg	0	
OR4C12	283093		GRCh37	11	50003406	50003406	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_094																					ENST00000335238.4:c.632T>C	p.Ile211Thr	p.I211T	ENST00000335238	NM_001005270.2	211	aTc/aCc	0	
TENM4	26011		GRCh37	11	78614436	78614436	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_094																					ENST00000278550.7:c.626G>A	p.Ser209Asn	p.S209N	ENST00000278550	NM_001098816.2	209	aGc/aAc	0	
SLCO1C1	53919		GRCh37	12	20858975	20858975	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_094																					ENST00000266509.2:c.364G>C	p.Gly122Arg	p.G122R	ENST00000266509	NM_017435.4	122	Gga/Cga	0	
C12orf55			GRCh37	12	96927937	96927937	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_094																					ENST00000524981.4:c.1637T>C	p.Ile546Thr	p.I546T	ENST00000524981		546	aTc/aCc	0	
SETD1B	23067		GRCh37	12	122260635	122260635	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_094																					ENST00000604567.1:c.4150G>T	p.Gly1384Cys	p.G1384C	ENST00000604567		1384	Ggc/Tgc	0	
TRIP11	9321		GRCh37	14	92482205	92482205	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_094																					ENST00000267622.4:c.658G>T	p.Glu220Ter	p.E220*	ENST00000267622	NM_004239.3	220	Gaa/Taa	0	
TYRO3	7301		GRCh37	15	41865249	41865249	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_094																					ENST00000263798.3:c.1925G>A	p.Gly642Asp	p.G642D	ENST00000263798	NM_006293.3	642	gGc/gAc	0	
KCTD19	146212		GRCh37	16	67335797	67335797	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_094																					ENST00000304372.5:c.672A>C	p.Leu224Phe	p.L224F	ENST00000304372	NM_001100915.1	224	ttA/ttC	0	
ZFHX3	463		GRCh37	16	72822702	72822702	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_094																					ENST00000268489.5:c.9473C>A	p.Thr3158Asn	p.T3158N	ENST00000268489	NM_006885.3	3158	aCt/aAt	0	
TP53	7157		GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_094																					ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga	0	
TTLL6	284076		GRCh37	17	46862521	46862521	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_094																					ENST00000393382.3:c.1804C>T	p.Leu602Phe	p.L602F	ENST00000393382	NM_001130918.1	602	Ctc/Ttc	0	
FN3K	64122		GRCh37	17	80708333	80708333	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_094																					ENST00000300784.7:c.632C>T	p.Pro211Leu	p.P211L	ENST00000300784	NM_022158.3	211	cCc/cTc	0	
CIDEA	1149		GRCh37	18	12277219	12277219	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_094																					ENST00000320477.9:c.610G>C	p.Glu204Gln	p.E204Q	ENST00000320477	NM_001279.3	204	Gag/Cag	0	
CDH19	28513		GRCh37	18	64218496	64218496	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BB01_094																					ENST00000262150.2:c.611-1G>C		p.X204_splice	ENST00000262150	NM_021153.3	204		0	
AP1M2	10053		GRCh37	19	10689585	10689585	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_094																					ENST00000250244.6:c.871G>A	p.Val291Met	p.V291M	ENST00000250244	NM_005498.4	291	Gtg/Atg	0	
SLC8A2	6543		GRCh37	19	47969432	47969432	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_094																					ENST00000236877.6:c.229G>T	p.Val77Leu	p.V77L	ENST00000236877	NM_015063.2	77	Gtg/Ttg	0	
VN1R4	317703		GRCh37	19	53770918	53770918	+	start_lost	Translation_Start_Site	SNP	T	T	C			brca_smc_2018_BB01_094																					ENST00000311170.4:c.1A>G	p.Met1?	p.M1?	ENST00000311170	NM_173857.2	1	Atg/Gtg	0	
PEG3	5178		GRCh37	19	57326452	57326452	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_094																					ENST00000326441.9:c.3358A>C	p.Thr1120Pro	p.T1120P	ENST00000326441	NM_006210.2	1120	Aca/Cca	0	
ZNF135	7694		GRCh37	19	58578463	58578463	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_094																					ENST00000313434.5:c.611T>C	p.Leu204Ser	p.L204S	ENST00000313434	NM_003436.3	204	tTa/tCa	0	
SSTR4	6754		GRCh37	20	23017277	23017277	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_094																					ENST00000255008.3:c.1157C>G	p.Thr386Ser	p.T386S	ENST00000255008	NM_001052.2	386	aCc/aGc	0	
EPHB2	2048		GRCh37	1	23110936	23110936	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_067																					ENST00000400191.3:c.178C>G	p.Gln60Glu	p.Q60E	ENST00000400191	NM_004442.6	60	Cag/Gag	0	
USP24	23358		GRCh37	1	55559681	55559681	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_067																					ENST00000294383.6:c.6283C>G	p.Leu2095Val	p.L2095V	ENST00000294383	NM_015306.2	2095	Ctt/Gtt	0	
WDR78	79819		GRCh37	1	67288105	67288105	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_067																					ENST00000371026.3:c.2435G>A	p.Ser812Asn	p.S812N	ENST00000371026	NM_024763.4	812	aGt/aAt	0	
NRAS	4893		GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_067																					ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt	0	
GABPB2	126626		GRCh37	1	151060702	151060702	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_067																					ENST00000368918.3:c.37G>T	p.Ala13Ser	p.A13S	ENST00000368918	NM_144618.2	13	Gca/Tca	0	
EDEM3	80267		GRCh37	1	184675828	184675828	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_067																					ENST00000318130.8:c.2152G>C	p.Glu718Gln	p.E718Q	ENST00000318130	NM_025191.3	718	Gaa/Caa	0	
PKP1	5317		GRCh37	1	201291230	201291230	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_067																					ENST00000263946.3:c.1535G>A	p.Gly512Asp	p.G512D	ENST00000263946	NM_000299.3	512	gGc/gAc	0	
ADIPOR1	51094		GRCh37	1	202914213	202914213	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_067																					ENST00000340990.5:c.515T>C	p.Val172Ala	p.V172A	ENST00000340990	NM_015999.4	172	gTt/gCt	0	
NVL	4931		GRCh37	1	224475670	224475670	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_067																					ENST00000281701.6:c.1601T>G	p.Leu534Trp	p.L534W	ENST00000281701	NM_002533.3	534	tTg/tGg	0	
C1orf229	388759		GRCh37	1	247275141	247275141	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_067																					ENST00000408893.2:c.386C>A	p.Ala129Glu	p.A129E	ENST00000408893	NM_207401.1	129	gCg/gAg	0	
ZC3H6	376940		GRCh37	2	113081793	113081793	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_067																					ENST00000343936.4:c.1405C>T	p.Pro469Ser	p.P469S	ENST00000343936		469	Cct/Tct	0	
TRPM8	79054		GRCh37	2	234873385	234873385	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_067																					ENST00000324695.4:c.1863C>G	p.Tyr621Ter	p.Y621*	ENST00000324695	NM_024080.4	621	taC/taG	0	
CCDC36	339834		GRCh37	3	49281862	49281862	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_067																					ENST00000296449.5:c.421A>C	p.Asn141His	p.N141H	ENST00000296449	NM_178173.3	141	Aat/Cat	0	
IFRD2	7866		GRCh37	3	50329816	50329816	+	5_prime_UTR_variant	5'UTR	SNP	G	G	T			brca_smc_2018_BB01_067																					ENST00000417626.2:c.-111C>A		p.*37*	ENST00000417626	NM_006764.4			0	
CPOX	1371		GRCh37	3	98312156	98312156	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_067																					ENST00000264193.2:c.193G>T	p.Gly65Cys	p.G65C	ENST00000264193	NM_000097.5	65	Ggc/Tgc	0	
BOC	91653		GRCh37	3	112987254	112987254	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_067																					ENST00000355385.3:c.485G>C	p.Arg162Pro	p.R162P	ENST00000355385	NM_033254.2	162	cGg/cCg	0	
SI	6476		GRCh37	3	164785167	164785167	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_067																					ENST00000264382.3:c.596T>G	p.Phe199Cys	p.F199C	ENST00000264382	NM_001041.3	199	tTt/tGt	0	
ANKRD17	26057		GRCh37	4	73990662	73990662	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_067																					ENST00000358602.4:c.3460C>G	p.Leu1154Val	p.L1154V	ENST00000358602	NM_032217.3	1154	Ctc/Gtc	0	
PKD2	5311		GRCh37	4	88929354	88929354	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_067																					ENST00000237596.2:c.469C>G	p.Arg157Gly	p.R157G	ENST00000237596	NM_000297.3	157	Cga/Gga	0	
TACR3	6870		GRCh37	4	104579541	104579541	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_067																					ENST00000304883.2:c.568C>T	p.Pro190Ser	p.P190S	ENST00000304883	NM_001059.2	190	Ccc/Tcc	0	
DCHS2	54798		GRCh37	4	155161759	155161759	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_067																					ENST00000357232.4:c.5924A>C	p.Glu1975Ala	p.E1975A	ENST00000357232	NM_017639.3	1975	gAg/gCg	0	
PPIP5K2	23262		GRCh37	5	102482320	102482320	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_067																					ENST00000358359.3:c.577G>A	p.Asp193Asn	p.D193N	ENST00000358359	NM_001281471.1	193	Gat/Aat	0	
GPRIN1	114787		GRCh37	5	176024255	176024255	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_067																					ENST00000303991.4:c.2581G>A	p.Val861Met	p.V861M	ENST00000303991	NM_052899.2	861	Gtg/Atg	0	
FOXQ1	94234		GRCh37	6	1313528	1313528	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_067																					ENST00000296839.2:c.589A>C	p.Asn197His	p.N197H	ENST00000296839	NM_033260.3	197	Aac/Cac	0	
AARS2	57505		GRCh37	6	44270148	44270148	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_067																					ENST00000244571.4:c.2467G>A	p.Asp823Asn	p.D823N	ENST00000244571	NM_020745.3	823	Gac/Aac	0	
PKHD1	5314		GRCh37	6	51907822	51907822	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_067																					ENST00000371117.3:c.2932C>G	p.Gln978Glu	p.Q978E	ENST00000371117	NM_138694.3	978	Cag/Gag	0	
TTK	7272		GRCh37	6	80736094	80736094	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			brca_smc_2018_BB01_067																					ENST00000369798.2:c.1258-1G>T		p.X420_splice	ENST00000369798	NM_003318.4	420		0	
RARS2	57038		GRCh37	6	88239318	88239318	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_067																					ENST00000369536.5:c.820G>C	p.Glu274Gln	p.E274Q	ENST00000369536	NM_020320.3	274	Gaa/Caa	0	
CLVS2	134829		GRCh37	6	123332141	123332141	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_067																					ENST00000275162.5:c.401T>G	p.Val134Gly	p.V134G	ENST00000275162	NM_001010852.3	134	gTg/gGg	0	
STAG3	10734		GRCh37	7	99778229	99778229	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_067																					ENST00000317296.5:c.50C>T	p.Ser17Phe	p.S17F	ENST00000317296	NM_012447.2	17	tCt/tTt	0	
MUC12	10071		GRCh37	7	100643590	100643590	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_067																					ENST00000379442.3:c.10175G>T	p.Trp3392Leu	p.W3392L	ENST00000379442		3392	tGg/tTg	0	
PPP1R3A	5506		GRCh37	7	113519793	113519793	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_067																					ENST00000284601.3:c.1354C>A	p.Gln452Lys	p.Q452K	ENST00000284601	NM_002711.3	452	Caa/Aaa	0	
PTPRZ1	5803		GRCh37	7	121653841	121653841	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_067																					ENST00000393386.2:c.4741A>T	p.Ile1581Phe	p.I1581F	ENST00000393386	NM_001206838.1	1581	Atc/Ttc	0	
ASAH1	427		GRCh37	8	17924741	17924741	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_067																					ENST00000262097.6:c.370G>C	p.Asp124His	p.D124H	ENST00000262097	NM_177924.3	124	Gat/Cat	0	
PREX2	80243		GRCh37	8	69030811	69030811	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_067																					ENST00000288368.4:c.3353T>G	p.Ile1118Ser	p.I1118S	ENST00000288368	NM_024870.2	1118	aTc/aGc	0	
KCNB2	9312		GRCh37	8	73480005	73480005	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_067																					ENST00000523207.1:c.36G>C	p.Lys12Asn	p.K12N	ENST00000523207	NM_004770.2	12	aaG/aaC	0	
AC023632.1			GRCh37	8	95559162	95559162	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_067																					ENST00000391679.1:c.116C>G	p.Ala39Gly	p.A39G	ENST00000391679		39	gCt/gGt	0	
ZNF696	79943		GRCh37	8	144378736	144378736	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_067																					ENST00000330143.3:c.891C>A	p.Asp297Glu	p.D297E	ENST00000330143	NM_030895.2	297	gaC/gaA	0	
JAK2	3717		GRCh37	9	5090909	5090909	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_067																					ENST00000381652.3:c.3057C>G	p.Phe1019Leu	p.F1019L	ENST00000381652	NM_004972.3	1019	ttC/ttG	0	
FOCAD	54914		GRCh37	9	20948865	20948865	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_067																					ENST00000338382.6:c.3814C>A	p.Leu1272Ile	p.L1272I	ENST00000338382		1272	Ctt/Att	0	
SARDH	1757		GRCh37	9	136582573	136582573	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_067																					ENST00000371872.4:c.1025C>G	p.Ser342Ter	p.S342*	ENST00000371872	NM_007101.3	342	tCa/tGa	0	
BMI1	648		GRCh37	10	22618437	22618437	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_067																					ENST00000376663.3:c.947C>G	p.Ser316Ter	p.S316*	ENST00000376663	NM_005180.8	316	tCa/tGa	0	
CSGALNACT2	55454		GRCh37	10	43651198	43651198	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_067																					ENST00000374466.3:c.601G>C	p.Glu201Gln	p.E201Q	ENST00000374466	NM_018590.4	201	Gaa/Caa	0	
OR51G2	81282		GRCh37	11	4936722	4936722	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_067																					ENST00000322013.3:c.172C>T	p.Arg58Cys	p.R58C	ENST00000322013	NM_001005238.1	58	Cgc/Tgc	0	
OR4P4	81300		GRCh37	11	55406164	55406164	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_067																					ENST00000314612.2:c.331T>G	p.Phe111Val	p.F111V	ENST00000314612	NM_001004124.1	111	Ttc/Gtc	0	
SHANK2	22941		GRCh37	11	70333267	70333267	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_067																					ENST00000423696.2:c.1994G>A	p.Ser665Asn	p.S665N	ENST00000423696		665	aGc/aAc	0	
WNT5B	81029		GRCh37	12	1748895	1748895	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_067																					ENST00000310594.3:c.374T>C	p.Val125Ala	p.V125A	ENST00000310594	NM_030775.2	125	gTg/gCg	0	
ATN1	1822		GRCh37	12	7045128	7045128	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_067																					ENST00000356654.4:c.698T>G	p.Met233Arg	p.M233R	ENST00000356654	NM_001007026.1	233	aTg/aGg	0	
CLEC12A	160364		GRCh37	12	10133228	10133228	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_067																					ENST00000304361.4:c.427A>C	p.Ser143Arg	p.S143R	ENST00000304361	NM_138337.5	143	Agc/Cgc	0	
PTPRO	5800		GRCh37	12	15734612	15734612	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BB01_067																					ENST00000281171.4:c.3133-1G>A		p.X1045_splice	ENST00000281171	NM_030667.2	1045		0	
OVCH1	341350		GRCh37	12	29596309	29596309	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_067																					ENST00000318184.5:c.3142G>C	p.Gly1048Arg	p.G1048R	ENST00000318184	NM_183378.2	1048	Gga/Cga	0	
DDX23	9416		GRCh37	12	49224299	49224299	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_067																					ENST00000308025.3:c.2416G>C	p.Gly806Arg	p.G806R	ENST00000308025	NM_004818.2	806	Ggc/Cgc	0	
TROAP	10024		GRCh37	12	49724561	49724561	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_067																					ENST00000257909.3:c.1933G>A	p.Glu645Lys	p.E645K	ENST00000257909	NM_005480.3	645	Gag/Aag	0	
FGD6	55785		GRCh37	12	95603242	95603242	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_067																					ENST00000343958.4:c.1818A>T	p.Leu606Phe	p.L606F	ENST00000343958	NM_018351.3	606	ttA/ttT	0	
B3GNT4	79369		GRCh37	12	122691701	122691701	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_067																					ENST00000324189.4:c.903C>A	p.Phe301Leu	p.F301L	ENST00000324189	NM_030765.2	301	ttC/ttA	0	
P2RX2	22953		GRCh37	12	133196457	133196457	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_067																					ENST00000389110.3:c.409C>G	p.Leu137Val	p.L137V	ENST00000389110	NM_170682.2	137	Ctc/Gtc	0	
RNASE2	6036		GRCh37	14	21424207	21424207	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_067																					ENST00000304625.2:c.277A>G	p.Lys93Glu	p.K93E	ENST00000304625	NM_002934.2	93	Aaa/Gaa	0	
ZFYVE26	23503		GRCh37	14	68250103	68250103	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_067																					ENST00000347230.4:c.3766C>G	p.Leu1256Val	p.L1256V	ENST00000347230	NM_015346.3	1256	Ctg/Gtg	0	
AK7	122481		GRCh37	14	96922708	96922708	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_067																					ENST00000267584.4:c.1123C>G	p.Pro375Ala	p.P375A	ENST00000267584	NM_152327.3	375	Ccc/Gcc	0	
PIF1	80119		GRCh37	15	65113365	65113365	+	splice_donor_variant	Splice_Site	SNP	C	C	A			brca_smc_2018_BB01_067																					ENST00000268043.4:c.1086+1G>T		p.X362_splice	ENST00000268043		362		0	
MYO9A	4649		GRCh37	15	72190942	72190942	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_067																					ENST00000356056.5:c.3902C>T	p.Ser1301Leu	p.S1301L	ENST00000356056	NM_006901.3	1301	tCa/tTa	0	
CES3	23491		GRCh37	16	67000223	67000223	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_067																					ENST00000303334.4:c.896A>G	p.Glu299Gly	p.E299G	ENST00000303334	NM_024922.5	299	gAa/gGa	0	
SLC2A4	6517		GRCh37	17	7186791	7186791	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BB01_067																					ENST00000317370.8:c.151-1G>A		p.X51_splice	ENST00000317370	NM_001042.2	51		0	
EIF4A1	1973		GRCh37	17	7480390	7480390	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_067																					ENST00000293831.8:c.531G>C	p.Lys177Asn	p.K177N	ENST00000293831	NM_001416.3	177	aaG/aaC	0	
TP53	7157		GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_067																					ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt	0	
AOC2	314		GRCh37	17	40997337	40997337	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_067																					ENST00000253799.3:c.694C>G	p.Leu232Val	p.L232V	ENST00000253799	NM_009590.2	232	Ctt/Gtt	0	
USP32	84669		GRCh37	17	58270256	58270256	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_067																					ENST00000300896.4:c.3470T>C	p.Leu1157Pro	p.L1157P	ENST00000300896	NM_032582.3	1157	cTa/cCa	0	
RP11-1055B8.7			GRCh37	17	79425741	79425741	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_067																					ENST00000307745.7:c.5438C>A	p.Ala1813Asp	p.A1813D	ENST00000307745		1813	gCc/gAc	0	
ACTG1	71		GRCh37	17	79477995	79477995	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_067																					ENST00000331925.2:c.942G>T	p.Gln314His	p.Q314H	ENST00000331925	NM_001614.3	314	caG/caT	0	
GREB1L	80000		GRCh37	18	18963600	18963600	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_067																					ENST00000424526.1:c.121T>G	p.Tyr41Asp	p.Y41D	ENST00000424526	NM_001142966.1	41	Tac/Gac	0	
ZNF24	7572		GRCh37	18	32917409	32917409	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_067																					ENST00000261332.6:c.894G>C	p.Gln298His	p.Q298H	ENST00000261332	NM_006965.2	298	caG/caC	0	
MYO5B	4645		GRCh37	18	47429153	47429153	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_067																					ENST00000285039.7:c.2622G>C	p.Trp874Cys	p.W874C	ENST00000285039	NM_001080467.2	874	tgG/tgC	0	
LDLR	3949		GRCh37	19	11217324	11217324	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_067																					ENST00000558518.1:c.778G>A	p.Asp260Asn	p.D260N	ENST00000558518	NM_001195798.1	260	Gac/Aac	0	
CACNA1A	773		GRCh37	19	13363865	13363865	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_067																					ENST00000360228.5:c.4806C>G	p.Ile1602Met	p.I1602M	ENST00000360228	NM_001127222.1	1602	atC/atG	0	
NOTCH3	4854		GRCh37	19	15298726	15298726	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_067																					ENST00000263388.2:c.1572C>A	p.Asp524Glu	p.D524E	ENST00000263388	NM_000435.2	524	gaC/gaA	0	
ZNF850	342892		GRCh37	19	37239952	37239952	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_067																					ENST00000591344.1:c.1990C>T	p.His664Tyr	p.H664Y	ENST00000591344	NM_001193552.1	664	Cac/Tac	0	
FPR1	2357		GRCh37	19	52249779	52249779	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_067																					ENST00000304748.4:c.469A>C	p.Thr157Pro	p.T157P	ENST00000304748	NM_002029.3	157	Aca/Cca	0	
NXT1	29107		GRCh37	20	23334997	23334997	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_067																					ENST00000254998.2:c.319C>T	p.Arg107Trp	p.R107W	ENST00000254998	NM_013248.2	107	Cgg/Tgg	0	
HCK	3055		GRCh37	20	30662463	30662463	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_067																					ENST00000534862.1:c.307C>G	p.Arg103Gly	p.R103G	ENST00000534862	NM_001172132.1	103	Cgg/Ggg	0	
COL20A1	57642		GRCh37	20	61959722	61959722	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_067																					ENST00000358894.6:c.3653G>A	p.Arg1218Lys	p.R1218K	ENST00000358894	NM_020882.2	1218	aGg/aAg	0	
SYNJ1	8867		GRCh37	21	34100266	34100266	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_067																					ENST00000433931.2:c.86G>C	p.Arg29Pro	p.R29P	ENST00000433931	NM_003895.3	29	cGg/cCg	0	
IFNAR2	3455		GRCh37	21	34633010	34633010	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_067																					ENST00000342136.4:c.818G>C	p.Arg273Thr	p.R273T	ENST00000342136		273	aGa/aCa	0	
TTLL8	164714		GRCh37	22	50454890	50454890	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_067																					ENST00000433387.1:c.2353C>T	p.Leu785Phe	p.L785F	ENST00000433387		785	Ctc/Ttc	0	
AMER1	139285		GRCh37	X	63410243	63410243	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_067																					ENST00000330258.3:c.2924T>C	p.Ile975Thr	p.I975T	ENST00000330258	NM_152424.3	975	aTa/aCa	0	
DLG3	1741		GRCh37	X	69665239	69665239	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_067																					ENST00000374360.3:c.188C>T	p.Ala63Val	p.A63V	ENST00000374360	NM_021120.3	63	gCg/gTg	0	
WDR44	54521		GRCh37	X	117582903	117582903	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_067																					ENST00000254029.3:c.2695A>T	p.Thr899Ser	p.T899S	ENST00000254029	NM_019045.4	899	Act/Tct	0	
CXorf66	347487		GRCh37	X	139038427	139038427	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_067																					ENST00000370540.1:c.714G>T	p.Lys238Asn	p.K238N	ENST00000370540	NM_001013403.2	238	aaG/aaT	0	
VPS54	51542		GRCh37	2	64211054	64211054	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_120																					ENST00000272322.4:c.80C>T	p.Ser27Leu	p.S27L	ENST00000272322		27	tCa/tTa	0	
GPR17	2840		GRCh37	2	128409097	128409097	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_120																					ENST00000272644.3:c.872G>A	p.Arg291His	p.R291H	ENST00000272644	NM_001161417.1	291	cGc/cAc	0	
ULK4	54986		GRCh37	3	41938389	41938389	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_120																					ENST00000301831.4:c.1455G>T	p.Lys485Asn	p.K485N	ENST00000301831	NM_017886.2	485	aaG/aaT	0	
ATP6V1A	523		GRCh37	3	113522487	113522487	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_120																					ENST00000273398.3:c.1552G>T	p.Asp518Tyr	p.D518Y	ENST00000273398	NM_001690.3	518	Gat/Tat	0	
MSX1	4487		GRCh37	4	4864730	4864730	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_120																					ENST00000382723.4:c.772G>A	p.Gly258Ser	p.G258S	ENST00000382723	NM_002448.3	258	Ggc/Agc	0	
UGT2B28	54490		GRCh37	4	70152551	70152551	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_120																					ENST00000335568.5:c.952G>A	p.Ala318Thr	p.A318T	ENST00000335568	NM_053039.1	318	Gca/Aca	0	
ERAP2	64167		GRCh37	5	96232119	96232119	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_120																					ENST00000437043.3:c.1282G>T	p.Asp428Tyr	p.D428Y	ENST00000437043	NM_001130140.1	428	Gat/Tat	0	
SEMA6A	57556		GRCh37	5	115783499	115783499	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_120																					ENST00000343348.6:c.1903C>T	p.Arg635Trp	p.R635W	ENST00000343348	NM_020796.3	635	Cgg/Tgg	0	
ARAP3	64411		GRCh37	5	141046104	141046104	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_120																					ENST00000239440.4:c.2459G>C	p.Trp820Ser	p.W820S	ENST00000239440	NM_022481.5	820	tGg/tCg	0	
ELP4	26610		GRCh37	11	31531345	31531345	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_120																					ENST00000350638.5:c.14C>A	p.Ala5Glu	p.A5E	ENST00000350638	NM_019040.3	5	gCa/gAa	0	
ATP7B	540		GRCh37	13	52539111	52539111	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_120																					ENST00000242839.4:c.1766C>T	p.Thr589Ile	p.T589I	ENST00000242839	NM_000053.3	589	aCa/aTa	0	
ITGBL1	9358		GRCh37	13	102250514	102250514	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_120																					ENST00000376180.3:c.880T>G	p.Cys294Gly	p.C294G	ENST00000376180	NM_004791.2	294	Tgt/Ggt	0	
ZNF839	55778		GRCh37	14	102786223	102786223	+	intron_variant	Intron	SNP	C	C	A			brca_smc_2018_BB01_120																					ENST00000558850.1:c.-61+2220C>A		p.*21*	ENST00000558850	NM_001267827.1			0	
UACA	55075		GRCh37	15	70957003	70957003	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_120																					ENST00000322954.6:c.4111G>T	p.Ala1371Ser	p.A1371S	ENST00000322954	NM_018003.2	1371	Gcc/Tcc	0	
CACNG3	10368		GRCh37	16	24372846	24372846	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_120																					ENST00000005284.3:c.610C>T	p.His204Tyr	p.H204Y	ENST00000005284	NM_006539.3	204	Cat/Tat	0	
MVP	9961		GRCh37	16	29858549	29858549	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_120																					ENST00000357402.5:c.2297G>A	p.Arg766Gln	p.R766Q	ENST00000357402	NM_017458.3	766	cGa/cAa	0	
ZNF668	79759		GRCh37	16	31073548	31073548	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_120																					ENST00000394983.2:c.701C>T	p.Ser234Phe	p.S234F	ENST00000394983		234	tCc/tTc	0	
ZNF843	283933		GRCh37	16	31448115	31448115	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_120																					ENST00000315678.5:c.56C>A	p.Thr19Asn	p.T19N	ENST00000315678	NM_001136509.1	19	aCc/aAc	0	
TP53	7157		GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_120																					ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc	0	
ZNF569	148266		GRCh37	19	37903573	37903573	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_120																					ENST00000316950.6:c.1987C>T	p.His663Tyr	p.H663Y	ENST00000316950	NM_152484.2	663	Cac/Tac	0	
KIR2DL4	3805		GRCh37	19	55317421	55317421	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_120																					ENST00000345540.5:c.377C>A	p.Pro126His	p.P126H	ENST00000345540	NM_001080770.1	126	cCt/cAt	0	
MYH7B	57644		GRCh37	20	33583224	33583224	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_120																					ENST00000262873.7:c.2912T>A	p.Leu971Gln	p.L971Q	ENST00000262873	NM_020884.3	971	cTg/cAg	0	
RNF215	200312		GRCh37	22	30783065	30783065	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_120																					ENST00000382363.3:c.238G>T	p.Gly80Cys	p.G80C	ENST00000382363	NM_001017981.1	80	Ggc/Tgc	0	
MOV10L1	54456		GRCh37	22	50555695	50555695	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_120																					ENST00000262794.5:c.1369C>T	p.Arg457Cys	p.R457C	ENST00000262794	NM_018995.2	457	Cgc/Tgc	0	
PLCH2	9651		GRCh37	1	2430631	2430631	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_044																					ENST00000378486.3:c.2543T>G	p.Ile848Ser	p.I848S	ENST00000378486	NM_014638.2	848	aTt/aGt	0	
SMAP2	64744		GRCh37	1	40881957	40881957	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_044																					ENST00000372718.3:c.791C>G	p.Ser264Cys	p.S264C	ENST00000372718	NM_022733.2	264	tCt/tGt	0	
IPO13	9670		GRCh37	1	44424533	44424533	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_044																					ENST00000372343.3:c.2000A>G	p.Lys667Arg	p.K667R	ENST00000372343	NM_014652.3	667	aAg/aGg	0	
SPATA6	54558		GRCh37	1	48821381	48821381	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_044																					ENST00000371847.3:c.1155T>G	p.Asn385Lys	p.N385K	ENST00000371847	NM_019073.2	385	aaT/aaG	0	
EPS8L3	79574		GRCh37	1	110293333	110293333	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_044																					ENST00000361965.4:c.1719G>T	p.Gln573His	p.Q573H	ENST00000361965		573	caG/caT	0	
DNM3	26052		GRCh37	1	172277948	172277948	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_044																					ENST00000355305.5:c.1880T>C	p.Leu627Pro	p.L627P	ENST00000355305		627	cTa/cCa	0	
SUSD4	55061		GRCh37	1	223438001	223438001	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_044																					ENST00000343846.3:c.695C>T	p.Ser232Phe	p.S232F	ENST00000343846		232	tCc/tTc	0	
OR2M2	391194		GRCh37	1	248343951	248343951	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_044																					ENST00000359682.2:c.664A>T	p.Ile222Phe	p.I222F	ENST00000359682	NM_001004688.1	222	Att/Ttt	0	
PPP1CB	5500		GRCh37	2	29004625	29004625	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_044																					ENST00000296122.6:c.437A>G	p.Lys146Arg	p.K146R	ENST00000296122		146	aAa/aGa	0	
BIRC6	57448		GRCh37	2	32768359	32768359	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_044																					ENST00000421745.2:c.12343G>T	p.Asp4115Tyr	p.D4115Y	ENST00000421745	NM_016252.3	4115	Gat/Tat	0	
EFEMP1	2202		GRCh37	2	56144929	56144929	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_044																					ENST00000355426.3:c.388A>C	p.Met130Leu	p.M130L	ENST00000355426		130	Atg/Ctg	0	
IRS1	3667		GRCh37	2	227663380	227663380	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_044																					ENST00000305123.5:c.75G>A	p.Met25Ile	p.M25I	ENST00000305123	NM_005544.2	25	atG/atA	0	
TWF2	11344		GRCh37	3	52263205	52263205	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_044																					ENST00000305533.5:c.895G>T	p.Asp299Tyr	p.D299Y	ENST00000305533	NM_007284.3	299	Gat/Tat	0	
GOLGB1	2804		GRCh37	3	121413546	121413546	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_044																					ENST00000340645.5:c.5809A>G	p.Ile1937Val	p.I1937V	ENST00000340645	NM_001256487.1	1937	Att/Gtt	0	
EIF4G1	1981		GRCh37	3	184042723	184042723	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_044																					ENST00000346169.2:c.2677C>G	p.Arg893Gly	p.R893G	ENST00000346169	NM_198241.2	893	Cgg/Ggg	0	
RP11-433C9.2			GRCh37	3	184144422	184144422	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_044																					ENST00000419960.1:c.85G>C	p.Asp29His	p.D29H	ENST00000419960		29	Gat/Cat	0	
HRG	3273		GRCh37	3	186395008	186395008	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_044																					ENST00000232003.4:c.914A>G	p.Asp305Gly	p.D305G	ENST00000232003	NM_000412.2	305	gAt/gGt	0	
PCDHB12	56124		GRCh37	5	140588753	140588753	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_044																					ENST00000239450.2:c.274A>T	p.Arg92Trp	p.R92W	ENST00000239450	NM_018932.3	92	Agg/Tgg	0	
MED7	9443		GRCh37	5	156566300	156566300	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_044																					ENST00000286317.5:c.143A>C	p.Gln48Pro	p.Q48P	ENST00000286317	NM_004270.4	48	cAg/cCg	0	
NELFE	7936		GRCh37	6	31922111	31922111	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_044																					ENST00000375429.3:c.851G>C	p.Gly284Ala	p.G284A	ENST00000375429	NM_002904.5	284	gGa/gCa	0	
GPR111			GRCh37	6	47650232	47650232	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_044																					ENST00000296862.1:c.1937T>G	p.Val646Gly	p.V646G	ENST00000296862		646	gTg/gGg	0	
DST	667		GRCh37	6	56417557	56417557	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_044																					ENST00000244364.6:c.8164G>T	p.Asp2722Tyr	p.D2722Y	ENST00000244364	NM_015548.4	2722	Gac/Tac	0	
MTHFD1L	25902		GRCh37	6	151281466	151281466	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_044																					ENST00000367321.3:c.1859A>G	p.Asp620Gly	p.D620G	ENST00000367321	NM_001242768.1	620	gAc/gGc	0	
SYNE1	23345		GRCh37	6	152631946	152631946	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_044																					ENST00000367255.5:c.16773G>T	p.Gln5591His	p.Q5591H	ENST00000367255	NM_182961.3	5591	caG/caT	0	
NFE2L3	9603		GRCh37	7	26225230	26225230	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_044																					ENST00000056233.3:c.1912C>G	p.Leu638Val	p.L638V	ENST00000056233	NM_004289.6	638	Ctg/Gtg	0	
VWC2	375567		GRCh37	7	49815194	49815194	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_044																					ENST00000340652.4:c.163G>C	p.Gly55Arg	p.G55R	ENST00000340652	NM_198570.3	55	Ggc/Cgc	0	
WBSCR28			GRCh37	7	73279653	73279653	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_044																					ENST00000320531.2:c.403C>G	p.Leu135Val	p.L135V	ENST00000320531	NM_182504.3	135	Ctg/Gtg	0	
PON1	5444		GRCh37	7	94953751	94953751	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_044																					ENST00000222381.3:c.37G>C	p.Gly13Arg	p.G13R	ENST00000222381	NM_000446.5	13	Gga/Cga	0	
ZNF438	220929		GRCh37	10	31134428	31134428	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_044																					ENST00000361310.3:c.1949G>C	p.Gly650Ala	p.G650A	ENST00000361310		650	gGt/gCt	0	
TM9SF3	56889		GRCh37	10	98336406	98336406	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_044																					ENST00000371142.4:c.283G>A	p.Asp95Asn	p.D95N	ENST00000371142	NM_020123.3	95	Gat/Aat	0	
DPYSL4	10570		GRCh37	10	134014007	134014007	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_044																					ENST00000338492.4:c.959T>G	p.Leu320Trp	p.L320W	ENST00000338492	NM_006426.2	320	tTg/tGg	0	
OR5W2	390148		GRCh37	11	55681488	55681488	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_044																					ENST00000344514.1:c.571G>A	p.Asp191Asn	p.D191N	ENST00000344514	NM_001001960.1	191	Gat/Aat	0	
MARK2	2011		GRCh37	11	63662640	63662640	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_044																					ENST00000402010.2:c.64G>C	p.Gly22Arg	p.G22R	ENST00000402010	NM_001039469.2	22	Gga/Cga	0	
KMT2D	8085		GRCh37	12	49420519	49420519	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_044																					ENST00000301067.7:c.15230T>C	p.Leu5077Pro	p.L5077P	ENST00000301067	NM_003482.3	5077	cTg/cCg	0	
ESPL1	9700		GRCh37	12	53670938	53670938	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_044																					ENST00000257934.4:c.2012A>T	p.Asp671Val	p.D671V	ENST00000257934	NM_012291.4	671	gAt/gTt	0	
ZFC3H1	196441		GRCh37	12	72008657	72008657	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_044																					ENST00000378743.3:c.5317G>T	p.Gly1773Trp	p.G1773W	ENST00000378743	NM_144982.4	1773	Ggg/Tgg	0	
ANKS1B	56899		GRCh37	12	99223064	99223064	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_044																					ENST00000547776.2:c.2954G>C	p.Gly985Ala	p.G985A	ENST00000547776	NM_152788.4	985	gGt/gCt	0	
POSTN	10631		GRCh37	13	38158895	38158895	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_044																					ENST00000379747.4:c.1066G>T	p.Gly356Cys	p.G356C	ENST00000379747	NM_006475.2	356	Ggt/Tgt	0	
ACOT6	641372		GRCh37	14	74086009	74086009	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_044																					ENST00000381139.1:c.90C>G	p.Phe30Leu	p.F30L	ENST00000381139	NM_001037162.1	30	ttC/ttG	0	
RPS6KA5	9252		GRCh37	14	91369171	91369171	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_044																					ENST00000261991.3:c.1100G>T	p.Ser367Ile	p.S367I	ENST00000261991	NM_004755.2	367	aGt/aTt	0	
DYNC1H1	1778		GRCh37	14	102483810	102483810	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_044																					ENST00000360184.4:c.8146A>G	p.Thr2716Ala	p.T2716A	ENST00000360184	NM_001376.4	2716	Aca/Gca	0	
ALDH1A2	8854		GRCh37	15	58256153	58256153	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_044																					ENST00000249750.4:c.1016G>C	p.Arg339Thr	p.R339T	ENST00000249750	NM_003888.3	339	aGa/aCa	0	
FBXL19	54620		GRCh37	16	30937238	30937238	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_044																					ENST00000380310.2:c.223C>T	p.Arg75Trp	p.R75W	ENST00000380310	NM_001099784.2	75	Cgg/Tgg	0	
CALB2	794		GRCh37	16	71417277	71417277	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_044																					ENST00000302628.4:c.407T>A	p.Leu136Gln	p.L136Q	ENST00000302628	NM_001740.4	136	cTg/cAg	0	
AP1G1	164		GRCh37	16	71798623	71798623	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_044																					ENST00000299980.4:c.745A>G	p.Ile249Val	p.I249V	ENST00000299980	NM_001128.5	249	Att/Gtt	0	
NUDT7	283927		GRCh37	16	77769772	77769772	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_044																					ENST00000268533.5:c.237C>A	p.Asp79Glu	p.D79E	ENST00000268533	NM_001105663.2	79	gaC/gaA	0	
TP53	7157		GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_044																					ENST00000269305.4:c.398T>G	p.Met133Arg	p.M133R	ENST00000269305	NM_001126112.2	133	aTg/aGg	0	
SEZ6	124925		GRCh37	17	27285011	27285011	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_044																					ENST00000317338.12:c.2256C>A	p.Cys752Ter	p.C752*	ENST00000317338		752	tgC/tgA	0	
SOGA2			GRCh37	18	8807050	8807050	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_044																					ENST00000306329.11:c.3553C>A	p.Leu1185Met	p.L1185M	ENST00000306329		1185	Ctg/Atg	0	
RBBP8	5932		GRCh37	18	20516833	20516833	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_044																					ENST00000327155.5:c.19A>C	p.Ser7Arg	p.S7R	ENST00000327155	NM_002894.2	7	Agc/Cgc	0	
TBXA2R	6915		GRCh37	19	3600020	3600020	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_044																					ENST00000375190.4:c.613G>A	p.Gly205Ser	p.G205S	ENST00000375190	NM_001060.5	205	Ggc/Agc	0	
CCDC94			GRCh37	19	4267743	4267743	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_044																					ENST00000262962.7:c.831C>G	p.Asn277Lys	p.N277K	ENST00000262962	NM_018074.4	277	aaC/aaG	0	
RFX2	5990		GRCh37	19	6001913	6001913	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_044																					ENST00000303657.5:c.1772T>C	p.Val591Ala	p.V591A	ENST00000303657	NM_000635.3	591	gTg/gCg	0	
CACNA1A	773		GRCh37	19	13318236	13318236	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_044																					ENST00000360228.5:c.7412G>T	p.Arg2471Leu	p.R2471L	ENST00000360228	NM_001127222.1	2471	cGa/cTa	0	
ZNF181	339318		GRCh37	19	35231525	35231525	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_044																					ENST00000492450.1:c.239C>G	p.Ser80Ter	p.S80*	ENST00000492450		80	tCa/tGa	0	
LILRB5	10990		GRCh37	19	54759434	54759434	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_044																					ENST00000449561.2:c.667A>G	p.Lys223Glu	p.K223E	ENST00000449561		223	Aag/Gag	0	
PROCR	10544		GRCh37	20	33762671	33762671	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_044																					ENST00000216968.4:c.237G>T	p.Trp79Cys	p.W79C	ENST00000216968	NM_006404.4	79	tgG/tgT	0	
ZNF217	7764		GRCh37	20	52193304	52193304	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_044																					ENST00000302342.3:c.1999C>G	p.Gln667Glu	p.Q667E	ENST00000302342	NM_006526.2	667	Caa/Gaa	0	
PKDREJ	10343		GRCh37	22	46653780	46653780	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_044																					ENST00000253255.5:c.5440C>G	p.Gln1814Glu	p.Q1814E	ENST00000253255	NM_006071.1	1814	Caa/Gaa	0	
CXorf22			GRCh37	X	36007526	36007526	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_044																					ENST00000297866.5:c.2804T>G	p.Val935Gly	p.V935G	ENST00000297866	NM_152632.3	935	gTc/gGc	0	
JADE3	9767		GRCh37	X	46913763	46913763	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_044																					ENST00000218343.4:c.1176A>C	p.Lys392Asn	p.K392N	ENST00000218343	NM_014735.3	392	aaA/aaC	0	
GRIPAP1	56850		GRCh37	X	48839713	48839713	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_044																					ENST00000376423.4:c.1253G>A	p.Arg418His	p.R418H	ENST00000376423	NM_207672.1	418	cGt/cAt	0	
ITIH6	347365		GRCh37	X	54777595	54777595	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_044																					ENST00000218436.6:c.3571G>A	p.Val1191Met	p.V1191M	ENST00000218436	NM_198510.2	1191	Gtg/Atg	0	
NAP1L3	4675		GRCh37	X	92926808	92926808	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_044																					ENST00000373079.3:c.1496A>G	p.Tyr499Cys	p.Y499C	ENST00000373079	NM_004538.5	499	tAt/tGt	0	
GPRASP1	9737		GRCh37	X	101911194	101911194	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_044																					ENST00000361600.5:c.2353G>A	p.Ala785Thr	p.A785T	ENST00000361600	NM_014710.4	785	Gct/Act	0	
DOCK11	139818		GRCh37	X	117731474	117731474	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_044																					ENST00000276202.7:c.2344C>T	p.Pro782Ser	p.P782S	ENST00000276202	NM_144658.3	782	Ccc/Tcc	0	
DCAF12L1	139170		GRCh37	X	125686317	125686317	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_044																					ENST00000371126.1:c.275T>G	p.Leu92Arg	p.L92R	ENST00000371126	NM_178470.4	92	cTg/cGg	0	
RENBP	5973		GRCh37	X	153200851	153200851	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_044																					ENST00000393700.3:c.1172T>C	p.Phe391Ser	p.F391S	ENST00000393700	NM_002910.5	391	tTc/tCc	0	
SPOCD1	90853		GRCh37	1	32279706	32279706	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000360482.2:c.1229C>T	p.Ser410Leu	p.S410L	ENST00000360482	NM_144569.4	410	tCa/tTa	0	
TMEM59	9528		GRCh37	1	54513020	54513020	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000234831.5:c.215G>A	p.Arg72Lys	p.R72K	ENST00000234831	NM_004872.3	72	aGa/aAa	0	
ELTD1			GRCh37	1	79403598	79403598	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000370742.3:c.654G>C	p.Arg218Ser	p.R218S	ENST00000370742	NM_022159.3	218	agG/agC	0	
DBT	1629		GRCh37	1	100701047	100701047	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000370132.4:c.196C>T	p.Gln66Ter	p.Q66*	ENST00000370132	NM_001918.3	66	Cag/Tag	0	
PTPN22	26191		GRCh37	1	114380599	114380599	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000359785.5:c.1423C>T	p.Gln475Ter	p.Q475*	ENST00000359785	NM_015967.5	475	Caa/Taa	0	
TXNIP	10628		GRCh37	1	145440667	145440667	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000369317.4:c.867C>G	p.Ile289Met	p.I289M	ENST00000369317	NM_006472.4	289	atC/atG	0	
SPRR1A	6698		GRCh37	1	152957755	152957755	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000368762.1:c.49C>T	p.Gln17Ter	p.Q17*	ENST00000368762		17	Cag/Tag	0	
TNN	63923		GRCh37	1	175116123	175116123	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_112																					ENST00000239462.4:c.3816G>C	p.Leu1272Phe	p.L1272F	ENST00000239462	NM_022093.1	1272	ttG/ttC	0	
KIF21B	23046		GRCh37	1	200972874	200972874	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_112																					ENST00000422435.2:c.1052A>T	p.Asp351Val	p.D351V	ENST00000422435	NM_001252100.1	351	gAc/gTc	0	
PIK3C2B	5287		GRCh37	1	204434411	204434411	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000367187.3:c.970G>C	p.Glu324Gln	p.E324Q	ENST00000367187	NM_002646.3	324	Gag/Cag	0	
FAM98A	25940		GRCh37	2	33812331	33812331	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000238823.8:c.579G>C	p.Lys193Asn	p.K193N	ENST00000238823		193	aaG/aaC	0	
CRIM1	51232		GRCh37	2	36583571	36583571	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_112																					ENST00000280527.2:c.136G>C	p.Glu46Gln	p.E46Q	ENST00000280527	NM_016441.2	46	Gag/Cag	0	
AAK1	22848		GRCh37	2	69870147	69870147	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000409085.4:c.26G>A	p.Arg9Gln	p.R9Q	ENST00000409085	NM_014911.3	9	cGa/cAa	0	
MRPL19	9801		GRCh37	2	75881894	75881894	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000393909.2:c.508C>T	p.Arg170Trp	p.R170W	ENST00000393909	NM_014763.3	170	Cgg/Tgg	0	
ACTR1B	10120		GRCh37	2	98273966	98273966	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000289228.5:c.932G>C	p.Gly311Ala	p.G311A	ENST00000289228	NM_005735.3	311	gGa/gCa	0	
MBD5	55777		GRCh37	2	149216352	149216352	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000407073.1:c.25G>A	p.Gly9Arg	p.G9R	ENST00000407073	NM_018328.4	9	Gga/Aga	0	
RPRM	56475		GRCh37	2	154334934	154334934	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000325926.3:c.146G>A	p.Arg49His	p.R49H	ENST00000325926	NM_019845.2	49	cGt/cAt	0	
SLC4A3	6508		GRCh37	2	220498022	220498022	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_112																					ENST00000317151.3:c.1304G>T	p.Gly435Val	p.G435V	ENST00000317151		435	gGc/gTc	0	
RBM44	375316		GRCh37	2	238726445	238726445	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000316997.4:c.886G>A	p.Asp296Asn	p.D296N	ENST00000316997	NM_001080504.2	296	Gat/Aat	0	
KIF1A	547		GRCh37	2	241685188	241685188	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000320389.7:c.3038C>T	p.Ser1013Phe	p.S1013F	ENST00000320389	NM_004321.6	1013	tCt/tTt	0	
NUP210	23225		GRCh37	3	13381476	13381476	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000254508.5:c.3349G>C	p.Glu1117Gln	p.E1117Q	ENST00000254508	NM_024923.3	1117	Gag/Cag	0	
STT3B	201595		GRCh37	3	31661294	31661294	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000295770.2:c.1299C>G	p.Ile433Met	p.I433M	ENST00000295770	NM_178862.1	433	atC/atG	0	
DNAH1	25981		GRCh37	3	52429649	52429649	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_112																					ENST00000420323.2:c.11214G>T	p.Trp3738Cys	p.W3738C	ENST00000420323	NM_015512.4	3738	tgG/tgT	0	
CACNA2D3	55799		GRCh37	3	55003852	55003852	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000288197.5:c.2537C>T	p.Ser846Phe	p.S846F	ENST00000288197		846	tCc/tTc	0	
CRYBG3	131544		GRCh37	3	97591449	97591449	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000419587.2:c.1411G>A	p.Glu471Lys	p.E471K	ENST00000419587		471	Gag/Aag	0	
EEFSEC	60678		GRCh37	3	127872576	127872576	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000254730.6:c.226G>A	p.Glu76Lys	p.E76K	ENST00000254730	NM_021937.3	76	Gag/Aag	0	
XRN1	54464		GRCh37	3	142075879	142075879	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000264951.4:c.3547C>T	p.Gln1183Ter	p.Q1183*	ENST00000264951	NM_019001.3	1183	Cag/Tag	0	
SLITRK3	22865		GRCh37	3	164905902	164905902	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_112																					ENST00000241274.3:c.2717C>G	p.Thr906Arg	p.T906R	ENST00000241274	NM_014926.2	906	aCa/aGa	0	
NAT8L	339983		GRCh37	4	2065595	2065595	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000423729.2:c.650C>T	p.Ser217Leu	p.S217L	ENST00000423729	NM_178557.3	217	tCa/tTa	0	
ATP10D	57205		GRCh37	4	47560032	47560032	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000273859.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000273859	NM_020453.3	726	Gag/Aag	0	
FRYL	285527		GRCh37	4	48575217	48575217	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000358350.4:c.2890G>C	p.Glu964Gln	p.E964Q	ENST00000358350	NM_015030.1	964	Gaa/Caa	0	
MUC7	4589		GRCh37	4	71347171	71347171	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000304887.5:c.710C>T	p.Ala237Val	p.A237V	ENST00000304887	NM_152291.2	237	gCc/gTc	0	
ANTXR2	118429		GRCh37	4	80957143	80957143	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_112																					ENST00000307333.7:c.680C>G	p.Ser227Ter	p.S227*	ENST00000307333	NM_001145794.1	227	tCa/tGa	0	
FAM13A	10144		GRCh37	4	89653257	89653257	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_112																					ENST00000264344.5:c.2739C>A	p.Asp913Glu	p.D913E	ENST00000264344	NM_014883.3	913	gaC/gaA	0	
VCAN	1462		GRCh37	5	82836794	82836794	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000265077.3:c.7972G>A	p.Glu2658Lys	p.E2658K	ENST00000265077	NM_004385.4	2658	Gaa/Aaa	0	
PAM	5066		GRCh37	5	102262307	102262307	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_112																					ENST00000438793.3:c.461G>C	p.Gly154Ala	p.G154A	ENST00000438793	NM_001177306.1	154	gGa/gCa	0	
MCC	4163		GRCh37	5	112399726	112399726	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000302475.4:c.1598G>A	p.Cys533Tyr	p.C533Y	ENST00000302475	NM_002387.2	533	tGc/tAc	0	
PCDHGA3	56112		GRCh37	5	140725504	140725504	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000253812.6:c.1904G>A	p.Arg635Lys	p.R635K	ENST00000253812	NM_018916.3	635	aGa/aAa	0	
DOCK2	1794		GRCh37	5	169477302	169477302	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_112																					ENST00000256935.8:c.4114G>C	p.Glu1372Gln	p.E1372Q	ENST00000256935	NM_004946.2	1372	Gaa/Caa	0	
TUBB2A	7280		GRCh37	6	3154768	3154768	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000333628.3:c.667G>A	p.Gly223Arg	p.G223R	ENST00000333628	NM_001069.2	223	Ggg/Agg	0	
HIST1H3B	8358		GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000244661.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000244661	NM_003537.3	74	Gaa/Caa	0	
C6orf10			GRCh37	6	32260988	32260988	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_112																					ENST00000447241.2:c.1462G>T	p.Glu488Ter	p.E488*	ENST00000447241	NM_006781.3	488	Gaa/Taa	0	
USP49	25862		GRCh37	6	41774070	41774070	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000373009.3:c.652G>A	p.Asp218Asn	p.D218N	ENST00000373009		218	Gac/Aac	0	
COL12A1	1303		GRCh37	6	75797328	75797328	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000322507.8:c.9146G>A	p.Cys3049Tyr	p.C3049Y	ENST00000322507	NM_004370.5	3049	tGt/tAt	0	
MDN1	23195		GRCh37	6	90368478	90368478	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_112																					ENST00000369393.3:c.14872G>T	p.Asp4958Tyr	p.D4958Y	ENST00000369393		4958	Gac/Tac	0	
GRIK2	2898		GRCh37	6	102074500	102074500	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000421544.1:c.529G>A	p.Asp177Asn	p.D177N	ENST00000421544	NM_021956.4	177	Gat/Aat	0	
AK9	221264		GRCh37	6	109835601	109835601	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000424296.2:c.4105G>A	p.Glu1369Lys	p.E1369K	ENST00000424296	NM_001145128.2	1369	Gag/Aag	0	
RPF2	84154		GRCh37	6	111346611	111346611	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_112																					ENST00000441448.2:c.747G>C	p.Lys249Asn	p.K249N	ENST00000441448	NM_032194.1	249	aaG/aaC	0	
IFNGR1	3459		GRCh37	6	137527362	137527362	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000367739.4:c.284C>T	p.Ser95Leu	p.S95L	ENST00000367739	NM_000416.2	95	tCa/tTa	0	
AIG1	51390		GRCh37	6	143486296	143486296	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000275235.4:c.375C>G	p.Ile125Met	p.I125M	ENST00000275235		125	atC/atG	0	
SYNE1	23345		GRCh37	6	152469222	152469222	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_112																					ENST00000367255.5:c.24934G>T	p.Asp8312Tyr	p.D8312Y	ENST00000367255	NM_182961.3	8312	Gat/Tat	0	
PRKAR1B	5575		GRCh37	7	624182	624182	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000360274.4:c.732G>C	p.Lys244Asn	p.K244N	ENST00000360274	NM_002735.2	244	aaG/aaC	0	
RADIL	55698		GRCh37	7	4874833	4874833	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000399583.3:c.821C>T	p.Thr274Met	p.T274M	ENST00000399583	NM_018059.4	274	aCg/aTg	0	
ASL	435		GRCh37	7	65551790	65551790	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_112																					ENST00000304874.9:c.584A>T	p.Asn195Ile	p.N195I	ENST00000304874	NM_000048.3	195	aAt/aTt	0	
ZCWPW1	55063		GRCh37	7	99998741	99998741	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000398027.2:c.1843G>C	p.Glu615Gln	p.E615Q	ENST00000398027	NM_017984.4	615	Gag/Cag	0	
METTL2B	55798		GRCh37	7	128141866	128141866	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000262432.8:c.1033C>G	p.Leu345Val	p.L345V	ENST00000262432	NM_018396.2	345	Ctg/Gtg	0	
GFRA2	2675		GRCh37	8	21640274	21640274	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_112																					ENST00000517328.1:c.178C>G	p.Leu60Val	p.L60V	ENST00000517328		60	Ctg/Gtg	0	
SLC26A7	115111		GRCh37	8	92307815	92307815	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000276609.3:c.361C>G	p.Gln121Glu	p.Q121E	ENST00000276609	NM_052832.2	121	Cag/Gag	0	
PKHD1L1	93035		GRCh37	8	110520013	110520013	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_112																					ENST00000378402.5:c.11116G>C	p.Glu3706Gln	p.E3706Q	ENST00000378402	NM_177531.4	3706	Gaa/Caa	0	
EXT1	2131		GRCh37	8	118811952	118811952	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000378204.2:c.2240G>C	p.Ter747SerextTer41	p.*747Sext*41	ENST00000378204	NM_000127.2	747	tGa/tCa	0	
ZHX1	11244		GRCh37	8	124267592	124267592	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000297857.2:c.595C>T	p.His199Tyr	p.H199Y	ENST00000297857		199	Cat/Tat	0	
TONSL	4796		GRCh37	8	145660253	145660253	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000409379.3:c.3026C>T	p.Ser1009Leu	p.S1009L	ENST00000409379	NM_013432.4	1009	tCg/tTg	0	
GLDC	2731		GRCh37	9	6595073	6595073	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000321612.6:c.1202C>T	p.Ser401Phe	p.S401F	ENST00000321612	NM_000170.2	401	tCc/tTc	0	
ZCCHC6			GRCh37	9	88938338	88938338	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000375963.3:c.2327G>C	p.Gly776Ala	p.G776A	ENST00000375963	NM_001185059.1	776	gGc/gCc	0	
CUBN	8029		GRCh37	10	16941159	16941159	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000377833.4:c.8434G>C	p.Asp2812His	p.D2812H	ENST00000377833	NM_001081.3	2812	Gat/Cat	0	
ANKRD26	22852		GRCh37	10	27368085	27368085	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_112																					ENST00000376087.4:c.746C>G	p.Ser249Cys	p.S249C	ENST00000376087	NM_014915.2	249	tCt/tGt	0	
FAM13C	220965		GRCh37	10	61029684	61029684	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_112																					ENST00000373868.2:c.778C>G	p.Pro260Ala	p.P260A	ENST00000373868	NM_198215.3	260	Cca/Gca	0	
LRRTM3	347731		GRCh37	10	68687089	68687089	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_112																					ENST00000361320.4:c.415G>T	p.Asp139Tyr	p.D139Y	ENST00000361320	NM_178011.3	139	Gat/Tat	0	
SLK	9748		GRCh37	10	105765770	105765770	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000369755.3:c.2581C>T	p.Arg861Trp	p.R861W	ENST00000369755	NM_014720.2	861	Cgg/Tgg	0	
B4GALNT4	338707		GRCh37	11	377203	377203	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000329962.6:c.2080G>A	p.Glu694Lys	p.E694K	ENST00000329962	NM_178537.4	694	Gag/Aag	0	
TALDO1	6888		GRCh37	11	763378	763378	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_112																					ENST00000319006.3:c.496A>G	p.Met166Val	p.M166V	ENST00000319006		166	Atg/Gtg	0	
MUC6	4588		GRCh37	11	1016404	1016404	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_112																					ENST00000421673.2:c.6397C>G	p.Pro2133Ala	p.P2133A	ENST00000421673	NM_005961.2	2133	Ccc/Gcc	0	
SMPD1	6609		GRCh37	11	6415508	6415508	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000342245.4:c.1567C>G	p.Leu523Val	p.L523V	ENST00000342245	NM_001007593.2	523	Ctg/Gtg	0	
TRIM3	10612		GRCh37	11	6471819	6471819	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000345851.3:c.1903G>A	p.Glu635Lys	p.E635K	ENST00000345851	NM_033278.3	635	Gaa/Aaa	0	
SLC17A6	57084		GRCh37	11	22363242	22363242	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_112																					ENST00000263160.3:c.255C>A	p.Phe85Leu	p.F85L	ENST00000263160	NM_020346.2	85	ttC/ttA	0	
RAG2	5897		GRCh37	11	36614491	36614491	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000311485.3:c.1228G>C	p.Glu410Gln	p.E410Q	ENST00000311485	NM_000536.3	410	Gag/Cag	0	
NR1H3	10062		GRCh37	11	47289567	47289567	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000441012.2:c.1092C>G	p.Ile364Met	p.I364M	ENST00000441012	NM_005693.3	364	atC/atG	0	
MADD	8567		GRCh37	11	47304032	47304032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000311027.5:c.1570C>T	p.Gln524Ter	p.Q524*	ENST00000311027	NM_003682.3	524	Caa/Taa	0	
MS4A2	2206		GRCh37	11	59856269	59856269	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000278888.3:c.31C>G	p.Leu11Val	p.L11V	ENST00000278888	NM_000139.4	11	Ctt/Gtt	0	
TAF6L	10629		GRCh37	11	62554674	62554674	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000294168.3:c.1775C>T	p.Ser592Leu	p.S592L	ENST00000294168	NM_006473.3	592	tCg/tTg	0	
AP5B1	91056		GRCh37	11	65547560	65547560	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_112																					ENST00000532090.2:c.404G>T	p.Arg135Leu	p.R135L	ENST00000532090	NM_138368.4	135	cGa/cTa	0	
PPME1	51400		GRCh37	11	73936252	73936252	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000328257.8:c.349G>A	p.Glu117Lys	p.E117K	ENST00000328257	NM_016147.2	117	Gaa/Aaa	0	
FAT3	120114		GRCh37	11	92088481	92088481	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_112																					ENST00000298047.6:c.3203G>T	p.Arg1068Leu	p.R1068L	ENST00000298047		1068	cGa/cTa	0	
CASP1	834		GRCh37	11	104899887	104899887	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000436863.3:c.970G>C	p.Glu324Gln	p.E324Q	ENST00000436863	NM_033292.3	324	Gag/Cag	0	
GUCY1A2	2977		GRCh37	11	106810513	106810513	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_112																					ENST00000526355.2:c.879C>G	p.Ile293Met	p.I293M	ENST00000526355	NM_000855.2	293	atC/atG	0	
ALG9	79796		GRCh37	11	111709076	111709076	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000531154.1:c.707G>A	p.Arg236Gln	p.R236Q	ENST00000531154	NM_024740.2	236	cGa/cAa	0	
NXPE2	120406		GRCh37	11	114577134	114577134	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000389586.4:c.1162C>G	p.His388Asp	p.H388D	ENST00000389586	NM_182495.5	388	Cat/Gat	0	
OR10G9	219870		GRCh37	11	123894431	123894431	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_112																					ENST00000375024.1:c.712C>A	p.Gln238Lys	p.Q238K	ENST00000375024	NM_001001953.1	238	Cag/Aag	0	
SLC37A2	219855		GRCh37	11	124950548	124950548	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000403796.2:c.566C>G	p.Ser189Cys	p.S189C	ENST00000403796	NM_001145290.1	189	tCt/tGt	0	
ETS1	2113		GRCh37	11	128355990	128355990	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000319397.6:c.455C>T	p.Ser152Phe	p.S152F	ENST00000319397	NM_005238.3	152	tCc/tTc	0	
TM7SF3	51768		GRCh37	12	27135787	27135787	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000343028.4:c.874G>C	p.Val292Leu	p.V292L	ENST00000343028	NM_016551.2	292	Gtg/Ctg	0	
BLOC1S1	2647		GRCh37	12	56109855	56109855	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000548925.1:c.20G>A	p.Gly7Asp	p.G7D	ENST00000548925		7	gGt/gAt	0	
KDM2B	84678		GRCh37	12	122016782	122016782	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000377071.4:c.196C>T	p.Arg66Cys	p.R66C	ENST00000377071	NM_032590.4	66	Cgc/Tgc	0	
ZMYM2	7750		GRCh37	13	20635256	20635256	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000382871.2:c.2803G>A	p.Glu935Lys	p.E935K	ENST00000382871		935	Gag/Aag	0	
PCDH9	5101		GRCh37	13	67799564	67799564	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000377865.2:c.3009G>C	p.Lys1003Asn	p.K1003N	ENST00000377865		1003	aaG/aaC	0	
DCT	1638		GRCh37	13	95118029	95118029	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_112																					ENST00000377028.5:c.721G>T	p.Ala241Ser	p.A241S	ENST00000377028	NM_001922.3	241	Gct/Tct	0	
CEP128	145508		GRCh37	14	80963878	80963878	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000281129.3:c.3229G>C	p.Asp1077His	p.D1077H	ENST00000281129	NM_152446.3	1077	Gat/Cat	0	
BCL11B	64919		GRCh37	14	99640879	99640879	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000357195.3:c.2294C>T	p.Ser765Leu	p.S765L	ENST00000357195	NM_138576.2	765	tCg/tTg	0	
TMEM179	388021		GRCh37	14	105070880	105070880	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000556573.1:c.199C>T	p.Pro67Ser	p.P67S	ENST00000556573	NM_001286389.1	67	Ccg/Tcg	0	
NPAP1	23742		GRCh37	15	24922658	24922658	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000329468.2:c.1644G>A	p.Met548Ile	p.M548I	ENST00000329468	NM_018958.2	548	atG/atA	0	
APBA2	321		GRCh37	15	29346421	29346421	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_112																					ENST00000558259.1:c.334G>C	p.Glu112Gln	p.E112Q	ENST00000558259	NM_005503.3	112	Gag/Cag	0	
MAPK8IP3	23162		GRCh37	16	1818363	1818363	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000250894.4:c.3723C>G	p.Phe1241Leu	p.F1241L	ENST00000250894	NM_015133.3	1241	ttC/ttG	0	
ZNF205	7755		GRCh37	16	3165362	3165362	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000219091.4:c.64G>A	p.Asp22Asn	p.D22N	ENST00000219091	NM_001042428.1	22	Gat/Aat	0	
KIF22	3835		GRCh37	16	29810724	29810724	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000160827.4:c.899C>T	p.Ser300Phe	p.S300F	ENST00000160827	NM_001256269.1	300	tCc/tTc	0	
PLEKHH3	79990		GRCh37	17	40822638	40822638	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000591022.1:c.1507G>A	p.Glu503Lys	p.E503K	ENST00000591022	NM_024927.4	503	Gag/Aag	0	
LUC7L3	51747		GRCh37	17	48824042	48824042	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_112																					ENST00000240304.1:c.1117G>C	p.Asp373His	p.D373H	ENST00000240304	NM_006107.3	373	Gat/Cat	0	
HEATR6	63897		GRCh37	17	58121072	58121072	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000184956.6:c.3398G>C	p.Arg1133Thr	p.R1133T	ENST00000184956	NM_022070.4	1133	aGa/aCa	0	
TBX4	9496		GRCh37	17	59560429	59560429	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000240335.1:c.1190C>T	p.Ser397Leu	p.S397L	ENST00000240335	NM_018488.2	397	tCa/tTa	0	
CCDC47	57003		GRCh37	17	61838300	61838300	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_112																					ENST00000225726.5:c.709A>T	p.Met237Leu	p.M237L	ENST00000225726	NM_020198.2	237	Atg/Ttg	0	
NUP85	79902		GRCh37	17	73228008	73228008	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000245544.4:c.1330C>G	p.Leu444Val	p.L444V	ENST00000245544	NM_024844.3	444	Ctg/Gtg	0	
GPS1	2873		GRCh37	17	80012828	80012828	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000306823.6:c.676G>A	p.Glu226Lys	p.E226K	ENST00000306823		226	Gag/Aag	0	
TCF3	6929		GRCh37	19	1615473	1615473	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000262965.5:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000262965	NM_003200.3	545	Gag/Aag	0	
TCF3	6929		GRCh37	19	1615768	1615768	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000262965.5:c.1503G>C	p.Glu501Asp	p.E501D	ENST00000262965	NM_003200.3	501	gaG/gaC	0	
SGTA	6449		GRCh37	19	2765263	2765263	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000221566.2:c.313G>A	p.Glu105Lys	p.E105K	ENST00000221566	NM_003021.3	105	Gaa/Aaa	0	
AC016586.1			GRCh37	19	4042177	4042177	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000535853.1:c.320C>T	p.Ser107Leu	p.S107L	ENST00000535853		107	tCa/tTa	0	
SLC1A6	6511		GRCh37	19	15083677	15083677	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000221742.3:c.46C>T	p.Arg16Trp	p.R16W	ENST00000221742	NM_005071.2	16	Cgg/Tgg	0	
WDR87	83889		GRCh37	19	38378833	38378833	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_112																					ENST00000303868.5:c.5361C>G	p.His1787Gln	p.H1787Q	ENST00000303868	NM_031951.3	1787	caC/caG	0	
SMG9	56006		GRCh37	19	44238554	44238554	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_112																					ENST00000270066.6:c.1089C>G	p.Tyr363Ter	p.Y363*	ENST00000270066	NM_019108.2	363	taC/taG	0	
EHD2	30846		GRCh37	19	48229369	48229369	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000263277.3:c.803G>A	p.Arg268Gln	p.R268Q	ENST00000263277	NM_014601.3	268	cGg/cAg	0	
CLDND2	125875		GRCh37	19	51871768	51871768	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_112																					ENST00000291715.1:c.64A>T	p.Met22Leu	p.M22L	ENST00000291715	NM_152353.2	22	Atg/Ttg	0	
ZNF600	162966		GRCh37	19	53270632	53270632	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000338230.3:c.377G>C	p.Arg126Thr	p.R126T	ENST00000338230	NM_198457.2	126	aGa/aCa	0	
FAM83C	128876		GRCh37	20	33879746	33879746	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000374408.3:c.362C>T	p.Ser121Phe	p.S121F	ENST00000374408	NM_178468.5	121	tCt/tTt	0	
ARFGEF2	10564		GRCh37	20	47607610	47607610	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000371917.4:c.2848C>T	p.Arg950Cys	p.R950C	ENST00000371917	NM_006420.2	950	Cgc/Tgc	0	
FAM65C			GRCh37	20	49204375	49204375	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000045083.2:c.2704G>C	p.Val902Leu	p.V902L	ENST00000045083	NM_080829.2	902	Gtg/Ctg	0	
AIFM3	150209		GRCh37	22	21322248	21322248	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_112																					ENST00000399167.2:c.16T>C	p.Ser6Pro	p.S6P	ENST00000399167	NM_144704.2	6	Tcc/Ccc	0	
PRR14L	253143		GRCh37	22	32111262	32111262	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000327423.6:c.2563G>A	p.Glu855Lys	p.E855K	ENST00000327423	NM_173566.2	855	Gaa/Aaa	0	
BPIFC	254240		GRCh37	22	32815392	32815392	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000300399.3:c.1218-1G>A		p.X406_splice	ENST00000300399	NM_174932.2	406		0	
IL2RB	3560		GRCh37	22	37535261	37535261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000216223.5:c.284C>T	p.Ser95Phe	p.S95F	ENST00000216223	NM_000878.3	95	tCt/tTt	0	
TOB2	10766		GRCh37	22	41832777	41832777	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000327492.3:c.573G>A	p.Met191Ile	p.M191I	ENST00000327492	NM_016272.3	191	atG/atA	0	
MOV10L1	54456		GRCh37	22	50589280	50589280	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_112																					ENST00000262794.5:c.2844G>C	p.Gln948His	p.Q948H	ENST00000262794	NM_018995.2	948	caG/caC	0	
SCML1	6322		GRCh37	X	17768324	17768324	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000380041.3:c.614C>G	p.Ser205Cys	p.S205C	ENST00000380041	NM_001037540.1	205	tCt/tGt	0	
POLA1	5422		GRCh37	X	24753594	24753594	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000379059.3:c.1894G>A	p.Asp632Asn	p.D632N	ENST00000379059	NM_016937.3	632	Gat/Aat	0	
DMD	1756		GRCh37	X	31747775	31747775	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000357033.4:c.7633G>A	p.Glu2545Lys	p.E2545K	ENST00000357033	NM_004007.2	2545	Gag/Aag	0	
SLC35A2	7355		GRCh37	X	48763694	48763694	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_112																					ENST00000247138.5:c.401C>G	p.Ser134Cys	p.S134C	ENST00000247138	NM_005660.1	134	tCt/tGt	0	
CLCN5	1184		GRCh37	X	49807030	49807030	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000376088.3:c.122C>T	p.Ser41Phe	p.S41F	ENST00000376088	NM_001127899.2	41	tCc/tTc	0	
USP51	158880		GRCh37	X	55514019	55514019	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000500968.3:c.1354G>C	p.Glu452Gln	p.E452Q	ENST00000500968	NM_201286.3	452	Gag/Cag	0	
TAF1	6872		GRCh37	X	70643836	70643836	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_112																					ENST00000373790.4:c.4585C>T	p.His1529Tyr	p.H1529Y	ENST00000373790	NM_004606.3	1529	Cat/Tat	0	
CHRDL1	91851		GRCh37	X	109919518	109919518	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_112																					ENST00000372045.1:c.1294G>C	p.Glu432Gln	p.E432Q	ENST00000372045		432	Gag/Cag	0	
NKAP	79576		GRCh37	X	119077438	119077438	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_112																					ENST00000371410.3:c.131C>T	p.Ser44Leu	p.S44L	ENST00000371410	NM_024528.3	44	tCg/tTg	0	
CCDC150	284992		GRCh37	2	197521460	197521460	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR259																					ENST00000389175.4:c.280T>C	p.Trp94Arg	p.W94R	ENST00000389175	NM_001080539.1	94	Tgg/Cgg	0	
PIK3CA	5290		GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR259																					ENST00000263967.3:c.3132T>G	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaG	0	
HMGCR	3156		GRCh37	5	74646675	74646675	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR259																					ENST00000287936.4:c.842A>G	p.Asn281Ser	p.N281S	ENST00000287936	NM_000859.2	281	aAc/aGc	0	
GRK6	2870		GRCh37	5	176863502	176863502	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR259																					ENST00000355472.5:c.1375G>A	p.Gly459Ser	p.G459S	ENST00000355472	NM_002082.3	459	Ggc/Agc	0	
EYS	346007		GRCh37	6	64487960	64487960	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR259																					ENST00000370616.2:c.7837C>T	p.Pro2613Ser	p.P2613S	ENST00000370616		2613	Ccc/Tcc	0	
BRINP1	1620		GRCh37	9	121976431	121976431	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR259																					ENST00000265922.3:c.688C>T	p.Leu230Phe	p.L230F	ENST00000265922	NM_014618.2	230	Ctt/Ttt	0	
A2M	2		GRCh37	12	9231895	9231895	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR259																					ENST00000318602.7:c.3064G>A	p.Asp1022Asn	p.D1022N	ENST00000318602	NM_000014.4	1022	Gat/Aat	0	
GPC5	2262		GRCh37	13	92408619	92408619	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR259																					ENST00000377067.3:c.1225G>A	p.Glu409Lys	p.E409K	ENST00000377067	NM_004466.4	409	Gaa/Aaa	0	
FOXG1	2290		GRCh37	14	29237174	29237174	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR259																					ENST00000313071.4:c.689G>A	p.Arg230His	p.R230H	ENST00000313071	NM_005249.4	230	cGc/cAc	0	
ETFA	2108		GRCh37	15	76580276	76580276	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR259																					ENST00000557943.1:c.362C>T	p.Pro121Leu	p.P121L	ENST00000557943	NM_000126.3	121	cCc/cTc	0	
NUFIP2	57532		GRCh37	17	27613348	27613348	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR259																					ENST00000225388.4:c.1664G>T	p.Gly555Val	p.G555V	ENST00000225388	NM_020772.2	555	gGa/gTa	0	
TBKBP1	9755		GRCh37	17	45774164	45774164	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR259																					ENST00000361722.3:c.313A>T	p.Ser105Cys	p.S105C	ENST00000361722	NM_014726.2	105	Agc/Tgc	0	
FAM120C	54954		GRCh37	X	54209250	54209250	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR259																					ENST00000375180.2:c.382C>T	p.Arg128Trp	p.R128W	ENST00000375180	NM_017848.4	128	Cgg/Tgg	0	
PARP9	83666		GRCh37	3	122277227	122277227	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR251																					ENST00000360356.2:c.103C>T	p.Pro35Ser	p.P35S	ENST00000360356	NM_001146102.1	35	Cct/Tct	0	
POLR2H	5437		GRCh37	3	184082825	184082825	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR251																					ENST00000456318.1:c.145C>T	p.Pro49Ser	p.P49S	ENST00000456318		49	Cct/Tct	0	
PCDHA1	56147		GRCh37	5	140166068	140166068	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR251																					ENST00000504120.2:c.193C>T	p.Arg65Trp	p.R65W	ENST00000504120	NM_018900.2	65	Cgg/Tgg	0	
GIMAP8	155038		GRCh37	7	150174540	150174540	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR251																					ENST00000307271.3:c.1670C>T	p.Thr557Met	p.T557M	ENST00000307271	NM_175571.2	557	aCg/aTg	0	
UNC5D	137970		GRCh37	8	35579844	35579844	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR251																					ENST00000404895.2:c.1234G>T	p.Val412Leu	p.V412L	ENST00000404895	NM_080872.2	412	Gtg/Ttg	0	
ZNF696	79943		GRCh37	8	144378752	144378752	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR251																					ENST00000330143.3:c.907A>T	p.Ser303Cys	p.S303C	ENST00000330143	NM_030895.2	303	Agc/Tgc	0	
HPS5	11234		GRCh37	11	18316615	18316615	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR251																					ENST00000349215.3:c.1736G>T	p.Cys579Phe	p.C579F	ENST00000349215	NM_181507.1	579	tGt/tTt	0	
CCER1	196477		GRCh37	12	91347322	91347322	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR251																					ENST00000358859.2:c.1198A>C	p.Met400Leu	p.M400L	ENST00000358859	NM_152638.2	400	Atg/Ctg	0	
DACT1	51339		GRCh37	14	59112735	59112735	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR251																					ENST00000335867.4:c.1394G>A	p.Arg465Gln	p.R465Q	ENST00000335867		465	cGg/cAg	0	
UBR7	55148		GRCh37	14	93685071	93685071	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR251																					ENST00000013070.6:c.800C>T	p.Ser267Phe	p.S267F	ENST00000013070	NM_175748.3	267	tCt/tTt	0	
NOG	9241		GRCh37	17	54671938	54671938	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR251																					ENST00000332822.4:c.354C>A	p.Ser118Arg	p.S118R	ENST00000332822	NM_005450.4	118	agC/agA	0	
ASXL3	80816		GRCh37	18	31325697	31325697	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR251																					ENST00000269197.5:c.5885C>T	p.Ala1962Val	p.A1962V	ENST00000269197	NM_030632.1	1962	gCc/gTc	0	
MYH9	4627		GRCh37	22	36697608	36697608	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR251																					ENST00000216181.5:c.2603T>C	p.Leu868Pro	p.L868P	ENST00000216181	NM_002473.4	868	cTc/cCc	0	
MKL1			GRCh37	22	40813392	40813392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR251																					ENST00000355630.3:c.2170G>T	p.Glu724Ter	p.E724*	ENST00000355630	NM_020831.3	724	Gaa/Taa	0	
CXorf67	340602		GRCh37	X	51151016	51151016	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR251																					ENST00000342995.2:c.1148G>A	p.Ser383Asn	p.S383N	ENST00000342995		383	aGc/aAc	0	
ZNF185	7739		GRCh37	X	152105007	152105007	+	intron_variant	Intron	SNP	T	T	G			brca_smc_2018_BR251																					ENST00000370268.4:c.1119-1611T>G		p.*373*	ENST00000370268				0	
PAX7	5081		GRCh37	1	18962844	18962844	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR419																					ENST00000420770.2:c.565G>A	p.Asp189Asn	p.D189N	ENST00000420770	NM_001135254.1	189	Gac/Aac	0	
RPS6KA1	6195		GRCh37	1	26887582	26887582	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR419																					ENST00000374168.2:c.1388T>C	p.Leu463Pro	p.L463P	ENST00000374168	NM_002953.3	463	cTt/cCt	0	
VCAM1	7412		GRCh37	1	101194728	101194728	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR419																					ENST00000294728.2:c.994A>T	p.Met332Leu	p.M332L	ENST00000294728	NM_001078.3	332	Atg/Ttg	0	
SLAMF9	89886		GRCh37	1	159922138	159922138	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR419																					ENST00000368093.3:c.578A>T	p.Asp193Val	p.D193V	ENST00000368093	NM_033438.3	193	gAc/gTc	0	
TOR1AIP2	163590		GRCh37	1	179820307	179820307	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR419																					ENST00000367612.3:c.226G>C	p.Ala76Pro	p.A76P	ENST00000367612	NM_145034.4	76	Gca/Cca	0	
OPTC	26254		GRCh37	1	203467823	203467823	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR419																					ENST00000367222.2:c.385C>A	p.Leu129Met	p.L129M	ENST00000367222	NM_014359.3	129	Ctg/Atg	0	
NID1	4811		GRCh37	1	236154250	236154250	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR419																					ENST00000264187.6:c.2864A>G	p.Glu955Gly	p.E955G	ENST00000264187	NM_002508.2	955	gAg/gGg	0	
PLEK	5341		GRCh37	2	68608002	68608002	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR419																					ENST00000234313.7:c.346A>G	p.Arg116Gly	p.R116G	ENST00000234313	NM_002664.2	116	Agg/Ggg	0	
CCDC115	84317		GRCh37	2	131098552	131098552	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR419																					ENST00000259229.2:c.359A>G	p.Gln120Arg	p.Q120R	ENST00000259229	NM_032357.2	120	cAg/cGg	0	
GPR39	2863		GRCh37	2	133175061	133175061	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR419																					ENST00000329321.3:c.446C>A	p.Pro149His	p.P149H	ENST00000329321	NM_001508.2	149	cCt/cAt	0	
ALS2CR12	130540		GRCh37	2	202153503	202153503	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR419																					ENST00000286190.5:c.1213C>T	p.Gln405Ter	p.Q405*	ENST00000286190		405	Caa/Taa	0	
AC079354.1			GRCh37	2	202978144	202978144	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR419																					ENST00000541917.1:c.1842A>C	p.Gln614His	p.Q614H	ENST00000541917		614	caA/caC	0	
ABCA12	26154		GRCh37	2	215807722	215807722	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR419																					ENST00000272895.7:c.7363C>G	p.Leu2455Val	p.L2455V	ENST00000272895	NM_173076.2	2455	Ctc/Gtc	0	
SEMA5B	54437		GRCh37	3	122634634	122634634	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR419																					ENST00000357599.3:c.1792A>C	p.Ile598Leu	p.I598L	ENST00000357599	NM_001256348.1	598	Atc/Ctc	0	
PLXNA1	5361		GRCh37	3	126707623	126707623	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR419																					ENST00000393409.2:c.187G>C	p.Val63Leu	p.V63L	ENST00000393409	NM_032242.3	63	Gtg/Ctg	0	
TRIM42	287015		GRCh37	3	140401826	140401826	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR419																					ENST00000286349.3:c.864G>T	p.Lys288Asn	p.K288N	ENST00000286349	NM_152616.4	288	aaG/aaT	0	
PDE6B	5158		GRCh37	4	647932	647932	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR419																					ENST00000496514.1:c.916C>A	p.Pro306Thr	p.P306T	ENST00000496514		306	Cct/Act	0	
GAK	2580		GRCh37	4	871431	871431	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR419																					ENST00000314167.4:c.1828A>C	p.Ser610Arg	p.S610R	ENST00000314167	NM_005255.2	610	Agc/Cgc	0	
FAM13A	10144		GRCh37	4	89670980	89670980	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR419																					ENST00000264344.5:c.2021G>C	p.Ser674Thr	p.S674T	ENST00000264344	NM_014883.3	674	aGc/aCc	0	
CAMK2D	817		GRCh37	4	114435066	114435066	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR419																					ENST00000342666.5:c.823C>T	p.Arg275Cys	p.R275C	ENST00000342666		275	Cgt/Tgt	0	
POLK	51426		GRCh37	5	74872643	74872643	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR419																					ENST00000241436.4:c.579G>T	p.Met193Ile	p.M193I	ENST00000241436	NM_016218.2	193	atG/atT	0	
EPB41L4A	64097		GRCh37	5	111570427	111570427	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR419																					ENST00000261486.5:c.991C>G	p.Arg331Gly	p.R331G	ENST00000261486	NM_022140.3	331	Cga/Gga	0	
PCDHGA4	56111		GRCh37	5	140735785	140735785	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR419																					ENST00000571252.1:c.1018G>T	p.Glu340Ter	p.E340*	ENST00000571252	NM_018917.2	340	Gaa/Taa	0	
KIF4B	285643		GRCh37	5	154396177	154396177	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR419																					ENST00000435029.4:c.2758C>G	p.Leu920Val	p.L920V	ENST00000435029	NM_001099293.1	920	Ctg/Gtg	0	
STK10	6793		GRCh37	5	171583761	171583761	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR419																					ENST00000176763.5:c.188C>A	p.Ala63Glu	p.A63E	ENST00000176763	NM_005990.3	63	gCg/gAg	0	
MAK	4117		GRCh37	6	10809101	10809101	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR419																					ENST00000313243.2:c.433G>C	p.Gly145Arg	p.G145R	ENST00000313243		145	Gga/Cga	0	
PRRC2A	7916		GRCh37	6	31600622	31600622	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR419																					ENST00000376007.4:c.4172G>T	p.Gly1391Val	p.G1391V	ENST00000376007	NM_080686.2	1391	gGc/gTc	0	
PTCHD4	442213		GRCh37	6	47846185	47846185	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR419																					ENST00000339488.4:c.2395T>A	p.Cys799Ser	p.C799S	ENST00000339488	NM_001013732.3	799	Tgt/Agt	0	
MAP3K7	6885		GRCh37	6	91261779	91261779	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR419																					ENST00000369329.3:c.856C>A	p.His286Asn	p.H286N	ENST00000369329	NM_145331.2	286	Cac/Aac	0	
TAAR1	134864		GRCh37	6	132966791	132966791	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR419																					ENST00000275216.1:c.352T>G	p.Ser118Ala	p.S118A	ENST00000275216	NM_138327.1	118	Tcc/Gcc	0	
LPA	4018		GRCh37	6	160969593	160969593	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR419																					ENST00000316300.5:c.5072C>T	p.Thr1691Met	p.T1691M	ENST00000316300		1691	aCg/aTg	0	
EIF3B	8662		GRCh37	7	2403288	2403288	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR419																					ENST00000360876.4:c.892G>C	p.Glu298Gln	p.E298Q	ENST00000360876	NM_001037283.1	298	Gaa/Caa	0	
CDCA7L	55536		GRCh37	7	21945986	21945986	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR419																					ENST00000406877.3:c.842T>A	p.Phe281Tyr	p.F281Y	ENST00000406877	NM_018719.4	281	tTt/tAt	0	
AASS	10157		GRCh37	7	121733194	121733194	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR419																					ENST00000393376.1:c.1674G>T	p.Leu558Phe	p.L558F	ENST00000393376		558	ttG/ttT	0	
BLK	640		GRCh37	8	11407714	11407714	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR419																					ENST00000259089.4:c.415C>G	p.Leu139Val	p.L139V	ENST00000259089	NM_001715.2	139	Ctt/Gtt	0	
MFSD3	113655		GRCh37	8	145736189	145736189	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR419																					ENST00000301327.4:c.968T>C	p.Leu323Pro	p.L323P	ENST00000301327	NM_138431.1	323	cTg/cCg	0	
DAPK1	1612		GRCh37	9	90252977	90252977	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR419																					ENST00000358077.5:c.404T>C	p.Ile135Thr	p.I135T	ENST00000358077	NM_001288731.1	135	aTc/aCc	0	
OR13F1	138805		GRCh37	9	107267025	107267025	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR419																					ENST00000334726.2:c.482T>A	p.Met161Lys	p.M161K	ENST00000334726	NM_001004485.1	161	aTg/aAg	0	
MYO3A	53904		GRCh37	10	26462642	26462642	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR419																					ENST00000265944.5:c.3449G>C	p.Arg1150Thr	p.R1150T	ENST00000265944	NM_017433.4	1150	aGa/aCa	0	
GDF2	2658		GRCh37	10	48413619	48413619	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR419																					ENST00000249598.1:c.1249C>A	p.His417Asn	p.H417N	ENST00000249598	NM_016204.1	417	Cat/Aat	0	
ZNF503-AS2	100131213		GRCh37	10	77167417	77167417	+	non_coding_transcript_exon_variant	RNA	SNP	G	G	C			brca_smc_2018_BR419																					ENST00000425916.3:n.703G>C		p.*235*	ENST00000425916				0	
SFXN3	81855		GRCh37	10	102798401	102798401	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR419																					ENST00000224807.5:c.785G>A	p.Arg262His	p.R262H	ENST00000224807	NM_030971.3	262	cGc/cAc	0	
FGF8	2253		GRCh37	10	103534666	103534666	+	intron_variant	Intron	SNP	T	T	C			brca_smc_2018_BR419																					ENST00000344255.3:c.157-30A>G		p.*53*	ENST00000344255				0	
COPB1	1315		GRCh37	11	14490280	14490280	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR419																					ENST00000249923.3:c.2092G>T	p.Gly698Cys	p.G698C	ENST00000249923	NM_016451.4	698	Ggt/Tgt	0	
COPB1	1315		GRCh37	11	14490281	14490281	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR419																					ENST00000249923.3:c.2091G>A	p.Met697Ile	p.M697I	ENST00000249923	NM_016451.4	697	atG/atA	0	
CHST1	8534		GRCh37	11	45671986	45671986	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR419																					ENST00000308064.2:c.488G>A	p.Arg163Gln	p.R163Q	ENST00000308064	NM_003654.5	163	cGg/cAg	0	
SSPN	8082		GRCh37	12	26383925	26383925	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR419																					ENST00000242729.2:c.648G>A	p.Met216Ile	p.M216I	ENST00000242729	NM_005086.4	216	atG/atA	0	
ITPR2	3709		GRCh37	12	26581015	26581015	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR419																					ENST00000381340.3:c.6776T>A	p.Leu2259His	p.L2259H	ENST00000381340	NM_002223.2	2259	cTt/cAt	0	
ALG10B	144245		GRCh37	12	38714575	38714575	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR419																					ENST00000308742.4:c.982G>A	p.Val328Met	p.V328M	ENST00000308742	NM_001013620.3	328	Gtg/Atg	0	
CELA1	1990		GRCh37	12	51723569	51723569	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR419																					ENST00000293636.1:c.658G>T	p.Val220Phe	p.V220F	ENST00000293636	NM_001971.5	220	Gtc/Ttc	0	
CDK2	1017		GRCh37	12	56363337	56363337	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR419																					ENST00000266970.4:c.565C>G	p.Leu189Val	p.L189V	ENST00000266970	NM_001798.3	189	Ctg/Gtg	0	
CCNA1	8900		GRCh37	13	37014115	37014115	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BR419																					ENST00000255465.4:c.894-1G>A		p.X298_splice	ENST00000255465		298		0	
C15orf52			GRCh37	15	40627592	40627592	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR419																					ENST00000559313.1:c.1372C>T	p.Gln458Ter	p.Q458*	ENST00000559313	NM_207380.2	458	Cag/Tag	0	
EPB42	2038		GRCh37	15	43507484	43507484	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR419																					ENST00000441366.2:c.239C>G	p.Pro80Arg	p.P80R	ENST00000441366	NM_001114134.1	80	cCa/cGa	0	
ROGDI	79641		GRCh37	16	4852425	4852425	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR419																					ENST00000322048.7:c.75C>G	p.Asp25Glu	p.D25E	ENST00000322048	NM_024589.2	25	gaC/gaG	0	
RANBP10	57610		GRCh37	16	67768935	67768935	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR419																					ENST00000317506.3:c.602A>T	p.Tyr201Phe	p.Y201F	ENST00000317506	NM_020850.1	201	tAc/tTc	0	
TP53	7157		GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR419																					ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag	0	
COLEC12	81035		GRCh37	18	347342	347342	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BR419																					ENST00000400256.3:c.281-1G>C		p.X94_splice	ENST00000400256	NM_130386.2	94		0	
ESCO1	114799		GRCh37	18	19140834	19140834	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR419																					ENST00000269214.5:c.1939G>C	p.Ala647Pro	p.A647P	ENST00000269214	NM_052911.2	647	Gct/Cct	0	
KISS1R	84634		GRCh37	19	920617	920617	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR419																					ENST00000234371.5:c.1066C>T	p.Pro356Ser	p.P356S	ENST00000234371	NM_032551.4	356	Ccc/Tcc	0	
ZNF85	7639		GRCh37	19	21132893	21132893	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR419																					ENST00000328178.8:c.1573C>T	p.Leu525Phe	p.L525F	ENST00000328178	NM_003429.4	525	Ctt/Ttt	0	
CYP2S1	29785		GRCh37	19	41711915	41711915	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR419																					ENST00000310054.4:c.1217T>A	p.Phe406Tyr	p.F406Y	ENST00000310054	NM_030622.6	406	tTc/tAc	0	
ZC3H4	23211		GRCh37	19	47597656	47597656	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR419																					ENST00000253048.5:c.371C>G	p.Ser124Cys	p.S124C	ENST00000253048	NM_015168.1	124	tCc/tGc	0	
CEACAM18	729767		GRCh37	19	51981925	51981925	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR419																					ENST00000396477.4:c.29T>G	p.Leu10Arg	p.L10R	ENST00000396477	NM_001278392.1	10	cTg/cGg	0	
SIGLEC5	8778		GRCh37	19	52132641	52132641	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR419																					ENST00000534261.2:c.670A>C	p.Thr224Pro	p.T224P	ENST00000534261		224	Acg/Ccg	0	
SOGA1	140710		GRCh37	20	35444133	35444133	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR419																					ENST00000237536.4:c.1712A>C	p.Glu571Ala	p.E571A	ENST00000237536	NM_080627.2	571	gAg/gCg	0	
POFUT2	23275		GRCh37	21	46702334	46702334	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR419																					ENST00000349485.5:c.568G>A	p.Val190Ile	p.V190I	ENST00000349485	NM_133635.4	190	Gtc/Atc	0	
ARAF	369		GRCh37	X	47430765	47430765	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR419																					ENST00000377045.4:c.1730T>C	p.Ile577Thr	p.I577T	ENST00000377045	NM_001654.4	577	aTt/aCt	0	
FOXP3	50943		GRCh37	X	49114815	49114815	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR419																					ENST00000376207.4:c.148C>A	p.Leu50Ile	p.L50I	ENST00000376207	NM_014009.3	50	Ctt/Att	0	
RAB41	347517		GRCh37	X	69503145	69503145	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR419																					ENST00000374473.2:c.265G>C	p.Gly89Arg	p.G89R	ENST00000374473		89	Ggc/Cgc	0	
DLG3	1741		GRCh37	X	69712066	69712066	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR419																					ENST00000374360.3:c.1630T>C	p.Trp544Arg	p.W544R	ENST00000374360	NM_021120.3	544	Tgg/Cgg	0	
MORC4	79710		GRCh37	X	106229330	106229330	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR419																					ENST00000355610.4:c.409C>T	p.Leu137Phe	p.L137F	ENST00000355610	NM_001085354.2	137	Ctt/Ttt	0	
HMGCL	3155		GRCh37	1	24164760	24164760	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR469																					ENST00000374487.2:c.29G>T	p.Arg10Met	p.R10M	ENST00000374487		10	aGg/aTg	0	
APOB	338		GRCh37	2	21233706	21233706	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR469																					ENST00000233242.1:c.6034C>T	p.Arg2012Ter	p.R2012*	ENST00000233242	NM_000384.2	2012	Cga/Tga	0	
ABI3BP	25890		GRCh37	3	100470404	100470404	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR469																					ENST00000284322.5:c.3104T>C	p.Ile1035Thr	p.I1035T	ENST00000284322	NM_015429.3	1035	aTc/aCc	0	
PIK3CA	5290		GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR469																					ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt	0	
GRM4	2914		GRCh37	6	34101107	34101107	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR469																					ENST00000538487.2:c.167C>A	p.Pro56Gln	p.P56Q	ENST00000538487	NM_000841.2	56	cCg/cAg	0	
GBA2	57704		GRCh37	9	35740305	35740305	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR469																					ENST00000378103.3:c.1184C>G	p.Ser395Cys	p.S395C	ENST00000378103	NM_020944.2	395	tCc/tGc	0	
TNNT3	7140		GRCh37	11	1956135	1956135	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR469																					ENST00000397301.1:c.700C>T	p.Arg234Cys	p.R234C	ENST00000397301		234	Cgc/Tgc	0	
APAF1	317		GRCh37	12	99042138	99042138	+	start_lost	Translation_Start_Site	SNP	A	A	G			brca_smc_2018_BR469																					ENST00000551964.1:c.1A>G	p.Met1?	p.M1?	ENST00000551964	NM_181861.1	1	Atg/Gtg	0	
GATA5	140628		GRCh37	20	61041486	61041486	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR469																					ENST00000252997.2:c.821A>G	p.His274Arg	p.H274R	ENST00000252997	NM_080473.4	274	cAc/cGc	0	
PPIL2	23759		GRCh37	22	22049731	22049731	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR469																					ENST00000335025.8:c.1515G>T	p.Met505Ile	p.M505I	ENST00000335025		505	atG/atT	0	
PORCN	64840		GRCh37	X	48372705	48372705	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR469																					ENST00000326194.6:c.797C>A	p.Ala266Asp	p.A266D	ENST00000326194	NM_203475.1	266	gCc/gAc	0	
KIF4A	24137		GRCh37	X	69510430	69510430	+	splice_donor_variant	Splice_Site	SNP	T	T	G			brca_smc_2018_BR469																					ENST00000374403.3:c.120+2T>G		p.X40_splice	ENST00000374403	NM_012310.4	40		0	
VWA5B1	127731		GRCh37	1	20659431	20659431	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_081																					ENST00000375079.2:c.1745C>G	p.Ser582Cys	p.S582C	ENST00000375079	NM_001039500.2	582	tCc/tGc	0	
ABCA4	24		GRCh37	1	94568570	94568570	+	splice_donor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BB01_081																					ENST00000370225.3:c.570+1G>C		p.X190_splice	ENST00000370225	NM_000350.2	190		0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_081																					ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt	0	
VCAN	1462		GRCh37	5	82807963	82807963	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_081																					ENST00000265077.3:c.790G>A	p.Glu264Lys	p.E264K	ENST00000265077	NM_004385.4	264	Gag/Aag	0	
NHLRC1	378884		GRCh37	6	18122732	18122732	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_081																					ENST00000340650.3:c.106C>T	p.Arg36Trp	p.R36W	ENST00000340650	NM_198586.2	36	Cgg/Tgg	0	
UBD	10537		GRCh37	6	29523931	29523931	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_081																					ENST00000377050.4:c.224A>T	p.His75Leu	p.H75L	ENST00000377050	NM_006398.3	75	cAc/cTc	0	
FOXP4	116113		GRCh37	6	41554828	41554828	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_081																					ENST00000307972.4:c.592C>T	p.Gln198Ter	p.Q198*	ENST00000307972		198	Cag/Tag	0	
ZDHHC14	79683		GRCh37	6	158093922	158093922	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_081																					ENST00000359775.5:c.1235C>A	p.Pro412His	p.P412H	ENST00000359775		412	cCc/cAc	0	
ZNF775	285971		GRCh37	7	150094571	150094571	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_081																					ENST00000329630.5:c.1002G>T	p.Glu334Asp	p.E334D	ENST00000329630	NM_173680.3	334	gaG/gaT	0	
KIAA1875			GRCh37	8	145170467	145170467	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_081																					ENST00000323662.8:c.4301G>A	p.Arg1434His	p.R1434H	ENST00000323662		1434	cGt/cAt	0	
AHNAK	79026		GRCh37	11	62299779	62299779	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_081																					ENST00000378024.4:c.2110T>G	p.Leu704Val	p.L704V	ENST00000378024	NM_001620.2	704	Ttg/Gtg	0	
PATL2	197135		GRCh37	15	44960570	44960570	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_081																					ENST00000434130.1:c.1335G>T	p.Glu445Asp	p.E445D	ENST00000434130	NM_001145112.1	445	gaG/gaT	0	
FMNL1	752		GRCh37	17	43309846	43309846	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_081																					ENST00000331495.3:c.326G>C	p.Gly109Ala	p.G109A	ENST00000331495	NM_005892.3	109	gGg/gCg	0	
HEATR6	63897		GRCh37	17	58123464	58123464	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_081																					ENST00000184956.6:c.2896A>T	p.Thr966Ser	p.T966S	ENST00000184956	NM_022070.4	966	Aca/Tca	0	
TXNDC2	84203		GRCh37	18	9887656	9887656	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_081																					ENST00000306084.6:c.1180G>A	p.Glu394Lys	p.E394K	ENST00000306084	NM_001098529.1	394	Gag/Aag	0	
TCEB3B			GRCh37	18	44560933	44560933	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_081																					ENST00000332567.4:c.703C>T	p.Arg235Cys	p.R235C	ENST00000332567	NM_016427.2	235	Cgc/Tgc	0	
CYP2A7	1549		GRCh37	19	41386491	41386491	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_081																					ENST00000301146.4:c.386G>A	p.Arg129His	p.R129H	ENST00000301146	NM_000764.2	129	cGc/cAc	0	
SIGLEC8	27181		GRCh37	19	51960450	51960450	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_081																					ENST00000321424.3:c.769G>T	p.Gly257Ter	p.G257*	ENST00000321424	NM_014442.2	257	Gga/Tga	0	
CECR6			GRCh37	22	17601488	17601488	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_081																					ENST00000331437.3:c.530G>T	p.Cys177Phe	p.C177F	ENST00000331437	NM_031890.3	177	tGc/tTc	0	
PDHA1	5160		GRCh37	X	19372619	19372619	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_081																					ENST00000422285.2:c.521G>T	p.Gly174Val	p.G174V	ENST00000422285		174	gGc/gTc	0	
BMP15	9210		GRCh37	X	50658973	50658973	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_081																					ENST00000252677.3:c.545A>C	p.Lys182Thr	p.K182T	ENST00000252677	NM_005448.2	182	aAa/aCa	0	
SHC1	6464		GRCh37	1	154940681	154940681	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_055																					ENST00000368445.5:c.803C>T	p.Pro268Leu	p.P268L	ENST00000368445	NM_183001.4	268	cCg/cTg	0	
INSRR	3645		GRCh37	1	156811515	156811515	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_055																					ENST00000368195.3:c.3469C>T	p.Arg1157Cys	p.R1157C	ENST00000368195	NM_014215.2	1157	Cgc/Tgc	0	
RYR2	6262		GRCh37	1	237754074	237754074	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_055																					ENST00000366574.2:c.3942C>A	p.Phe1314Leu	p.F1314L	ENST00000366574	NM_001035.2	1314	ttC/ttA	0	
GEN1	348654		GRCh37	2	17962824	17962824	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_055																					ENST00000317402.7:c.2345A>T	p.Asp782Val	p.D782V	ENST00000317402	NM_182625.3	782	gAt/gTt	0	
SERPINE2	5270		GRCh37	2	224866605	224866605	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_055																					ENST00000258405.4:c.13C>A	p.Leu5Ile	p.L5I	ENST00000258405	NM_001136528.1	5	Ctc/Atc	0	
EPHA5	2044		GRCh37	4	66467778	66467778	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_055																					ENST00000273854.3:c.491G>A	p.Arg164Lys	p.R164K	ENST00000273854	NM_004439.5	164	aGa/aAa	0	
PCDHB14	56122		GRCh37	5	140603450	140603450	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_055																					ENST00000239449.4:c.373G>A	p.Asp125Asn	p.D125N	ENST00000239449	NM_018934.2	125	Gac/Aac	0	
TNXB	7148		GRCh37	6	32024494	32024494	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_055																					ENST00000375244.3:c.8012C>T	p.Ala2671Val	p.A2671V	ENST00000375244		2671	gCg/gTg	0	
ASAH2C			GRCh37	10	48029279	48029279	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_055																					ENST00000426610.2:c.607C>T	p.Arg203Cys	p.R203C	ENST00000426610		203	Cgt/Tgt	0	
CHAT	1103		GRCh37	10	50870733	50870733	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_055																					ENST00000337653.2:c.1882C>T	p.Arg628Trp	p.R628W	ENST00000337653	NM_020549.4	628	Cgg/Tgg	0	
OR51F2	119694		GRCh37	11	4843244	4843244	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_055																					ENST00000322110.5:c.629G>A	p.Ser210Asn	p.S210N	ENST00000322110	NM_001004753.1	210	aGc/aAc	0	
OAF	220323		GRCh37	11	120099704	120099704	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_055																					ENST00000328965.4:c.675C>G	p.Tyr225Ter	p.Y225*	ENST00000328965	NM_178507.2	225	taC/taG	0	
CSAD	51380		GRCh37	12	53552387	53552387	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_055																					ENST00000444623.1:c.1390T>C	p.Phe464Leu	p.F464L	ENST00000444623	NM_001244705.1	464	Ttc/Ctc	0	
CPPED1	55313		GRCh37	16	12758772	12758772	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_055																					ENST00000381774.4:c.916G>A	p.Asp306Asn	p.D306N	ENST00000381774	NM_018340.2	306	Gat/Aat	0	
FAM65A			GRCh37	16	67578991	67578991	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_055																					ENST00000379312.3:c.3014C>T	p.Ser1005Phe	p.S1005F	ENST00000379312	NM_001193522.1	1005	tCc/tTc	0	
ARHGAP44	9912		GRCh37	17	12852518	12852518	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_055																					ENST00000379672.5:c.923G>T	p.Cys308Phe	p.C308F	ENST00000379672	NM_014859.4	308	tGc/tTc	0	
CEP95	90799		GRCh37	17	62506314	62506314	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_055																					ENST00000556440.2:c.172C>G	p.Gln58Glu	p.Q58E	ENST00000556440	NM_138363.1	58	Caa/Gaa	0	
PALM3	342979		GRCh37	19	14164728	14164728	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_055																					ENST00000340790.4:c.1711G>T	p.Glu571Ter	p.E571*	ENST00000340790	NM_001145028.1	571	Gag/Tag	0	
STRN4	29888		GRCh37	19	47242119	47242119	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_055																					ENST00000263280.6:c.309G>T	p.Glu103Asp	p.E103D	ENST00000263280	NM_013403.2	103	gaG/gaT	0	
NCOA3	8202		GRCh37	20	46264136	46264136	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_055																					ENST00000371998.3:c.1183A>G	p.Asn395Asp	p.N395D	ENST00000371998		395	Aac/Gac	0	
CLIC6	54102		GRCh37	21	36080249	36080249	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_055																					ENST00000360731.3:c.1546G>A	p.Ala516Thr	p.A516T	ENST00000360731		516	Gca/Aca	0	
GPR64			GRCh37	X	19009014	19009014	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_055																					ENST00000379869.3:c.3022C>T	p.Arg1008Trp	p.R1008W	ENST00000379869	NM_001079858.2	1008	Cgg/Tgg	0	
ARR3	407		GRCh37	X	69495945	69495945	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_055																					ENST00000307959.8:c.159G>T	p.Leu53Phe	p.L53F	ENST00000307959	NM_004312.2	53	ttG/ttT	0	
NONO	4841		GRCh37	X	70516786	70516786	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_055																					ENST00000276079.8:c.832G>T	p.Glu278Ter	p.E278*	ENST00000276079	NM_007363.4	278	Gag/Tag	0	
ATRX	546		GRCh37	X	76872194	76872194	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_055																					ENST00000373344.5:c.5453A>G	p.Lys1818Arg	p.K1818R	ENST00000373344	NM_000489.3	1818	aAa/aGa	0	
COL4A6	1288		GRCh37	X	107454914	107454914	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_055																					ENST00000372216.4:c.501C>A	p.Phe167Leu	p.F167L	ENST00000372216	NM_001847.2	167	ttC/ttA	0	
SPEN	23013		GRCh37	1	16260851	16260851	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_128																					ENST00000375759.3:c.8116G>A	p.Val2706Ile	p.V2706I	ENST00000375759	NM_015001.2	2706	Gtt/Att	0	
AUNIP	79000		GRCh37	1	26162104	26162104	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_128																					ENST00000374298.3:c.454G>A	p.Glu152Lys	p.E152K	ENST00000374298	NM_024037.1	152	Gag/Aag	0	
KNCN	148930		GRCh37	1	47016782	47016782	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_128																					ENST00000481882.2:c.106G>A	p.Ala36Thr	p.A36T	ENST00000481882		36	Gct/Act	0	
INSRR	3645		GRCh37	1	156821100	156821100	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_128																					ENST00000368195.3:c.1211G>A	p.Gly404Glu	p.G404E	ENST00000368195	NM_014215.2	404	gGa/gAa	0	
ABL2	27		GRCh37	1	179077706	179077706	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_128																					ENST00000502732.1:c.2696T>C	p.Leu899Pro	p.L899P	ENST00000502732	NM_001168237.1	899	cTt/cCt	0	
HOXD12	3238		GRCh37	2	176964857	176964857	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_128																					ENST00000406506.2:c.328G>A	p.Glu110Lys	p.E110K	ENST00000406506		110	Gag/Aag	0	
TTN	7273		GRCh37	2	179482625	179482625	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_128																					ENST00000591111.1:c.42530C>T	p.Ala14177Val	p.A14177V	ENST00000591111		14177	gCa/gTa	0	
EFHB	151651		GRCh37	3	19938319	19938319	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_128																					ENST00000295824.9:c.1585A>T	p.Ile529Phe	p.I529F	ENST00000295824	NM_144715.3	529	Atc/Ttc	0	
EPHB1	2047		GRCh37	3	134670340	134670340	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_128																					ENST00000398015.3:c.251G>A	p.Arg84His	p.R84H	ENST00000398015	NM_004441.4	84	cGc/cAc	0	
COPB2	9276		GRCh37	3	139092614	139092614	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_128																					ENST00000333188.5:c.788T>C	p.Leu263Pro	p.L263P	ENST00000333188	NM_004766.2	263	cTt/cCt	0	
IGSF10	285313		GRCh37	3	151176458	151176458	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_128																					ENST00000282466.3:c.40T>A	p.Ser14Thr	p.S14T	ENST00000282466	NM_178822.4	14	Tcc/Acc	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_128																					ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt	0	
ADAMTS3	9508		GRCh37	4	73164114	73164114	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_128																					ENST00000286657.4:c.2470T>C	p.Tyr824His	p.Y824H	ENST00000286657	NM_014243.2	824	Tac/Cac	0	
MROH2B	133558		GRCh37	5	41004560	41004560	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_128																					ENST00000399564.4:c.4082T>C	p.Val1361Ala	p.V1361A	ENST00000399564	NM_173489.4	1361	gTc/gCc	0	
CANX	821		GRCh37	5	179149851	179149851	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_128																					ENST00000247461.4:c.1229A>T	p.Asp410Val	p.D410V	ENST00000247461	NM_001746.3	410	gAt/gTt	0	
WIPI2	26100		GRCh37	7	5267842	5267842	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_128																					ENST00000288828.4:c.1121G>T	p.Arg374Leu	p.R374L	ENST00000288828	NM_001278299.1	374	cGg/cTg	0	
ABCA13	154664		GRCh37	7	48312924	48312924	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_128																					ENST00000435803.1:c.3661G>A	p.Asp1221Asn	p.D1221N	ENST00000435803	NM_152701.3	1221	Gac/Aac	0	
AUTS2	26053		GRCh37	7	70255233	70255233	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_128																					ENST00000342771.4:c.3031T>C	p.Ser1011Pro	p.S1011P	ENST00000342771	NM_015570.2	1011	Tcg/Ccg	0	
WDR91	29062		GRCh37	7	134882810	134882810	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_128																					ENST00000354475.4:c.985C>T	p.Arg329Trp	p.R329W	ENST00000354475	NM_014149.3	329	Cgg/Tgg	0	
UBE3C	9690		GRCh37	7	157041140	157041140	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_128																					ENST00000348165.5:c.2560G>A	p.Val854Met	p.V854M	ENST00000348165	NM_014671.2	854	Gtg/Atg	0	
FGF20	26281		GRCh37	8	16850730	16850730	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_128																					ENST00000180166.5:c.487C>T	p.Arg163Cys	p.R163C	ENST00000180166	NM_019851.2	163	Cgc/Tgc	0	
SULF1	23213		GRCh37	8	70551095	70551095	+	splice_donor_variant	Splice_Site	SNP	T	T	C			brca_smc_2018_BB01_128																					ENST00000260128.4:c.2551+2T>C		p.X851_splice	ENST00000260128	NM_015170.2	851		0	
TSTA3	7264		GRCh37	8	144698299	144698299	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_128																					ENST00000425753.2:c.238A>C	p.Ile80Leu	p.I80L	ENST00000425753	NM_003313.3	80	Atc/Ctc	0	
RFX3	5991		GRCh37	9	3395471	3395471	+	splice_donor_variant	Splice_Site	SNP	C	C	A			brca_smc_2018_BB01_128																					ENST00000382004.3:c.117+1G>T		p.X39_splice	ENST00000382004	NM_134428.1	39		0	
EXD3	54932		GRCh37	9	140267496	140267496	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_128																					ENST00000340951.4:c.323C>T	p.Ala108Val	p.A108V	ENST00000340951	NM_017820.3	108	gCc/gTc	0	
LGR4	55366		GRCh37	11	27389932	27389932	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_128																					ENST00000379214.4:c.2338G>T	p.Glu780Ter	p.E780*	ENST00000379214	NM_018490.2	780	Gaa/Taa	0	
P2RY2	5029		GRCh37	11	72945220	72945220	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_128																					ENST00000311131.2:c.16G>A	p.Gly6Ser	p.G6S	ENST00000311131	NM_176072.2	6	Ggc/Agc	0	
DYNC2H1	79659		GRCh37	11	102991527	102991527	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_128																					ENST00000375735.2:c.1244A>T	p.Gln415Leu	p.Q415L	ENST00000375735	NM_001080463.1	415	cAg/cTg	0	
TRIP11	9321		GRCh37	14	92465723	92465723	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_128																					ENST00000267622.4:c.4753C>G	p.Arg1585Gly	p.R1585G	ENST00000267622	NM_004239.3	1585	Cgt/Ggt	0	
AK7	122481		GRCh37	14	96917788	96917788	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_128																					ENST00000267584.4:c.979T>G	p.Leu327Val	p.L327V	ENST00000267584	NM_152327.3	327	Tta/Gta	0	
C15orf52			GRCh37	15	40627540	40627540	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_128																					ENST00000559313.1:c.1424G>A	p.Cys475Tyr	p.C475Y	ENST00000559313	NM_207380.2	475	tGc/tAc	0	
TP53	7157		GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_128																					ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC	0	
ALOXE3	59344		GRCh37	17	8000087	8000087	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_128																					ENST00000448843.2:c.1994A>G	p.Glu665Gly	p.E665G	ENST00000448843	NM_021628.2	665	gAg/gGg	0	
NGFR	4804		GRCh37	17	47583720	47583720	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_128																					ENST00000172229.3:c.268G>A	p.Val90Met	p.V90M	ENST00000172229	NM_002507.3	90	Gtg/Atg	0	
ABCA10	10349		GRCh37	17	67160277	67160277	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_128																					ENST00000269081.4:c.3301T>G	p.Leu1101Val	p.L1101V	ENST00000269081	NM_080282.3	1101	Ttg/Gtg	0	
SETBP1	26040		GRCh37	18	42531988	42531988	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_128																					ENST00000282030.5:c.2683G>A	p.Asp895Asn	p.D895N	ENST00000282030	NM_015559.2	895	Gat/Aat	0	
AURKC	6795		GRCh37	19	57746672	57746672	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_128																					ENST00000302804.7:c.817C>A	p.Leu273Ile	p.L273I	ENST00000302804	NM_001015878.1	273	Ctt/Att	0	
HCK	3055		GRCh37	20	30689288	30689288	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_128																					ENST00000534862.1:c.1487C>T	p.Thr496Met	p.T496M	ENST00000534862	NM_001172132.1	496	aCg/aTg	0	
ACSS2	55902		GRCh37	20	33513500	33513500	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BB01_128																					ENST00000360596.2:c.1658-1G>A		p.X553_splice	ENST00000360596	NM_018677.3	553		0	
TBL1X	6907		GRCh37	X	9679656	9679656	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_128																					ENST00000217964.7:c.1445C>T	p.Ser482Leu	p.S482L	ENST00000217964	NM_005647.3	482	tCg/tTg	0	
TXLNG	55787		GRCh37	X	16804660	16804660	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_128																					ENST00000380122.5:c.50A>G	p.Glu17Gly	p.E17G	ENST00000380122	NM_018360.2	17	gAa/gGa	0	
SMC1A	8243		GRCh37	X	53430789	53430789	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_128																					ENST00000322213.4:c.2233G>A	p.Gly745Arg	p.G745R	ENST00000322213	NM_001281463.1	745	Ggg/Agg	0	
PGK1	5230		GRCh37	X	77378756	77378756	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_128																					ENST00000373316.4:c.821A>C	p.Glu274Ala	p.E274A	ENST00000373316	NM_000291.3	274	gAg/gCg	0	
PLS3	5358		GRCh37	X	114863575	114863575	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_128																					ENST00000355899.3:c.303A>C	p.Glu101Asp	p.E101D	ENST00000355899	NM_005032.5	101	gaA/gaC	0	
RIMKLA	284716		GRCh37	1	42865108	42865108	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR374																					ENST00000431473.3:c.197T>C	p.Phe66Ser	p.F66S	ENST00000431473	NM_173642.3	66	tTc/tCc	0	
COL5A2	1290		GRCh37	2	189953450	189953450	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR374																					ENST00000374866.3:c.616A>G	p.Ser206Gly	p.S206G	ENST00000374866	NM_000393.3	206	Agt/Ggt	0	
TRPM8	79054		GRCh37	2	234894382	234894382	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR374																					ENST00000324695.4:c.2812C>G	p.Pro938Ala	p.P938A	ENST00000324695	NM_024080.4	938	Cca/Gca	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR374																					ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt	0	
KIAA1211	57482		GRCh37	4	57180272	57180272	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR374																					ENST00000264229.6:c.604G>C	p.Glu202Gln	p.E202Q	ENST00000264229	NM_020722.1	202	Gag/Cag	0	
DNAH5	1767		GRCh37	5	13794121	13794121	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR374																					ENST00000265104.4:c.7934G>T	p.Gly2645Val	p.G2645V	ENST00000265104	NM_001369.2	2645	gGc/gTc	0	
PKHD1	5314		GRCh37	6	51613377	51613377	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR374																					ENST00000371117.3:c.9037T>G	p.Ser3013Ala	p.S3013A	ENST00000371117	NM_138694.3	3013	Tcc/Gcc	0	
SPG11	80208		GRCh37	15	44914119	44914119	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR374																					ENST00000261866.7:c.2458G>T	p.Glu820Ter	p.E820*	ENST00000261866	NM_025137.3	820	Gaa/Taa	0	
TP53	7157		GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR374																					ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc	0	
GREB1	9687		GRCh37	2	11756778	11756778	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR300																					ENST00000234142.5:c.3344G>T	p.Ser1115Ile	p.S1115I	ENST00000234142		1115	aGc/aTc	0	
PARD3B	117583		GRCh37	2	205969238	205969238	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR300																					ENST00000406610.2:c.593G>T	p.Ser198Ile	p.S198I	ENST00000406610	NM_205863.3	198	aGt/aTt	0	
SPHKAP	80309		GRCh37	2	228892223	228892223	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR300																					ENST00000392056.3:c.283T>A	p.Cys95Ser	p.C95S	ENST00000392056	NM_001142644.1	95	Tgc/Agc	0	
FRYL	285527		GRCh37	4	48559625	48559625	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR300																					ENST00000358350.4:c.3970C>T	p.Leu1324Phe	p.L1324F	ENST00000358350	NM_015030.1	1324	Ctc/Ttc	0	
ACSL1	2180		GRCh37	4	185686066	185686066	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR300																					ENST00000281455.2:c.1373A>G	p.Tyr458Cys	p.Y458C	ENST00000281455	NM_001995.2	458	tAc/tGc	0	
TMPRSS13	84000		GRCh37	11	117789345	117789345	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR300																					ENST00000524993.1:c.230C>G	p.Ala77Gly	p.A77G	ENST00000524993	NM_001077263.2	77	gCc/gGc	0	
SH3BP5L	80851		GRCh37	1	249106461	249106461	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_068																					ENST00000366472.5:c.820C>T	p.Arg274Trp	p.R274W	ENST00000366472	NM_030645.1	274	Cgg/Tgg	0	
HECW2	57520		GRCh37	2	197066030	197066030	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_068																					ENST00000260983.3:c.4690G>A	p.Glu1564Lys	p.E1564K	ENST00000260983	NM_020760.1	1564	Gaa/Aaa	0	
VIPR1	7433		GRCh37	3	42568963	42568963	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_068																					ENST00000325123.4:c.478G>A	p.Ala160Thr	p.A160T	ENST00000325123	NM_001251885.1	160	Gcc/Acc	0	
PCDHGB7	56099		GRCh37	5	140797454	140797454	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_068																					ENST00000398594.2:c.28C>T	p.Arg10Trp	p.R10W	ENST00000398594	NM_018927.3	10	Cgg/Tgg	0	
ZFP62	643836		GRCh37	5	180278376	180278376	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_068																					ENST00000502412.1:c.119G>C	p.Gly40Ala	p.G40A	ENST00000502412	NM_001172638.1	40	gGt/gCt	0	
SLC25A27	9481		GRCh37	6	46630219	46630219	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_068																					ENST00000371347.5:c.490G>A	p.Glu164Lys	p.E164K	ENST00000371347	NM_004277.4	164	Gaa/Aaa	0	
COL12A1	1303		GRCh37	6	75899390	75899390	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_068																					ENST00000322507.8:c.536T>G	p.Val179Gly	p.V179G	ENST00000322507	NM_004370.5	179	gTt/gGt	0	
ZNF425	155054		GRCh37	7	148800990	148800990	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_068																					ENST00000378061.2:c.1973G>A	p.Arg658Gln	p.R658Q	ENST00000378061	NM_001001661.2	658	cGa/cAa	0	
AHNAK2	113146		GRCh37	14	105406456	105406456	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_068																					ENST00000333244.5:c.15332T>C	p.Val5111Ala	p.V5111A	ENST00000333244	NM_138420.2	5111	gTg/gCg	0	
SPTBN5	51332		GRCh37	15	42147027	42147027	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_068																					ENST00000320955.6:c.9571G>C	p.Glu3191Gln	p.E3191Q	ENST00000320955	NM_016642.3	3191	Gag/Cag	0	
OR2C1	4993		GRCh37	16	3406004	3406004	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_068																					ENST00000304936.2:c.64C>T	p.Gln22Ter	p.Q22*	ENST00000304936	NM_012368.2	22	Cag/Tag	0	
ZNF157	7712		GRCh37	X	47272073	47272073	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_068																					ENST00000377073.3:c.601G>C	p.Ala201Pro	p.A201P	ENST00000377073	NM_003446.3	201	Gca/Cca	0	
PDE1A	5136		GRCh37	2	183070730	183070730	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_105																					ENST00000410103.1:c.887C>T	p.Ala296Val	p.A296V	ENST00000410103	NM_001003683.2	296	gCt/gTt	0	
CCDC28A	25901		GRCh37	6	139095017	139095017	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_105																					ENST00000332797.6:c.206G>C	p.Gly69Ala	p.G69A	ENST00000332797	NM_015439.2	69	gGc/gCc	0	
TECPR1	25851		GRCh37	7	97862871	97862871	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_105																					ENST00000447648.2:c.1534C>A	p.Leu512Ile	p.L512I	ENST00000447648	NM_015395.2	512	Ctc/Atc	0	
FEZ1	9638		GRCh37	11	125322245	125322245	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_105																					ENST00000278919.3:c.1081C>T	p.Gln361Ter	p.Q361*	ENST00000278919	NM_005103.4	361	Cag/Tag	0	
TBX3	6926		GRCh37	12	115117438	115117438	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_105																					ENST00000257566.3:c.736C>G	p.His246Asp	p.H246D	ENST00000257566	NM_016569.3	246	Cac/Gac	0	
TGDS	23483		GRCh37	13	95231020	95231020	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_105																					ENST00000261296.5:c.623C>T	p.Pro208Leu	p.P208L	ENST00000261296	NM_014305.2	208	cCa/cTa	0	
PLCB1	23236		GRCh37	20	8696952	8696952	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_105																					ENST00000338037.6:c.1292T>A	p.Ile431Asn	p.I431N	ENST00000338037	NM_015192.3	431	aTc/aAc	0	
UMODL1	89766		GRCh37	21	43547240	43547240	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_105																					ENST00000408910.2:c.3418G>A	p.Glu1140Lys	p.E1140K	ENST00000408910	NM_001004416.2	1140	Gaa/Aaa	0	
TNFRSF8	943		GRCh37	1	12164553	12164553	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000263932.2:c.386C>T	p.Ser129Phe	p.S129F	ENST00000263932	NM_001243.3	129	tCt/tTt	0	
OSCP1	127700		GRCh37	1	36887792	36887792	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_088																					ENST00000356637.5:c.808C>A	p.His270Asn	p.H270N	ENST00000356637		270	Cat/Aat	0	
FOXO6	100132074		GRCh37	1	41847499	41847499	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000372591.1:c.626G>A	p.Arg209Gln	p.R209Q	ENST00000372591		209	cGa/cAa	0	
WDR65			GRCh37	1	43675438	43675438	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_088																					ENST00000372492.4:c.1780G>C	p.Asp594His	p.D594H	ENST00000372492	NM_001195831.2	594	Gat/Cat	0	
EFCAB14	9813		GRCh37	1	47173712	47173712	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000371933.3:c.346C>T	p.Gln116Ter	p.Q116*	ENST00000371933	NM_014774.2	116	Cag/Tag	0	
TAL1	6886		GRCh37	1	47691405	47691405	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_088																					ENST00000294339.3:c.156C>G	p.Ile52Met	p.I52M	ENST00000294339	NM_003189.2	52	atC/atG	0	
PRPF38B	55119		GRCh37	1	109242506	109242506	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_088																					ENST00000370025.4:c.1505G>C	p.Arg502Thr	p.R502T	ENST00000370025	NM_018061.2	502	aGa/aCa	0	
HIST2H3D	653604		GRCh37	1	149785205	149785205	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000331491.1:c.32C>T	p.Ser11Leu	p.S11L	ENST00000331491	NM_001123375.2	11	tCg/tTg	0	
FLAD1	80308		GRCh37	1	154956264	154956264	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000292180.3:c.94G>A	p.Glu32Lys	p.E32K	ENST00000292180	NM_025207.4	32	Gaa/Aaa	0	
IGSF9	57549		GRCh37	1	159897211	159897211	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000368094.1:c.3464G>A	p.Arg1155His	p.R1155H	ENST00000368094	NM_001135050.1	1155	cGc/cAc	0	
ATP1A2	477		GRCh37	1	160093095	160093095	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_088																					ENST00000361216.3:c.270C>G	p.Phe90Leu	p.F90L	ENST00000361216	NM_000702.3	90	ttC/ttG	0	
SELE	6401		GRCh37	1	169696934	169696934	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000333360.7:c.1414C>T	p.Gln472Ter	p.Q472*	ENST00000333360	NM_000450.2	472	Caa/Taa	0	
SMG7	9887		GRCh37	1	183516377	183516377	+	intron_variant	Intron	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000347615.2:c.2742+905G>A		p.*914*	ENST00000347615	NM_173156.2			0	
CFH	3075		GRCh37	1	196684806	196684806	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000367429.4:c.1603G>A	p.Glu535Lys	p.E535K	ENST00000367429	NM_000186.3	535	Gaa/Aaa	0	
ASPM	259266		GRCh37	1	197074108	197074108	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000367409.4:c.4273C>T	p.Leu1425Phe	p.L1425F	ENST00000367409	NM_018136.4	1425	Ctt/Ttt	0	
KDM5B	10765		GRCh37	1	202719857	202719857	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_088																					ENST00000367265.3:c.1751G>C	p.Arg584Thr	p.R584T	ENST00000367265	NM_006618.3	584	aGa/aCa	0	
LRRN2	10446		GRCh37	1	204589027	204589027	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000367175.1:c.94C>T	p.Gln32Ter	p.Q32*	ENST00000367175		32	Cag/Tag	0	
WDR26	80232		GRCh37	1	224586711	224586711	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000414423.2:c.1445C>T	p.Ser482Phe	p.S482F	ENST00000414423	NM_001115113.2	482	tCc/tTc	0	
OR2W3	343171		GRCh37	1	248059118	248059118	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000360358.3:c.230C>T	p.Ser77Phe	p.S77F	ENST00000360358	NM_001001957.2	77	tCc/tTc	0	
ST3GAL5	8869		GRCh37	2	86071600	86071600	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_088																					ENST00000377332.3:c.927G>C	p.Leu309Phe	p.L309F	ENST00000377332	NM_003896.3	309	ttG/ttC	0	
KANSL3	55683		GRCh37	2	97278575	97278575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000431828.1:c.892C>T	p.Gln298Ter	p.Q298*	ENST00000431828		298	Cag/Tag	0	
NEB	4703		GRCh37	2	152355853	152355853	+	intron_variant	Intron	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000172853.10:c.18826-2971G>A		p.*6276*	ENST00000172853				0	
PKP4	8502		GRCh37	2	159459605	159459605	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000389759.3:c.269G>A	p.Trp90Ter	p.W90*	ENST00000389759	NM_003628.3	90	tGg/tAg	0	
TTN	7273		GRCh37	2	179449472	179449472	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_088																					ENST00000591111.1:c.59973C>A	p.Phe19991Leu	p.F19991L	ENST00000591111		19991	ttC/ttA	0	
ITGA4	3676		GRCh37	2	182339728	182339728	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000397033.2:c.361G>A	p.Glu121Lys	p.E121K	ENST00000397033	NM_000885.4	121	Gag/Aag	0	
SMARCAL1	50485		GRCh37	2	217341847	217341847	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000357276.4:c.2443G>A	p.Glu815Lys	p.E815K	ENST00000357276	NM_014140.3	815	Gag/Aag	0	
SP110	3431		GRCh37	2	231037635	231037635	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_088																					ENST00000358662.4:c.1631G>T	p.Gly544Val	p.G544V	ENST00000358662	NM_004509.3	544	gGa/gTa	0	
MYD88	4615		GRCh37	3	38180171	38180171	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000396334.3:c.19G>A	p.Glu7Lys	p.E7K	ENST00000396334	NM_002468.4	7	Gag/Aag	0	
ZNF445	353274		GRCh37	3	44489299	44489299	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_088																					ENST00000396077.2:c.1864G>T	p.Glu622Ter	p.E622*	ENST00000396077	NM_181489.5	622	Gag/Tag	0	
SETD2	29072		GRCh37	3	47164837	47164837	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_088																					ENST00000409792.3:c.1289C>G	p.Ser430Cys	p.S430C	ENST00000409792	NM_014159.6	430	tCt/tGt	0	
KY	339855		GRCh37	3	134346630	134346630	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_088																					ENST00000423778.2:c.368G>C	p.Arg123Thr	p.R123T	ENST00000423778	NM_178554.4	123	aGa/aCa	0	
POLR2H	5437		GRCh37	3	184082983	184082983	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000456318.1:c.220G>A	p.Glu74Lys	p.E74K	ENST00000456318		74	Gaa/Aaa	0	
ZFYVE28	57732		GRCh37	4	2337488	2337488	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_088																					ENST00000290974.2:c.645G>C	p.Met215Ile	p.M215I	ENST00000290974	NM_020972.2	215	atG/atC	0	
ADD1	118		GRCh37	4	2877784	2877784	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_088																					ENST00000398129.1:c.142G>T	p.Asp48Tyr	p.D48Y	ENST00000398129		48	Gac/Tac	0	
GRK4	2868		GRCh37	4	3042351	3042351	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			brca_smc_2018_BB01_088																					ENST00000398052.4:c.1736G>C	p.Ter579SerextTer27	p.*579Sext*27	ENST00000398052	NM_182982.2	579	tGa/tCa	0	
HERC3	8916		GRCh37	4	89601362	89601362	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000264345.3:c.2315C>T	p.Ser772Leu	p.S772L	ENST00000264345		772	tCa/tTa	0	
KIAA1109	84162		GRCh37	4	123192676	123192676	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_088																					ENST00000264501.4:c.7997C>G	p.Ser2666Ter	p.S2666*	ENST00000264501		2666	tCa/tGa	0	
SFRP2	6423		GRCh37	4	154709736	154709736	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000274063.4:c.252G>A	p.Met84Ile	p.M84I	ENST00000274063	NM_003013.2	84	atG/atA	0	
TENM3	55714		GRCh37	4	183609378	183609378	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000511685.1:c.2095G>A	p.Glu699Lys	p.E699K	ENST00000511685		699	Gaa/Aaa	0	
EDIL3	10085		GRCh37	5	83356295	83356295	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_088																					ENST00000296591.5:c.961G>C	p.Glu321Gln	p.E321Q	ENST00000296591	NM_005711.4	321	Gag/Cag	0	
DNAJC18	202052		GRCh37	5	138773120	138773120	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_088																					ENST00000302060.5:c.168G>C	p.Gln56His	p.Q56H	ENST00000302060	NM_152686.3	56	caG/caC	0	
GPR151	134391		GRCh37	5	145895479	145895479	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000311104.2:c.198G>A	p.Trp66Ter	p.W66*	ENST00000311104	NM_194251.2	66	tgG/tgA	0	
FGF18	8817		GRCh37	5	170876230	170876230	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_088																					ENST00000274625.5:c.330G>C	p.Met110Ile	p.M110I	ENST00000274625	NM_003862.2	110	atG/atC	0	
CTB-78H18.1			GRCh37	5	171201366	171201366	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_088																					ENST00000524175.1:c.157G>T	p.Glu53Ter	p.E53*	ENST00000524175		53	Gag/Tag	0	
ZNF391	346157		GRCh37	6	27368951	27368951	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_088																					ENST00000244576.4:c.802C>G	p.Gln268Glu	p.Q268E	ENST00000244576	NM_001076781.1	268	Cag/Gag	0	
DNAH8	1769		GRCh37	6	38793947	38793947	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_088																					ENST00000359357.3:c.3212C>A	p.Ala1071Asp	p.A1071D	ENST00000359357		1071	gCc/gAc	0	
PPP2R5D	5528		GRCh37	6	42974714	42974714	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_088																					ENST00000485511.1:c.388G>C	p.Asp130His	p.D130H	ENST00000485511	NM_001270476.1	130	Gac/Cac	0	
EYS	346007		GRCh37	6	65149143	65149143	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000370616.2:c.5747C>T	p.Ser1916Phe	p.S1916F	ENST00000370616		1916	tCc/tTc	0	
GPRC6A	222545		GRCh37	6	117127850	117127850	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000310357.3:c.1018C>T	p.Leu340Phe	p.L340F	ENST00000310357	NM_148963.2	340	Ctt/Ttt	0	
SYNE1	23345		GRCh37	6	152722470	152722470	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000367255.5:c.6832G>A	p.Glu2278Lys	p.E2278K	ENST00000367255	NM_182961.3	2278	Gaa/Aaa	0	
SNX9	51429		GRCh37	6	158359674	158359674	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_088																					ENST00000392185.3:c.1543G>C	p.Glu515Gln	p.E515Q	ENST00000392185	NM_016224.4	515	Gaa/Caa	0	
LPA	4018		GRCh37	6	160969590	160969590	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000316300.5:c.5075G>A	p.Arg1692Gln	p.R1692Q	ENST00000316300		1692	cGa/cAa	0	
SDK1	221935		GRCh37	7	4116637	4116637	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_088																					ENST00000404826.2:c.3018G>C	p.Gln1006His	p.Q1006H	ENST00000404826	NM_152744.3	1006	caG/caC	0	
HOXA10	3206		GRCh37	7	27213864	27213864	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000283921.4:c.62C>T	p.Ser21Leu	p.S21L	ENST00000283921	NM_018951.3	21	tCg/tTg	0	
C7orf72			GRCh37	7	50198697	50198697	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000297001.6:c.1249C>T	p.Arg417Ter	p.R417*	ENST00000297001	NM_001161834.2	417	Cga/Tga	0	
GUSB	2990		GRCh37	7	65444483	65444483	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_088																					ENST00000304895.4:c.627C>G	p.Phe209Leu	p.F209L	ENST00000304895	NM_000181.3	209	ttC/ttG	0	
CHPF2	54480		GRCh37	7	150932330	150932330	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000035307.2:c.460G>A	p.Glu154Lys	p.E154K	ENST00000035307	NM_019015.1	154	Gag/Aag	0	
CDCA2	157313		GRCh37	8	25327484	25327484	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000330560.3:c.808G>A	p.Glu270Lys	p.E270K	ENST00000330560	NM_152562.2	270	Gag/Aag	0	
RAB11FIP1	80223		GRCh37	8	37732367	37732367	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_088																					ENST00000330843.4:c.1288G>C	p.Glu430Gln	p.E430Q	ENST00000330843	NM_001002814.2	430	Gag/Cag	0	
C8orf47			GRCh37	8	99101930	99101930	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_088																					ENST00000318528.3:c.685G>C	p.Glu229Gln	p.E229Q	ENST00000318528	NM_173549.2	229	Gaa/Caa	0	
CYHR1	50626		GRCh37	8	145676037	145676037	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000438911.2:c.814G>A	p.Glu272Lys	p.E272K	ENST00000438911	NM_138496.1	272	Gag/Aag	0	
TTF1	7270		GRCh37	9	135275557	135275557	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000334270.2:c.1456G>A	p.Asp486Asn	p.D486N	ENST00000334270	NM_001205296.1	486	Gat/Aat	0	
MLLT10	8028		GRCh37	10	21962498	21962498	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000307729.7:c.1271C>T	p.Ser424Leu	p.S424L	ENST00000307729		424	tCa/tTa	0	
CYP26A1	1592		GRCh37	10	94834082	94834082	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_088																					ENST00000224356.4:c.207G>C	p.Gln69His	p.Q69H	ENST00000224356	NM_000783.3	69	caG/caC	0	
APLNR	187		GRCh37	11	57003543	57003543	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_088																					ENST00000257254.3:c.936C>A	p.Phe312Leu	p.F312L	ENST00000257254		312	ttC/ttA	0	
SLC43A3	29015		GRCh37	11	57176678	57176678	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_088																					ENST00000352187.1:c.1341C>G	p.Ile447Met	p.I447M	ENST00000352187	NM_017611.2	447	atC/atG	0	
NAALADL1	10004		GRCh37	11	64815632	64815632	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000358658.3:c.1340C>T	p.Ser447Leu	p.S447L	ENST00000358658	NM_005468.2	447	tCg/tTg	0	
SIPA1	6494		GRCh37	11	65418173	65418173	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000394224.3:c.3116C>T	p.Ala1039Val	p.A1039V	ENST00000394224	NM_153253.29	1039	gCc/gTc	0	
NPAS4	266743		GRCh37	11	66189632	66189632	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000311034.2:c.217G>A	p.Glu73Lys	p.E73K	ENST00000311034	NM_178864.3	73	Gag/Aag	0	
WNT11	7481		GRCh37	11	75902813	75902813	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000322563.3:c.685G>A	p.Glu229Lys	p.E229K	ENST00000322563	NM_004626.2	229	Gag/Aag	0	
PICALM	8301		GRCh37	11	85692953	85692953	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_088																					ENST00000393346.3:c.1610C>G	p.Ser537Cys	p.S537C	ENST00000393346		537	tCt/tGt	0	
GRIA4	2893		GRCh37	11	105481786	105481786	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_088																					ENST00000282499.5:c.62G>C	p.Gly21Ala	p.G21A	ENST00000282499	NM_000829.3	21	gGa/gCa	0	
VWA5A	4013		GRCh37	11	124012347	124012347	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000392748.1:c.1922C>T	p.Ser641Phe	p.S641F	ENST00000392748	NM_014622.4	641	tCt/tTt	0	
STAT6	6778		GRCh37	12	57501425	57501425	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_088																					ENST00000300134.3:c.218A>T	p.Glu73Val	p.E73V	ENST00000300134	NM_001178078.1	73	gAg/gTg	0	
GALNT4	8693		GRCh37	12	89917585	89917585	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000529983.2:c.742G>A	p.Glu248Lys	p.E248K	ENST00000529983	NM_003774.4	248	Gaa/Aaa	0	
FBXO21	23014		GRCh37	12	117593703	117593703	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_088																					ENST00000330622.5:c.1589G>T	p.Gly530Val	p.G530V	ENST00000330622		530	gGa/gTa	0	
GCN1L1			GRCh37	12	120587479	120587479	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000300648.6:c.4477C>T	p.His1493Tyr	p.H1493Y	ENST00000300648	NM_006836.1	1493	Cac/Tac	0	
ZNF84	7637		GRCh37	12	133635220	133635220	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000327668.7:c.1919C>T	p.Ser640Leu	p.S640L	ENST00000327668		640	tCa/tTa	0	
NUPL1			GRCh37	13	25899142	25899142	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000381736.3:c.967G>A	p.Glu323Lys	p.E323K	ENST00000381736	NM_014089.3	323	Gaa/Aaa	0	
ATP8A2	51761		GRCh37	13	26402315	26402315	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_088																					ENST00000381655.2:c.2739C>G	p.Ile913Met	p.I913M	ENST00000381655	NM_016529.4	913	atC/atG	0	
DNAL1	83544		GRCh37	14	74162634	74162634	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_088																					ENST00000553645.2:c.562G>T	p.Glu188Ter	p.E188*	ENST00000553645	NM_031427.3	188	Gaa/Taa	0	
ESRRB	2103		GRCh37	14	76957927	76957927	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000380887.2:c.925G>A	p.Glu309Lys	p.E309K	ENST00000380887		309	Gag/Aag	0	
SYNE3	161176		GRCh37	14	95905992	95905992	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_088																					ENST00000334258.5:c.2203G>C	p.Glu735Gln	p.E735Q	ENST00000334258	NM_152592.3	735	Gag/Cag	0	
AK7	122481		GRCh37	14	96944948	96944948	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000267584.4:c.1702G>A	p.Glu568Lys	p.E568K	ENST00000267584	NM_152327.3	568	Gag/Aag	0	
ASPG	374569		GRCh37	14	104575627	104575627	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000551177.1:c.1495G>A	p.Glu499Lys	p.E499K	ENST00000551177	NM_001080464.2	499	Gag/Aag	0	
ZBTB42	100128927		GRCh37	14	105267817	105267817	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000342537.7:c.283G>A	p.Val95Met	p.V95M	ENST00000342537	NM_001137601.1	95	Gtg/Atg	0	
UNC13C	440279		GRCh37	15	54306514	54306514	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000260323.11:c.1414G>A	p.Glu472Lys	p.E472K	ENST00000260323	NM_001080534.1	472	Gag/Aag	0	
RAB11FIP3	9727		GRCh37	16	532610	532610	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000262305.4:c.989C>T	p.Thr330Ile	p.T330I	ENST00000262305	NM_014700.3	330	aCc/aTc	0	
MYH11	4629		GRCh37	16	15850341	15850341	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000300036.5:c.1606G>A	p.Asp536Asn	p.D536N	ENST00000300036	NM_002474.2	536	Gac/Aac	0	
SPATA2L	124044		GRCh37	16	89767592	89767592	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000289805.5:c.49G>A	p.Glu17Lys	p.E17K	ENST00000289805	NM_152339.3	17	Gag/Aag	0	
TP53	7157		GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag	0	
ACACA	31		GRCh37	17	35506823	35506823	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000353139.5:c.5644C>T	p.His1882Tyr	p.H1882Y	ENST00000353139	NM_198834.1	1882	Cac/Tac	0	
HOXB5	3215		GRCh37	17	46670662	46670662	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000239151.5:c.383C>T	p.Ala128Val	p.A128V	ENST00000239151	NM_002147.3	128	gCc/gTc	0	
SCPEP1	59342		GRCh37	17	55079474	55079474	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000262288.3:c.1228G>A	p.Glu410Lys	p.E410K	ENST00000262288	NM_021626.2	410	Gaa/Aaa	0	
RNF157	114804		GRCh37	17	74150391	74150391	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000269391.6:c.1783G>A	p.Glu595Lys	p.E595K	ENST00000269391	NM_052916.2	595	Gaa/Aaa	0	
CCDC40	55036		GRCh37	17	78061528	78061528	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_088																					ENST00000397545.4:c.2572G>C	p.Glu858Gln	p.E858Q	ENST00000397545	NM_017950.3	858	Gag/Cag	0	
APCDD1	147495		GRCh37	18	10454991	10454991	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000355285.5:c.13C>T	p.Arg5Cys	p.R5C	ENST00000355285	NM_153000.4	5	Cgc/Tgc	0	
AC012123.1			GRCh37	18	30352158	30352158	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_088																					ENST00000426194.1:c.455C>G	p.Ser152Ter	p.S152*	ENST00000426194		152	tCa/tGa	0	
MKNK2	2872		GRCh37	19	2039818	2039818	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000250896.3:c.1192G>A	p.Glu398Lys	p.E398K	ENST00000250896	NM_199054.2	398	Gag/Aag	0	
SLC25A23	79085		GRCh37	19	6454426	6454426	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000301454.4:c.703G>A	p.Glu235Lys	p.E235K	ENST00000301454	NM_024103.2	235	Gag/Aag	0	
VAV1	7409		GRCh37	19	6853034	6853034	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_088																					ENST00000602142.1:c.2276C>G	p.Thr759Ser	p.T759S	ENST00000602142	NM_005428.3	759	aCc/aGc	0	
ARHGEF18	23370		GRCh37	19	7533863	7533863	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_088																					ENST00000359920.6:c.3069G>C	p.Lys1023Asn	p.K1023N	ENST00000359920	NM_001130955.1	1023	aaG/aaC	0	
MUC16	94025		GRCh37	19	9073400	9073400	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_088																					ENST00000397910.4:c.14046G>C	p.Gln4682His	p.Q4682H	ENST00000397910	NM_024690.2	4682	caG/caC	0	
ANO8	57719		GRCh37	19	17438369	17438369	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_088																					ENST00000159087.4:c.2428G>C	p.Glu810Gln	p.E810Q	ENST00000159087	NM_020959.2	810	Gag/Cag	0	
ZNF99	7652		GRCh37	19	22940558	22940558	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_088																					ENST00000596209.1:c.2153C>A	p.Ser718Ter	p.S718*	ENST00000596209	NM_001080409.2	718	tCa/tAa	0	
ZNF536	9745		GRCh37	19	31039620	31039620	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_088																					ENST00000355537.3:c.3094G>C	p.Asp1032His	p.D1032H	ENST00000355537	NM_014717.1	1032	Gat/Cat	0	
DHX34	9704		GRCh37	19	47856376	47856376	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000328771.4:c.89G>A	p.Trp30Ter	p.W30*	ENST00000328771	NM_014681.5	30	tGg/tAg	0	
MYBPC2	4606		GRCh37	19	50958811	50958811	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000357701.5:c.2248G>A	p.Asp750Asn	p.D750N	ENST00000357701	NM_004533.3	750	Gac/Aac	0	
ZSCAN4	201516		GRCh37	19	58190075	58190075	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_088																					ENST00000318203.5:c.1104C>A	p.Phe368Leu	p.F368L	ENST00000318203	NM_152677.2	368	ttC/ttA	0	
BPIFB3	359710		GRCh37	20	31654661	31654661	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_088																					ENST00000375494.3:c.956A>T	p.Asp319Val	p.D319V	ENST00000375494	NM_182658.1	319	gAc/gTc	0	
ACTR5	79913		GRCh37	20	37400389	37400389	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000243903.4:c.1754G>A	p.Arg585His	p.R585H	ENST00000243903	NM_024855.3	585	cGc/cAc	0	
NCOA3	8202		GRCh37	20	46276087	46276087	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000371998.3:c.3523C>T	p.Gln1175Ter	p.Q1175*	ENST00000371998		1175	Cag/Tag	0	
LCA5L	150082		GRCh37	21	40777830	40777830	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_088																					ENST00000288350.3:c.1991G>T	p.Gly664Val	p.G664V	ENST00000288350		664	gGa/gTa	0	
SLC35A2	7355		GRCh37	X	48762692	48762692	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_088																					ENST00000247138.5:c.494C>T	p.Ser165Phe	p.S165F	ENST00000247138	NM_005660.1	165	tCc/tTc	0	
AR	367		GRCh37	X	66931471	66931471	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_088																					ENST00000374690.3:c.2113C>G	p.Leu705Val	p.L705V	ENST00000374690	NM_000044.3	705	Ctc/Gtc	0	
GPR119	139760		GRCh37	X	129519232	129519232	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_088																					ENST00000276218.2:c.190G>A	p.Asp64Asn	p.D64N	ENST00000276218	NM_178471.2	64	Gac/Aac	0	
APOB	338		GRCh37	2	21225150	21225150	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR391																					ENST00000233242.1:c.13144A>T	p.Met4382Leu	p.M4382L	ENST00000233242	NM_000384.2	4382	Atg/Ttg	0	
ATAD2B	54454		GRCh37	2	24092555	24092555	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR391																					ENST00000238789.5:c.1054A>T	p.Ser352Cys	p.S352C	ENST00000238789	NM_001242338.1	352	Agc/Tgc	0	
GALNT13	114805		GRCh37	2	154801102	154801102	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR391																					ENST00000392825.3:c.92G>T	p.Cys31Phe	p.C31F	ENST00000392825	NM_052917.2	31	tGt/tTt	0	
MREG	55686		GRCh37	2	216877986	216877986	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR391																					ENST00000263268.6:c.65G>A	p.Arg22His	p.R22H	ENST00000263268	NM_018000.2	22	cGc/cAc	0	
NYAP2	57624		GRCh37	2	226273789	226273789	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR391																					ENST00000272907.6:c.193C>T	p.Arg65Cys	p.R65C	ENST00000272907	NM_020864.1	65	Cgc/Tgc	0	
RFX6	222546		GRCh37	6	117248259	117248259	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR391																					ENST00000332958.2:c.1955G>A	p.Arg652Gln	p.R652Q	ENST00000332958	NM_173560.3	652	cGa/cAa	0	
CBLL1	79872		GRCh37	7	107389424	107389424	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR391																					ENST00000440859.3:c.113C>G	p.Ala38Gly	p.A38G	ENST00000440859	NM_024814.2	38	gCg/gGg	0	
NAPRT1			GRCh37	8	144660397	144660397	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR391																					ENST00000449291.2:c.92G>A	p.Arg31His	p.R31H	ENST00000449291		31	cGc/cAc	0	
ZNF280D	54816		GRCh37	15	56924109	56924109	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR391																					ENST00000267807.7:c.2527C>T	p.Gln843Ter	p.Q843*	ENST00000267807	NM_017661.2	843	Caa/Taa	0	
TP53	7157		GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR391																					ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc	0	
CLTC	1213		GRCh37	17	57737800	57737800	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR391																					ENST00000269122.3:c.1018A>T	p.Asn340Tyr	p.N340Y	ENST00000269122	NM_004859.3	340	Aat/Tat	0	
GREB1L	80000		GRCh37	18	19080516	19080516	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR391																					ENST00000424526.1:c.3985T>A	p.Ser1329Thr	p.S1329T	ENST00000424526	NM_001142966.1	1329	Tcc/Acc	0	
MUC16	94025		GRCh37	19	9066669	9066669	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR391																					ENST00000397910.4:c.20777C>A	p.Thr6926Lys	p.T6926K	ENST00000397910	NM_024690.2	6926	aCa/aAa	0	
ATF5	22809		GRCh37	19	50434199	50434199	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR391																					ENST00000423777.2:c.92C>G	p.Pro31Arg	p.P31R	ENST00000423777	NM_001193646.1	31	cCc/cGc	0	
ARFGEF2	10564		GRCh37	20	47605122	47605122	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR391																					ENST00000371917.4:c.2456A>G	p.Tyr819Cys	p.Y819C	ENST00000371917	NM_006420.2	819	tAt/tGt	0	
NHS	4810		GRCh37	X	17705907	17705907	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR391																					ENST00000380060.3:c.611G>A	p.Arg204His	p.R204H	ENST00000380060	NM_198270.2	204	cGc/cAc	0	
NR0B1	190		GRCh37	X	30327083	30327083	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR391																					ENST00000378970.4:c.398G>C	p.Cys133Ser	p.C133S	ENST00000378970	NM_000475.4	133	tGc/tCc	0	
DLG3	1741		GRCh37	X	69669655	69669655	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR391																					ENST00000374360.3:c.649C>T	p.Arg217Ter	p.R217*	ENST00000374360	NM_021120.3	217	Cga/Tga	0	
TEX11	56159		GRCh37	X	69849537	69849537	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BR391																					ENST00000344304.3:c.1577C>G	p.Ser526Ter	p.S526*	ENST00000344304		526	tCa/tGa	0	
RLIM	51132		GRCh37	X	73812477	73812477	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR391																					ENST00000332687.6:c.673G>A	p.Ala225Thr	p.A225T	ENST00000332687	NM_016120.3	225	Gct/Act	0	
NBPF10	100132406		GRCh37	1	145323696	145323696	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR413																					ENST00000342960.5:c.3533C>A	p.Pro1178Gln	p.P1178Q	ENST00000342960	NM_001039703.5	1178	cCa/cAa	0	
DENND1B	163486		GRCh37	1	197479958	197479958	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR413																					ENST00000391979.2:c.880A>G	p.Ser294Gly	p.S294G	ENST00000391979	NM_001195215.1	294	Agt/Ggt	0	
IQCA1	79781		GRCh37	2	237396730	237396730	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR413																					ENST00000409907.3:c.561C>G	p.Ile187Met	p.I187M	ENST00000409907	NM_024726.4	187	atC/atG	0	
CCR1	1230		GRCh37	3	46245804	46245804	+	start_lost	Translation_Start_Site	SNP	T	T	A			brca_smc_2018_BR413																					ENST00000296140.3:c.1A>T	p.Met1?	p.M1?	ENST00000296140	NM_001295.2	1	Atg/Ttg	0	
NISCH	11188		GRCh37	3	52526412	52526412	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR413																					ENST00000345716.4:c.4429G>C	p.Glu1477Gln	p.E1477Q	ENST00000345716	NM_007184.3	1477	Gag/Cag	0	
TAC1	6863		GRCh37	7	97362016	97362016	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR413																					ENST00000319273.5:c.92G>A	p.Trp31Ter	p.W31*	ENST00000319273	NM_003182.2	31	tGg/tAg	0	
KANK1	23189		GRCh37	9	713124	713124	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR413																					ENST00000382297.2:c.2358G>C	p.Leu786Phe	p.L786F	ENST00000382297	NM_001256877.1	786	ttG/ttC	0	
GAD2	2572		GRCh37	10	26508116	26508116	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR413																					ENST00000259271.3:c.431A>C	p.Glu144Ala	p.E144A	ENST00000259271	NM_000818.2	144	gAa/gCa	0	
NXF1	10482		GRCh37	11	62571442	62571442	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR413																					ENST00000294172.2:c.37G>C	p.Asp13His	p.D13H	ENST00000294172	NM_006362.4	13	Gat/Cat	0	
LRP1	4035		GRCh37	12	57572679	57572679	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR413																					ENST00000243077.3:c.4613A>G	p.Asn1538Ser	p.N1538S	ENST00000243077	NM_002332.2	1538	aAt/aGt	0	
ACACB	32		GRCh37	12	109673175	109673175	+	splice_donor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BR413																					ENST00000338432.7:c.4404+1G>C		p.X1468_splice	ENST00000338432		1468		0	
PSMD9	5715		GRCh37	12	122341012	122341012	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR413																					ENST00000541212.1:c.554G>C	p.Gly185Ala	p.G185A	ENST00000541212		185	gGg/gCg	0	
RIMBP2	23504		GRCh37	12	130921778	130921778	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR413																					ENST00000261655.4:c.1664G>A	p.Arg555Gln	p.R555Q	ENST00000261655	NM_015347.4	555	cGg/cAg	0	
ZNF174	7727		GRCh37	16	3452207	3452207	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR413																					ENST00000268655.4:c.203G>A	p.Arg68Gln	p.R68Q	ENST00000268655	NM_003450.2	68	cGa/cAa	0	
KIAA0100	9703		GRCh37	17	26969914	26969914	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR413																					ENST00000528896.2:c.488G>A	p.Arg163Lys	p.R163K	ENST00000528896	NM_014680.3	163	aGa/aAa	0	
DHRS11	79154		GRCh37	17	34951576	34951576	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BR413																					ENST00000251312.5:c.323C>G	p.Ser108Ter	p.S108*	ENST00000251312	NM_024308.3	108	tCa/tGa	0	
MAP3K3	4215		GRCh37	17	61769157	61769157	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR413																					ENST00000361733.3:c.1409C>T	p.Thr470Met	p.T470M	ENST00000361733	NM_002401.3	470	aCg/aTg	0	
KIAA1468			GRCh37	18	59855106	59855106	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR413																					ENST00000398130.2:c.368A>G	p.Glu123Gly	p.E123G	ENST00000398130	NM_020854.3	123	gAg/gGg	0	
ZNF493	284443		GRCh37	19	21606641	21606641	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR413																					ENST00000355504.4:c.796A>G	p.Lys266Glu	p.K266E	ENST00000355504	NM_175910.6	266	Aaa/Gaa	0	
LTBP4	8425		GRCh37	19	41116473	41116473	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR413																					ENST00000308370.7:c.1921G>C	p.Asp641His	p.D641H	ENST00000308370	NM_001042544.1	641	Gac/Cac	0	
ZNF404	342908		GRCh37	19	44377334	44377334	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR413																					ENST00000587539.1:c.1032A>T	p.Lys344Asn	p.K344N	ENST00000587539	NM_001033719.2	344	aaA/aaT	0	
DOCK11	139818		GRCh37	X	117814640	117814640	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR413																					ENST00000276202.7:c.5656C>G	p.Arg1886Gly	p.R1886G	ENST00000276202	NM_144658.3	1886	Cgt/Ggt	0	
SMIM9	100132963		GRCh37	X	154058996	154058996	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR413																					ENST00000369529.1:c.136T>A	p.Ser46Thr	p.S46T	ENST00000369529	NM_001162936.1	46	Tca/Aca	0	
TNFRSF25	8718		GRCh37	1	6522109	6522109	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_062																					ENST00000356876.3:c.870G>C	p.Glu290Asp	p.E290D	ENST00000356876	NM_003790.2	290	gaG/gaC	0	
GJA9	81025		GRCh37	1	39341187	39341187	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_062																					ENST00000357771.3:c.584C>T	p.Pro195Leu	p.P195L	ENST00000357771	NM_030772.4	195	cCa/cTa	0	
COL9A2	1298		GRCh37	1	40781308	40781308	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_062																					ENST00000372748.3:c.104C>T	p.Pro35Leu	p.P35L	ENST00000372748	NM_001852.3	35	cCg/cTg	0	
TCHHL1	126637		GRCh37	1	152057805	152057805	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_062																					ENST00000368806.1:c.2353G>A	p.Asp785Asn	p.D785N	ENST00000368806	NM_001008536.1	785	Gac/Aac	0	
RRNAD1	51093		GRCh37	1	156702165	156702165	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_062																					ENST00000368216.4:c.329C>G	p.Ser110Ter	p.S110*	ENST00000368216	NM_015997.3	110	tCa/tGa	0	
C4BPB	725		GRCh37	1	207273143	207273143	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_062																					ENST00000243611.5:c.628C>T	p.Gln210Ter	p.Q210*	ENST00000243611	NM_000716.3	210	Cag/Tag	0	
SRBD1	55133		GRCh37	2	45646958	45646958	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_062																					ENST00000263736.4:c.2125G>T	p.Asp709Tyr	p.D709Y	ENST00000263736	NM_018079.4	709	Gat/Tat	0	
MTIF2	4528		GRCh37	2	55490829	55490829	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_062																					ENST00000263629.4:c.166G>A	p.Asp56Asn	p.D56N	ENST00000263629	NM_002453.2	56	Gat/Aat	0	
RPRM	56475		GRCh37	2	154335019	154335019	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_062																					ENST00000325926.3:c.61G>A	p.Glu21Lys	p.E21K	ENST00000325926	NM_019845.2	21	Gag/Aag	0	
FSIP2	401024		GRCh37	2	186664913	186664913	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_062																					ENST00000424728.1:c.10880G>A	p.Ser3627Asn	p.S3627N	ENST00000424728		3627	aGc/aAc	0	
GPR62	118442		GRCh37	3	51990465	51990465	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_062																					ENST00000322241.4:c.797C>T	p.Ala266Val	p.A266V	ENST00000322241	NM_080865.3	266	gCg/gTg	0	
RASA2	5922		GRCh37	3	141327450	141327450	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_062																					ENST00000286364.3:c.2136T>A	p.Ser712Arg	p.S712R	ENST00000286364		712	agT/agA	0	
ZNF732	654254		GRCh37	4	266255	266255	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_062																					ENST00000419098.1:c.391C>T	p.Gln131Ter	p.Q131*	ENST00000419098	NM_001137608.1	131	Caa/Taa	0	
CLGN	1047		GRCh37	4	141315179	141315179	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_062																					ENST00000325617.5:c.1166G>C	p.Arg389Pro	p.R389P	ENST00000325617	NM_004362.2	389	cGa/cCa	0	
VCAN	1462		GRCh37	5	82834788	82834788	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_062																					ENST00000265077.3:c.5966C>A	p.Pro1989His	p.P1989H	ENST00000265077	NM_004385.4	1989	cCc/cAc	0	
FNIP1	96459		GRCh37	5	131066631	131066631	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_062																					ENST00000510461.1:c.320C>T	p.Ser107Phe	p.S107F	ENST00000510461	NM_133372.2	107	tCt/tTt	0	
DEF6	50619		GRCh37	6	35278404	35278404	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_062																					ENST00000316637.5:c.406A>G	p.Ile136Val	p.I136V	ENST00000316637	NM_022047.3	136	Atc/Gtc	0	
MYB	4602		GRCh37	6	135511387	135511387	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_062																					ENST00000367814.4:c.429G>C	p.Lys143Asn	p.K143N	ENST00000367814	NM_001161659.1	143	aaG/aaC	0	
ABCA13	154664		GRCh37	7	48284290	48284290	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_062																					ENST00000435803.1:c.1380T>G	p.His460Gln	p.H460Q	ENST00000435803	NM_152701.3	460	caT/caG	0	
KMT2C	58508		GRCh37	7	151873306	151873306	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_062																					ENST00000262189.6:c.9232C>T	p.Gln3078Ter	p.Q3078*	ENST00000262189	NM_170606.2	3078	Cag/Tag	0	
FAM167A	83648		GRCh37	8	11281964	11281964	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_062																					ENST00000284486.4:c.563C>T	p.Ser188Phe	p.S188F	ENST00000284486	NM_053279.2	188	tCc/tTc	0	
ZBTB10	65986		GRCh37	8	81431136	81431136	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_062																					ENST00000430430.1:c.2257G>C	p.Asp753His	p.D753H	ENST00000430430		753	Gat/Cat	0	
SMC5	23137		GRCh37	9	72892300	72892300	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_062																					ENST00000361138.5:c.455A>T	p.Asn152Ile	p.N152I	ENST00000361138	NM_015110.3	152	aAc/aTc	0	
HABP4	22927		GRCh37	9	99227738	99227738	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_062																					ENST00000375249.4:c.632G>C	p.Arg211Thr	p.R211T	ENST00000375249	NM_014282.2	211	aGa/aCa	0	
ZNF248	57209		GRCh37	10	38120784	38120784	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_062																					ENST00000357328.4:c.1499C>T	p.Ser500Phe	p.S500F	ENST00000357328	NM_001267597.1	500	tCc/tTc	0	
GFRA1	2674		GRCh37	10	118029017	118029017	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_062																					ENST00000355422.6:c.416C>T	p.Ser139Leu	p.S139L	ENST00000355422	NM_005264.4	139	tCa/tTa	0	
DMBT1	1755		GRCh37	10	124402642	124402642	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_062																					ENST00000338354.3:c.6970G>A	p.Val2324Met	p.V2324M	ENST00000338354		2324	Gtg/Atg	0	
PDE3B	5140		GRCh37	11	14853279	14853279	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_062																					ENST00000282096.4:c.2050C>T	p.Leu684Phe	p.L684F	ENST00000282096	NM_000922.3	684	Ctt/Ttt	0	
DCDC1	341019		GRCh37	11	30937170	30937170	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_062																					ENST00000339794.5:c.778C>T	p.Gln260Ter	p.Q260*	ENST00000339794		260	Cag/Tag	0	
PDGFD	80310		GRCh37	11	103870849	103870849	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_062																					ENST00000393158.2:c.259G>A	p.Glu87Lys	p.E87K	ENST00000393158		87	Gag/Aag	0	
PHC1	1911		GRCh37	12	9089820	9089820	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_062																					ENST00000543824.1:c.2526G>A	p.Met842Ile	p.M842I	ENST00000543824		842	atG/atA	0	
NUP107	57122		GRCh37	12	69121164	69121164	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_062																					ENST00000229179.4:c.1729A>G	p.Ile577Val	p.I577V	ENST00000229179	NM_020401.2	577	Ata/Gta	0	
UBE3B	89910		GRCh37	12	109959085	109959085	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_062																					ENST00000342494.3:c.2209G>C	p.Glu737Gln	p.E737Q	ENST00000342494	NM_130466.3	737	Gag/Cag	0	
TMEM233	387890		GRCh37	12	120031735	120031735	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_062																					ENST00000426426.1:c.82G>A	p.Glu28Lys	p.E28K	ENST00000426426	NM_001136534.1	28	Gag/Aag	0	
FLT3	2322		GRCh37	13	28624273	28624273	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_062																					ENST00000241453.7:c.701G>A	p.Arg234Lys	p.R234K	ENST00000241453	NM_004119.2	234	aGa/aAa	0	
CCNA1	8900		GRCh37	13	37011920	37011920	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_062																					ENST00000255465.4:c.452C>G	p.Ser151Trp	p.S151W	ENST00000255465		151	tCg/tGg	0	
TM9SF2	9375		GRCh37	13	100153894	100153894	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_062																					ENST00000376387.4:c.34C>T	p.Arg12Trp	p.R12W	ENST00000376387	NM_004800.2	12	Cgg/Tgg	0	
CHD8	57680		GRCh37	14	21871202	21871202	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_062																					ENST00000399982.2:c.3688G>A	p.Asp1230Asn	p.D1230N	ENST00000399982	NM_001170629.1	1230	Gac/Aac	0	
ATG14	22863		GRCh37	14	55852668	55852668	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_062																					ENST00000247178.5:c.556C>T	p.His186Tyr	p.H186Y	ENST00000247178	NM_014924.4	186	Cat/Tat	0	
CETP	1071		GRCh37	16	57003847	57003847	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_062																					ENST00000200676.3:c.461G>A	p.Arg154Gln	p.R154Q	ENST00000200676	NM_000078.2	154	cGg/cAg	0	
RLTPR			GRCh37	16	67679472	67679472	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_062																					ENST00000334583.6:c.70G>C	p.Glu24Gln	p.E24Q	ENST00000334583	NM_001013838.1	24	Gag/Cag	0	
TP53	7157		GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_062																					ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg	0	
MUC16	94025		GRCh37	19	9072645	9072645	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_062																					ENST00000397910.4:c.14801C>T	p.Ser4934Phe	p.S4934F	ENST00000397910	NM_024690.2	4934	tCc/tTc	0	
ZNF536	9745		GRCh37	19	31039356	31039356	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_062																					ENST00000355537.3:c.2830C>A	p.Pro944Thr	p.P944T	ENST00000355537	NM_014717.1	944	Ccc/Acc	0	
CD22	933		GRCh37	19	35823606	35823606	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_062																					ENST00000085219.5:c.191A>G	p.Tyr64Cys	p.Y64C	ENST00000085219	NM_001771.3	64	tAt/tGt	0	
VN1R4	317703		GRCh37	19	53770761	53770761	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_062																					ENST00000311170.4:c.158A>C	p.Asn53Thr	p.N53T	ENST00000311170	NM_173857.2	53	aAc/aCc	0	
LAMA5	3911		GRCh37	20	60887009	60887009	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_062																					ENST00000252999.3:c.9602C>T	p.Pro3201Leu	p.P3201L	ENST00000252999	NM_005560.4	3201	cCc/cTc	0	
PKDREJ	10343		GRCh37	22	46656867	46656867	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_062																					ENST00000253255.5:c.2353A>T	p.Asn785Tyr	p.N785Y	ENST00000253255	NM_006071.1	785	Aat/Tat	0	
MXRA5	25878		GRCh37	X	3239410	3239410	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_062																					ENST00000217939.6:c.4316C>T	p.Ser1439Phe	p.S1439F	ENST00000217939	NM_015419.3	1439	tCt/tTt	0	
FAM47A	158724		GRCh37	X	34148784	34148784	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_062																					ENST00000346193.3:c.1612C>T	p.Arg538Cys	p.R538C	ENST00000346193	NM_203408.3	538	Cgt/Tgt	0	
F8	2157		GRCh37	X	154132639	154132639	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_062																					ENST00000360256.4:c.5747G>C	p.Arg1916Thr	p.R1916T	ENST00000360256	NM_000132.3	1916	aGa/aCa	0	
SPTA1	6708		GRCh37	1	158612286	158612286	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_125																					ENST00000368147.4:c.4652G>T	p.Arg1551Leu	p.R1551L	ENST00000368147	NM_003126.2	1551	cGa/cTa	0	
TNN	63923		GRCh37	1	175052951	175052951	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_125																					ENST00000239462.4:c.1114G>A	p.Glu372Lys	p.E372K	ENST00000239462	NM_022093.1	372	Gaa/Aaa	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_125																					ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt	0	
HOXA3	3200		GRCh37	7	27147837	27147837	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_125																					ENST00000317201.2:c.1029C>A	p.Asp343Glu	p.D343E	ENST00000317201	NM_153631.2	343	gaC/gaA	0	
JPH1	56704		GRCh37	8	75227366	75227366	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_125																					ENST00000342232.4:c.869G>T	p.Arg290Leu	p.R290L	ENST00000342232	NM_020647.2	290	cGc/cTc	0	
DEPTOR	64798		GRCh37	8	120977618	120977618	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_125																					ENST00000286234.5:c.572A>C	p.His191Pro	p.H191P	ENST00000286234	NM_022783.2	191	cAc/cCc	0	
TMEM2			GRCh37	9	74305110	74305110	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_125																					ENST00000377044.4:c.3749T>A	p.Val1250Glu	p.V1250E	ENST00000377044	NM_013390.2	1250	gTg/gAg	0	
MUC2	4583		GRCh37	11	1093204	1093204	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_125																					ENST00000441003.2:c.5023C>A	p.Pro1675Thr	p.P1675T	ENST00000441003	NM_002457.2	1675	Cca/Aca	0	
NAV2	89797		GRCh37	11	19970259	19970259	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_125																					ENST00000396087.3:c.2347A>G	p.Thr783Ala	p.T783A	ENST00000396087	NM_001244963.1	783	Acc/Gcc	0	
CHRM1	1128		GRCh37	11	62677495	62677495	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_125																					ENST00000306960.3:c.1078G>A	p.Glu360Lys	p.E360K	ENST00000306960	NM_000738.2	360	Gag/Aag	0	
DDX6	1656		GRCh37	11	118638989	118638989	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_125																					ENST00000526070.2:c.441C>G	p.Ser147Arg	p.S147R	ENST00000526070	NM_001257191.1	147	agC/agG	0	
TP53	7157		GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_125																					ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt	0	
ABCA6	23460		GRCh37	17	67082768	67082768	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_125																					ENST00000284425.2:c.3928G>C	p.Val1310Leu	p.V1310L	ENST00000284425	NM_080284.2	1310	Gtt/Ctt	0	
SSTR2	6752		GRCh37	17	71166554	71166554	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_125																					ENST00000357585.2:c.1096C>A	p.Gln366Lys	p.Q366K	ENST00000357585	NM_001050.2	366	Caa/Aaa	0	
TFCP2L1	29842		GRCh37	2	121995266	121995266	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_046																					ENST00000263707.5:c.936G>T	p.Gln312His	p.Q312H	ENST00000263707	NM_014553.2	312	caG/caT	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_046																					ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt	0	
SLIT2	9353		GRCh37	4	20555493	20555493	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_046																					ENST00000504154.1:c.2627C>T	p.Ser876Leu	p.S876L	ENST00000504154	NM_004787.1	876	tCg/tTg	0	
ADH6	130		GRCh37	4	100134787	100134787	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_046																					ENST00000237653.7:c.238G>T	p.Glu80Ter	p.E80*	ENST00000237653	NM_000672.3	80	Gaa/Taa	0	
C5orf48			GRCh37	5	125971814	125971814	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_046																					ENST00000357147.3:c.286A>G	p.Lys96Glu	p.K96E	ENST00000357147	NM_207408.1	96	Aaa/Gaa	0	
GABRR1	2569		GRCh37	6	89926934	89926934	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_046																					ENST00000454853.2:c.108G>A	p.Met36Ile	p.M36I	ENST00000454853	NM_001256704.1	36	atG/atA	0	
HDAC9	9734		GRCh37	7	18688244	18688244	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_046																					ENST00000432645.2:c.1396C>A	p.Gln466Lys	p.Q466K	ENST00000432645	NM_058176.2	466	Cag/Aag	0	
AVL9	23080		GRCh37	7	32582761	32582761	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_046																					ENST00000318709.4:c.102C>A	p.Phe34Leu	p.F34L	ENST00000318709	NM_015060.1	34	ttC/ttA	0	
GDF2	2658		GRCh37	10	48413762	48413762	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_046																					ENST00000249598.1:c.1106C>T	p.Thr369Met	p.T369M	ENST00000249598	NM_016204.1	369	aCg/aTg	0	
OR10A5	144124		GRCh37	11	6867521	6867521	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_046																					ENST00000299454.4:c.608G>T	p.Gly203Val	p.G203V	ENST00000299454		203	gGa/gTa	0	
VSTM5	387804		GRCh37	11	93553909	93553909	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_046																					ENST00000409977.1:c.559G>A	p.Glu187Lys	p.E187K	ENST00000409977	NM_001144871.1	187	Gaa/Aaa	0	
GRIK4	2900		GRCh37	11	120837916	120837916	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_046																					ENST00000438375.2:c.2279G>C	p.Arg760Pro	p.R760P	ENST00000438375	NM_014619.2	760	cGg/cCg	0	
MTUS2	23281		GRCh37	13	29608186	29608186	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_046																					ENST00000431530.3:c.2400G>T	p.Gln800His	p.Q800H	ENST00000431530	NM_001033602.2	800	caG/caT	0	
DIS3L	115752		GRCh37	15	66587379	66587379	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_046																					ENST00000319212.4:c.193G>A	p.Val65Ile	p.V65I	ENST00000319212	NM_001143688.1	65	Gtt/Att	0	
DYNC1LI2	1783		GRCh37	16	66762967	66762967	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_046																					ENST00000258198.2:c.1077G>T	p.Glu359Asp	p.E359D	ENST00000258198	NM_006141.2	359	gaG/gaT	0	
NBR1	4077		GRCh37	17	41343439	41343439	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_046																					ENST00000341165.6:c.914T>A	p.Leu305Ter	p.L305*	ENST00000341165	NM_031862.2	305	tTg/tAg	0	
FOXK2	3607		GRCh37	17	80545146	80545146	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_046																					ENST00000335255.5:c.1784A>G	p.Asn595Ser	p.N595S	ENST00000335255	NM_004514.3	595	aAt/aGt	0	
MUC16	94025		GRCh37	19	9062116	9062116	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_046																					ENST00000397910.4:c.25330G>T	p.Ala8444Ser	p.A8444S	ENST00000397910	NM_024690.2	8444	Gct/Tct	0	
FTCD	10841		GRCh37	21	47571510	47571510	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_046																					ENST00000291670.5:c.598G>A	p.Ala200Thr	p.A200T	ENST00000291670	NM_006657.2	200	Gcg/Acg	0	
AVPR2	554		GRCh37	X	153171222	153171222	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_046																					ENST00000337474.5:c.262G>A	p.Val88Met	p.V88M	ENST00000337474	NM_001146151.1	88	Gtg/Atg	0	
UBR4	23352		GRCh37	1	19413177	19413177	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR235																					ENST00000375254.3:c.14683G>A	p.Val4895Ile	p.V4895I	ENST00000375254	NM_020765.2	4895	Gtc/Atc	0	
SZT2	23334		GRCh37	1	43896950	43896950	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR235																					ENST00000562955.1:c.4760G>C	p.Ser1587Thr	p.S1587T	ENST00000562955	NM_015284.3	1587	aGc/aCc	0	
CACNA1E	777		GRCh37	1	181702573	181702573	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR235																					ENST00000367573.2:c.2949G>C	p.Arg983Ser	p.R983S	ENST00000367573	NM_001205293.1	983	agG/agC	0	
PIK3C2B	5287		GRCh37	1	204401413	204401413	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR235																					ENST00000367187.3:c.4070G>A	p.Arg1357Gln	p.R1357Q	ENST00000367187	NM_002646.3	1357	cGa/cAa	0	
BIRC6	57448		GRCh37	2	32702554	32702554	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR235																					ENST00000421745.2:c.6971C>T	p.Ala2324Val	p.A2324V	ENST00000421745	NM_016252.3	2324	gCc/gTc	0	
ALMS1	7840		GRCh37	2	73799935	73799935	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR235																					ENST00000264448.6:c.10928T>C	p.Leu3643Pro	p.L3643P	ENST00000264448	NM_015120.4	3643	cTc/cCc	0	
ZAP70	7535		GRCh37	2	98354105	98354105	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR235																					ENST00000264972.5:c.1459G>C	p.Gly487Arg	p.G487R	ENST00000264972	NM_001079.3	487	Ggt/Cgt	0	
ZAP70	7535		GRCh37	2	98354106	98354106	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR235																					ENST00000264972.5:c.1460G>T	p.Gly487Val	p.G487V	ENST00000264972	NM_001079.3	487	gGt/gTt	0	
ITPR1	3708		GRCh37	3	4712588	4712588	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR235																					ENST00000354582.6:c.2182C>T	p.Arg728Ter	p.R728*	ENST00000354582		728	Cga/Tga	0	
SNRK	54861		GRCh37	3	43389166	43389166	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR235																					ENST00000296088.7:c.1415C>T	p.Ser472Phe	p.S472F	ENST00000296088	NM_017719.4	472	tCt/tTt	0	
ZIC4	84107		GRCh37	3	147113966	147113966	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR235																					ENST00000383075.3:c.361C>T	p.Arg121Cys	p.R121C	ENST00000383075	NM_032153.5	121	Cgc/Tgc	0	
CWH43	80157		GRCh37	4	49052853	49052853	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR235																					ENST00000226432.4:c.2008C>T	p.His670Tyr	p.H670Y	ENST00000226432	NM_025087.2	670	Cat/Tat	0	
MRPS27	23107		GRCh37	5	71516782	71516782	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR235																					ENST00000261413.5:c.1199C>T	p.Ala400Val	p.A400V	ENST00000261413	NM_015084.2	400	gCg/gTg	0	
ZNF680	340252		GRCh37	7	64004088	64004088	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR235																					ENST00000309683.6:c.250C>T	p.Pro84Ser	p.P84S	ENST00000309683	NM_178558.4	84	Cca/Tca	0	
PXDNL	137902		GRCh37	8	52321615	52321615	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR235																					ENST00000356297.4:c.2569G>A	p.Ala857Thr	p.A857T	ENST00000356297	NM_144651.4	857	Gcg/Acg	0	
RAD54B	25788		GRCh37	8	95423516	95423516	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR235																					ENST00000336148.5:c.332T>A	p.Val111Glu	p.V111E	ENST00000336148	NM_012415.3	111	gTg/gAg	0	
OSBPL5	114879		GRCh37	11	3125536	3125536	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR235																					ENST00000263650.7:c.1131G>C	p.Gln377His	p.Q377H	ENST00000263650	NM_020896.3	377	caG/caC	0	
CCKBR	887		GRCh37	11	6291413	6291413	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR235																					ENST00000334619.2:c.499A>G	p.Thr167Ala	p.T167A	ENST00000334619	NM_176875.3	167	Acg/Gcg	0	
ARNTL	406		GRCh37	11	13397168	13397168	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR235																					ENST00000403290.1:c.1184C>T	p.Thr395Met	p.T395M	ENST00000403290		395	aCg/aTg	0	
STX5	6811		GRCh37	11	62591662	62591662	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR235																					ENST00000294179.3:c.884A>C	p.Lys295Thr	p.K295T	ENST00000294179	NM_001244666.1	295	aAg/aCg	0	
ROBO3	64221		GRCh37	11	124747522	124747522	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR235																					ENST00000397801.1:c.2954G>C	p.Ser985Thr	p.S985T	ENST00000397801	NM_022370.3	985	aGc/aCc	0	
PPP1R12A	4659		GRCh37	12	80172334	80172334	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR235																					ENST00000261207.5:c.3002T>A	p.Leu1001His	p.L1001H	ENST00000261207	NM_001143885.1	1001	cTc/cAc	0	
HCFC2	29915		GRCh37	12	104473327	104473327	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR235																					ENST00000229330.4:c.578A>G	p.His193Arg	p.H193R	ENST00000229330	NM_013320.2	193	cAc/cGc	0	
KCTD12	115207		GRCh37	13	77459857	77459857	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR235																					ENST00000377474.2:c.427C>T	p.Arg143Trp	p.R143W	ENST00000377474	NM_138444.3	143	Cgg/Tgg	0	
ARID4A	5926		GRCh37	14	58827679	58827679	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR235																					ENST00000355431.3:c.1999G>A	p.Gly667Arg	p.G667R	ENST00000355431	NM_002892.3	667	Gga/Aga	0	
SCAPER	49855		GRCh37	15	77057395	77057395	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR235																					ENST00000324767.7:c.1632G>T	p.Lys544Asn	p.K544N	ENST00000324767	NM_020843.2	544	aaG/aaT	0	
RBL2	5934		GRCh37	16	53498256	53498256	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR235																					ENST00000262133.6:c.1679C>G	p.Pro560Arg	p.P560R	ENST00000262133	NM_005611.3	560	cCt/cGt	0	
SMARCA4	6597		GRCh37	19	11134239	11134239	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR235																					ENST00000344626.4:c.2905C>T	p.His969Tyr	p.H969Y	ENST00000344626	NM_003072.3	969	Cac/Tac	0	
SLC24A3	57419		GRCh37	20	19677547	19677547	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR235																					ENST00000328041.6:c.1598C>G	p.Ala533Gly	p.A533G	ENST00000328041	NM_020689.3	533	gCc/gGc	0	
COL4A6	1288		GRCh37	X	107417700	107417700	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR235																					ENST00000372216.4:c.3111C>G	p.Ile1037Met	p.I1037M	ENST00000372216	NM_001847.2	1037	atC/atG	0	
COL4A6	1288		GRCh37	X	107418431	107418431	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR235																					ENST00000372216.4:c.2848C>G	p.Pro950Ala	p.P950A	ENST00000372216	NM_001847.2	950	Ccg/Gcg	0	
HTR2C	3358		GRCh37	X	113965907	113965907	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR235																					ENST00000276198.1:c.240G>A	p.Met80Ile	p.M80I	ENST00000276198	NM_000868.2	80	atG/atA	0	
USP24	23358		GRCh37	1	55541168	55541168	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR356																					ENST00000294383.6:c.7409G>A	p.Arg2470Gln	p.R2470Q	ENST00000294383	NM_015306.2	2470	cGa/cAa	0	
RP5-1052I5.2			GRCh37	1	87599357	87599357	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR356																					ENST00000370548.2:c.827C>T	p.Ser276Leu	p.S276L	ENST00000370548		276	tCa/tTa	0	
TCHHL1	126637		GRCh37	1	152058558	152058558	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR356																					ENST00000368806.1:c.1600G>A	p.Asp534Asn	p.D534N	ENST00000368806	NM_001008536.1	534	Gac/Aac	0	
FMN2	56776		GRCh37	1	240256460	240256460	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR356																					ENST00000319653.9:c.1051G>A	p.Glu351Lys	p.E351K	ENST00000319653	NM_020066.4	351	Gag/Aag	0	
TET3	200424		GRCh37	2	74275322	74275322	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR356																					ENST00000409262.3:c.1873G>T	p.Glu625Ter	p.E625*	ENST00000409262	NM_144993.1	625	Gag/Tag	0	
DUSP28	285193		GRCh37	2	241500201	241500201	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR356																					ENST00000343217.2:c.100G>T	p.Ala34Ser	p.A34S	ENST00000343217	NM_001033575.1	34	Gcg/Tcg	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR356																					ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt	0	
OSMR	9180		GRCh37	5	38933523	38933523	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR356																					ENST00000274276.3:c.2917G>C	p.Asp973His	p.D973H	ENST00000274276	NM_003999.2	973	Gat/Cat	0	
MAP3K1	4214		GRCh37	5	56178143	56178143	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR356																					ENST00000399503.3:c.3116C>T	p.Ser1039Leu	p.S1039L	ENST00000399503	NM_005921.1	1039	tCa/tTa	0	
ZFYVE16	9765		GRCh37	5	79747438	79747438	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR356																					ENST00000338008.5:c.3517C>G	p.Leu1173Val	p.L1173V	ENST00000338008	NM_014733.3	1173	Ctt/Gtt	0	
AFAP1L1	134265		GRCh37	5	148712258	148712258	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR356																					ENST00000296721.4:c.1976G>C	p.Gly659Ala	p.G659A	ENST00000296721	NM_152406.2	659	gGa/gCa	0	
ATP6V1G2	534		GRCh37	6	31514279	31514279	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR356																					ENST00000303892.5:c.58G>C	p.Glu20Gln	p.E20Q	ENST00000303892	NM_138282.2	20	Gag/Cag	0	
TAP1	6890		GRCh37	6	32821282	32821282	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR356																					ENST00000354258.4:c.312C>G	p.Phe104Leu	p.F104L	ENST00000354258	NM_000593.5	104	ttC/ttG	0	
LRCH4	4034		GRCh37	7	100175310	100175310	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR356																					ENST00000310300.6:c.1093G>A	p.Asp365Asn	p.D365N	ENST00000310300	NM_002319.3	365	Gat/Aat	0	
SPAM1	6677		GRCh37	7	123593682	123593682	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR356																					ENST00000223028.7:c.58G>A	p.Val20Ile	p.V20I	ENST00000223028		20	Gta/Ata	0	
NRF1	4899		GRCh37	7	129367082	129367082	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR356																					ENST00000223190.4:c.1225G>A	p.Glu409Lys	p.E409K	ENST00000223190		409	Gaa/Aaa	0	
TRPV6	55503		GRCh37	7	142571230	142571230	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR356																					ENST00000359396.3:c.1759C>T	p.His587Tyr	p.H587Y	ENST00000359396	NM_018646.4	587	Cat/Tat	0	
PAPPA	5069		GRCh37	9	119097321	119097321	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR356																					ENST00000328252.3:c.3579G>C	p.Gln1193His	p.Q1193H	ENST00000328252	NM_002581.3	1193	caG/caC	0	
ECD	11319		GRCh37	10	74899226	74899226	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR356																					ENST00000372979.4:c.1262A>G	p.Asp421Gly	p.D421G	ENST00000372979	NM_007265.2	421	gAt/gGt	0	
PIDD			GRCh37	11	800196	800196	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR356																					ENST00000347755.5:c.2209G>A	p.Glu737Lys	p.E737K	ENST00000347755	NM_145886.3	737	Gag/Aag	0	
SLC22A18AS	5003		GRCh37	11	2909787	2909787	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR356																					ENST00000533594.1:c.385G>C	p.Glu129Gln	p.E129Q	ENST00000533594	NM_007105.2	129	Gag/Cag	0	
NLRP10	338322		GRCh37	11	7982671	7982671	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BR356																					ENST00000328600.2:c.488C>G	p.Ser163Ter	p.S163*	ENST00000328600	NM_176821.3	163	tCa/tGa	0	
SIDT2	51092		GRCh37	11	117053325	117053325	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR356																					ENST00000324225.4:c.607C>T	p.Gln203Ter	p.Q203*	ENST00000324225	NM_001040455.1	203	Cag/Tag	0	
PDZD3	79849		GRCh37	11	119060193	119060193	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR356																					ENST00000531114.1:c.1708C>G	p.Leu570Val	p.L570V	ENST00000531114		570	Cta/Gta	0	
LIMA1	51474		GRCh37	12	50571260	50571260	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR356																					ENST00000341247.4:c.1867G>A	p.Glu623Lys	p.E623K	ENST00000341247	NM_016357.4	623	Gaa/Aaa	0	
MTMR10	54893		GRCh37	15	31244224	31244224	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR356																					ENST00000435680.1:c.1154C>T	p.Ser385Leu	p.S385L	ENST00000435680	NM_017762.2	385	tCa/tTa	0	
TP53BP1	7158		GRCh37	15	43748367	43748367	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR356																					ENST00000263801.3:c.2424G>C	p.Lys808Asn	p.K808N	ENST00000263801	NM_005657.2	808	aaG/aaC	0	
CAPN15	6650		GRCh37	16	598184	598184	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR356																					ENST00000219611.2:c.1346C>T	p.Ala449Val	p.A449V	ENST00000219611	NM_005632.2	449	gCg/gTg	0	
GP2	2813		GRCh37	16	20327286	20327286	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR356																					ENST00000381362.4:c.1502C>G	p.Thr501Ser	p.T501S	ENST00000381362	NM_001007240.1	501	aCt/aGt	0	
PRSS8	5652		GRCh37	16	31143584	31143584	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR356																					ENST00000317508.6:c.778G>C	p.Asp260His	p.D260H	ENST00000317508	NM_002773.3	260	Gat/Cat	0	
TP53	7157		GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR356																					ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt	0	
GPR142	350383		GRCh37	17	72368159	72368159	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR356																					ENST00000335666.4:c.809C>T	p.Ser270Leu	p.S270L	ENST00000335666	NM_181790.1	270	tCg/tTg	0	
SLC14A1	6563		GRCh37	18	43307328	43307328	+	intron_variant	Intron	SNP	C	C	T			brca_smc_2018_BR356																					ENST00000321925.4:c.-22+2350C>T		p.*8*	ENST00000321925	NM_001128588.3			0	
COL5A3	50509		GRCh37	19	10077388	10077388	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR356																					ENST00000264828.3:c.4493G>A	p.Arg1498His	p.R1498H	ENST00000264828	NM_015719.3	1498	cGc/cAc	0	
ZNF329	79673		GRCh37	19	58640399	58640399	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR356																					ENST00000358067.4:c.472C>T	p.His158Tyr	p.H158Y	ENST00000358067		158	Cat/Tat	0	
NNAT	4826		GRCh37	20	36149756	36149756	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR356																					ENST00000062104.2:c.23C>T	p.Ser8Leu	p.S8L	ENST00000062104	NM_005386.2	8	tCg/tTg	0	
C4BPB	725		GRCh37	1	207262893	207262893	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_012																					ENST00000243611.5:c.17C>T	p.Ala6Val	p.A6V	ENST00000243611	NM_000716.3	6	gCg/gTg	0	
PLEK	5341		GRCh37	2	68608030	68608030	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_012																					ENST00000234313.7:c.374A>G	p.Asp125Gly	p.D125G	ENST00000234313	NM_002664.2	125	gAc/gGc	0	
NBEAL2	23218		GRCh37	3	47037220	47037220	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_012																					ENST00000450053.3:c.1915G>T	p.Gly639Cys	p.G639C	ENST00000450053	NM_015175.2	639	Ggc/Tgc	0	
GPRIN1	114787		GRCh37	5	176024233	176024233	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_012																					ENST00000303991.4:c.2603C>T	p.Thr868Met	p.T868M	ENST00000303991	NM_052899.2	868	aCg/aTg	0	
ZUFSP			GRCh37	6	116988165	116988165	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_012																					ENST00000368576.3:c.191G>A	p.Arg64Lys	p.R64K	ENST00000368576	NM_145062.2	64	aGg/aAg	0	
CACNA2D1	781		GRCh37	7	81603779	81603779	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_012																					ENST00000356253.5:c.2081A>T	p.Asn694Ile	p.N694I	ENST00000356253		694	aAc/aTc	0	
SEMA3A	10371		GRCh37	7	83610785	83610785	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_012																					ENST00000265362.4:c.1504T>C	p.Tyr502His	p.Y502H	ENST00000265362	NM_006080.2	502	Tat/Cat	0	
KIAA0100	9703		GRCh37	17	26943740	26943740	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_012																					ENST00000528896.2:c.6053C>T	p.Thr2018Ile	p.T2018I	ENST00000528896	NM_014680.3	2018	aCa/aTa	0	
KLK12	43849		GRCh37	19	51535329	51535329	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_012																					ENST00000319590.4:c.260G>A	p.Arg87Gln	p.R87Q	ENST00000319590	NM_145894.1	87	cGg/cAg	0	
CDC25B	994		GRCh37	20	3782577	3782577	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_012																					ENST00000245960.5:c.928G>A	p.Val310Ile	p.V310I	ENST00000245960	NM_021873.2	310	Gtc/Atc	0	
ZFYVE9	9372		GRCh37	1	52705085	52705085	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_030																					ENST00000287727.3:c.1996C>T	p.Pro666Ser	p.P666S	ENST00000287727	NM_004799.3	666	Cca/Tca	0	
AMIGO1	57463		GRCh37	1	110050765	110050765	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_030																					ENST00000369862.1:c.770A>G	p.Lys257Arg	p.K257R	ENST00000369862	NM_020703.2	257	aAg/aGg	0	
SEMA4A	64218		GRCh37	1	156144674	156144674	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_030																					ENST00000355014.2:c.1377G>T	p.Glu459Asp	p.E459D	ENST00000355014	NM_001193301.1	459	gaG/gaT	0	
EFR3B	22979		GRCh37	2	25354327	25354327	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_030																					ENST00000403714.3:c.940G>A	p.Glu314Lys	p.E314K	ENST00000403714	NM_014971.1	314	Gaa/Aaa	0	
EIF2AK3	9451		GRCh37	2	88882993	88882993	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_030																					ENST00000303236.3:c.1718A>G	p.Asn573Ser	p.N573S	ENST00000303236	NM_004836.5	573	aAt/aGt	0	
CDX1	1044		GRCh37	5	149546848	149546848	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_030																					ENST00000231656.8:c.409C>T	p.Arg137Trp	p.R137W	ENST00000231656	NM_001804.2	137	Cgg/Tgg	0	
C9orf43	257169		GRCh37	9	116185631	116185631	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_030																					ENST00000288462.4:c.509C>T	p.Ser170Phe	p.S170F	ENST00000288462	NM_152786.2	170	tCt/tTt	0	
C11orf82			GRCh37	11	82643413	82643413	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_030																					ENST00000329143.3:c.130C>T	p.Arg44Ter	p.R44*	ENST00000329143		44	Cga/Tga	0	
SMARCC2	6601		GRCh37	12	56558483	56558483	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_030																					ENST00000267064.4:c.3172C>G	p.Pro1058Ala	p.P1058A	ENST00000267064	NM_003075.3	1058	Ccc/Gcc	0	
SUPT20H	55578		GRCh37	13	37599480	37599480	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_030																					ENST00000350612.6:c.1306G>C	p.Val436Leu	p.V436L	ENST00000350612	NM_001014286.2	436	Gtt/Ctt	0	
CHD2	1106		GRCh37	15	93489394	93489394	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_030																					ENST00000394196.4:c.1325A>T	p.Asp442Val	p.D442V	ENST00000394196	NM_001271.3	442	gAc/gTc	0	
HAUS5	23354		GRCh37	19	36110611	36110611	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_030																					ENST00000203166.5:c.1357C>T	p.His453Tyr	p.H453Y	ENST00000203166	NM_015302.1	453	Cat/Tat	0	
HNRNPL	3191		GRCh37	19	39340479	39340479	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_030																					ENST00000221419.5:c.128G>A	p.Gly43Asp	p.G43D	ENST00000221419	NM_001533.2	43	gGc/gAc	0	
DACH2	117154		GRCh37	X	86087109	86087109	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_030																					ENST00000373125.4:c.1751G>T	p.Gly584Val	p.G584V	ENST00000373125	NM_053281.3	584	gGa/gTa	0	
GPR45	11250		GRCh37	2	105858332	105858332	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR205																					ENST00000258456.1:c.17C>T	p.Thr6Met	p.T6M	ENST00000258456	NM_007227.3	6	aCg/aTg	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR205																					ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt	0	
TBX18	9096		GRCh37	6	85453991	85453991	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR205																					ENST00000369663.5:c.992C>T	p.Ser331Phe	p.S331F	ENST00000369663	NM_001080508.2	331	tCc/tTc	0	
IGFBP3	3486		GRCh37	7	45960480	45960480	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR205																					ENST00000275521.6:c.260G>A	p.Arg87His	p.R87H	ENST00000275521	NM_001013398.1	87	cGc/cAc	0	
C14orf39	317761		GRCh37	14	60936323	60936323	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR205																					ENST00000321731.3:c.603T>A	p.Asn201Lys	p.N201K	ENST00000321731	NM_174978.2	201	aaT/aaA	0	
KIAA0247			GRCh37	14	70171390	70171390	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR205																					ENST00000342745.4:c.389C>T	p.Ala130Val	p.A130V	ENST00000342745	NM_014734.3	130	gCg/gTg	0	
MAP3K9	4293		GRCh37	14	71275776	71275776	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR205																					ENST00000554752.2:c.113A>C	p.Glu38Ala	p.E38A	ENST00000554752	NM_001284230.1	38	gAg/gCg	0	
PCSK6	5046		GRCh37	15	101924562	101924562	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR205																					ENST00000348070.1:c.1376C>T	p.Ala459Val	p.A459V	ENST00000348070	NM_138320.1	459	gCg/gTg	0	
TUBG2	27175		GRCh37	17	40815005	40815005	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			brca_smc_2018_BR205																					ENST00000251412.7:c.414T>A	p.Cys138Ter	p.C138*	ENST00000251412	NM_016437.2	138	tgT/tgA	0	
EFTUD2	9343		GRCh37	17	42945654	42945654	+	splice_donor_variant	Splice_Site	SNP	C	C	T			brca_smc_2018_BR205																					ENST00000426333.2:c.1058+1G>A		p.X353_splice	ENST00000426333	NM_001142605.1	353		0	
HOOK2	29911		GRCh37	19	12876944	12876944	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR205																					ENST00000397668.3:c.1484C>G	p.Ala495Gly	p.A495G	ENST00000397668	NM_013312.2	495	gCg/gGg	0	
OR1I1	126370		GRCh37	19	15198070	15198070	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR205																					ENST00000209540.2:c.194A>G	p.Asn65Ser	p.N65S	ENST00000209540	NM_001004713.1	65	aAc/aGc	0	
TRMU	55687		GRCh37	22	46751408	46751408	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR205																					ENST00000290846.4:c.941C>T	p.Ala314Val	p.A314V	ENST00000290846	NM_018006.4	314	gCg/gTg	0	
GPR25	2848		GRCh37	1	200842880	200842880	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_126																					ENST00000304244.2:c.715C>T	p.Arg239Trp	p.R239W	ENST00000304244	NM_005298.3	239	Cgg/Tgg	0	
PPP1R12B	4660		GRCh37	1	202538281	202538281	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_126																					ENST00000608999.1:c.2818C>G	p.Arg940Gly	p.R940G	ENST00000608999	NM_002481.3	940	Cga/Gga	0	
LIN9	286826		GRCh37	1	226496828	226496828	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_126																					ENST00000328205.5:c.61G>C	p.Asp21His	p.D21H	ENST00000328205	NM_173083.3	21	Gac/Cac	0	
LMCD1	29995		GRCh37	3	8590488	8590488	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_126																					ENST00000157600.3:c.622C>A	p.Pro208Thr	p.P208T	ENST00000157600	NM_014583.3	208	Ccc/Acc	0	
COL6A6	131873		GRCh37	3	130293102	130293102	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_126																					ENST00000358511.6:c.3280A>C	p.Met1094Leu	p.M1094L	ENST00000358511	NM_001102608.1	1094	Atg/Ctg	0	
IFT80	57560		GRCh37	3	160018698	160018698	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_126																					ENST00000326448.7:c.1288G>T	p.Ala430Ser	p.A430S	ENST00000326448	NM_020800.2	430	Gca/Tca	0	
MCF2L2	23101		GRCh37	3	182937703	182937703	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_126																					ENST00000328913.3:c.2311G>A	p.Asp771Asn	p.D771N	ENST00000328913	NM_015078.2	771	Gat/Aat	0	
DTHD1	401124		GRCh37	4	36345350	36345350	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_126																					ENST00000456874.2:c.2250G>T	p.Lys750Asn	p.K750N	ENST00000456874	NM_001170700.2	750	aaG/aaT	0	
PRDM9	56979		GRCh37	5	23527470	23527470	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_126																					ENST00000296682.3:c.2273G>A	p.Arg758His	p.R758H	ENST00000296682	NM_020227.2	758	cGc/cAc	0	
RAI14	26064		GRCh37	5	34803872	34803872	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_126																					ENST00000265109.3:c.312G>C	p.Lys104Asn	p.K104N	ENST00000265109	NM_015577.2	104	aaG/aaC	0	
DSP	1832		GRCh37	6	7579889	7579889	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_126																					ENST00000379802.3:c.3466C>A	p.Gln1156Lys	p.Q1156K	ENST00000379802	NM_004415.2	1156	Cag/Aag	0	
MEP1A	4224		GRCh37	6	46777198	46777198	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_126																					ENST00000230588.4:c.304T>C	p.Phe102Leu	p.F102L	ENST00000230588	NM_005588.2	102	Ttc/Ctc	0	
ZHX1	11244		GRCh37	8	124268049	124268049	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_126																					ENST00000297857.2:c.138C>G	p.Ile46Met	p.I46M	ENST00000297857		46	atC/atG	0	
RET	5979		GRCh37	10	43606743	43606743	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_126																					ENST00000355710.3:c.1352C>T	p.Thr451Met	p.T451M	ENST00000355710	NM_020975.4	451	aCg/aTg	0	
BICC1	80114		GRCh37	10	60556169	60556169	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_126																					ENST00000373886.3:c.1249C>A	p.Leu417Ile	p.L417I	ENST00000373886	NM_001080512.1	417	Ctt/Att	0	
SLC22A8	9376		GRCh37	11	62768294	62768294	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_126																					ENST00000336232.2:c.335G>A	p.Trp112Ter	p.W112*	ENST00000336232	NM_001184736.1	112	tGg/tAg	0	
APOA4	337		GRCh37	11	116691801	116691801	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_126																					ENST00000357780.3:c.973C>T	p.Leu325Phe	p.L325F	ENST00000357780	NM_000482.3	325	Ctc/Ttc	0	
CD163L1	283316		GRCh37	12	7527258	7527258	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_126																					ENST00000313599.3:c.3189C>G	p.Asp1063Glu	p.D1063E	ENST00000313599		1063	gaC/gaG	0	
TMED2	10959		GRCh37	12	124069285	124069285	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_126																					ENST00000262225.3:c.102T>G	p.Phe34Leu	p.F34L	ENST00000262225	NM_006815.3	34	ttT/ttG	0	
DCT	1638		GRCh37	13	95114304	95114304	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_126																					ENST00000377028.5:c.1003G>C	p.Asp335His	p.D335H	ENST00000377028	NM_001922.3	335	Gac/Cac	0	
GP2	2813		GRCh37	16	20335288	20335288	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_126																					ENST00000381362.4:c.385G>T	p.Gly129Trp	p.G129W	ENST00000381362	NM_001007240.1	129	Ggg/Tgg	0	
HYDIN	54768		GRCh37	16	70969958	70969958	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_126																					ENST00000393567.2:c.7055G>A	p.Arg2352Gln	p.R2352Q	ENST00000393567	NM_001270974.1	2352	cGa/cAa	0	
TP53	7157		GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_126																					ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt	0	
GAS2L2	246176		GRCh37	17	34074069	34074069	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_126																					ENST00000254466.6:c.1051A>C	p.Thr351Pro	p.T351P	ENST00000254466	NM_139285.3	351	Acg/Ccg	0	
KRT9	3857		GRCh37	17	39726442	39726442	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_126																					ENST00000246662.4:c.673A>C	p.Thr225Pro	p.T225P	ENST00000246662	NM_000226.3	225	Act/Cct	0	
CTDP1	9150		GRCh37	18	77457957	77457957	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_126																					ENST00000299543.7:c.590C>T	p.Thr197Ile	p.T197I	ENST00000299543	NM_001202504.1	197	aCc/aTc	0	
ADAMTS10	81794		GRCh37	19	8651575	8651575	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_126																					ENST00000597188.1:c.2270T>A	p.Leu757Gln	p.L757Q	ENST00000597188	NM_030957.2	757	cTg/cAg	0	
HKR1	284459		GRCh37	19	37854373	37854373	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_126																					ENST00000324411.4:c.1676G>A	p.Gly559Asp	p.G559D	ENST00000324411	NM_181786.2	559	gGc/gAc	0	
ECH1	1891		GRCh37	19	39322034	39322034	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_126																					ENST00000221418.4:c.175C>G	p.Arg59Gly	p.R59G	ENST00000221418	NM_001398.2	59	Cgt/Ggt	0	
NPBWR2	2832		GRCh37	20	62737247	62737247	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_126																					ENST00000369768.1:c.938C>A	p.Pro313His	p.P313H	ENST00000369768	NM_005286.2	313	cCc/cAc	0	
FAM227A	646851		GRCh37	22	39035672	39035672	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_126																					ENST00000535113.1:c.283C>T	p.Pro95Ser	p.P95S	ENST00000535113	NM_001013647.1	95	Cca/Tca	0	
VPS13D	55187		GRCh37	1	12428566	12428566	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR301																					ENST00000358136.3:c.10492C>G	p.Leu3498Val	p.L3498V	ENST00000358136	NM_015378.2	3498	Ctc/Gtc	0	
CCDC30	728621		GRCh37	1	43042768	43042768	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BR301																					ENST00000340612.4:c.933C>G	p.Tyr311Ter	p.Y311*	ENST00000340612		311	taC/taG	0	
FOXD3	27022		GRCh37	1	63789598	63789598	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR301																					ENST00000371116.2:c.869C>T	p.Ala290Val	p.A290V	ENST00000371116	NM_012183.2	290	gCa/gTa	0	
COPA	1314		GRCh37	1	160268981	160268981	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR301																					ENST00000241704.7:c.1741C>G	p.Leu581Val	p.L581V	ENST00000241704	NM_004371.3	581	Cta/Gta	0	
INTS7	25896		GRCh37	1	212156137	212156137	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR301																					ENST00000366994.3:c.1013C>T	p.Ser338Phe	p.S338F	ENST00000366994	NM_001199811.1	338	tCt/tTt	0	
FAM71A	149647		GRCh37	1	212798258	212798258	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR301																					ENST00000294829.3:c.39G>C	p.Gln13His	p.Q13H	ENST00000294829	NM_153606.3	13	caG/caC	0	
PGBD5	79605		GRCh37	1	230459214	230459214	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR301																					ENST00000525115.1:c.1325T>A	p.Val442Asp	p.V442D	ENST00000525115		442	gTc/gAc	0	
LYST	1130		GRCh37	1	235866259	235866259	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR301																					ENST00000389793.2:c.10162G>A	p.Val3388Ile	p.V3388I	ENST00000389793	NM_000081.3	3388	Gtc/Atc	0	
PLEKHH2	130271		GRCh37	2	43965576	43965576	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR301																					ENST00000282406.4:c.3040C>G	p.Pro1014Ala	p.P1014A	ENST00000282406	NM_172069.3	1014	Cct/Gct	0	
CCDC108			GRCh37	2	219894249	219894249	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR301																					ENST00000341552.5:c.1526T>C	p.Val509Ala	p.V509A	ENST00000341552	NM_194302.3	509	gTc/gCc	0	
ITPR1	3708		GRCh37	3	4712565	4712565	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR301																					ENST00000354582.6:c.2159C>G	p.Ala720Gly	p.A720G	ENST00000354582		720	gCt/gGt	0	
PLCL2	23228		GRCh37	3	17051630	17051630	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR301																					ENST00000418129.2:c.414A>T	p.Gln138His	p.Q138H	ENST00000418129	NM_001144382.1	138	caA/caT	0	
CEP97	79598		GRCh37	3	101443534	101443534	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR301																					ENST00000341893.3:c.14G>C	p.Arg5Pro	p.R5P	ENST00000341893		5	cGc/cCc	0	
EFCAB12	90288		GRCh37	3	129130051	129130051	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR301																					ENST00000326085.3:c.985G>C	p.Glu329Gln	p.E329Q	ENST00000326085		329	Gag/Cag	0	
MUC4	4585		GRCh37	3	195513515	195513515	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR301																					ENST00000463781.3:c.4936G>A	p.Ala1646Thr	p.A1646T	ENST00000463781	NM_018406.6	1646	Gcc/Acc	0	
LEF1	51176		GRCh37	4	109000682	109000682	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR301																					ENST00000265165.1:c.811G>C	p.Glu271Gln	p.E271Q	ENST00000265165	NM_016269.4	271	Gaa/Caa	0	
NDST4	64579		GRCh37	4	115792052	115792052	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR301																					ENST00000264363.2:c.1591T>C	p.Tyr531His	p.Y531H	ENST00000264363	NM_022569.1	531	Tat/Cat	0	
SLC27A6	28965		GRCh37	5	128301876	128301876	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR301																					ENST00000262462.4:c.46C>A	p.Leu16Met	p.L16M	ENST00000262462		16	Ctg/Atg	0	
PRL	5617		GRCh37	6	22287774	22287774	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR301																					ENST00000306482.1:c.541C>T	p.Leu181Phe	p.L181F	ENST00000306482	NM_000948.5	181	Ctt/Ttt	0	
TRIM4	89122		GRCh37	7	99507196	99507196	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR301																					ENST00000355947.2:c.559C>G	p.Gln187Glu	p.Q187E	ENST00000355947	NM_033017.3	187	Cag/Gag	0	
FLNC	2318		GRCh37	7	128496882	128496882	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR301																					ENST00000325888.8:c.7468A>C	p.Ser2490Arg	p.S2490R	ENST00000325888	NM_001458.4	2490	Agt/Cgt	0	
DENND2A	27147		GRCh37	7	140223220	140223220	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR301																					ENST00000275884.6:c.2552A>T	p.Asp851Val	p.D851V	ENST00000275884		851	gAc/gTc	0	
PSD3	23362		GRCh37	8	18729978	18729978	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR301																					ENST00000440756.2:c.396C>A	p.Asp132Glu	p.D132E	ENST00000440756		132	gaC/gaA	0	
SLC10A5	347051		GRCh37	8	82606114	82606114	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR301																					ENST00000518568.1:c.1094G>C	p.Cys365Ser	p.C365S	ENST00000518568	NM_001010893.2	365	tGt/tCt	0	
FBXL6	26233		GRCh37	8	145581872	145581872	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR301																					ENST00000331890.5:c.236C>T	p.Ala79Val	p.A79V	ENST00000331890	NM_012162.3	79	gCc/gTc	0	
SIGMAR1	10280		GRCh37	9	34635814	34635814	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR301																					ENST00000277010.4:c.487G>T	p.Glu163Ter	p.E163*	ENST00000277010	NM_005866.2	163	Gag/Tag	0	
HINT2	84681		GRCh37	9	35813328	35813328	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR301																					ENST00000259667.5:c.335G>C	p.Gly112Ala	p.G112A	ENST00000259667	NM_032593.2	112	gGa/gCa	0	
CUBN	8029		GRCh37	10	17152918	17152918	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR301																					ENST00000377833.4:c.1015G>C	p.Gly339Arg	p.G339R	ENST00000377833	NM_001081.3	339	Ggg/Cgg	0	
ZFAND4	93550		GRCh37	10	46122070	46122070	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR301																					ENST00000344646.5:c.1201C>G	p.Leu401Val	p.L401V	ENST00000344646	NM_174890.2	401	Ctg/Gtg	0	
ZFYVE27	118813		GRCh37	10	99509305	99509305	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR301																					ENST00000393677.4:c.626A>G	p.Asn209Ser	p.N209S	ENST00000393677	NM_144588.6	209	aAc/aGc	0	
DNHD1	144132		GRCh37	11	6592872	6592872	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR301																					ENST00000254579.6:c.13918A>T	p.Asn4640Tyr	p.N4640Y	ENST00000254579	NM_144666.2	4640	Aat/Tat	0	
CDC42BPG	55561		GRCh37	11	64597186	64597186	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR301																					ENST00000342711.5:c.3724G>C	p.Ala1242Pro	p.A1242P	ENST00000342711	NM_017525.2	1242	Gcc/Ccc	0	
LTBP3	4054		GRCh37	11	65307306	65307306	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR301																					ENST00000301873.5:c.3432G>T	p.Glu1144Asp	p.E1144D	ENST00000301873	NM_001130144.2	1144	gaG/gaT	0	
FXYD6	53826		GRCh37	11	117712536	117712536	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR301																					ENST00000260282.4:c.142C>T	p.Leu48Phe	p.L48F	ENST00000260282	NM_001164836.2	48	Ctc/Ttc	0	
SLC37A2	219855		GRCh37	11	124954968	124954968	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR301																					ENST00000403796.2:c.1181T>C	p.Leu394Pro	p.L394P	ENST00000403796	NM_001145290.1	394	cTg/cCg	0	
ZFC3H1	196441		GRCh37	12	72030407	72030407	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR301																					ENST00000378743.3:c.1963T>C	p.Ser655Pro	p.S655P	ENST00000378743	NM_144982.4	655	Tca/Cca	0	
MYO16	23026		GRCh37	13	109562377	109562377	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR301																					ENST00000356711.2:c.1738A>G	p.Lys580Glu	p.K580E	ENST00000356711	NM_015011.1	580	Aaa/Gaa	0	
PRDM7	11105		GRCh37	16	90126797	90126797	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR301																					ENST00000449207.2:c.1185G>C	p.Trp395Cys	p.W395C	ENST00000449207	NM_001098173.1	395	tgG/tgC	0	
TP53	7157		GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR301																					ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag	0	
SLFN5	162394		GRCh37	17	33586445	33586445	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR301																					ENST00000299977.4:c.736A>G	p.Ile246Val	p.I246V	ENST00000299977	NM_144975.3	246	Ata/Gta	0	
KRTAP4-8	728224		GRCh37	17	39254054	39254054	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR301																					ENST00000333822.4:c.283T>A	p.Cys95Ser	p.C95S	ENST00000333822	NM_031960.2	95	Tgc/Agc	0	
KRTAP4-9	100132386		GRCh37	17	39262007	39262007	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR301																					ENST00000391415.1:c.367A>G	p.Ser123Gly	p.S123G	ENST00000391415	NM_001146041.1	123	Agc/Ggc	0	
OR4D2	124538		GRCh37	17	56247155	56247155	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR301																					ENST00000545221.1:c.139A>G	p.Ile47Val	p.I47V	ENST00000545221	NM_001004707.3	47	Atc/Gtc	0	
ABCA9	10350		GRCh37	17	67031398	67031398	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR301																					ENST00000340001.4:c.1117G>C	p.Gly373Arg	p.G373R	ENST00000340001	NM_080283.3	373	Ggg/Cgg	0	
TYMS	7298		GRCh37	18	657768	657768	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR301																					ENST00000323274.10:c.26C>G	p.Pro9Arg	p.P9R	ENST00000323274	NM_001071.2	9	cCg/cGg	0	
SERPINB5	5268		GRCh37	18	61160272	61160272	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR301																					ENST00000382771.4:c.511T>C	p.Trp171Arg	p.W171R	ENST00000382771	NM_002639.4	171	Tgg/Cgg	0	
C19orf45			GRCh37	19	7573214	7573214	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR301																					ENST00000361664.2:c.1416G>T	p.Glu472Asp	p.E472D	ENST00000361664	NM_198534.2	472	gaG/gaT	0	
FCGBP	8857		GRCh37	19	40433848	40433848	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR301																					ENST00000221347.6:c.421A>C	p.Thr141Pro	p.T141P	ENST00000221347	NM_003890.2	141	Acc/Ccc	0	
THBD	7056		GRCh37	20	23029823	23029823	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR301																					ENST00000377103.2:c.319G>C	p.Gly107Arg	p.G107R	ENST00000377103	NM_000361.2	107	Ggc/Cgc	0	
RAB22A	57403		GRCh37	20	56928572	56928572	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR301																					ENST00000244040.3:c.355A>C	p.Lys119Gln	p.K119Q	ENST00000244040	NM_020673.2	119	Aaa/Caa	0	
CLTCL1	8218		GRCh37	22	19211527	19211527	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR301																					ENST00000427926.1:c.2179G>T	p.Val727Leu	p.V727L	ENST00000427926		727	Gtg/Ttg	0	
CACNA1I	8911		GRCh37	22	40056442	40056442	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR301																					ENST00000402142.3:c.2698G>A	p.Asp900Asn	p.D900N	ENST00000402142	NM_021096.3	900	Gat/Aat	0	
NYX	60506		GRCh37	X	41333578	41333578	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR301																					ENST00000342595.2:c.872C>A	p.Ala291Asp	p.A291D	ENST00000342595	NM_022567.2	291	gCc/gAc	0	
EPHB2	2048		GRCh37	1	23111303	23111303	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR393																					ENST00000400191.3:c.545G>A	p.Gly182Asp	p.G182D	ENST00000400191	NM_004442.6	182	gGc/gAc	0	
RIMS3	9783		GRCh37	1	41101704	41101704	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR393																					ENST00000372683.1:c.243C>A	p.Ser81Arg	p.S81R	ENST00000372683		81	agC/agA	0	
SLC5A9	200010		GRCh37	1	48697650	48697650	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR393																					ENST00000438567.2:c.724G>C	p.Glu242Gln	p.E242Q	ENST00000438567	NM_001011547.2	242	Gag/Cag	0	
LRRC42	115353		GRCh37	1	54433505	54433505	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR393																					ENST00000319223.4:c.1180A>G	p.Arg394Gly	p.R394G	ENST00000319223	NM_052940.4	394	Aga/Gga	0	
IL23R	149233		GRCh37	1	67648534	67648534	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR393																					ENST00000347310.5:c.383C>A	p.Pro128His	p.P128H	ENST00000347310	NM_144701.2	128	cCt/cAt	0	
CD48	962		GRCh37	1	160651234	160651234	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR393																					ENST00000368046.3:c.410A>T	p.Lys137Ile	p.K137I	ENST00000368046	NM_001778.3	137	aAa/aTa	0	
SCYL3	57147		GRCh37	1	169839485	169839485	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR393																					ENST00000367770.1:c.536C>A	p.Thr179Lys	p.T179K	ENST00000367770		179	aCa/aAa	0	
ASTN1	460		GRCh37	1	176926837	176926837	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR393																					ENST00000361833.2:c.1864A>C	p.Lys622Gln	p.K622Q	ENST00000361833		622	Aag/Cag	0	
RMDN2	151393		GRCh37	2	38202371	38202371	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR393																					ENST00000354545.2:c.644A>G	p.Glu215Gly	p.E215G	ENST00000354545	NM_001170791.1	215	gAg/gGg	0	
SLC35F5	80255		GRCh37	2	114500407	114500407	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR393																					ENST00000245680.2:c.612G>C	p.Gln204His	p.Q204H	ENST00000245680	NM_025181.2	204	caG/caC	0	
UGGT1	56886		GRCh37	2	128886667	128886667	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR393																					ENST00000259253.6:c.1291G>A	p.Gly431Ser	p.G431S	ENST00000259253	NM_020120.3	431	Ggc/Agc	0	
XIRP2	129446		GRCh37	2	168099966	168099966	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR393																					ENST00000409195.1:c.2064T>A	p.Asp688Glu	p.D688E	ENST00000409195	NM_152381.5	688	gaT/gaA	0	
HELQ	113510		GRCh37	4	84368047	84368047	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR393																					ENST00000295488.3:c.1333G>T	p.Val445Leu	p.V445L	ENST00000295488	NM_133636.2	445	Gtg/Ttg	0	
C4orf45	152940		GRCh37	4	159881441	159881441	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR393																					ENST00000434826.2:c.353C>G	p.Pro118Arg	p.P118R	ENST00000434826	NM_152543.2	118	cCa/cGa	0	
SEMA5A	9037		GRCh37	5	9066595	9066595	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR393																					ENST00000382496.5:c.2237G>C	p.Gly746Ala	p.G746A	ENST00000382496	NM_003966.2	746	gGa/gCa	0	
ARL15	54622		GRCh37	5	53182420	53182420	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR393																					ENST00000504924.1:c.586G>T	p.Glu196Ter	p.E196*	ENST00000504924	NM_019087.2	196	Gaa/Taa	0	
ABLIM3	22885		GRCh37	5	148596551	148596551	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR393																					ENST00000309868.7:c.699T>G	p.Cys233Trp	p.C233W	ENST00000309868	NM_014945.2	233	tgT/tgG	0	
TCOF1	6949		GRCh37	5	149776084	149776084	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR393																					ENST00000377797.3:c.4024G>T	p.Gly1342Cys	p.G1342C	ENST00000377797	NM_001135243.1	1342	Ggc/Tgc	0	
SOX4	6659		GRCh37	6	21596122	21596122	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR393																					ENST00000244745.1:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000244745	NM_003107.2	453	Gag/Aag	0	
C6orf47	57827		GRCh37	6	31627052	31627052	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR393																					ENST00000375911.1:c.673T>G	p.Phe225Val	p.F225V	ENST00000375911	NM_021184.3	225	Ttc/Gtc	0	
SLC22A3	6581		GRCh37	6	160831865	160831865	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR393																					ENST00000275300.2:c.962C>T	p.Ser321Leu	p.S321L	ENST00000275300	NM_021977.3	321	tCa/tTa	0	
C7orf50	84310		GRCh37	7	1037410	1037410	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR393																					ENST00000357429.6:c.436G>C	p.Ala146Pro	p.A146P	ENST00000357429	NM_001134395.1	146	Gcc/Ccc	0	
AC110781.3			GRCh37	7	1886903	1886903	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR393																					ENST00000402221.1:c.148G>C	p.Gly50Arg	p.G50R	ENST00000402221		50	Ggg/Cgg	0	
AC006378.2			GRCh37	7	93605407	93605407	+	intron_variant,non_coding_transcript_variant	Intron	SNP	G	G	C			brca_smc_2018_BR393																					ENST00000426193.2:n.225+6429G>C		p.*75*	ENST00000426193				0	
COL1A2	1278		GRCh37	7	94047811	94047811	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR393																					ENST00000297268.6:c.1972G>A	p.Gly658Ser	p.G658S	ENST00000297268	NM_000089.3	658	Ggt/Agt	0	
COL1A2	1278		GRCh37	7	94047812	94047812	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR393																					ENST00000297268.6:c.1973G>T	p.Gly658Val	p.G658V	ENST00000297268	NM_000089.3	658	gGt/gTt	0	
WNT2	7472		GRCh37	7	116960726	116960726	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR393																					ENST00000265441.3:c.205G>A	p.Val69Met	p.V69M	ENST00000265441	NM_003391.2	69	Gtg/Atg	0	
EGR3	1960		GRCh37	8	22548055	22548055	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR393																					ENST00000317216.2:c.1095G>T	p.Lys365Asn	p.K365N	ENST00000317216	NM_004430.2	365	aaG/aaT	0	
FAM135B	51059		GRCh37	8	139165402	139165402	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR393																					ENST00000395297.1:c.1316T>C	p.Met439Thr	p.M439T	ENST00000395297	NM_015912.3	439	aTg/aCg	0	
KANK1	23189		GRCh37	9	713212	713212	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR393																					ENST00000382297.2:c.2446C>G	p.Pro816Ala	p.P816A	ENST00000382297	NM_001256877.1	816	Cca/Gca	0	
KIAA2026	158358		GRCh37	9	5920679	5920679	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR393																					ENST00000399933.3:c.5317C>G	p.Arg1773Gly	p.R1773G	ENST00000399933	NM_001017969.2	1773	Cgt/Ggt	0	
TET1	80312		GRCh37	10	70405557	70405557	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR393																					ENST00000373644.4:c.3071G>C	p.Gly1024Ala	p.G1024A	ENST00000373644	NM_030625.2	1024	gGg/gCg	0	
ACCSL	390110		GRCh37	11	44074227	44074227	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR393																					ENST00000378832.1:c.788C>T	p.Pro263Leu	p.P263L	ENST00000378832	NM_001031854.2	263	cCt/cTt	0	
ANKRD13D	338692		GRCh37	11	67067524	67067524	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR393																					ENST00000308440.6:c.742T>C	p.Phe248Leu	p.F248L	ENST00000308440		248	Ttc/Ctc	0	
RP11-111M22.2			GRCh37	11	76093114	76093114	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR393																					ENST00000321844.4:c.242T>C	p.Leu81Ser	p.L81S	ENST00000321844	NM_001282456.1	81	tTg/tCg	0	
GDPD4	220032		GRCh37	11	76940234	76940234	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR393																					ENST00000376217.2:c.1433T>A	p.Ile478Asn	p.I478N	ENST00000376217		478	aTt/aAt	0	
BUD13	84811		GRCh37	11	116628611	116628611	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR393																					ENST00000260210.4:c.1555C>G	p.Gln519Glu	p.Q519E	ENST00000260210	NM_032725.3	519	Caa/Gaa	0	
BUD13	84811		GRCh37	11	116628612	116628612	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR393																					ENST00000260210.4:c.1554G>T	p.Met518Ile	p.M518I	ENST00000260210	NM_032725.3	518	atG/atT	0	
PXN	5829		GRCh37	12	120661638	120661638	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			brca_smc_2018_BR393																					ENST00000228307.7:c.241-2A>C		p.X81_splice	ENST00000228307	NM_001080855.2	81		0	
ENOX1	55068		GRCh37	13	43986096	43986096	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR393																					ENST00000261488.6:c.164T>A	p.Leu55Gln	p.L55Q	ENST00000261488	NM_017993.3	55	cTg/cAg	0	
CLN5	1203		GRCh37	13	77566262	77566262	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR393																					ENST00000377453.3:c.176G>C	p.Gly59Ala	p.G59A	ENST00000377453	NM_006493.2	59	gGc/gCc	0	
ZNF764	92595		GRCh37	16	30566945	30566945	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR393																					ENST00000252797.2:c.797G>A	p.Arg266His	p.R266H	ENST00000252797	NM_033410.3	266	cGc/cAc	0	
LRRC29	26231		GRCh37	16	67242292	67242292	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR393																					ENST00000393992.1:c.208T>A	p.Ser70Thr	p.S70T	ENST00000393992	NM_012163.2	70	Tcc/Acc	0	
ATXN1L	342371		GRCh37	16	71884620	71884620	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR393																					ENST00000427980.2:c.977C>T	p.Ala326Val	p.A326V	ENST00000427980	NM_001137675.3	326	gCa/gTa	0	
BANP	54971		GRCh37	16	88066848	88066848	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR393																					ENST00000286122.7:c.1173A>T	p.Gln391His	p.Q391H	ENST00000286122	NM_001173539.1	391	caA/caT	0	
TP53	7157		GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR393																					ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag	0	
MYO15A	51168		GRCh37	17	18022853	18022853	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR393																					ENST00000205890.5:c.739G>A	p.Asp247Asn	p.D247N	ENST00000205890	NM_016239.3	247	Gac/Aac	0	
TRIM16L	147166		GRCh37	17	18634437	18634437	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR393																					ENST00000395671.4:c.256G>C	p.Gly86Arg	p.G86R	ENST00000395671	NM_001037330.1	86	Ggg/Cgg	0	
MAP3K3	4215		GRCh37	17	61769626	61769626	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR393																					ENST00000361733.3:c.1499C>T	p.Ala500Val	p.A500V	ENST00000361733	NM_002401.3	500	gCt/gTt	0	
CACNG5	27091		GRCh37	17	64873541	64873541	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR393																					ENST00000307139.3:c.91G>T	p.Asp31Tyr	p.D31Y	ENST00000307139	NM_145811.2	31	Gac/Tac	0	
PIEZO2	63895		GRCh37	18	10705680	10705680	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR393																					ENST00000503781.3:c.5314G>C	p.Glu1772Gln	p.E1772Q	ENST00000503781	NM_022068.2	1772	Gag/Cag	0	
ATP8B3	148229		GRCh37	19	1784912	1784912	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR393																					ENST00000310127.6:c.3566T>C	p.Ile1189Thr	p.I1189T	ENST00000310127	NM_138813.3	1189	aTc/aCc	0	
MBD3L1	85509		GRCh37	19	8953553	8953553	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR393																					ENST00000305625.2:c.199T>A	p.Trp67Arg	p.W67R	ENST00000305625	NM_145208.2	67	Tgg/Agg	0	
OR7D2	162998		GRCh37	19	9296660	9296660	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR393																					ENST00000344248.2:c.203G>T	p.Trp68Leu	p.W68L	ENST00000344248	NM_175883.2	68	tGg/tTg	0	
BAX	581		GRCh37	19	49464322	49464322	+	intron_variant	Intron	SNP	G	G	A			brca_smc_2018_BR393																					ENST00000345358.7:c.474+151G>A		p.*158*	ENST00000345358	NM_138764.4			0	
CD40	958		GRCh37	20	44750926	44750926	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR393																					ENST00000372285.3:c.185G>T	p.Cys62Phe	p.C62F	ENST00000372285	NM_001250.4	62	tGc/tTc	0	
DIP2A	23181		GRCh37	21	47965085	47965085	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR393																					ENST00000417564.2:c.2212T>A	p.Tyr738Asn	p.Y738N	ENST00000417564		738	Tat/Aat	0	
FOXRED2	80020		GRCh37	22	36889748	36889748	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR393																					ENST00000216187.6:c.1727G>C	p.Gly576Ala	p.G576A	ENST00000216187	NM_024955.5	576	gGg/gCg	0	
RBX1	9978		GRCh37	22	41368479	41368479	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BR393																					ENST00000216225.8:c.315-1G>C		p.X105_splice	ENST00000216225	NM_014248.3	105		0	
ZMYM3	9203		GRCh37	X	70465637	70465637	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR393																					ENST00000314425.5:c.2741A>T	p.Glu914Val	p.E914V	ENST00000314425	NM_201599.2	914	gAg/gTg	0	
ARMCX4	100131755		GRCh37	X	100744499	100744499	+	intron_variant,NMD_transcript_variant	Intron	SNP	C	C	G			brca_smc_2018_BR393																					ENST00000433011.1:c.1038+197C>G		p.*346*	ENST00000433011				0	
DCLRE1B	64858		GRCh37	1	114454386	114454386	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR233																					ENST00000369563.3:c.1172A>G	p.His391Arg	p.H391R	ENST00000369563	NM_022836.3	391	cAc/cGc	0	
TTN	7273		GRCh37	2	179398455	179398455	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR233																					ENST00000591111.1:c.97964A>G	p.Gln32655Arg	p.Q32655R	ENST00000591111		32655	cAg/cGg	0	
TTN	7273		GRCh37	2	179435839	179435839	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR233																					ENST00000591111.1:c.70097G>T	p.Cys23366Phe	p.C23366F	ENST00000591111		23366	tGt/tTt	0	
FNDC1	84624		GRCh37	6	159687150	159687150	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR233																					ENST00000297267.9:c.5319A>C	p.Lys1773Asn	p.K1773N	ENST00000297267	NM_032532.2	1773	aaA/aaC	0	
ZMAT4	79698		GRCh37	8	40532420	40532420	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR233																					ENST00000297737.6:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000297737	NM_024645.2	127	cGg/cAg	0	
PLEC	5339		GRCh37	8	144992107	144992107	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR233																					ENST00000322810.4:c.12293G>T	p.Gly4098Val	p.G4098V	ENST00000322810	NM_201380.2	4098	gGc/gTc	0	
NFIB	4781		GRCh37	9	14313485	14313485	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR233																					ENST00000380959.3:c.26C>T	p.Thr9Ile	p.T9I	ENST00000380959	NM_005596.3	9	aCt/aTt	0	
TESK1	7016		GRCh37	9	35607392	35607392	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR233																					ENST00000336395.5:c.606G>C	p.Lys202Asn	p.K202N	ENST00000336395	NM_006285.2	202	aaG/aaC	0	
GCNT1	2650		GRCh37	9	79118492	79118492	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR233																					ENST00000376730.4:c.1195G>T	p.Ala399Ser	p.A399S	ENST00000376730	NM_001490.4	399	Gcc/Tcc	0	
ATM	472		GRCh37	11	108224558	108224558	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR233																					ENST00000278616.4:c.8737G>T	p.Asp2913Tyr	p.D2913Y	ENST00000278616	NM_000051.3	2913	Gat/Tat	0	
LTBR	4055		GRCh37	12	6497587	6497587	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR233																					ENST00000228918.4:c.691C>G	p.Leu231Val	p.L231V	ENST00000228918	NM_002342.2	231	Ctg/Gtg	0	
ANO6	196527		GRCh37	12	45814989	45814989	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR233																					ENST00000320560.8:c.2353G>T	p.Val785Phe	p.V785F	ENST00000320560	NM_001025356.2	785	Gtc/Ttc	0	
VEZT	55591		GRCh37	12	95676419	95676419	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR233																					ENST00000436874.1:c.1327G>C	p.Glu443Gln	p.E443Q	ENST00000436874	NM_017599.3	443	Gag/Cag	0	
ZCCHC8	55596		GRCh37	12	122964738	122964738	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR233																					ENST00000336229.4:c.1139A>G	p.Asp380Gly	p.D380G	ENST00000336229	NM_017612.3	380	gAc/gGc	0	
COG3	83548		GRCh37	13	46083919	46083919	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR233																					ENST00000349995.5:c.1687G>C	p.Val563Leu	p.V563L	ENST00000349995	NM_031431.3	563	Gtc/Ctc	0	
MZT1	440145		GRCh37	13	73293130	73293130	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR233																					ENST00000377818.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000377818	NM_001071775.2	62	tCg/tTg	0	
UNC13C	440279		GRCh37	15	54586097	54586097	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR233																					ENST00000260323.11:c.3823T>A	p.Cys1275Ser	p.C1275S	ENST00000260323	NM_001080534.1	1275	Tgt/Agt	0	
LINS			GRCh37	15	101112146	101112146	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR233																					ENST00000314742.8:c.1347G>T	p.Met449Ile	p.M449I	ENST00000314742	NM_001040616.2	449	atG/atT	0	
ITGAM	3684		GRCh37	16	31282398	31282398	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR233																					ENST00000287497.8:c.551A>G	p.Lys184Arg	p.K184R	ENST00000287497		184	aAa/aGa	0	
CCDC102A	92922		GRCh37	16	57562866	57562866	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR233																					ENST00000258214.2:c.224T>C	p.Leu75Pro	p.L75P	ENST00000258214	NM_033212.3	75	cTg/cCg	0	
KRTAP4-11	653240		GRCh37	17	39274291	39274291	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR233																					ENST00000391413.2:c.277A>G	p.Met93Val	p.M93V	ENST00000391413	NM_033059.3	93	Atg/Gtg	0	
MAP4K1	11184		GRCh37	19	39086294	39086294	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR233																					ENST00000591517.1:c.2255C>T	p.Ala752Val	p.A752V	ENST00000591517	NM_007181.4	752	gCg/gTg	0	
SLC9A7	84679		GRCh37	X	46618325	46618325	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR233																					ENST00000328306.4:c.140C>T	p.Ala47Val	p.A47V	ENST00000328306	NM_001257291.1	47	gCg/gTg	0	
CCDC22	28952		GRCh37	X	49098482	49098482	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR233																					ENST00000376227.3:c.229G>T	p.Asp77Tyr	p.D77Y	ENST00000376227	NM_014008.3	77	Gac/Tac	0	
COL4A6	1288		GRCh37	X	107423745	107423745	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR233																					ENST00000372216.4:c.2134G>C	p.Gly712Arg	p.G712R	ENST00000372216	NM_001847.2	712	Gga/Cga	0	
UBR4	23352		GRCh37	1	19419827	19419827	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_119																					ENST00000375254.3:c.14091G>T	p.Lys4697Asn	p.K4697N	ENST00000375254	NM_020765.2	4697	aaG/aaT	0	
FAF1	11124		GRCh37	1	51171561	51171561	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_119																					ENST00000396153.2:c.554C>T	p.Ala185Val	p.A185V	ENST00000396153	NM_007051.2	185	gCc/gTc	0	
SLC1A7	6512		GRCh37	1	53553833	53553833	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_119																					ENST00000371494.4:c.1531T>G	p.Cys511Gly	p.C511G	ENST00000371494	NM_006671.4	511	Tgt/Ggt	0	
C1orf173			GRCh37	1	75107072	75107072	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_119																					ENST00000326665.5:c.387G>C	p.Lys129Asn	p.K129N	ENST00000326665	NM_001002912.4	129	aaG/aaC	0	
FMO5	2330		GRCh37	1	146658777	146658777	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_119																					ENST00000254090.4:c.1304C>T	p.Thr435Ile	p.T435I	ENST00000254090	NM_001461.3	435	aCc/aTc	0	
RAB13	5872		GRCh37	1	153955077	153955077	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			brca_smc_2018_BB01_119																					ENST00000368575.3:c.415-1G>A		p.X139_splice	ENST00000368575	NM_002870.3	139		0	
NES	10763		GRCh37	1	156646945	156646945	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_119																					ENST00000368223.3:c.112G>C	p.Ala38Pro	p.A38P	ENST00000368223	NM_006617.1	38	Gcg/Ccg	0	
OR6K2	81448		GRCh37	1	158670006	158670006	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_119																					ENST00000359610.2:c.437G>T	p.Ser146Ile	p.S146I	ENST00000359610	NM_001005279.1	146	aGt/aTt	0	
NIT1	4817		GRCh37	1	161089066	161089066	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_119																					ENST00000368009.2:c.241C>A	p.Leu81Met	p.L81M	ENST00000368009	NM_005600.2	81	Ctg/Atg	0	
EIF2D	1939		GRCh37	1	206781616	206781616	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_119																					ENST00000271764.2:c.395T>C	p.Leu132Pro	p.L132P	ENST00000271764	NM_006893.2	132	cTc/cCc	0	
ZNF695	57116		GRCh37	1	247163214	247163214	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_119																					ENST00000339986.7:c.166A>C	p.Ser56Arg	p.S56R	ENST00000339986	NM_020394.4	56	Agt/Cgt	0	
DNAH6	1768		GRCh37	2	84848627	84848627	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_119																					ENST00000237449.6:c.4023C>G	p.His1341Gln	p.H1341Q	ENST00000237449		1341	caC/caG	0	
LCT	3938		GRCh37	2	136575344	136575344	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_119																					ENST00000264162.2:c.1274C>T	p.Thr425Met	p.T425M	ENST00000264162	NM_002299.2	425	aCg/aTg	0	
SCN1A	6323		GRCh37	2	166908275	166908275	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_119																					ENST00000303395.4:c.918T>G	p.Asn306Lys	p.N306K	ENST00000303395		306	aaT/aaG	0	
GULP1	51454		GRCh37	2	189433993	189433993	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_119																					ENST00000359135.3:c.427C>A	p.Gln143Lys	p.Q143K	ENST00000359135		143	Caa/Aaa	0	
PER2	8864		GRCh37	2	239155154	239155154	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_119																					ENST00000254657.3:c.3630C>A	p.Tyr1210Ter	p.Y1210*	ENST00000254657	NM_022817.2	1210	taC/taA	0	
ATP2B2	491		GRCh37	3	10384472	10384472	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_119																					ENST00000352432.4:c.2881T>C	p.Tyr961His	p.Y961H	ENST00000352432		961	Tac/Cac	0	
CD200	4345		GRCh37	3	112063957	112063957	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_119																					ENST00000473539.1:c.318C>G	p.Asn106Lys	p.N106K	ENST00000473539	NM_001004196.2	106	aaC/aaG	0	
PARP15	165631		GRCh37	3	122338669	122338669	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_119																					ENST00000464300.2:c.1042G>A	p.Glu348Lys	p.E348K	ENST00000464300	NM_001113523.1	348	Gaa/Aaa	0	
ZBTB38	253461		GRCh37	3	141163943	141163943	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_119																					ENST00000321464.5:c.2716G>C	p.Asp906His	p.D906H	ENST00000321464		906	Gac/Cac	0	
MCF2L2	23101		GRCh37	3	182941969	182941969	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_119																					ENST00000328913.3:c.2125C>T	p.Leu709Phe	p.L709F	ENST00000328913	NM_015078.2	709	Ctt/Ttt	0	
IDUA	3425		GRCh37	4	994720	994720	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_119																					ENST00000247933.4:c.436A>G	p.Lys146Glu	p.K146E	ENST00000247933	NM_000203.3	146	Aag/Gag	0	
SEMA6A	57556		GRCh37	5	115814237	115814237	+	splice_donor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BB01_119																					ENST00000343348.6:c.1427+1G>C		p.X476_splice	ENST00000343348	NM_020796.3	476		0	
DRD1	1812		GRCh37	5	174869387	174869387	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_119																					ENST00000393752.2:c.716A>G	p.Lys239Arg	p.K239R	ENST00000393752	NM_000794.3	239	aAg/aGg	0	
ARL10	285598		GRCh37	5	175792628	175792628	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_119																					ENST00000310389.5:c.62G>A	p.Gly21Asp	p.G21D	ENST00000310389	NM_173664.4	21	gGc/gAc	0	
ZFP2	80108		GRCh37	5	178359341	178359341	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_119																					ENST00000361362.2:c.1027C>G	p.Gln343Glu	p.Q343E	ENST00000361362	NM_030613.2	343	Caa/Gaa	0	
ELOVL2	54898		GRCh37	6	10995323	10995323	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_119																					ENST00000354666.3:c.422A>C	p.Gln141Pro	p.Q141P	ENST00000354666	NM_017770.3	141	cAg/cCg	0	
DST	667		GRCh37	6	56382013	56382013	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_119																					ENST00000244364.6:c.10471G>A	p.Glu3491Lys	p.E3491K	ENST00000244364	NM_015548.4	3491	Gaa/Aaa	0	
GHRHR	2692		GRCh37	7	31016054	31016054	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_119																					ENST00000326139.2:c.985A>C	p.Lys329Gln	p.K329Q	ENST00000326139	NM_000823.3	329	Aag/Cag	0	
PKD1L1	168507		GRCh37	7	47976537	47976537	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_119																					ENST00000289672.2:c.304A>T	p.Ser102Cys	p.S102C	ENST00000289672	NM_138295.3	102	Agt/Tgt	0	
PTPRZ1	5803		GRCh37	7	121652965	121652965	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_119																					ENST00000393386.2:c.3865A>G	p.Asn1289Asp	p.N1289D	ENST00000393386	NM_001206838.1	1289	Aat/Gat	0	
ZNF800	168850		GRCh37	7	127013851	127013851	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_119																					ENST00000265827.3:c.1539C>A	p.Asn513Lys	p.N513K	ENST00000265827	NM_176814.3	513	aaC/aaA	0	
DEFA6	1671		GRCh37	8	6783443	6783443	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_119																					ENST00000297436.2:c.115C>A	p.Gln39Lys	p.Q39K	ENST00000297436	NM_001926.3	39	Cag/Aag	0	
POP1	10940		GRCh37	8	99169886	99169886	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_119																					ENST00000349693.3:c.2462C>G	p.Pro821Arg	p.P821R	ENST00000349693	NM_015029.2	821	cCc/cGc	0	
PKHD1L1	93035		GRCh37	8	110534985	110534985	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_119																					ENST00000378402.5:c.12196C>T	p.Pro4066Ser	p.P4066S	ENST00000378402	NM_177531.4	4066	Cca/Tca	0	
MUSK	4593		GRCh37	9	113547149	113547149	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_119																					ENST00000374448.4:c.1439C>A	p.Ser480Tyr	p.S480Y	ENST00000374448	NM_005592.3	480	tCc/tAc	0	
RNF224	643596		GRCh37	9	140123294	140123294	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_119																					ENST00000445101.2:c.227C>G	p.Thr76Arg	p.T76R	ENST00000445101	NM_001190228.1	76	aCg/aGg	0	
ANXA11	311		GRCh37	10	81929060	81929060	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_119																					ENST00000372231.3:c.226G>C	p.Gly76Arg	p.G76R	ENST00000372231		76	Ggg/Cgg	0	
NUP98	4928		GRCh37	11	3723756	3723756	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_119																					ENST00000359171.4:c.3449A>T	p.Glu1150Val	p.E1150V	ENST00000359171		1150	gAa/gTa	0	
PTPN5	84867		GRCh37	11	18763836	18763836	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_119																					ENST00000358540.2:c.698C>T	p.Thr233Ile	p.T233I	ENST00000358540	NM_006906.1	233	aCc/aTc	0	
PRKRIR			GRCh37	11	76063815	76063815	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_119																					ENST00000260045.3:c.379C>G	p.Gln127Glu	p.Q127E	ENST00000260045	NM_004705.2	127	Caa/Gaa	0	
TMPRSS13	84000		GRCh37	11	117789327	117789327	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_119																					ENST00000524993.1:c.248A>G	p.Gln83Arg	p.Q83R	ENST00000524993	NM_001077263.2	83	cAg/cGg	0	
SOX5	6660		GRCh37	12	23893897	23893897	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_119																					ENST00000451604.2:c.645G>C	p.Gln215His	p.Q215H	ENST00000451604		215	caG/caC	0	
MUC19	283463		GRCh37	12	40859840	40859840	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_119																					ENST00000454784.4:c.3949G>A	p.Gly1317Ser	p.G1317S	ENST00000454784		1317	Ggt/Agt	0	
ZDHHC17	23390		GRCh37	12	77240440	77240440	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_119																					ENST00000426126.2:c.1488G>A	p.Met496Ile	p.M496I	ENST00000426126	NM_015336.2	496	atG/atA	0	
PROSER1	80209		GRCh37	13	39596472	39596472	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_119																					ENST00000352251.3:c.721G>T	p.Val241Leu	p.V241L	ENST00000352251	NM_025138.4	241	Gta/Tta	0	
PCNXL4			GRCh37	14	60600911	60600911	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_119																					ENST00000406854.1:c.3491C>G	p.Ser1164Ter	p.S1164*	ENST00000406854		1164	tCa/tGa	0	
FAN1	22909		GRCh37	15	31202896	31202896	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_119																					ENST00000362065.4:c.1455C>A	p.His485Gln	p.H485Q	ENST00000362065	NM_014967.4	485	caC/caA	0	
RLBP1	6017		GRCh37	15	89758371	89758371	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_119																					ENST00000268125.5:c.445T>A	p.Ser149Thr	p.S149T	ENST00000268125	NM_000326.4	149	Tct/Act	0	
TICRR	90381		GRCh37	15	90168816	90168816	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_119																					ENST00000268138.7:c.5275G>A	p.Ala1759Thr	p.A1759T	ENST00000268138		1759	Gcc/Acc	0	
TNRC6A	27327		GRCh37	16	24818106	24818106	+	splice_donor_variant	Splice_Site	SNP	G	G	T			brca_smc_2018_BB01_119																					ENST00000395799.3:c.4540+1G>T		p.X1514_splice	ENST00000395799	NM_014494.2	1514		0	
TP53	7157		GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_119																					ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga	0	
NCOR1	9611		GRCh37	17	16068294	16068294	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_119																					ENST00000268712.3:c.617A>C	p.Gln206Pro	p.Q206P	ENST00000268712	NM_006311.3	206	cAa/cCa	0	
ITGB4	3691		GRCh37	17	73727011	73727011	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_119																					ENST00000200181.3:c.1058C>G	p.Ser353Cys	p.S353C	ENST00000200181	NM_000213.3	353	tCc/tGc	0	
EPB41L3	23136		GRCh37	18	5398121	5398121	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_119																					ENST00000341928.2:c.2371A>T	p.Lys791Ter	p.K791*	ENST00000341928	NM_012307.3	791	Aag/Tag	0	
COL5A3	50509		GRCh37	19	10089896	10089896	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_119																					ENST00000264828.3:c.2786G>C	p.Gly929Ala	p.G929A	ENST00000264828	NM_015719.3	929	gGa/gCa	0	
SMARCA4	6597		GRCh37	19	11130334	11130334	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_119																					ENST00000344626.4:c.2573C>T	p.Thr858Met	p.T858M	ENST00000344626	NM_003072.3	858	aCg/aTg	0	
ARHGAP33	115703		GRCh37	19	36279128	36279128	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_119																					ENST00000314737.5:c.3178A>G	p.Arg1060Gly	p.R1060G	ENST00000314737	NM_052948.3	1060	Agg/Ggg	0	
KLK2	3817		GRCh37	19	51381795	51381795	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_119																					ENST00000325321.3:c.766A>T	p.Thr256Ser	p.T256S	ENST00000325321		256	Acc/Tcc	0	
KLK2	3817		GRCh37	19	51381796	51381796	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_119																					ENST00000325321.3:c.767C>T	p.Thr256Ile	p.T256I	ENST00000325321		256	aCc/aTc	0	
NLRP4	147945		GRCh37	19	56382270	56382270	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_119																					ENST00000301295.6:c.2432A>C	p.Tyr811Ser	p.Y811S	ENST00000301295	NM_134444.4	811	tAt/tCt	0	
ANKEF1	63926		GRCh37	20	10019283	10019283	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_119																					ENST00000378380.3:c.334A>T	p.Asn112Tyr	p.N112Y	ENST00000378380	NM_198798.1	112	Aat/Tat	0	
RBL1	5933		GRCh37	20	35696398	35696398	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_119																					ENST00000373664.3:c.482G>A	p.Arg161Gln	p.R161Q	ENST00000373664	NM_002895.3	161	cGg/cAg	0	
ZNRF3	84133		GRCh37	22	29440816	29440816	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_119																					ENST00000544604.2:c.682G>A	p.Val228Met	p.V228M	ENST00000544604	NM_001206998.1	228	Gtg/Atg	0	
RNF215	200312		GRCh37	22	30776335	30776335	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_119																					ENST00000382363.3:c.800C>T	p.Thr267Ile	p.T267I	ENST00000382363	NM_001017981.1	267	aCa/aTa	0	
SPTA1	6708		GRCh37	1	158636153	158636153	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_051																					ENST00000368147.4:c.2173C>T	p.Arg725Ter	p.R725*	ENST00000368147	NM_003126.2	725	Cga/Tga	0	
NEB	4703		GRCh37	2	152363508	152363508	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_051																					ENST00000397345.3:c.23471T>A	p.Leu7824His	p.L7824H	ENST00000397345	NM_001164508.1	7824	cTt/cAt	0	
GIGYF2	26058		GRCh37	2	233651877	233651877	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_051																					ENST00000373563.4:c.550G>C	p.Glu184Gln	p.E184Q	ENST00000373563	NM_001103146.1	184	Gaa/Caa	0	
CLASP2	23122		GRCh37	3	33648143	33648143	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_051																					ENST00000468888.2:c.1637G>T	p.Gly546Val	p.G546V	ENST00000468888		546	gGc/gTc	0	
TBCCD1	55171		GRCh37	3	186272425	186272425	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_051																					ENST00000338733.5:c.1162T>A	p.Ser388Thr	p.S388T	ENST00000338733	NM_018138.3	388	Tcc/Acc	0	
IL31RA	133396		GRCh37	5	55212623	55212623	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_051																					ENST00000447346.2:c.1970G>C	p.Arg657Thr	p.R657T	ENST00000447346	NM_001242636.1	657	aGa/aCa	0	
RSPH9	221421		GRCh37	6	43612951	43612951	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_051																					ENST00000372163.4:c.116A>G	p.Tyr39Cys	p.Y39C	ENST00000372163	NM_152732.4	39	tAc/tGc	0	
RELN	5649		GRCh37	7	103243927	103243927	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_051																					ENST00000428762.1:c.3157G>A	p.Gly1053Arg	p.G1053R	ENST00000428762	NM_005045.3	1053	Ggg/Agg	0	
SRPK2	6733		GRCh37	7	104844177	104844177	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_051																					ENST00000357311.3:c.94C>T	p.Pro32Ser	p.P32S	ENST00000357311	NM_182691.2	32	Cca/Tca	0	
TEX15	56154		GRCh37	8	30695500	30695500	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_051																					ENST00000256246.2:c.7151C>T	p.Thr2384Met	p.T2384M	ENST00000256246	NM_031271.3	2384	aCg/aTg	0	
VPS28	51160		GRCh37	8	145649479	145649479	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_051																					ENST00000292510.4:c.493C>T	p.His165Tyr	p.H165Y	ENST00000292510	NM_016208.3	165	Cac/Tac	0	
SEMA4D	10507		GRCh37	9	91993711	91993711	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_051																					ENST00000356444.2:c.2497T>G	p.Ser833Ala	p.S833A	ENST00000356444		833	Tca/Gca	0	
KIAA0368			GRCh37	9	114145501	114145501	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_051																					ENST00000338205.5:c.3793C>T	p.Arg1265Ter	p.R1265*	ENST00000338205		1265	Cga/Tga	0	
MRPS2	51116		GRCh37	9	138395417	138395417	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_051																					ENST00000241600.5:c.329G>A	p.Arg110His	p.R110H	ENST00000241600	NM_016034.4	110	cGc/cAc	0	
GATA3	2625		GRCh37	10	8111557	8111557	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_051																					ENST00000346208.3:c.1043A>T	p.His348Leu	p.H348L	ENST00000346208		348	cAc/cTc	0	
CDH23	64072		GRCh37	10	73567082	73567082	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_051																					ENST00000224721.6:c.8242C>T	p.Arg2748Cys	p.R2748C	ENST00000224721	NM_022124.5	2748	Cgc/Tgc	0	
LRIT1	26103		GRCh37	10	85992644	85992644	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_051																					ENST00000372105.3:c.911C>G	p.Ser304Cys	p.S304C	ENST00000372105	NM_015613.2	304	tCc/tGc	0	
DKK3	27122		GRCh37	11	11986105	11986105	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_051																					ENST00000326932.4:c.959A>G	p.Glu320Gly	p.E320G	ENST00000326932	NM_013253.4	320	gAg/gGg	0	
OR4C3	256144		GRCh37	11	48347433	48347433	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_051																					ENST00000319856.4:c.941T>C	p.Leu314Pro	p.L314P	ENST00000319856	NM_001004702.1	314	cTg/cCg	0	
FSCB	84075		GRCh37	14	44975835	44975835	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_051																					ENST00000340446.4:c.356C>G	p.Pro119Arg	p.P119R	ENST00000340446	NM_032135.3	119	cCa/cGa	0	
ARID4A	5926		GRCh37	14	58785462	58785462	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_051																					ENST00000355431.3:c.388C>T	p.His130Tyr	p.H130Y	ENST00000355431	NM_002892.3	130	Cat/Tat	0	
HERC2	8924		GRCh37	15	28474724	28474724	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_051																					ENST00000261609.7:c.5002C>T	p.Arg1668Cys	p.R1668C	ENST00000261609	NM_004667.5	1668	Cgc/Tgc	0	
RBL2	5934		GRCh37	16	53468592	53468592	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_051																					ENST00000262133.6:c.124A>G	p.Thr42Ala	p.T42A	ENST00000262133	NM_005611.3	42	Acc/Gcc	0	
CLEC3A	10143		GRCh37	16	78064695	78064695	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_051																					ENST00000575655.1:c.551G>T	p.Arg184Leu	p.R184L	ENST00000575655	NM_005752.4	184	cGc/cTc	0	
ELP5	23587		GRCh37	17	7158117	7158117	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_051																					ENST00000354429.2:c.452G>A	p.Cys151Tyr	p.C151Y	ENST00000354429	NM_203415.1	151	tGt/tAt	0	
MYH1	4619		GRCh37	17	10402103	10402103	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_051																					ENST00000226207.5:c.4021C>A	p.Arg1341Ser	p.R1341S	ENST00000226207	NM_005963.3	1341	Cgc/Agc	0	
KIAA0100	9703		GRCh37	17	26961074	26961074	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_051																					ENST00000528896.2:c.3101T>G	p.Phe1034Cys	p.F1034C	ENST00000528896	NM_014680.3	1034	tTt/tGt	0	
SLC52A3	113278		GRCh37	20	741753	741753	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_051																					ENST00000217254.7:c.1327G>A	p.Gly443Arg	p.G443R	ENST00000217254	NM_033409.3	443	Gga/Aga	0	
RLIM	51132		GRCh37	X	73811622	73811622	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_051																					ENST00000332687.6:c.1528C>T	p.Arg510Ter	p.R510*	ENST00000332687	NM_016120.3	510	Cga/Tga	0	
MAGEE2	139599		GRCh37	X	75003545	75003545	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_051																					ENST00000373359.2:c.1342C>T	p.Arg448Cys	p.R448C	ENST00000373359	NM_138703.4	448	Cgc/Tgc	0	
KANK4	163782		GRCh37	1	62739555	62739555	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR412																					ENST00000371153.4:c.1221G>C	p.Gln407His	p.Q407H	ENST00000371153	NM_181712.4	407	caG/caC	0	
SH3BP5	9467		GRCh37	3	15297788	15297788	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR412																					ENST00000383791.3:c.1173G>C	p.Glu391Asp	p.E391D	ENST00000383791	NM_004844.4	391	gaG/gaC	0	
SH3BP5	9467		GRCh37	3	15298511	15298511	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR412																					ENST00000383791.3:c.999G>C	p.Glu333Asp	p.E333D	ENST00000383791	NM_004844.4	333	gaG/gaC	0	
BAG5	9529		GRCh37	14	104026366	104026366	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR412																					ENST00000299204.4:c.1136T>G	p.Ile379Ser	p.I379S	ENST00000299204	NM_001015048.2	379	aTc/aGc	0	
XAB2	56949		GRCh37	19	7688714	7688714	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR412																					ENST00000358368.4:c.1022G>T	p.Arg341Leu	p.R341L	ENST00000358368	NM_020196.2	341	cGg/cTg	0	
MMEL1	79258		GRCh37	1	2524307	2524307	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR303																					ENST00000378412.3:c.1966G>C	p.Gly656Arg	p.G656R	ENST00000378412		656	Ggc/Cgc	0	
KCNH7	90134		GRCh37	2	163250973	163250973	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR303																					ENST00000332142.5:c.2636C>T	p.Ser879Phe	p.S879F	ENST00000332142	NM_033272.3	879	tCc/tTc	0	
KLHL23	151230		GRCh37	2	170592128	170592128	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR303																					ENST00000272797.4:c.604G>C	p.Glu202Gln	p.E202Q	ENST00000272797	NM_001199290.1	202	Gag/Cag	0	
UGT2B4	7363		GRCh37	4	70355243	70355243	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR303																					ENST00000305107.6:c.916G>T	p.Val306Leu	p.V306L	ENST00000305107	NM_021139.2	306	Gtg/Ttg	0	
OR4A16	81327		GRCh37	11	55111571	55111571	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR303																					ENST00000314721.2:c.895C>A	p.Leu299Ile	p.L299I	ENST00000314721	NM_001005274.1	299	Ctc/Atc	0	
TULP3	7289		GRCh37	12	3046824	3046824	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR303																					ENST00000448120.2:c.952C>T	p.Pro318Ser	p.P318S	ENST00000448120	NM_003324.4	318	Cct/Tct	0	
HOMEZ	57594		GRCh37	14	23746151	23746151	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR303																					ENST00000357460.5:c.286A>G	p.Met96Val	p.M96V	ENST00000357460	NM_020834.2	96	Atg/Gtg	0	
TP53	7157		GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR303																					ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg	0	
SLC14A2	8170		GRCh37	18	43204672	43204672	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR303																					ENST00000255226.6:c.43T>A	p.Ser15Thr	p.S15T	ENST00000255226	NM_007163.3	15	Tcc/Acc	0	
RASIP1	54922		GRCh37	19	49232775	49232775	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR303																					ENST00000222145.4:c.1252G>A	p.Gly418Arg	p.G418R	ENST00000222145	NM_017805.2	418	Ggg/Agg	0	
PADI2	11240		GRCh37	1	17429533	17429533	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_099																					ENST00000375486.4:c.298G>A	p.Glu100Lys	p.E100K	ENST00000375486	NM_007365.2	100	Gag/Aag	0	
EPHB2	2048		GRCh37	1	23233333	23233333	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_099																					ENST00000400191.3:c.2019C>G	p.Ile673Met	p.I673M	ENST00000400191	NM_004442.6	673	atC/atG	0	
NT5C1A	84618		GRCh37	1	40137609	40137609	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_099																					ENST00000235628.1:c.102C>A	p.Tyr34Ter	p.Y34*	ENST00000235628	NM_032526.1	34	taC/taA	0	
HIVEP3	59269		GRCh37	1	42048440	42048440	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_099																					ENST00000247584.5:c.2029G>A	p.Ala677Thr	p.A677T	ENST00000247584		677	Gca/Aca	0	
TIE1	7075		GRCh37	1	43772597	43772597	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000372476.3:c.571G>C	p.Gly191Arg	p.G191R	ENST00000372476	NM_005424.4	191	Ggc/Cgc	0	
PIGK	10026		GRCh37	1	77558171	77558171	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000370812.3:c.1076C>G	p.Pro359Arg	p.P359R	ENST00000370812	NM_005482.2	359	cCg/cGg	0	
KCND3	3752		GRCh37	1	112524762	112524762	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_099																					ENST00000315987.2:c.587C>T	p.Ser196Leu	p.S196L	ENST00000315987	NM_004980.4	196	tCg/tTg	0	
DPM3	54344		GRCh37	1	155112668	155112668	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_099																					ENST00000341298.3:c.49A>T	p.Thr17Ser	p.T17S	ENST00000341298		17	Acc/Tcc	0	
IGSF8	93185		GRCh37	1	160063650	160063650	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000314485.7:c.754C>G	p.Arg252Gly	p.R252G	ENST00000314485	NM_052868.4	252	Cgg/Ggg	0	
FAM129A	116496		GRCh37	1	184765144	184765144	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_099																					ENST00000367511.3:c.1754A>T	p.Asp585Val	p.D585V	ENST00000367511	NM_052966.3	585	gAt/gTt	0	
DIEXF			GRCh37	1	210012356	210012356	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_099																					ENST00000491415.2:c.1165A>T	p.Lys389Ter	p.K389*	ENST00000491415	NM_014388.6	389	Aaa/Taa	0	
SLC35F3	148641		GRCh37	1	234367408	234367408	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_099																					ENST00000366617.3:c.322A>G	p.Asn108Asp	p.N108D	ENST00000366617		108	Aac/Gac	0	
OR14A2	388761		GRCh37	1	247887306	247887306	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_099																					ENST00000366485.1:c.40G>C	p.Gly14Arg	p.G14R	ENST00000366485		14	Ggg/Cgg	0	
OR1C1	26188		GRCh37	1	247920861	247920861	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000408896.2:c.848C>G	p.Pro283Arg	p.P283R	ENST00000408896	NM_012353.2	283	cCg/cGg	0	
GTF3C2	2976		GRCh37	2	27551334	27551334	+	splice_donor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BB01_099																					ENST00000264720.3:c.2256+1G>C		p.X752_splice	ENST00000264720	NM_001035521.2	752		0	
THUMPD2	80745		GRCh37	2	39995587	39995587	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_099																					ENST00000505747.1:c.727G>C	p.Asp243His	p.D243H	ENST00000505747	NM_025264.4	243	Gac/Cac	0	
NMS	129521		GRCh37	2	101097603	101097603	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_099																					ENST00000376865.1:c.388T>G	p.Trp130Gly	p.W130G	ENST00000376865	NM_001011717.1	130	Tgg/Ggg	0	
ABCB11	8647		GRCh37	2	169869888	169869888	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_099																					ENST00000263817.6:c.283G>C	p.Val95Leu	p.V95L	ENST00000263817	NM_003742.2	95	Gtt/Ctt	0	
LRP2	4036		GRCh37	2	170097770	170097770	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_099																					ENST00000263816.3:c.3773A>T	p.Tyr1258Phe	p.Y1258F	ENST00000263816	NM_004525.2	1258	tAt/tTt	0	
TTN	7273		GRCh37	2	179404477	179404477	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_099																					ENST00000591111.1:c.93392C>A	p.Thr31131Asn	p.T31131N	ENST00000591111		31131	aCt/aAt	0	
HECW2	57520		GRCh37	2	197183274	197183274	+	splice_donor_variant	Splice_Site	SNP	A	A	C			brca_smc_2018_BB01_099																					ENST00000260983.3:c.2338+2T>G		p.X780_splice	ENST00000260983	NM_020760.1	780		0	
BOLL	66037		GRCh37	2	198636673	198636673	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_099																					ENST00000392296.4:c.386A>G	p.Tyr129Cys	p.Y129C	ENST00000392296	NM_033030.5	129	tAt/tGt	0	
FAM124B	79843		GRCh37	2	225244559	225244559	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_099																					ENST00000409685.3:c.1099T>A	p.Leu367Met	p.L367M	ENST00000409685	NM_001122779.1	367	Ttg/Atg	0	
GPR149	344758		GRCh37	3	154147133	154147133	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_099																					ENST00000389740.2:c.272T>A	p.Leu91Ter	p.L91*	ENST00000389740	NM_001038705.1	91	tTg/tAg	0	
STIM2	57620		GRCh37	4	26997048	26997048	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000467087.1:c.445G>C	p.Val149Leu	p.V149L	ENST00000467087	NM_020860.3	149	Gtt/Ctt	0	
TBC1D1	23216		GRCh37	4	37903910	37903910	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_099																					ENST00000261439.4:c.194G>A	p.Arg65Gln	p.R65Q	ENST00000261439	NM_015173.3	65	cGg/cAg	0	
AFM	173		GRCh37	4	74350099	74350099	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_099																					ENST00000226355.3:c.262A>T	p.Lys88Ter	p.K88*	ENST00000226355	NM_001133.2	88	Aaa/Taa	0	
SMARCA5	8467		GRCh37	4	144445527	144445527	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_099																					ENST00000283131.3:c.427C>A	p.His143Asn	p.H143N	ENST00000283131	NM_003601.3	143	Cac/Aac	0	
RXFP3	51289		GRCh37	5	33938033	33938033	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_099																					ENST00000330120.3:c.1188C>G	p.Phe396Leu	p.F396L	ENST00000330120	NM_016568.3	396	ttC/ttG	0	
C6	729		GRCh37	5	41203271	41203271	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_099																					ENST00000263413.3:c.62C>A	p.Ala21Asp	p.A21D	ENST00000263413	NM_001115131.2	21	gCc/gAc	0	
AGGF1	55109		GRCh37	5	76357611	76357611	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_099																					ENST00000312916.7:c.1928G>A	p.Gly643Glu	p.G643E	ENST00000312916	NM_018046.4	643	gGa/gAa	0	
FBN2	2201		GRCh37	5	127648440	127648440	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_099																					ENST00000262464.4:c.4765G>T	p.Gly1589Trp	p.G1589W	ENST00000262464	NM_001999.3	1589	Ggg/Tgg	0	
BNIP1	662		GRCh37	5	172571593	172571593	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000351486.5:c.45G>C	p.Glu15Asp	p.E15D	ENST00000351486	NM_001205.2	15	gaG/gaC	0	
ZKSCAN8	7745		GRCh37	6	28121349	28121349	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000330236.6:c.1291G>C	p.Glu431Gln	p.E431Q	ENST00000330236	NM_001278122.1	431	Gag/Cag	0	
TRIM27	5987		GRCh37	6	28872011	28872011	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_099																					ENST00000377199.3:c.1378A>C	p.Thr460Pro	p.T460P	ENST00000377199	NM_006510.4	460	Act/Cct	0	
MAS1L	116511		GRCh37	6	29454601	29454601	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000377127.3:c.1079C>G	p.Ser360Cys	p.S360C	ENST00000377127	NM_052967.1	360	tCt/tGt	0	
DHX16	8449		GRCh37	6	30623309	30623309	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_099																					ENST00000376442.3:c.2564A>C	p.Tyr855Ser	p.Y855S	ENST00000376442	NM_001164239.1	855	tAc/tCc	0	
VWA7	80737		GRCh37	6	31743936	31743936	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_099																					ENST00000375688.4:c.318G>T	p.Glu106Asp	p.E106D	ENST00000375688		106	gaG/gaT	0	
MEP1A	4224		GRCh37	6	46793170	46793170	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_099																					ENST00000230588.4:c.718G>T	p.Gly240Ter	p.G240*	ENST00000230588	NM_005588.2	240	Gga/Tga	0	
COL21A1	81578		GRCh37	6	55933844	55933844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_099																					ENST00000244728.5:c.2091G>C	p.Lys697Asn	p.K697N	ENST00000244728	NM_030820.3	697	aaG/aaC	0	
ADGB	79747		GRCh37	6	147061642	147061642	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_099																					ENST00000397944.3:c.2936A>G	p.Tyr979Cys	p.Y979C	ENST00000397944	NM_024694.3	979	tAt/tGt	0	
CLDN20	49861		GRCh37	6	155596929	155596929	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_099																					ENST00000367165.3:c.76C>G	p.Leu26Val	p.L26V	ENST00000367165	NM_001001346.3	26	Ctg/Gtg	0	
CLDN20	49861		GRCh37	6	155597059	155597059	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_099																					ENST00000367165.3:c.206C>G	p.Ser69Cys	p.S69C	ENST00000367165	NM_001001346.3	69	tCc/tGc	0	
CLDN20	49861		GRCh37	6	155597421	155597421	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_099																					ENST00000367165.3:c.568C>T	p.Pro190Ser	p.P190S	ENST00000367165	NM_001001346.3	190	Cca/Tca	0	
CDK13	8621		GRCh37	7	40132834	40132834	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_099																					ENST00000181839.4:c.3686C>T	p.Ser1229Leu	p.S1229L	ENST00000181839	NM_031267.3	1229	tCg/tTg	0	
CROT	54677		GRCh37	7	87011850	87011850	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_099																					ENST00000331536.3:c.1292T>C	p.Leu431Pro	p.L431P	ENST00000331536	NM_021151.3	431	cTt/cCt	0	
PPP1R9A	55607		GRCh37	7	94539582	94539582	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_099																					ENST00000340694.4:c.157C>T	p.Gln53Ter	p.Q53*	ENST00000340694	NM_001166163.1	53	Cag/Tag	0	
AC083862.1			GRCh37	7	134832802	134832802	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_099																					ENST00000452718.1:c.115G>C	p.Asp39His	p.D39H	ENST00000452718		39	Gac/Cac	0	
DENND2A	27147		GRCh37	7	140225589	140225589	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_099																					ENST00000275884.6:c.2509C>T	p.Leu837Phe	p.L837F	ENST00000275884		837	Ctt/Ttt	0	
PIWIL2	55124		GRCh37	8	22175778	22175778	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_099																					ENST00000356766.6:c.2393A>T	p.Lys798Met	p.K798M	ENST00000356766	NM_018068.3	798	aAg/aTg	0	
EIF4EBP1	1978		GRCh37	8	37888101	37888101	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_099																					ENST00000338825.4:c.10G>A	p.Gly4Ser	p.G4S	ENST00000338825	NM_004095.3	4	Ggc/Agc	0	
UQCRB	7381		GRCh37	8	97245414	97245414	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_099																					ENST00000287022.5:c.61T>C	p.Tyr21His	p.Y21H	ENST00000287022	NM_006294.4	21	Tat/Cat	0	
VPS13B	157680		GRCh37	8	100831696	100831696	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_099																					ENST00000358544.2:c.8753A>C	p.Gln2918Pro	p.Q2918P	ENST00000358544	NM_017890.4	2918	cAa/cCa	0	
KLF10	7071		GRCh37	8	103663834	103663834	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_099																					ENST00000285407.6:c.726G>C	p.Arg242Ser	p.R242S	ENST00000285407	NM_005655.3	242	agG/agC	0	
CSMD3	114788		GRCh37	8	113256682	113256682	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_099																					ENST00000297405.5:c.10343C>A	p.Thr3448Lys	p.T3448K	ENST00000297405	NM_198123.1	3448	aCa/aAa	0	
COL22A1	169044		GRCh37	8	139658922	139658922	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_099																					ENST00000303045.6:c.3451G>C	p.Glu1151Gln	p.E1151Q	ENST00000303045	NM_152888.1	1151	Gag/Cag	0	
TONSL	4796		GRCh37	8	145668129	145668129	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_099																					ENST00000409379.3:c.509T>A	p.Leu170His	p.L170H	ENST00000409379	NM_013432.4	170	cTc/cAc	0	
WNK2	65268		GRCh37	9	96080268	96080268	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_099																					ENST00000297954.4:c.6853A>G	p.Lys2285Glu	p.K2285E	ENST00000297954	NM_001282394.1	2285	Aag/Gag	0	
TOR1B	27348		GRCh37	9	132571251	132571251	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000259339.2:c.709G>C	p.Asp237His	p.D237H	ENST00000259339	NM_014506.1	237	Gac/Cac	0	
PTER	9317		GRCh37	10	16526741	16526741	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_099																					ENST00000378000.1:c.358C>T	p.His120Tyr	p.H120Y	ENST00000378000	NM_001001484.2	120	Cat/Tat	0	
BMPR1A	657		GRCh37	10	88672021	88672021	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_099																					ENST00000372037.3:c.555C>G	p.Ser185Arg	p.S185R	ENST00000372037	NM_004329.2	185	agC/agG	0	
MMS19	64210		GRCh37	10	99240797	99240797	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000370782.2:c.164C>G	p.Ser55Cys	p.S55C	ENST00000370782		55	tCc/tGc	0	
C10orf118			GRCh37	10	115897042	115897042	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_099																					ENST00000369287.3:c.1229A>C	p.Lys410Thr	p.K410T	ENST00000369287	NM_018017.2	410	aAa/aCa	0	
TTC40			GRCh37	10	134680951	134680951	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000368586.5:c.4671C>G	p.Ser1557Arg	p.S1557R	ENST00000368586	NM_001200049.2	1557	agC/agG	0	
OR51H1P			GRCh37	11	4881047	4881047	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_099																					ENST00000322059.1:c.748G>A	p.Val250Met	p.V250M	ENST00000322059		250	Gtg/Atg	0	
MDK	4192		GRCh37	11	46403934	46403934	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_099																					ENST00000359803.3:c.167T>C	p.Phe56Ser	p.F56S	ENST00000359803	NM_001012334.2	56	tTc/tCc	0	
OR4X2	119764		GRCh37	11	48267470	48267470	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_099																					ENST00000302329.3:c.815C>T	p.Ala272Val	p.A272V	ENST00000302329	NM_001004727.1	272	gCg/gTg	0	
ATG2A	23130		GRCh37	11	64679653	64679653	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_099																					ENST00000377264.3:c.991G>A	p.Glu331Lys	p.E331K	ENST00000377264	NM_015104.2	331	Gag/Aag	0	
SF3B2	10992		GRCh37	11	65830878	65830878	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_099																					ENST00000322535.6:c.2093C>G	p.Thr698Ser	p.T698S	ENST00000322535	NM_006842.2	698	aCt/aGt	0	
ALDH3B2	222		GRCh37	11	67433626	67433626	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000349015.3:c.286C>G	p.Leu96Val	p.L96V	ENST00000349015	NM_000695.3	96	Cta/Gta	0	
MYO7A	4647		GRCh37	11	76894176	76894176	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_099																					ENST00000409709.3:c.3349A>C	p.Lys1117Gln	p.K1117Q	ENST00000409709	NM_000260.3	1117	Aaa/Caa	0	
FAT3	120114		GRCh37	11	92568096	92568096	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_099																					ENST00000298047.6:c.9932T>C	p.Val3311Ala	p.V3311A	ENST00000298047		3311	gTg/gCg	0	
MRE11A			GRCh37	11	94180414	94180414	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000323929.3:c.1754C>G	p.Ala585Gly	p.A585G	ENST00000323929	NM_005591.3	585	gCa/gGa	0	
YAP1	10413		GRCh37	11	101985035	101985035	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_099																					ENST00000282441.5:c.482G>A	p.Arg161Gln	p.R161Q	ENST00000282441	NM_001130145.2	161	cGa/cAa	0	
TECTA	7007		GRCh37	11	121008393	121008393	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_099																					ENST00000264037.2:c.3205A>G	p.Arg1069Gly	p.R1069G	ENST00000264037	NM_005422.2	1069	Agg/Ggg	0	
EIF4B	1975		GRCh37	12	53416399	53416399	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_099																					ENST00000262056.9:c.655A>G	p.Ser219Gly	p.S219G	ENST00000262056	NM_001417.4	219	Agc/Ggc	0	
PAN2	9924		GRCh37	12	56718817	56718817	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000425394.2:c.1575C>G	p.Asn525Lys	p.N525K	ENST00000425394	NM_001127460.2	525	aaC/aaG	0	
CTD-2021H9.3			GRCh37	12	71511889	71511889	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_099																					ENST00000549357.1:c.74C>A	p.Pro25Gln	p.P25Q	ENST00000549357		25	cCg/cAg	0	
PPFIA2	8499		GRCh37	12	81741385	81741385	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_099																					ENST00000549396.1:c.2159G>T	p.Ser720Ile	p.S720I	ENST00000549396	NM_003625.3	720	aGt/aTt	0	
DLST	1743		GRCh37	14	75367777	75367777	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000334220.4:c.1068G>C	p.Lys356Asn	p.K356N	ENST00000334220	NM_001933.4	356	aaG/aaC	0	
UNC79	57578		GRCh37	14	94088942	94088942	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_099																					ENST00000393151.2:c.5363T>A	p.Leu1788His	p.L1788H	ENST00000393151		1788	cTc/cAc	0	
FAN1	22909		GRCh37	15	31197497	31197497	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_099																					ENST00000362065.4:c.631C>G	p.Gln211Glu	p.Q211E	ENST00000362065	NM_014967.4	211	Caa/Gaa	0	
SPTBN5	51332		GRCh37	15	42148708	42148708	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_099																					ENST00000320955.6:c.8897C>T	p.Ala2966Val	p.A2966V	ENST00000320955	NM_016642.3	2966	gCc/gTc	0	
ATP8B4	79895		GRCh37	15	50212595	50212595	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_099																					ENST00000284509.6:c.1771G>T	p.Glu591Ter	p.E591*	ENST00000284509	NM_024837.3	591	Gaa/Taa	0	
PDPK1	5170		GRCh37	16	2588116	2588116	+	start_lost	Translation_Start_Site	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000342085.4:c.3G>C	p.Met1?	p.M1?	ENST00000342085	NM_002613.4	1	atG/atC	0	
NMRAL1	57407		GRCh37	16	4513752	4513752	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_099																					ENST00000283429.6:c.629A>C	p.Gln210Pro	p.Q210P	ENST00000283429	NM_020677.3	210	cAg/cCg	0	
DDX28	55794		GRCh37	16	68056941	68056941	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000332395.5:c.165C>G	p.Asn55Lys	p.N55K	ENST00000332395	NM_018380.3	55	aaC/aaG	0	
ZFP90	146198		GRCh37	16	68597735	68597735	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_099																					ENST00000398253.2:c.1045C>T	p.His349Tyr	p.H349Y	ENST00000398253	NM_133458.2	349	Cat/Tat	0	
SF3B3	23450		GRCh37	16	70566446	70566446	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_099																					ENST00000302516.5:c.635A>T	p.Glu212Val	p.E212V	ENST00000302516	NM_012426.4	212	gAg/gTg	0	
MYH3	4621		GRCh37	17	10549052	10549052	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_099																					ENST00000583535.1:c.1113G>T	p.Glu371Asp	p.E371D	ENST00000583535	NM_002470.3	371	gaG/gaT	0	
GIT1	28964		GRCh37	17	27902139	27902139	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_099																					ENST00000225394.3:c.2031G>C	p.Lys677Asn	p.K677N	ENST00000225394	NM_014030.3	677	aaG/aaC	0	
AXIN2	8313		GRCh37	17	63554282	63554282	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_099																					ENST00000307078.5:c.457A>G	p.Thr153Ala	p.T153A	ENST00000307078	NM_004655.3	153	Acc/Gcc	0	
RAB37	326624		GRCh37	17	72741064	72741064	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_099																					ENST00000392613.5:c.485C>T	p.Ala162Val	p.A162V	ENST00000392613	NM_001006638.2	162	gCc/gTc	0	
MEP1B	4225		GRCh37	18	29796960	29796960	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_099																					ENST00000269202.6:c.1766C>G	p.Ser589Cys	p.S589C	ENST00000269202	NM_005925.2	589	tCt/tGt	0	
SMAD7	4092		GRCh37	18	46447806	46447806	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_099																					ENST00000262158.2:c.1217G>C	p.Cys406Ser	p.C406S	ENST00000262158	NM_001190821.1	406	tGc/tCc	0	
CERS4	79603		GRCh37	19	8316051	8316051	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_099																					ENST00000251363.5:c.91C>G	p.Arg31Gly	p.R31G	ENST00000251363	NM_024552.2	31	Cgt/Ggt	0	
DNMT1	1786		GRCh37	19	10305530	10305530	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_099																					ENST00000340748.4:c.46C>A	p.Pro16Thr	p.P16T	ENST00000340748		16	Ccg/Acg	0	
GTPBP3	84705		GRCh37	19	17448426	17448426	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_099																					ENST00000324894.8:c.6G>T	p.Trp2Cys	p.W2C	ENST00000324894	NM_133644.3	2	tgG/tgT	0	
LRP3	4037		GRCh37	19	33693883	33693883	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_099																					ENST00000253193.7:c.251T>C	p.Ile84Thr	p.I84T	ENST00000253193	NM_002333.3	84	aTt/aCt	0	
POU2F2	5452		GRCh37	19	42599799	42599799	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_099																					ENST00000526816.2:c.852C>A	p.Ser284Arg	p.S284R	ENST00000526816		284	agC/agA	0	
NOVA2	4858		GRCh37	19	46443638	46443638	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000263257.5:c.962C>G	p.Ala321Gly	p.A321G	ENST00000263257	NM_002516.2	321	gCc/gGc	0	
ZNF541	84215		GRCh37	19	48041464	48041464	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_099																					ENST00000391901.3:c.3029A>G	p.Tyr1010Cys	p.Y1010C	ENST00000391901	NM_001277075.1	1010	tAc/tGc	0	
SIGLEC9	27180		GRCh37	19	51628608	51628608	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_099																					ENST00000250360.3:c.377T>G	p.Ile126Arg	p.I126R	ENST00000250360	NM_014441.2	126	aTa/aGa	0	
PRKCG	5582		GRCh37	19	54403491	54403491	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_099																					ENST00000263431.3:c.1286G>A	p.Arg429His	p.R429H	ENST00000263431	NM_002739.3	429	cGc/cAc	0	
INSM1	3642		GRCh37	20	20350257	20350257	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_099																					ENST00000310227.1:c.1346C>T	p.Ser449Leu	p.S449L	ENST00000310227	NM_002196.2	449	tCg/tTg	0	
CDK5RAP1	51654		GRCh37	20	31984798	31984798	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000357886.4:c.73C>G	p.Leu25Val	p.L25V	ENST00000357886		25	Ctg/Gtg	0	
CDH4	1002		GRCh37	20	60485544	60485544	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000360469.5:c.1255G>C	p.Asp419His	p.D419H	ENST00000360469	NM_001794.3	419	Gat/Cat	0	
USP16	10600		GRCh37	21	30408646	30408646	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_099																					ENST00000334352.4:c.399A>T	p.Gln133His	p.Q133H	ENST00000334352	NM_001032410.1	133	caA/caT	0	
SETD4	54093		GRCh37	21	37410503	37410503	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_099																					ENST00000332131.4:c.1133T>C	p.Ile378Thr	p.I378T	ENST00000332131	NM_017438.3	378	aTa/aCa	0	
DUSP18	150290		GRCh37	22	31059602	31059602	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_099																					ENST00000334679.3:c.389C>T	p.Ala130Val	p.A130V	ENST00000334679	NM_152511.3	130	gCc/gTc	0	
WWC3	55841		GRCh37	X	10031593	10031593	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_099																					ENST00000380861.4:c.15T>G	p.Asn5Lys	p.N5K	ENST00000380861	NM_015691.3	5	aaT/aaG	0	
CTPS2	56474		GRCh37	X	16608950	16608950	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_099																					ENST00000359276.4:c.1727C>T	p.Ser576Leu	p.S576L	ENST00000359276	NM_175859.1	576	tCa/tTa	0	
ZFX	7543		GRCh37	X	24197838	24197838	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_099																					ENST00000304543.5:c.597C>G	p.Asp199Glu	p.D199E	ENST00000304543		199	gaC/gaG	0	
MAGEB18	286514		GRCh37	X	26157448	26157448	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_099																					ENST00000325250.1:c.346C>T	p.His116Tyr	p.H116Y	ENST00000325250	NM_173699.3	116	Cat/Tat	0	
NLGN3	54413		GRCh37	X	70375079	70375079	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_099																					ENST00000358741.3:c.593G>T	p.Gly198Val	p.G198V	ENST00000358741	NM_181303.1	198	gGt/gTt	0	
CENPI	2491		GRCh37	X	100403002	100403002	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_099																					ENST00000372927.1:c.1946G>T	p.Gly649Val	p.G649V	ENST00000372927	NM_006733.2	649	gGt/gTt	0	
SMARCA1	6594		GRCh37	X	128621000	128621000	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_099																					ENST00000371122.4:c.2212C>G	p.Gln738Glu	p.Q738E	ENST00000371122	NM_003069.3	738	Cag/Gag	0	
PNMA5	114824		GRCh37	X	152159565	152159565	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_099																					ENST00000361887.5:c.578A>G	p.Glu193Gly	p.E193G	ENST00000361887	NM_052926.2	193	gAg/gGg	0	
EPHA5	2044		GRCh37	4	66270123	66270123	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_131																					ENST00000273854.3:c.1759G>C	p.Ala587Pro	p.A587P	ENST00000273854	NM_004439.5	587	Gca/Cca	0	
ZFC3H1	196441		GRCh37	12	72017364	72017364	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_131																					ENST00000378743.3:c.4520C>G	p.Ser1507Cys	p.S1507C	ENST00000378743	NM_144982.4	1507	tCt/tGt	0	
TP53	7157		GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_131																					ENST00000269305.4:c.761T>A	p.Ile254Asn	p.I254N	ENST00000269305	NM_001126112.2	254	aTc/aAc	0	
FLG	2312		GRCh37	1	152280433	152280433	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR383																					ENST00000368799.1:c.6929C>T	p.Ser2310Phe	p.S2310F	ENST00000368799	NM_002016.1	2310	tCc/tTc	0	
CD1D	912		GRCh37	1	158151843	158151843	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR383																					ENST00000368171.3:c.350C>A	p.Ser117Tyr	p.S117Y	ENST00000368171	NM_001766.3	117	tCc/tAc	0	
USP37	57695		GRCh37	2	219411690	219411690	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR383																					ENST00000258399.3:c.554C>G	p.Ser185Cys	p.S185C	ENST00000258399	NM_020935.2	185	tCt/tGt	0	
PIK3CA	5290		GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR383																					ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag	0	
AL033381.1			GRCh37	6	1102333	1102333	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR383																					ENST00000314040.1:c.317G>T	p.Arg106Leu	p.R106L	ENST00000314040		106	cGc/cTc	0	
PRKAG2	51422		GRCh37	7	151262440	151262440	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR383																					ENST00000287878.4:c.1429G>C	p.Asp477His	p.D477H	ENST00000287878	NM_016203.3	477	Gat/Cat	0	
ARFGEF1	10565		GRCh37	8	68170393	68170393	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR383																					ENST00000262215.3:c.2368C>T	p.Leu790Phe	p.L790F	ENST00000262215	NM_006421.4	790	Ctt/Ttt	0	
TAF2	6873		GRCh37	8	120801092	120801092	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR383																					ENST00000378164.2:c.1621C>T	p.Arg541Ter	p.R541*	ENST00000378164	NM_003184.3	541	Cga/Tga	0	
GAS1	2619		GRCh37	9	89561504	89561504	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR383																					ENST00000298743.7:c.191C>T	p.Ala64Val	p.A64V	ENST00000298743	NM_002048.2	64	gCc/gTc	0	
ZFP91	80829		GRCh37	11	58378506	58378506	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR383																					ENST00000316059.6:c.701C>A	p.Thr234Asn	p.T234N	ENST00000316059	NM_001197051.1	234	aCc/aAc	0	
UCP3	7352		GRCh37	11	73718068	73718068	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR383																					ENST00000314032.4:c.20C>T	p.Ser7Leu	p.S7L	ENST00000314032	NM_003356.3	7	tCa/tTa	0	
NEU3	10825		GRCh37	11	74705701	74705701	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR383																					ENST00000294064.4:c.242G>A	p.Arg81Lys	p.R81K	ENST00000294064	NM_006656.5	81	aGg/aAg	0	
NTN4	59277		GRCh37	12	96077432	96077432	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR383																					ENST00000343702.4:c.1236C>G	p.Phe412Leu	p.F412L	ENST00000343702	NM_021229.3	412	ttC/ttG	0	
C12orf55			GRCh37	12	97102497	97102497	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR383																					ENST00000524981.4:c.6640G>A	p.Ala2214Thr	p.A2214T	ENST00000524981		2214	Gct/Act	0	
CRYL1	51084		GRCh37	13	20987454	20987454	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR383																					ENST00000298248.7:c.706G>A	p.Gly236Arg	p.G236R	ENST00000298248	NM_015974.2	236	Gga/Aga	0	
ZNF106	64397		GRCh37	15	42734330	42734330	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR383																					ENST00000263805.4:c.3635T>A	p.Val1212Glu	p.V1212E	ENST00000263805	NM_022473.1	1212	gTg/gAg	0	
ERN2	10595		GRCh37	16	23712018	23712018	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR383																					ENST00000256797.4:c.1511C>T	p.Pro504Leu	p.P504L	ENST00000256797	NM_033266.3	504	cCg/cTg	0	
KDM8	79831		GRCh37	16	27221805	27221805	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR383																					ENST00000286096.4:c.361C>T	p.Arg121Trp	p.R121W	ENST00000286096	NM_024773.2	121	Cgg/Tgg	0	
AARS	16		GRCh37	16	70316533	70316533	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR383																					ENST00000261772.8:c.134G>A	p.Gly45Asp	p.G45D	ENST00000261772	NM_001605.2	45	gGc/gAc	0	
TP53	7157		GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR383																					ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc	0	
SPAG9	9043		GRCh37	17	49197873	49197873	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR383																					ENST00000262013.7:c.145G>C	p.Glu49Gln	p.E49Q	ENST00000262013	NM_001130528.2	49	Gag/Cag	0	
CLTC	1213		GRCh37	17	57762453	57762453	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR383																					ENST00000269122.3:c.4471G>A	p.Asp1491Asn	p.D1491N	ENST00000269122	NM_004859.3	1491	Gac/Aac	0	
CLTC	1213		GRCh37	17	57762558	57762558	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR383																					ENST00000269122.3:c.4576G>A	p.Glu1526Lys	p.E1526K	ENST00000269122	NM_004859.3	1526	Gag/Aag	0	
CLTC	1213		GRCh37	17	57762559	57762559	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR383																					ENST00000269122.3:c.4577A>C	p.Glu1526Ala	p.E1526A	ENST00000269122	NM_004859.3	1526	gAg/gCg	0	
ABHD3	171586		GRCh37	18	19282458	19282458	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR383																					ENST00000289119.2:c.328G>A	p.Glu110Lys	p.E110K	ENST00000289119	NM_138340.4	110	Gaa/Aaa	0	
PHLPP1	23239		GRCh37	18	60570354	60570354	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR383																					ENST00000262719.5:c.2602G>C	p.Asp868His	p.D868H	ENST00000262719		868	Gac/Cac	0	
TM6SF2	53345		GRCh37	19	19383933	19383933	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR383																					ENST00000389363.4:c.92C>T	p.Ser31Leu	p.S31L	ENST00000389363	NM_001001524.2	31	tCg/tTg	0	
GFY	100507003		GRCh37	19	49930820	49930820	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR383																					ENST00000576655.1:c.1133G>A	p.Arg378Gln	p.R378Q	ENST00000576655	NM_001195256.1	378	cGa/cAa	0	
SIGLEC6	946		GRCh37	19	52034460	52034460	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR383																					ENST00000425629.3:c.381G>C	p.Trp127Cys	p.W127C	ENST00000425629	NM_001245.5	127	tgG/tgC	0	
SIGLEC6	946		GRCh37	19	52034549	52034549	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR383																					ENST00000425629.3:c.292G>A	p.Asp98Asn	p.D98N	ENST00000425629	NM_001245.5	98	Gat/Aat	0	
SIGLEC6	946		GRCh37	19	52034741	52034741	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR383																					ENST00000425629.3:c.100G>A	p.Glu34Lys	p.E34K	ENST00000425629	NM_001245.5	34	Gag/Aag	0	
PEG3	5178		GRCh37	19	57327330	57327330	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR383																					ENST00000326441.9:c.2480G>A	p.Gly827Glu	p.G827E	ENST00000326441	NM_006210.2	827	gGa/gAa	0	
MXRA5	25878		GRCh37	X	3241774	3241774	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR383																					ENST00000217939.6:c.1952G>A	p.Cys651Tyr	p.C651Y	ENST00000217939	NM_015419.3	651	tGt/tAt	0	
RPS6KA6	27330		GRCh37	X	83359527	83359527	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR383																					ENST00000262752.2:c.1594G>C	p.Asp532His	p.D532H	ENST00000262752	NM_014496.4	532	Gac/Cac	0	
CCDC27	148870		GRCh37	1	3679868	3679868	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_079																					ENST00000294600.2:c.1151C>T	p.Ser384Leu	p.S384L	ENST00000294600	NM_152492.2	384	tCa/tTa	0	
SPEN	23013		GRCh37	1	16257998	16257998	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_079																					ENST00000375759.3:c.5263A>T	p.Ser1755Cys	p.S1755C	ENST00000375759	NM_015001.2	1755	Agt/Tgt	0	
MUL1	79594		GRCh37	1	20827343	20827343	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_079																					ENST00000264198.3:c.899G>T	p.Ser300Ile	p.S300I	ENST00000264198	NM_024544.2	300	aGc/aTc	0	
SH3D21	79729		GRCh37	1	36785348	36785348	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_079																					ENST00000453908.2:c.1084C>G	p.Pro362Ala	p.P362A	ENST00000453908	NM_001162530.1	362	Cca/Gca	0	
HIVEP3	59269		GRCh37	1	42047861	42047861	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_079																					ENST00000247584.5:c.2608G>C	p.Glu870Gln	p.E870Q	ENST00000247584		870	Gag/Cag	0	
DMBX1	127343		GRCh37	1	46976788	46976788	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_079																					ENST00000371956.4:c.530C>A	p.Ala177Asp	p.A177D	ENST00000371956	NM_147192.2	177	gCt/gAt	0	
RGS4	5999		GRCh37	1	163044152	163044152	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_079																					ENST00000367909.6:c.420C>G	p.Asn140Lys	p.N140K	ENST00000367909	NM_005613.5	140	aaC/aaG	0	
GRHL1	29841		GRCh37	2	10104418	10104418	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_079																					ENST00000324907.9:c.958C>A	p.His320Asn	p.H320N	ENST00000324907	NM_198182.2	320	Cat/Aat	0	
OTOF	9381		GRCh37	2	26683754	26683754	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_079																					ENST00000272371.2:c.5678T>C	p.Leu1893Pro	p.L1893P	ENST00000272371	NM_194248.2	1893	cTg/cCg	0	
SIX2	10736		GRCh37	2	45236041	45236041	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_079																					ENST00000303077.6:c.209T>G	p.Leu70Arg	p.L70R	ENST00000303077	NM_016932.4	70	cTg/cGg	0	
PEX13	5194		GRCh37	2	61258896	61258896	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_079																					ENST00000295030.5:c.435G>C	p.Met145Ile	p.M145I	ENST00000295030	NM_002618.3	145	atG/atC	0	
CEP68	23177		GRCh37	2	65296757	65296757	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_079																					ENST00000377990.2:c.179G>T	p.Gly60Val	p.G60V	ENST00000377990	NM_015147.2	60	gGg/gTg	0	
MAT2A	4144		GRCh37	2	85770795	85770795	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_079																					ENST00000306434.3:c.1088A>G	p.Asp363Gly	p.D363G	ENST00000306434	NM_005911.5	363	gAt/gGt	0	
CACNA1D	776		GRCh37	3	53844237	53844237	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_079																					ENST00000350061.5:c.6104C>G	p.Thr2035Ser	p.T2035S	ENST00000350061	NM_001128840.2	2035	aCt/aGt	0	
COL6A5	256076		GRCh37	3	130110103	130110103	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_079																					ENST00000312481.7:c.2498T>C	p.Met833Thr	p.M833T	ENST00000312481		833	aTg/aCg	0	
PCOLCE2	26577		GRCh37	3	142567088	142567088	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_079																					ENST00000295992.3:c.419T>A	p.Met140Lys	p.M140K	ENST00000295992	NM_013363.3	140	aTg/aAg	0	
RP11-433C9.2			GRCh37	3	184144678	184144678	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_079																					ENST00000419960.1:c.341G>C	p.Arg114Thr	p.R114T	ENST00000419960		114	aGa/aCa	0	
SH3TC1	54436		GRCh37	4	8239230	8239230	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_079																					ENST00000245105.3:c.3586C>T	p.His1196Tyr	p.H1196Y	ENST00000245105	NM_018986.3	1196	Cac/Tac	0	
RAP1GDS1	5910		GRCh37	4	99300306	99300306	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_079																					ENST00000408927.3:c.500A>T	p.Asn167Ile	p.N167I	ENST00000408927	NM_021159.4	167	aAt/aTt	0	
TSPAN5	10098		GRCh37	4	99397456	99397456	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_079																					ENST00000305798.3:c.625G>T	p.Glu209Ter	p.E209*	ENST00000305798	NM_005723.3	209	Gaa/Taa	0	
TACR3	6870		GRCh37	4	104640789	104640789	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_079																					ENST00000304883.2:c.44G>C	p.Gly15Ala	p.G15A	ENST00000304883	NM_001059.2	15	gGa/gCa	0	
NDST3	9348		GRCh37	4	118975088	118975088	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_079																					ENST00000296499.5:c.23A>T	p.His8Leu	p.H8L	ENST00000296499	NM_004784.2	8	cAc/cTc	0	
FREM3	166752		GRCh37	4	144532546	144532546	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_079																					ENST00000329798.5:c.5914T>A	p.Ser1972Thr	p.S1972T	ENST00000329798	NM_001168235.1	1972	Tcc/Acc	0	
NEK1	4750		GRCh37	4	170523750	170523750	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_079																					ENST00000439128.2:c.32G>C	p.Gly11Ala	p.G11A	ENST00000439128	NM_012224.2	11	gGa/gCa	0	
CCDC152	100129792		GRCh37	5	42783678	42783678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_079																					ENST00000361970.5:c.430G>C	p.Val144Leu	p.V144L	ENST00000361970	NM_001134848.1	144	Gtt/Ctt	0	
APC	324		GRCh37	5	112177305	112177305	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_079																					ENST00000257430.4:c.6014C>G	p.Ser2005Ter	p.S2005*	ENST00000257430	NM_000038.5	2005	tCa/tGa	0	
TAP2	6891		GRCh37	6	32800508	32800508	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_079																					ENST00000374897.2:c.1039G>C	p.Ala347Pro	p.A347P	ENST00000374897	NM_000544.3	347	Gcc/Ccc	0	
LAMA2	3908		GRCh37	6	129837383	129837383	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_079																					ENST00000421865.2:c.9260G>T	p.Cys3087Phe	p.C3087F	ENST00000421865	NM_001079823.1	3087	tGc/tTc	0	
LATS1	9113		GRCh37	6	150001248	150001248	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_079																					ENST00000253339.5:c.2356C>T	p.Pro786Ser	p.P786S	ENST00000253339		786	Cct/Tct	0	
SEMA3A	10371		GRCh37	7	83739881	83739881	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_079																					ENST00000265362.4:c.358G>C	p.Val120Leu	p.V120L	ENST00000265362	NM_006080.2	120	Gta/Cta	0	
MICU3	286097		GRCh37	8	16884790	16884790	+	start_lost	Translation_Start_Site	SNP	T	T	G			brca_smc_2018_BB01_079																					ENST00000318063.5:c.2T>G	p.Met1?	p.M1?	ENST00000318063	NM_181723.2	1	aTg/aGg	0	
IDO1	3620		GRCh37	8	39776350	39776350	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_079																					ENST00000518237.1:c.320T>A	p.Ile107Asn	p.I107N	ENST00000518237	NM_002164.5	107	aTt/aAt	0	
RAB2A	5862		GRCh37	8	61496830	61496830	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_079																					ENST00000262646.7:c.250C>G	p.Leu84Val	p.L84V	ENST00000262646	NM_002865.2	84	Cta/Gta	0	
SLC26A7	115111		GRCh37	8	92301438	92301438	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_079																					ENST00000276609.3:c.268T>C	p.Tyr90His	p.Y90H	ENST00000276609	NM_052832.2	90	Tat/Cat	0	
CDKN2A	1029		GRCh37	9	21974771	21974771	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_079																					ENST00000304494.5:c.56C>T	p.Ala19Val	p.A19V	ENST00000304494	NM_000077.4	19	gCc/gTc	0	
ZNF658	26149		GRCh37	9	40774255	40774255	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_079																					ENST00000602553.1:c.1020T>G	p.His340Gln	p.H340Q	ENST00000602553		340	caT/caG	0	
FOXB2	442425		GRCh37	9	79634692	79634692	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_079																					ENST00000376708.1:c.122A>G	p.Lys41Arg	p.K41R	ENST00000376708	NM_001013735.1	41	aAg/aGg	0	
C9orf129	445577		GRCh37	9	96081409	96081409	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_079																					ENST00000375419.1:c.413G>T	p.Gly138Val	p.G138V	ENST00000375419	NM_001098808.1	138	gGa/gTa	0	
C9orf96			GRCh37	9	136269160	136269160	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_079																					ENST00000371957.3:c.1720G>C	p.Val574Leu	p.V574L	ENST00000371957	NM_153710.4	574	Gtg/Ctg	0	
THNSL1	79896		GRCh37	10	25313198	25313198	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_079																					ENST00000376356.4:c.1046C>T	p.Ser349Leu	p.S349L	ENST00000376356	NM_024838.4	349	tCa/tTa	0	
DNAJB12	54788		GRCh37	10	74103253	74103253	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_079																					ENST00000338820.3:c.430G>C	p.Asp144His	p.D144H	ENST00000338820	NM_001002762.2	144	Gat/Cat	0	
XPNPEP1	7511		GRCh37	10	111640662	111640662	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_079																					ENST00000502935.1:c.1069C>G	p.Pro357Ala	p.P357A	ENST00000502935		357	Ccc/Gcc	0	
ELF5	2001		GRCh37	11	34515073	34515073	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_079																					ENST00000312319.2:c.338T>G	p.Leu113Arg	p.L113R	ENST00000312319	NM_001243081.1	113	cTc/cGc	0	
PC	5091		GRCh37	11	66616826	66616826	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_079																					ENST00000393955.2:c.3163G>T	p.Gly1055Cys	p.G1055C	ENST00000393955	NM_022172.2	1055	Ggc/Tgc	0	
LRP5	4041		GRCh37	11	68125304	68125304	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_079																					ENST00000294304.7:c.675C>G	p.Asp225Glu	p.D225E	ENST00000294304	NM_002335.2	225	gaC/gaG	0	
NUMA1	4926		GRCh37	11	71724722	71724722	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_079																					ENST00000393695.3:c.3827C>T	p.Thr1276Ile	p.T1276I	ENST00000393695	NM_006185.2	1276	aCa/aTa	0	
MFRP	83552		GRCh37	11	119216247	119216247	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_079																					ENST00000449574.2:c.524A>T	p.Gln175Leu	p.Q175L	ENST00000449574		175	cAg/cTg	0	
OVCH1	341350		GRCh37	12	29607777	29607777	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_079																					ENST00000318184.5:c.2527C>G	p.Pro843Ala	p.P843A	ENST00000318184	NM_183378.2	843	Cca/Gca	0	
GXYLT1	283464		GRCh37	12	42538259	42538259	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_079																					ENST00000398675.3:c.190G>A	p.Gly64Ser	p.G64S	ENST00000398675	NM_173601.1	64	Ggc/Agc	0	
GALNT6	11226		GRCh37	12	51773167	51773167	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_079																					ENST00000356317.3:c.399G>C	p.Lys133Asn	p.K133N	ENST00000356317	NM_007210.3	133	aaG/aaC	0	
DNAJC14	85406		GRCh37	12	56221793	56221793	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_079																					ENST00000317269.3:c.650C>T	p.Ser217Phe	p.S217F	ENST00000317269	NM_032364.5	217	tCc/tTc	0	
CNPY2	10330		GRCh37	12	56704833	56704833	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_079																					ENST00000273308.4:c.414G>C	p.Glu138Asp	p.E138D	ENST00000273308	NM_014255.5	138	gaG/gaC	0	
SLC5A8	160728		GRCh37	12	101560458	101560458	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_079																					ENST00000536262.2:c.1340T>C	p.Met447Thr	p.M447T	ENST00000536262	NM_145913.3	447	aTg/aCg	0	
RNASEH2B	79621		GRCh37	13	51522149	51522149	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_079																					ENST00000336617.3:c.643C>G	p.Leu215Val	p.L215V	ENST00000336617	NM_024570.3	215	Ctg/Gtg	0	
FERMT2	10979		GRCh37	14	53325180	53325180	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_079																					ENST00000341590.3:c.1958A>G	p.Tyr653Cys	p.Y653C	ENST00000341590	NM_006832.2	653	tAc/tGc	0	
PRKCH	5583		GRCh37	14	61924007	61924007	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_079																					ENST00000332981.5:c.1074C>G	p.Ile358Met	p.I358M	ENST00000332981	NM_006255.3	358	atC/atG	0	
TTLL5	23093		GRCh37	14	76156560	76156560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_079																					ENST00000298832.9:c.397C>T	p.Arg133Ter	p.R133*	ENST00000298832	NM_015072.4	133	Cga/Tga	0	
TRIP11	9321		GRCh37	14	92471274	92471274	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_079																					ENST00000267622.4:c.3046G>C	p.Ala1016Pro	p.A1016P	ENST00000267622	NM_004239.3	1016	Gct/Cct	0	
IGHV4-59	28392		GRCh37	14	107083664	107083664	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_079																					ENST00000455737.1:c.22C>A	p.Leu8Ile	p.L8I	ENST00000455737		8	Ctt/Att	0	
SPTBN5	51332		GRCh37	15	42159773	42159773	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_079																					ENST00000320955.6:c.6275A>G	p.Glu2092Gly	p.E2092G	ENST00000320955	NM_016642.3	2092	gAg/gGg	0	
MYO1E	4643		GRCh37	15	59515303	59515303	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_079																					ENST00000288235.4:c.865A>T	p.Ser289Cys	p.S289C	ENST00000288235	NM_004998.3	289	Agc/Tgc	0	
ZNF629	23361		GRCh37	16	30794018	30794018	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_079																					ENST00000262525.4:c.1631G>A	p.Arg544His	p.R544H	ENST00000262525	NM_001080417.1	544	cGt/cAt	0	
GSE1	23199		GRCh37	16	85706048	85706048	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_079																					ENST00000253458.7:c.3557G>C	p.Arg1186Thr	p.R1186T	ENST00000253458	NM_014615.3	1186	aGg/aCg	0	
TP53	7157		GRCh37	17	7578448	7578448	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_079																					ENST00000269305.4:c.482C>A	p.Ala161Asp	p.A161D	ENST00000269305	NM_001126112.2	161	gCc/gAc	0	
TBCD	6904		GRCh37	17	80863812	80863812	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_079																					ENST00000355528.4:c.1805T>C	p.Val602Ala	p.V602A	ENST00000355528	NM_005993.4	602	gTc/gCc	0	
ANKRD30B	374860		GRCh37	18	14842916	14842916	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_079																					ENST00000358984.4:c.2743C>T	p.His915Tyr	p.H915Y	ENST00000358984	NM_001145029.1	915	Cac/Tac	0	
DSEL	92126		GRCh37	18	65181779	65181779	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_079																					ENST00000310045.7:c.97G>T	p.Glu33Ter	p.E33*	ENST00000310045	NM_032160.2	33	Gag/Tag	0	
LRRC25	126364		GRCh37	19	18507301	18507301	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_079																					ENST00000339007.3:c.473C>A	p.Ala158Asp	p.A158D	ENST00000339007	NM_145256.2	158	gCc/gAc	0	
CCDC114	93233		GRCh37	19	48807003	48807003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_079																					ENST00000315396.7:c.781G>T	p.Glu261Ter	p.E261*	ENST00000315396	NM_144577.3	261	Gag/Tag	0	
CCDC114	93233		GRCh37	19	48807004	48807004	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_079																					ENST00000315396.7:c.780G>T	p.Gln260His	p.Q260H	ENST00000315396	NM_144577.3	260	caG/caT	0	
SCAF1	58506		GRCh37	19	50156552	50156552	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_079																					ENST00000360565.3:c.2906G>C	p.Arg969Pro	p.R969P	ENST00000360565	NM_021228.2	969	cGg/cCg	0	
IRF3	3661		GRCh37	19	50167951	50167951	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_079																					ENST00000309877.7:c.145G>A	p.Glu49Lys	p.E49K	ENST00000309877		49	Gag/Aag	0	
ZNF611	81856		GRCh37	19	53209339	53209339	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_079																					ENST00000319783.1:c.969C>G	p.Ile323Met	p.I323M	ENST00000319783	NM_030972.3	323	atC/atG	0	
LILRB4	11006		GRCh37	19	55178172	55178172	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_079																					ENST00000391736.1:c.1013C>G	p.Pro338Arg	p.P338R	ENST00000391736	NM_001278430.2	338	cCt/cGt	0	
ZNF460	10794		GRCh37	19	57802647	57802647	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_079																					ENST00000360338.3:c.738C>G	p.His246Gln	p.H246Q	ENST00000360338	NM_006635.3	246	caC/caG	0	
SLC2A10	81031		GRCh37	20	45354495	45354495	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_079																					ENST00000359271.2:c.820G>A	p.Val274Met	p.V274M	ENST00000359271	NM_030777.3	274	Gtg/Atg	0	
CASS4	57091		GRCh37	20	55021004	55021004	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_079																					ENST00000360314.3:c.508C>T	p.Pro170Ser	p.P170S	ENST00000360314	NM_001164116.1	170	Cct/Tct	0	
PIWIL3	440822		GRCh37	22	25115815	25115815	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_079																					ENST00000332271.5:c.2432C>A	p.Thr811Asn	p.T811N	ENST00000332271	NM_001255975.1	811	aCc/aAc	0	
FOXRED2	80020		GRCh37	22	36902334	36902334	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_079																					ENST00000216187.6:c.136G>A	p.Ala46Thr	p.A46T	ENST00000216187	NM_024955.5	46	Gcc/Acc	0	
TLR7	51284		GRCh37	X	12905640	12905640	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_079																					ENST00000380659.3:c.2013T>G	p.Asp671Glu	p.D671E	ENST00000380659	NM_016562.3	671	gaT/gaG	0	
USP26	83844		GRCh37	X	132160819	132160819	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_079																					ENST00000370832.1:c.1430C>A	p.Ser477Ter	p.S477*	ENST00000370832	NM_031907.1	477	tCa/tAa	0	
TFDP3	51270		GRCh37	X	132351537	132351537	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_079																					ENST00000310125.4:c.751G>C	p.Val251Leu	p.V251L	ENST00000310125	NM_016521.2	251	Gtc/Ctc	0	
TMEM63A	9725		GRCh37	1	226041338	226041338	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_053																					ENST00000366835.3:c.1789G>T	p.Val597Phe	p.V597F	ENST00000366835	NM_014698.2	597	Gtc/Ttc	0	
ANKRD36C	400986		GRCh37	2	96646444	96646444	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_053																					ENST00000456556.1:c.683T>C	p.Val228Ala	p.V228A	ENST00000456556		228	gTg/gCg	0	
PDK1	5163		GRCh37	2	173426947	173426947	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BB01_053																					ENST00000282077.3:c.339-1G>C		p.X113_splice	ENST00000282077		113		0	
ZNF804A	91752		GRCh37	2	185802062	185802062	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_053																					ENST00000302277.6:c.1939G>A	p.Glu647Lys	p.E647K	ENST00000302277	NM_194250.1	647	Gag/Aag	0	
FSIP2	401024		GRCh37	2	186666344	186666344	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_053																					ENST00000424728.1:c.12311C>T	p.Ser4104Leu	p.S4104L	ENST00000424728		4104	tCa/tTa	0	
CARD11	84433		GRCh37	7	2979559	2979559	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_053																					ENST00000396946.4:c.688G>A	p.Asp230Asn	p.D230N	ENST00000396946	NM_032415.4	230	Gat/Aat	0	
DGKI	9162		GRCh37	7	137255964	137255964	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_053																					ENST00000288490.5:c.1904A>T	p.Asp635Val	p.D635V	ENST00000288490	NM_004717.2	635	gAt/gTt	0	
CLVS1	157807		GRCh37	8	62212794	62212794	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_053																					ENST00000325897.4:c.408C>A	p.Tyr136Ter	p.Y136*	ENST00000325897	NM_173519.2	136	taC/taA	0	
CSMD3	114788		GRCh37	8	113347704	113347704	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BB01_053																					ENST00000297405.5:c.7020-1G>C		p.X2340_splice	ENST00000297405	NM_198123.1	2340		0	
ZC3H3	23144		GRCh37	8	144557672	144557672	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_053																					ENST00000262577.5:c.1799G>A	p.Gly600Asp	p.G600D	ENST00000262577	NM_015117.2	600	gGc/gAc	0	
AKT1	207		GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_053																					ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag	0	
CBFB	865		GRCh37	16	67070541	67070541	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BB01_053																					ENST00000290858.6:c.166-1G>C		p.X56_splice	ENST00000290858	NM_001755.2	56		0	
OR1A2	26189		GRCh37	17	3101437	3101437	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_053																					ENST00000381951.1:c.625C>T	p.Pro209Ser	p.P209S	ENST00000381951	NM_012352.1	209	Cca/Tca	0	
KLK13	26085		GRCh37	19	51568278	51568278	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_053																					ENST00000595793.1:c.47C>T	p.Ser16Leu	p.S16L	ENST00000595793	NM_015596.1	16	tCa/tTa	0	
CSF2RB	1439		GRCh37	22	37328833	37328833	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_053																					ENST00000403662.3:c.1039G>A	p.Val347Met	p.V347M	ENST00000403662		347	Gtg/Atg	0	
CHST7	56548		GRCh37	X	46433473	46433473	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_053																					ENST00000276055.3:c.107G>A	p.Arg36His	p.R36H	ENST00000276055	NM_019886.2	36	cGc/cAc	0	
P2RY4	5030		GRCh37	X	69478633	69478633	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_053																					ENST00000374519.2:c.842T>C	p.Leu281Pro	p.L281P	ENST00000374519	NM_002565.3	281	cTg/cCg	0	
HAUS7	55559		GRCh37	X	152721044	152721044	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_053																					ENST00000370211.4:c.916C>T	p.Pro306Ser	p.P306S	ENST00000370211	NM_017518.7	306	Ccc/Tcc	0	
FLNA	2316		GRCh37	X	153581696	153581696	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_053																					ENST00000369850.3:c.5990G>A	p.Cys1997Tyr	p.C1997Y	ENST00000369850	NM_001110556.1	1997	tGt/tAt	0	
OMA1	115209		GRCh37	1	59004633	59004633	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000371226.3:c.334G>C	p.Glu112Gln	p.E112Q	ENST00000371226	NM_145243.3	112	Gaa/Caa	0	
PDE4DIP	9659		GRCh37	1	144873898	144873898	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_061																					ENST00000369354.3:c.5059G>A	p.Glu1687Lys	p.E1687K	ENST00000369354		1687	Gag/Aag	0	
MUC1	4582		GRCh37	1	155162047	155162047	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000368395.1:c.86C>G	p.Ser29Cys	p.S29C	ENST00000368395	NM_001204285.1	29	tCt/tGt	0	
MYOC	4653		GRCh37	1	171605088	171605088	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_061																					ENST00000037502.6:c.1492G>A	p.Asp498Asn	p.D498N	ENST00000037502	NM_000261.1	498	Gac/Aac	0	
RASAL2	9462		GRCh37	1	178421607	178421607	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_061																					ENST00000462775.1:c.1385A>T	p.Asn462Ile	p.N462I	ENST00000462775	NM_004841.3	462	aAc/aTc	0	
USH2A	7399		GRCh37	1	216371806	216371806	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000307340.3:c.3932C>T	p.Ser1311Leu	p.S1311L	ENST00000307340	NM_206933.2	1311	tCg/tTg	0	
MIA3	375056		GRCh37	1	222802318	222802318	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000344922.5:c.1756G>C	p.Asp586His	p.D586H	ENST00000344922	NM_198551.2	586	Gac/Cac	0	
ARID4B	51742		GRCh37	1	235359408	235359408	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000264183.3:c.1864G>C	p.Asp622His	p.D622H	ENST00000264183	NM_016374.5	622	Gat/Cat	0	
FAM84A	151354		GRCh37	2	14774671	14774671	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000295092.2:c.568G>C	p.Glu190Gln	p.E190Q	ENST00000295092	NM_145175.2	190	Gag/Cag	0	
RAD51AP2	729475		GRCh37	2	17699067	17699067	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000399080.2:c.616C>G	p.His206Asp	p.H206D	ENST00000399080	NM_001099218.2	206	Cat/Gat	0	
CRIM1	51232		GRCh37	2	36749352	36749352	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_061																					ENST00000280527.2:c.2324G>T	p.Cys775Phe	p.C775F	ENST00000280527	NM_016441.2	775	tGc/tTc	0	
SRBD1	55133		GRCh37	2	45774663	45774663	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000263736.4:c.1764C>G	p.Phe588Leu	p.F588L	ENST00000263736	NM_018079.4	588	ttC/ttG	0	
SMEK2			GRCh37	2	55825607	55825607	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000345102.5:c.866C>G	p.Ser289Cys	p.S289C	ENST00000345102	NM_001122964.1	289	tCt/tGt	0	
GCFC2	6936		GRCh37	2	75929519	75929519	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000321027.3:c.425C>T	p.Ala142Val	p.A142V	ENST00000321027	NM_003203.4	142	gCa/gTa	0	
PSD4	23550		GRCh37	2	113956376	113956376	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000245796.6:c.2684C>G	p.Ser895Cys	p.S895C	ENST00000245796	NM_012455.2	895	tCc/tGc	0	
TTN	7273		GRCh37	2	179469802	179469802	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_061																					ENST00000591111.1:c.49179A>C	p.Lys16393Asn	p.K16393N	ENST00000591111		16393	aaA/aaC	0	
SPATS2L	26010		GRCh37	2	201305452	201305452	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000358677.5:c.733G>C	p.Glu245Gln	p.E245Q	ENST00000358677	NM_015535.2	245	Gaa/Caa	0	
SMARCAL1	50485		GRCh37	2	217303146	217303146	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_061																					ENST00000357276.4:c.1648G>T	p.Glu550Ter	p.E550*	ENST00000357276	NM_014140.3	550	Gaa/Taa	0	
GHRL	51738		GRCh37	3	10328397	10328397	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_061																					ENST00000335542.8:c.325G>A	p.Glu109Lys	p.E109K	ENST00000335542		109	Gag/Aag	0	
WDR6	11180		GRCh37	3	49044877	49044877	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000608424.1:c.13G>C	p.Glu5Gln	p.E5Q	ENST00000608424		5	Gag/Cag	0	
ZNF654	55279		GRCh37	3	88189892	88189892	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000309495.5:c.1432C>G	p.Gln478Glu	p.Q478E	ENST00000309495	NM_018293.2	478	Cag/Gag	0	
DCBLD2	131566		GRCh37	3	98518495	98518495	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_061																					ENST00000326840.6:c.2049G>T	p.Met683Ile	p.M683I	ENST00000326840	NM_080927.3	683	atG/atT	0	
ALDH1L1	10840		GRCh37	3	125869312	125869312	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000393434.2:c.921G>C	p.Lys307Asn	p.K307N	ENST00000393434	NM_012190.3	307	aaG/aaC	0	
MCM2	4171		GRCh37	3	127323910	127323910	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_061																					ENST00000265056.7:c.584T>A	p.Ile195Asn	p.I195N	ENST00000265056	NM_004526.3	195	aTc/aAc	0	
A4GNT	51146		GRCh37	3	137849704	137849704	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_061																					ENST00000236709.3:c.395C>A	p.Ser132Ter	p.S132*	ENST00000236709	NM_016161.2	132	tCa/tAa	0	
CLDN16	10686		GRCh37	3	190106003	190106003	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000264734.2:c.95G>C	p.Arg32Thr	p.R32T	ENST00000264734	NM_006580.3	32	aGa/aCa	0	
YTHDC1	91746		GRCh37	4	69182103	69182103	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_061																					ENST00000344157.4:c.1888C>A	p.Pro630Thr	p.P630T	ENST00000344157	NM_001031732.2	630	Cct/Act	0	
FSTL5	56884		GRCh37	4	162697146	162697146	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000306100.5:c.490G>C	p.Glu164Gln	p.E164Q	ENST00000306100	NM_001128427.2	164	Gaa/Caa	0	
FAT1	2195		GRCh37	4	187532849	187532849	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000441802.2:c.9544C>T	p.Gln3182Ter	p.Q3182*	ENST00000441802	NM_005245.3	3182	Cag/Tag	0	
RXFP3	51289		GRCh37	5	33937741	33937741	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_061																					ENST00000330120.3:c.896C>T	p.Ala299Val	p.A299V	ENST00000330120	NM_016568.3	299	gCg/gTg	0	
CAPSL	133690		GRCh37	5	35904739	35904739	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000397366.1:c.535G>C	p.Glu179Gln	p.E179Q	ENST00000397366	NM_001042625.1	179	Gag/Cag	0	
MAP3K1	4214		GRCh37	5	56178424	56178424	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000399503.3:c.3397G>A	p.Glu1133Lys	p.E1133K	ENST00000399503	NM_005921.1	1133	Gag/Aag	0	
CKMT2	1160		GRCh37	5	80548647	80548647	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000254035.4:c.286G>A	p.Asp96Asn	p.D96N	ENST00000254035		96	Gac/Aac	0	
ST8SIA4	7903		GRCh37	5	100191846	100191846	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_061																					ENST00000231461.5:c.758C>A	p.Thr253Asn	p.T253N	ENST00000231461	NM_005668.5	253	aCt/aAt	0	
FAT2	2196		GRCh37	5	150886864	150886864	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000261800.5:c.12368C>G	p.Ser4123Cys	p.S4123C	ENST00000261800	NM_001447.2	4123	tCt/tGt	0	
HIST1H3F	8968		GRCh37	6	26250440	26250440	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000446824.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000446824	NM_021018.2	132	Cgc/Tgc	0	
FILIP1	27145		GRCh37	6	76024272	76024272	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000237172.7:c.1276G>C	p.Glu426Gln	p.E426Q	ENST00000237172	NM_015687.2	426	Gag/Cag	0	
STX7	8417		GRCh37	6	132789567	132789567	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_061																					ENST00000367941.2:c.585G>T	p.Met195Ile	p.M195I	ENST00000367941	NM_003569.2	195	atG/atT	0	
SGK1	6446		GRCh37	6	134638548	134638548	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_061																					ENST00000367858.5:c.51C>A	p.Phe17Leu	p.F17L	ENST00000367858	NM_001143676.1	17	ttC/ttA	0	
MTHFD1L	25902		GRCh37	6	151270242	151270242	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000367321.3:c.1699G>A	p.Asp567Asn	p.D567N	ENST00000367321	NM_001242768.1	567	Gac/Aac	0	
ADCY1	107		GRCh37	7	45701680	45701680	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000297323.7:c.1472C>G	p.Ser491Ter	p.S491*	ENST00000297323	NM_021116.2	491	tCa/tGa	0	
ZNF117	51351		GRCh37	7	64439129	64439129	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_061																					ENST00000282869.6:c.820G>A	p.Glu274Lys	p.E274K	ENST00000282869	NM_015852.3	274	Gag/Aag	0	
MDH2	4191		GRCh37	7	75684193	75684193	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_061																					ENST00000315758.5:c.112C>A	p.Gln38Lys	p.Q38K	ENST00000315758	NM_005918.2	38	Cag/Aag	0	
RP11-682N22.1			GRCh37	7	96251950	96251950	+	non_coding_transcript_exon_variant	RNA	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000606019.1:n.596G>C		p.*199*	ENST00000606019				0	
PSD3	23362		GRCh37	8	18729732	18729732	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000440756.2:c.642G>C	p.Gln214His	p.Q214H	ENST00000440756		214	caG/caC	0	
ZBTB10	65986		GRCh37	8	81431179	81431179	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000430430.1:c.2300G>A	p.Arg767Lys	p.R767K	ENST00000430430		767	aGa/aAa	0	
WWP1	11059		GRCh37	8	87447904	87447904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_061																					ENST00000265428.4:c.1720C>T	p.Gln574Ter	p.Q574*	ENST00000265428		574	Cag/Tag	0	
ZHX1	11244		GRCh37	8	124265639	124265639	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_061																					ENST00000297857.2:c.2548G>A	p.Glu850Lys	p.E850K	ENST00000297857		850	Gaa/Aaa	0	
KIFC2	90990		GRCh37	8	145698801	145698801	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_061																					ENST00000301332.2:c.2485C>T	p.Leu829Phe	p.L829F	ENST00000301332	NM_145754.2	829	Ctc/Ttc	0	
SLC24A2	25769		GRCh37	9	19577011	19577011	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000341998.2:c.1139G>C	p.Arg380Thr	p.R380T	ENST00000341998	NM_001193288.2	380	aGa/aCa	0	
UBAP2	55833		GRCh37	9	33960836	33960836	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000360802.1:c.786C>G	p.Asp262Glu	p.D262E	ENST00000360802	NM_018449.2	262	gaC/gaG	0	
RNF38	152006		GRCh37	9	36339754	36339754	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000259605.6:c.1543G>C	p.Glu515Gln	p.E515Q	ENST00000259605	NM_022781.4	515	Gaa/Caa	0	
TOMM5	401505		GRCh37	9	37592316	37592316	+	intron_variant	Intron	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000321301.6:c.121+93G>C		p.*41*	ENST00000321301	NM_001001790.2			0	
PTCH1	5727		GRCh37	9	98242323	98242323	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_061																					ENST00000331920.6:c.995G>A	p.Arg332Lys	p.R332K	ENST00000331920	NM_000264.3	332	aGa/aAa	0	
ANKS6	203286		GRCh37	9	101546362	101546362	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_061																					ENST00000353234.4:c.985C>A	p.Pro329Thr	p.P329T	ENST00000353234		329	Cca/Aca	0	
ZNF462	58499		GRCh37	9	109689951	109689951	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000277225.5:c.3758C>G	p.Ser1253Cys	p.S1253C	ENST00000277225		1253	tCt/tGt	0	
CTNNAL1	8727		GRCh37	9	111714726	111714726	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000325551.4:c.1678G>C	p.Glu560Gln	p.E560Q	ENST00000325551	NM_003798.2	560	Gag/Cag	0	
REXO4	57109		GRCh37	9	136279965	136279965	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000371942.3:c.392C>G	p.Ser131Cys	p.S131C	ENST00000371942	NM_001279350.1	131	tCt/tGt	0	
PROSER2	254427		GRCh37	10	11908533	11908533	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000277570.5:c.142G>A	p.Asp48Asn	p.D48N	ENST00000277570	NM_153256.3	48	Gat/Aat	0	
ABCC2	1244		GRCh37	10	101578550	101578550	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_061																					ENST00000370449.4:c.2275A>C	p.Ile759Leu	p.I759L	ENST00000370449	NM_000392.3	759	Ata/Cta	0	
COL17A1	1308		GRCh37	10	105836121	105836121	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_061																					ENST00000353479.5:c.269T>G	p.Leu90Arg	p.L90R	ENST00000353479	NM_000494.3	90	cTg/cGg	0	
B4GALNT4	338707		GRCh37	11	377152	377152	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000329962.6:c.2029G>A	p.Glu677Lys	p.E677K	ENST00000329962	NM_178537.4	677	Gag/Aag	0	
FERMT3	83706		GRCh37	11	63988554	63988554	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000279227.5:c.1624C>G	p.Arg542Gly	p.R542G	ENST00000279227	NM_178443.2	542	Cgc/Ggc	0	
MGP	4256		GRCh37	12	15037770	15037770	+	intron_variant	Intron	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000539261.1:c.62-591C>T		p.*21*	ENST00000539261	NM_000900.3			0	
COX14	84987		GRCh37	12	50513873	50513873	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000317943.2:c.47C>G	p.Ser16Cys	p.S16C	ENST00000317943		16	tCt/tGt	0	
KRT1	3848		GRCh37	12	53071953	53071953	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000252244.3:c.861C>G	p.Ile287Met	p.I287M	ENST00000252244	NM_006121.3	287	atC/atG	0	
HOXC8	3224		GRCh37	12	54403277	54403277	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000040584.4:c.209C>G	p.Ser70Ter	p.S70*	ENST00000040584	NM_022658.3	70	tCa/tGa	0	
ERBB3	2065		GRCh37	12	56478833	56478833	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000267101.3:c.289C>G	p.Leu97Val	p.L97V	ENST00000267101	NM_001982.3	97	Cta/Gta	0	
SHMT2	6472		GRCh37	12	57627875	57627875	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000328923.3:c.1369G>C	p.Glu457Gln	p.E457Q	ENST00000328923	NM_005412.5	457	Gag/Cag	0	
XRCC6BP1			GRCh37	12	58350520	58350520	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000300145.3:c.588C>G	p.Ile196Met	p.I196M	ENST00000300145	NM_033276.2	196	atC/atG	0	
SYT1	6857		GRCh37	12	79611355	79611355	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_061																					ENST00000261205.4:c.56C>T	p.Ala19Val	p.A19V	ENST00000261205	NM_005639.2	19	gCg/gTg	0	
MLNR	2862		GRCh37	13	49794519	49794519	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000218721.1:c.46G>A	p.Glu16Lys	p.E16K	ENST00000218721	NM_001507.1	16	Gag/Aag	0	
GZMH	2999		GRCh37	14	25076435	25076435	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000216338.4:c.517G>C	p.Glu173Gln	p.E173Q	ENST00000216338	NM_033423.4	173	Gaa/Caa	0	
MDGA2	161357		GRCh37	14	47613393	47613393	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_061																					ENST00000399232.2:c.473G>A	p.Arg158Gln	p.R158Q	ENST00000399232	NM_001113498.2	158	cGg/cAg	0	
WDHD1	11169		GRCh37	14	55477139	55477139	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000360586.3:c.229C>G	p.Gln77Glu	p.Q77E	ENST00000360586	NM_007086.3	77	Caa/Gaa	0	
PELI2	57161		GRCh37	14	56763879	56763879	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000267460.4:c.1258G>A	p.Asp420Asn	p.D420N	ENST00000267460	NM_021255.2	420	Gac/Aac	0	
SIX1	6495		GRCh37	14	61113201	61113201	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_061																					ENST00000247182.6:c.655G>A	p.Glu219Lys	p.E219K	ENST00000247182	NM_005982.3	219	Gaa/Aaa	0	
TTC7B	145567		GRCh37	14	91142869	91142869	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_061																					ENST00000328459.6:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000328459	NM_001010854.1	384	Gag/Aag	0	
HERC2	8924		GRCh37	15	28474479	28474479	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_061																					ENST00000261609.7:c.5134G>A	p.Asp1712Asn	p.D1712N	ENST00000261609	NM_004667.5	1712	Gat/Aat	0	
TRPM1	4308		GRCh37	15	31338421	31338421	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000397795.2:c.1714C>T	p.Leu572Phe	p.L572F	ENST00000397795	NM_002420.5	572	Ctt/Ttt	0	
CASC5			GRCh37	15	40915547	40915547	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000346991.5:c.3163G>C	p.Glu1055Gln	p.E1055Q	ENST00000346991		1055	Gag/Cag	0	
MYO5A	4644		GRCh37	15	52708464	52708464	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000399231.3:c.490G>C	p.Glu164Gln	p.E164Q	ENST00000399231	NM_000259.3	164	Gag/Cag	0	
IREB2	3658		GRCh37	15	78786397	78786397	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_061																					ENST00000258886.8:c.2471C>T	p.Thr824Met	p.T824M	ENST00000258886	NM_004136.2	824	aCg/aTg	0	
KIAA1024			GRCh37	15	79749972	79749972	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_061																					ENST00000305428.3:c.1483C>A	p.Gln495Lys	p.Q495K	ENST00000305428	NM_015206.2	495	Cag/Aag	0	
IQGAP1	8826		GRCh37	15	91037995	91037995	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000268182.5:c.4679C>G	p.Ser1560Cys	p.S1560C	ENST00000268182	NM_003870.3	1560	tCt/tGt	0	
CHD2	1106		GRCh37	15	93510703	93510703	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000394196.4:c.2149C>G	p.Leu717Val	p.L717V	ENST00000394196	NM_001271.3	717	Ctc/Gtc	0	
HBQ1	3049		GRCh37	16	230747	230747	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000199708.2:c.178G>C	p.Gly60Arg	p.G60R	ENST00000199708	NM_005331.4	60	Ggc/Cgc	0	
LUC7L	55692		GRCh37	16	249064	249064	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000293872.8:c.684G>C	p.Leu228Phe	p.L228F	ENST00000293872	NM_201412.1	228	ttG/ttC	0	
IFT140	9742		GRCh37	16	1636207	1636207	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_061																					ENST00000426508.2:c.1079G>A	p.Ser360Asn	p.S360N	ENST00000426508	NM_014714.3	360	aGc/aAc	0	
PHKB	5257		GRCh37	16	47630352	47630352	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000323584.5:c.1273G>C	p.Gly425Arg	p.G425R	ENST00000323584	NM_000293.2	425	Ggt/Cgt	0	
KCTD19	146212		GRCh37	16	67328920	67328920	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000304372.5:c.1431C>G	p.His477Gln	p.H477Q	ENST00000304372	NM_001100915.1	477	caC/caG	0	
ZDHHC7	55625		GRCh37	16	85010752	85010752	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000313732.4:c.699C>G	p.Phe233Leu	p.F233L	ENST00000313732	NM_017740.2	233	ttC/ttG	0	
RP11-830F9.6			GRCh37	16	89017515	89017515	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000378347.2:c.989G>C	p.Arg330Thr	p.R330T	ENST00000378347		330	aGa/aCa	0	
ATP2A3	489		GRCh37	17	3831292	3831292	+	intron_variant	Intron	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000352011.3:c.3068+242G>C		p.*1023*	ENST00000352011				0	
ZZEF1	23140		GRCh37	17	3945854	3945854	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_061																					ENST00000381638.2:c.6175G>T	p.Asp2059Tyr	p.D2059Y	ENST00000381638	NM_015113.3	2059	Gat/Tat	0	
MYO15A	51168		GRCh37	17	18023876	18023876	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_061																					ENST00000205890.5:c.1762C>T	p.Arg588Trp	p.R588W	ENST00000205890	NM_016239.3	588	Cgg/Tgg	0	
MED1	5469		GRCh37	17	37564887	37564887	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000300651.6:c.3587C>G	p.Ser1196Ter	p.S1196*	ENST00000300651	NM_004774.3	1196	tCa/tGa	0	
KRT19	3880		GRCh37	17	39680484	39680484	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_061																					ENST00000361566.3:c.859G>T	p.Glu287Ter	p.E287*	ENST00000361566	NM_002276.4	287	Gag/Tag	0	
COL1A1	1277		GRCh37	17	48266814	48266814	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000225964.5:c.2753G>C	p.Arg918Pro	p.R918P	ENST00000225964	NM_000088.3	918	cGt/cCt	0	
ABCA5	23461		GRCh37	17	67286116	67286116	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_061																					ENST00000392676.3:c.1669A>T	p.Met557Leu	p.M557L	ENST00000392676		557	Atg/Ttg	0	
KCNJ16	3773		GRCh37	17	68128901	68128901	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000283936.1:c.673G>A	p.Glu225Lys	p.E225K	ENST00000283936	NM_018658.2	225	Gaa/Aaa	0	
ARMC7	79637		GRCh37	17	73124922	73124922	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000245543.1:c.386G>A	p.Gly129Asp	p.G129D	ENST00000245543	NM_024585.2	129	gGc/gAc	0	
GAA	2548		GRCh37	17	78083830	78083830	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000302262.3:c.1413G>C	p.Glu471Asp	p.E471D	ENST00000302262	NM_000152.3	471	gaG/gaC	0	
CCDC137	339230		GRCh37	17	79638838	79638838	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000329214.8:c.562G>C	p.Glu188Gln	p.E188Q	ENST00000329214	NM_199287.2	188	Gag/Cag	0	
CEP192	55125		GRCh37	18	13053033	13053033	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000506447.1:c.3133G>C	p.Glu1045Gln	p.E1045Q	ENST00000506447	NM_032142.3	1045	Gaa/Caa	0	
ANKRD29	147463		GRCh37	18	21199561	21199561	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_061																					ENST00000592179.1:c.561G>T	p.Gln187His	p.Q187H	ENST00000592179	NM_173505.2	187	caG/caT	0	
TBXA2R	6915		GRCh37	19	3595921	3595921	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_061																					ENST00000375190.4:c.797C>A	p.Ala266Asp	p.A266D	ENST00000375190	NM_001060.5	266	gCc/gAc	0	
VMAC	400673		GRCh37	19	5905043	5905043	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_061																					ENST00000339485.3:c.142G>T	p.Asp48Tyr	p.D48Y	ENST00000339485	NM_001017921.3	48	Gac/Tac	0	
MUC16	94025		GRCh37	19	9057147	9057147	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000397910.4:c.30299C>T	p.Ser10100Leu	p.S10100L	ENST00000397910	NM_024690.2	10100	tCa/tTa	0	
MUC16	94025		GRCh37	19	9068031	9068031	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_061																					ENST00000397910.4:c.19415G>A	p.Gly6472Glu	p.G6472E	ENST00000397910	NM_024690.2	6472	gGg/gAg	0	
EPOR	2057		GRCh37	19	11493879	11493879	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_061																					ENST00000222139.6:c.145G>A	p.Glu49Lys	p.E49K	ENST00000222139	NM_000121.3	49	Gag/Aag	0	
GFY	100507003		GRCh37	19	49930820	49930820	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000576655.1:c.1133G>A	p.Arg378Gln	p.R378Q	ENST00000576655	NM_001195256.1	378	cGa/cAa	0	
LENG9	94059		GRCh37	19	54974556	54974556	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000333834.4:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000333834	NM_198988.1	74	Gag/Cag	0	
LAMP5	24141		GRCh37	20	9510410	9510410	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000246070.2:c.786G>A	p.Met262Ile	p.M262I	ENST00000246070	NM_012261.3	262	atG/atA	0	
STAU1	6780		GRCh37	20	47734614	47734614	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000371856.2:c.1209C>G	p.Phe403Leu	p.F403L	ENST00000371856	NM_017453.2	403	ttC/ttG	0	
ZNFX1	57169		GRCh37	20	47887874	47887874	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000371752.1:c.475G>C	p.Glu159Gln	p.E159Q	ENST00000371752		159	Gag/Cag	0	
UPB1	51733		GRCh37	22	24891399	24891399	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_061																					ENST00000326010.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000326010	NM_016327.2	10	Gag/Tag	0	
SYN3	8224		GRCh37	22	33265080	33265080	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_061																					ENST00000358763.2:c.494G>T	p.Arg165Leu	p.R165L	ENST00000358763	NM_001135774.1	165	cGc/cTc	0	
SOX10	6663		GRCh37	22	38374117	38374117	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_061																					ENST00000360880.2:c.454C>A	p.Pro152Thr	p.P152T	ENST00000360880		152	Ccc/Acc	0	
SUV39H1	6839		GRCh37	X	48565887	48565887	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_061																					ENST00000376687.3:c.1165C>A	p.Pro389Thr	p.P389T	ENST00000376687	NM_003173.2	389	Cct/Act	0	
NUDT10	170685		GRCh37	X	51076195	51076195	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000356450.2:c.378C>G	p.Ile126Met	p.I126M	ENST00000356450		126	atC/atG	0	
WNK3	65267		GRCh37	X	54264889	54264889	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_061																					ENST00000354646.2:c.3900G>C	p.Met1300Ile	p.M1300I	ENST00000354646	NM_020922.4	1300	atG/atC	0	
PFKFB1	5207		GRCh37	X	54978476	54978476	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000375006.3:c.708C>G	p.Ile236Met	p.I236M	ENST00000375006	NM_001271804.1	236	atC/atG	0	
ZXDB	158586		GRCh37	X	57620005	57620005	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_061																					ENST00000374888.1:c.1524C>A	p.His508Gln	p.H508Q	ENST00000374888	NM_007157.3	508	caC/caA	0	
TCEAL7	56849		GRCh37	X	102586554	102586554	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_061																					ENST00000332431.4:c.223G>C	p.Glu75Gln	p.E75Q	ENST00000332431	NM_152278.3	75	Gag/Cag	0	
ATG4A	115201		GRCh37	X	107372031	107372031	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000372232.3:c.142G>A	p.Asp48Asn	p.D48N	ENST00000372232	NM_052936.3	48	Gat/Aat	0	
CTAG2	30848		GRCh37	X	153880763	153880763	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_061																					ENST00000247306.4:c.412C>T	p.Arg138Trp	p.R138W	ENST00000247306	NM_020994.3	138	Cgg/Tgg	0	
ZNF717	100131827		GRCh37	3	75786993	75786993	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR386																					ENST00000400845.3:c.1760A>T	p.Asn587Ile	p.N587I	ENST00000400845		587	aAt/aTt	0	
PIK3CA	5290		GRCh37	3	178916923	178916923	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR386																					ENST00000263967.3:c.310C>T	p.Pro104Ser	p.P104S	ENST00000263967	NM_006218.2	104	Cca/Tca	0	
PIK3CA	5290		GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR386																					ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt	0	
MAP3K1	4214		GRCh37	5	56161201	56161201	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR386																					ENST00000399503.3:c.1070A>G	p.His357Arg	p.H357R	ENST00000399503	NM_005921.1	357	cAt/cGt	0	
HIST1H2BN	8341		GRCh37	6	27806668	27806668	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR386																					ENST00000396980.3:c.229G>A	p.Glu77Lys	p.E77K	ENST00000396980	NM_003520.3	77	Gag/Aag	0	
THSD7A	221981		GRCh37	7	11630207	11630207	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR386																					ENST00000423059.4:c.1333G>A	p.Asp445Asn	p.D445N	ENST00000423059	NM_015204.2	445	Gac/Aac	0	
LEP	3952		GRCh37	7	127894628	127894628	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR386																					ENST00000308868.4:c.316G>A	p.Asp106Asn	p.D106N	ENST00000308868	NM_000230.2	106	Gat/Aat	0	
PTEN	5728		GRCh37	10	89711968	89711968	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR386																					ENST00000371953.3:c.586C>T	p.His196Tyr	p.H196Y	ENST00000371953	NM_000314.4	196	Cac/Tac	0	
BIRC3	330		GRCh37	11	102195698	102195698	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR386																					ENST00000263464.3:c.458A>T	p.Asp153Val	p.D153V	ENST00000263464	NM_001165.4	153	gAt/gTt	0	
SORL1	6653		GRCh37	11	121429462	121429462	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BR386																					ENST00000260197.7:c.2826C>A	p.Cys942Ter	p.C942*	ENST00000260197	NM_003105.5	942	tgC/tgA	0	
SEZ6L2	26470		GRCh37	16	29891271	29891271	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR386																					ENST00000308713.5:c.1487C>A	p.Ala496Asp	p.A496D	ENST00000308713	NM_001114099.2	496	gCc/gAc	0	
TBX6	6911		GRCh37	16	30100530	30100530	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR386																					ENST00000279386.2:c.355C>T	p.Arg119Cys	p.R119C	ENST00000279386		119	Cgc/Tgc	0	
CTCF	10664		GRCh37	16	67645934	67645934	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR386																					ENST00000264010.4:c.862C>G	p.His288Asp	p.H288D	ENST00000264010	NM_006565.3	288	Cac/Gac	0	
TMEM200C	645369		GRCh37	18	5891830	5891830	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR386																					ENST00000383490.2:c.233C>A	p.Ala78Asp	p.A78D	ENST00000383490	NM_001080209.1	78	gCc/gAc	0	
SGTA	6449		GRCh37	19	2767627	2767627	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR386																					ENST00000221566.2:c.158C>T	p.Ala53Val	p.A53V	ENST00000221566	NM_003021.3	53	gCg/gTg	0	
MAGEH1	28986		GRCh37	X	55479309	55479309	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR386																					ENST00000342972.1:c.502C>T	p.His168Tyr	p.H168Y	ENST00000342972	NM_014061.3	168	Cac/Tac	0	
ATP2B3	492		GRCh37	X	152801913	152801913	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR386																					ENST00000263519.4:c.208G>C	p.Gly70Arg	p.G70R	ENST00000263519	NM_001001344.2	70	Ggc/Cgc	0	
KANK4	163782		GRCh37	1	62739058	62739058	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_110																					ENST00000371153.4:c.1718A>G	p.Glu573Gly	p.E573G	ENST00000371153	NM_181712.4	573	gAg/gGg	0	
DNAJC6	9829		GRCh37	1	65830317	65830317	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BB01_110																					ENST00000395325.3:c.23-1G>C		p.X8_splice	ENST00000395325	NM_014787.3	8		0	
COL24A1	255631		GRCh37	1	86342839	86342839	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_110																					ENST00000370571.2:c.2996G>T	p.Gly999Val	p.G999V	ENST00000370571	NM_152890.5	999	gGt/gTt	0	
PRMT6	55170		GRCh37	1	107599986	107599986	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_110																					ENST00000370078.1:c.649G>T	p.Val217Leu	p.V217L	ENST00000370078		217	Gtg/Ttg	0	
C1orf56	54964		GRCh37	1	151020956	151020956	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_110																					ENST00000368926.5:c.633C>G	p.Cys211Trp	p.C211W	ENST00000368926	NM_017860.3	211	tgC/tgG	0	
LCE1A	353131		GRCh37	1	152800087	152800087	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_110																					ENST00000335123.2:c.139A>G	p.Ser47Gly	p.S47G	ENST00000335123	NM_178348.2	47	Agc/Ggc	0	
FMO1	2326		GRCh37	1	171227296	171227296	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_110																					ENST00000354841.4:c.70G>C	p.Glu24Gln	p.E24Q	ENST00000354841	NM_001282692.1	24	Gaa/Caa	0	
GPR52	9293		GRCh37	1	174418297	174418297	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_110																					ENST00000367685.2:c.1048C>A	p.Pro350Thr	p.P350T	ENST00000367685	NM_005684.4	350	Ccc/Acc	0	
HMCN1	83872		GRCh37	1	185902812	185902812	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_110																					ENST00000271588.4:c.1684C>A	p.Leu562Met	p.L562M	ENST00000271588	NM_031935.2	562	Ctg/Atg	0	
BRINP3	339479		GRCh37	1	190424001	190424001	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_110																					ENST00000367462.3:c.20C>G	p.Ala7Gly	p.A7G	ENST00000367462	NM_199051.1	7	gCt/gGt	0	
USH2A	7399		GRCh37	1	216420107	216420107	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_110																					ENST00000307340.3:c.2629C>A	p.Leu877Ile	p.L877I	ENST00000307340	NM_206933.2	877	Ctt/Att	0	
KIDINS220	57498		GRCh37	2	8871203	8871203	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_110																					ENST00000256707.3:c.4963G>A	p.Glu1655Lys	p.E1655K	ENST00000256707	NM_020738.2	1655	Gaa/Aaa	0	
STRN	6801		GRCh37	2	37088343	37088343	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_110																					ENST00000263918.4:c.1601G>C	p.Gly534Ala	p.G534A	ENST00000263918	NM_003162.3	534	gGt/gCt	0	
MSH2	4436		GRCh37	2	47635602	47635602	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_110																					ENST00000233146.2:c.274C>A	p.Leu92Ile	p.L92I	ENST00000233146	NM_000251.2	92	Ctt/Att	0	
RMND5A	64795		GRCh37	2	86992166	86992166	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_110																					ENST00000283632.4:c.538C>T	p.Arg180Trp	p.R180W	ENST00000283632	NM_022780.3	180	Cgg/Tgg	0	
TTN	7273		GRCh37	2	179590731	179590731	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_110																					ENST00000591111.1:c.19367T>G	p.Leu6456Arg	p.L6456R	ENST00000591111		6456	cTt/cGt	0	
FSIP2	401024		GRCh37	2	186626745	186626745	+	splice_donor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BB01_110																					ENST00000424728.1:c.1240+1G>A		p.X414_splice	ENST00000424728		414		0	
C2orf83	56918		GRCh37	2	228497693	228497693	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_110																					ENST00000264387.4:c.109G>A	p.Asp37Asn	p.D37N	ENST00000264387	NM_020161.3	37	Gac/Aac	0	
GPR149	344758		GRCh37	3	154146509	154146509	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_110																					ENST00000389740.2:c.896C>A	p.Thr299Asn	p.T299N	ENST00000389740	NM_001038705.1	299	aCc/aAc	0	
HTT	3064		GRCh37	4	3189519	3189519	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_110																					ENST00000355072.5:c.5131A>G	p.Ile1711Val	p.I1711V	ENST00000355072	NM_002111.6	1711	Att/Gtt	0	
FAM184B	27146		GRCh37	4	17635460	17635460	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_110																					ENST00000265018.3:c.2941G>A	p.Ala981Thr	p.A981T	ENST00000265018	NM_015688.1	981	Gcc/Acc	0	
NPFFR2	10886		GRCh37	4	73013477	73013477	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_110																					ENST00000308744.6:c.1517A>T	p.Gln506Leu	p.Q506L	ENST00000308744	NM_004885.2	506	cAg/cTg	0	
PCDHA3	56145		GRCh37	5	140182741	140182741	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_110																					ENST00000522353.2:c.1959C>A	p.Asp653Glu	p.D653E	ENST00000522353	NM_018906.2	653	gaC/gaA	0	
PCDHGA7	56108		GRCh37	5	140762603	140762603	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_110																					ENST00000518325.1:c.137G>A	p.Gly46Glu	p.G46E	ENST00000518325	NM_018920.2	46	gGa/gAa	0	
FBLL1	345630		GRCh37	5	167956889	167956889	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_110																					ENST00000338333.4:c.380A>T	p.Gln127Leu	p.Q127L	ENST00000338333		127	cAg/cTg	0	
GCM2	9247		GRCh37	6	10877483	10877483	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_110																					ENST00000379491.4:c.233A>G	p.Lys78Arg	p.K78R	ENST00000379491	NM_004752.3	78	aAg/aGg	0	
PPP1R10	5514		GRCh37	6	30569989	30569989	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_110																					ENST00000376511.2:c.2437C>A	p.His813Asn	p.H813N	ENST00000376511	NM_002714.3	813	Cat/Aat	0	
PLEKHG1	57480		GRCh37	6	151161782	151161782	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_110																					ENST00000358517.2:c.3908A>C	p.Asp1303Ala	p.D1303A	ENST00000358517		1303	gAc/gCc	0	
DACT2	168002		GRCh37	6	168708738	168708738	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_110																					ENST00000366795.3:c.1699T>A	p.Tyr567Asn	p.Y567N	ENST00000366795	NM_214462.3	567	Tac/Aac	0	
NCAPG2	54892		GRCh37	7	158482510	158482510	+	splice_donor_variant	Splice_Site	SNP	C	C	A			brca_smc_2018_BB01_110																					ENST00000356309.3:c.672+1G>T		p.X224_splice	ENST00000356309	NM_017760.5	224		0	
PNOC	5368		GRCh37	8	28196656	28196656	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_110																					ENST00000301908.3:c.226G>A	p.Ala76Thr	p.A76T	ENST00000301908	NM_006228.3	76	Gcc/Acc	0	
RIPK2	8767		GRCh37	8	90784960	90784960	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_110																					ENST00000220751.4:c.757G>C	p.Glu253Gln	p.E253Q	ENST00000220751	NM_003821.5	253	Gaa/Caa	0	
CYHR1	50626		GRCh37	8	145677883	145677883	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_110																					ENST00000438911.2:c.556G>A	p.Glu186Lys	p.E186K	ENST00000438911	NM_138496.1	186	Gag/Aag	0	
PPP3CB	5532		GRCh37	10	75230697	75230697	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_110																					ENST00000360663.5:c.835C>G	p.Gln279Glu	p.Q279E	ENST00000360663		279	Caa/Gaa	0	
VCL	7414		GRCh37	10	75830463	75830463	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_110																					ENST00000211998.4:c.275C>G	p.Ala92Gly	p.A92G	ENST00000211998	NM_014000.2	92	gCt/gGt	0	
NEURL1	9148		GRCh37	10	105344769	105344769	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_110																					ENST00000369780.4:c.1126G>T	p.Ala376Ser	p.A376S	ENST00000369780	NM_004210.4	376	Gcc/Tcc	0	
OR4S2	219431		GRCh37	11	55418449	55418449	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_110																					ENST00000312422.2:c.70G>C	p.Val24Leu	p.V24L	ENST00000312422	NM_001004059.2	24	Gtt/Ctt	0	
C2CD3	26005		GRCh37	11	73806373	73806373	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_110																					ENST00000334126.7:c.3060G>C	p.Gln1020His	p.Q1020H	ENST00000334126	NM_001286577.1	1020	caG/caC	0	
TMEM126A	84233		GRCh37	11	85365139	85365139	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_110																					ENST00000304511.2:c.119G>C	p.Gly40Ala	p.G40A	ENST00000304511	NM_032273.3	40	gGa/gCa	0	
SLC8B1	80024		GRCh37	12	113748122	113748122	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_110																					ENST00000202831.3:c.1174G>T	p.Val392Phe	p.V392F	ENST00000202831	NM_024959.2	392	Gtc/Ttc	0	
HAUS4	54930		GRCh37	14	23415835	23415835	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_110																					ENST00000206474.7:c.991G>T	p.Gly331Trp	p.G331W	ENST00000206474		331	Ggg/Tgg	0	
FLRT2	23768		GRCh37	14	86089654	86089654	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_110																					ENST00000330753.4:c.1796T>A	p.Ile599Asn	p.I599N	ENST00000330753	NM_013231.4	599	aTc/aAc	0	
AHNAK2	113146		GRCh37	14	105409187	105409187	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_110																					ENST00000333244.5:c.12601C>A	p.Leu4201Ile	p.L4201I	ENST00000333244	NM_138420.2	4201	Ctc/Atc	0	
AHNAK2	113146		GRCh37	14	105413368	105413368	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_110																					ENST00000333244.5:c.8420C>G	p.Thr2807Arg	p.T2807R	ENST00000333244	NM_138420.2	2807	aCa/aGa	0	
SV2B	9899		GRCh37	15	91769511	91769511	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_110																					ENST00000330276.4:c.18T>G	p.Tyr6Ter	p.Y6*	ENST00000330276		6	taT/taG	0	
MSLNL	401827		GRCh37	16	824851	824851	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_110																					ENST00000442466.1:c.668G>C	p.Gly223Ala	p.G223A	ENST00000442466		223	gGg/gCg	0	
CACNA1H	8912		GRCh37	16	1268574	1268574	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_110																					ENST00000348261.5:c.5810T>C	p.Val1937Ala	p.V1937A	ENST00000348261	NM_021098.2	1937	gTg/gCg	0	
SPNS1	83985		GRCh37	16	28986860	28986860	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_110																					ENST00000311008.11:c.289T>C	p.Ser97Pro	p.S97P	ENST00000311008	NM_032038.2	97	Tct/Cct	0	
CHRNB1	1140		GRCh37	17	7359127	7359127	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_110																					ENST00000306071.2:c.1232T>G	p.Leu411Arg	p.L411R	ENST00000306071	NM_000747.2	411	cTg/cGg	0	
TP53	7157		GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_110																					ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA	0	
MRPL45	84311		GRCh37	17	36476538	36476538	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_110																					ENST00000312513.5:c.547T>G	p.Trp183Gly	p.W183G	ENST00000312513	NM_001278279.1	183	Tgg/Ggg	0	
CDR2L	30850		GRCh37	17	72999328	72999328	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_110																					ENST00000337231.5:c.557G>A	p.Arg186Gln	p.R186Q	ENST00000337231	NM_014603.2	186	cGg/cAg	0	
CBX2	84733		GRCh37	17	77758675	77758675	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_110																					ENST00000310942.4:c.1433G>A	p.Ser478Asn	p.S478N	ENST00000310942	NM_005189.2	478	aGc/aAc	0	
CCDC57	284001		GRCh37	17	80141649	80141649	+	splice_donor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BB01_110																					ENST00000389641.4:c.1211+1G>C		p.X404_splice	ENST00000389641		404		0	
C18orf25	147339		GRCh37	18	43796178	43796178	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_110																					ENST00000282059.6:c.332C>T	p.Ser111Phe	p.S111F	ENST00000282059	NM_145055.3	111	tCc/tTc	0	
SMARCA4	6597		GRCh37	19	11138521	11138521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_110																					ENST00000344626.4:c.3277C>T	p.Arg1093Ter	p.R1093*	ENST00000344626	NM_003072.3	1093	Cga/Tga	0	
NOTCH3	4854		GRCh37	19	15272216	15272216	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_110																					ENST00000263388.2:c.6223C>T	p.Gln2075Ter	p.Q2075*	ENST00000263388	NM_000435.2	2075	Cag/Tag	0	
ZNF841	284371		GRCh37	19	52579302	52579302	+	intron_variant	Intron	SNP	A	A	G			brca_smc_2018_BB01_110																					ENST00000426391.2:c.-77-8439T>C		p.*26*	ENST00000426391				0	
CPXM1	56265		GRCh37	20	2781157	2781157	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_110																					ENST00000380605.2:c.62C>A	p.Ala21Glu	p.A21E	ENST00000380605	NM_001184699.1	21	gCg/gAg	0	
PCED1A	64773		GRCh37	20	2816302	2816302	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_110																					ENST00000360652.2:c.1171G>T	p.Gly391Cys	p.G391C	ENST00000360652	NM_022760.4	391	Ggc/Tgc	0	
HORMAD2	150280		GRCh37	22	30494949	30494949	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_110																					ENST00000336726.6:c.160C>A	p.Pro54Thr	p.P54T	ENST00000336726	NM_152510.2	54	Cca/Aca	0	
CSF2RB	1439		GRCh37	22	37333642	37333642	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_110																					ENST00000403662.3:c.1792C>G	p.His598Asp	p.H598D	ENST00000403662		598	Cac/Gac	0	
PIR	8544		GRCh37	X	15474092	15474092	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_110																					ENST00000380420.5:c.359T>A	p.Leu120Ter	p.L120*	ENST00000380420		120	tTg/tAg	0	
PPEF1	5475		GRCh37	X	18842139	18842139	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_110																					ENST00000361511.4:c.1600C>A	p.Gln534Lys	p.Q534K	ENST00000361511	NM_006240.2	534	Caa/Aaa	0	
EBNA1BP2	10969		GRCh37	1	43630135	43630135	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000236051.2:c.900G>C	p.Lys300Asn	p.K300N	ENST00000236051	NM_006824.2	300	aaG/aaC	0	
ELTD1			GRCh37	1	79412085	79412085	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BR246																					ENST00000370742.3:c.199C>T	p.Gln67Ter	p.Q67*	ENST00000370742	NM_022159.3	67	Cag/Tag	0	
CCDC18	343099		GRCh37	1	93698001	93698001	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR246																					ENST00000343253.7:c.2308G>C	p.Glu770Gln	p.E770Q	ENST00000343253		770	Gag/Cag	0	
HMCN1	83872		GRCh37	1	185891583	185891583	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000271588.4:c.973C>G	p.Arg325Gly	p.R325G	ENST00000271588	NM_031935.2	325	Cga/Gga	0	
SH3YL1	26751		GRCh37	2	233127	233127	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000356150.5:c.507G>C	p.Leu169Phe	p.L169F	ENST00000356150	NM_015677.2	169	ttG/ttC	0	
SEMA4F	10505		GRCh37	2	74900912	74900912	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000357877.2:c.779C>G	p.Ser260Ter	p.S260*	ENST00000357877	NM_004263.4	260	tCa/tGa	0	
TGFBRAP1	9392		GRCh37	2	105924419	105924419	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR246																					ENST00000258449.1:c.340G>A	p.Ala114Thr	p.A114T	ENST00000258449	NM_001142621.1	114	Gcc/Acc	0	
NEB	4703		GRCh37	2	152531041	152531041	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR246																					ENST00000172853.10:c.3937G>A	p.Asp1313Asn	p.D1313N	ENST00000172853		1313	Gat/Aat	0	
CCDC173	129881		GRCh37	2	170537574	170537574	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000447353.1:c.237G>C	p.Lys79Asn	p.K79N	ENST00000447353	NM_001085447.1	79	aaG/aaC	0	
TTN	7273		GRCh37	2	179472373	179472373	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR246																					ENST00000591111.1:c.48119G>A	p.Gly16040Glu	p.G16040E	ENST00000591111		16040	gGa/gAa	0	
CRYBA2	1412		GRCh37	2	219856898	219856898	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR246																					ENST00000295728.2:c.229C>T	p.Arg77Cys	p.R77C	ENST00000295728	NM_057093.1	77	Cgc/Tgc	0	
DOCK10	55619		GRCh37	2	225714229	225714229	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000258390.7:c.2230G>C	p.Asp744His	p.D744H	ENST00000258390	NM_014689.2	744	Gat/Cat	0	
OR6B3	150681		GRCh37	2	240984804	240984804	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR246																					ENST00000319423.4:c.686C>A	p.Pro229His	p.P229H	ENST00000319423	NM_173351.1	229	cCc/cAc	0	
SETD5	55209		GRCh37	3	9486858	9486858	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR246																					ENST00000402198.1:c.1314G>C	p.Glu438Asp	p.E438D	ENST00000402198	NM_001080517.1	438	gaG/gaC	0	
ARHGAP31	57514		GRCh37	3	119132793	119132793	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR246																					ENST00000264245.4:c.2017C>T	p.Pro673Ser	p.P673S	ENST00000264245	NM_020754.2	673	Cca/Tca	0	
UNC5C	8633		GRCh37	4	96137285	96137285	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000453304.1:c.1723G>C	p.Glu575Gln	p.E575Q	ENST00000453304	NM_003728.3	575	Gaa/Caa	0	
RP11-766F14.2			GRCh37	4	100570657	100570657	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000511828.1:c.5149G>C	p.Glu1717Gln	p.E1717Q	ENST00000511828		1717	Gag/Cag	0	
GUCY1B3			GRCh37	4	156726334	156726334	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR246																					ENST00000264424.8:c.1789G>T	p.Glu597Ter	p.E597*	ENST00000264424	NM_000857.2	597	Gaa/Taa	0	
CPE	1363		GRCh37	4	166416768	166416768	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR246																					ENST00000402744.4:c.1271C>T	p.Ser424Leu	p.S424L	ENST00000402744	NM_001873.2	424	tCa/tTa	0	
MCTP1	79772		GRCh37	5	94248567	94248567	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000515393.1:c.1465G>C	p.Gly489Arg	p.G489R	ENST00000515393	NM_024717.4	489	Ggg/Cgg	0	
PCDHGC5	56097		GRCh37	5	140870391	140870391	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR246																					ENST00000252087.1:c.1584G>C	p.Gln528His	p.Q528H	ENST00000252087	NM_018929.2	528	caG/caC	0	
NDST1	3340		GRCh37	5	149929267	149929267	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR246																					ENST00000261797.6:c.2344C>T	p.Arg782Cys	p.R782C	ENST00000261797	NM_001543.4	782	Cgc/Tgc	0	
KIF4B	285643		GRCh37	5	154393585	154393585	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR246																					ENST00000435029.4:c.166G>A	p.Asp56Asn	p.D56N	ENST00000435029	NM_001099293.1	56	Gac/Aac	0	
FANCE	2178		GRCh37	6	35423909	35423909	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR246																					ENST00000229769.2:c.634G>C	p.Glu212Gln	p.E212Q	ENST00000229769	NM_021922.2	212	Gag/Cag	0	
FAM26E			GRCh37	6	116836969	116836969	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR246																					ENST00000368599.3:c.747G>C	p.Lys249Asn	p.K249N	ENST00000368599	NM_153711.2	249	aaG/aaC	0	
KPNA5	3841		GRCh37	6	117013483	117013483	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000356348.1:c.268C>G	p.Gln90Glu	p.Q90E	ENST00000356348	NM_002269.2	90	Cag/Gag	0	
AKAP9	10142		GRCh37	7	91631983	91631983	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR246																					ENST00000356239.3:c.2752G>C	p.Asp918His	p.D918H	ENST00000356239	NM_147185.2	918	Gat/Cat	0	
UBE2H	7328		GRCh37	7	129479143	129479143	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR246																					ENST00000355621.3:c.331C>G	p.Gln111Glu	p.Q111E	ENST00000355621	NM_003344.3	111	Cag/Gag	0	
CSMD1	64478		GRCh37	8	2832075	2832075	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR246																					ENST00000537824.1:c.8638G>A	p.Val2880Ile	p.V2880I	ENST00000537824	NM_033225.5	2880	Gtc/Atc	0	
PPP3CC	5533		GRCh37	8	22386024	22386024	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR246																					ENST00000240139.5:c.1075G>A	p.Glu359Lys	p.E359K	ENST00000240139	NM_005605.4	359	Gag/Aag	0	
DCAF13	25879		GRCh37	8	104427430	104427430	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000297579.5:c.212C>G	p.Ser71Trp	p.S71W	ENST00000297579	NM_015420.6	71	tCg/tGg	0	
FNBP1	23048		GRCh37	9	132720823	132720823	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR246																					ENST00000446176.2:c.355G>A	p.Asp119Asn	p.D119N	ENST00000446176	NM_015033.2	119	Gat/Aat	0	
DBH	1621		GRCh37	9	136509403	136509403	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR246																					ENST00000393056.2:c.985C>T	p.Arg329Cys	p.R329C	ENST00000393056	NM_000787.3	329	Cgc/Tgc	0	
TTC18			GRCh37	10	75101195	75101195	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR246																					ENST00000310715.3:c.754C>T	p.Pro252Ser	p.P252S	ENST00000310715	NM_145170.3	252	Ccc/Tcc	0	
SYNPO2L	79933		GRCh37	10	75413076	75413076	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR246																					ENST00000394810.2:c.593G>A	p.Arg198His	p.R198H	ENST00000394810	NM_001114133.1	198	cGt/cAt	0	
PDE6C	5146		GRCh37	10	95380539	95380539	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR246																					ENST00000371447.3:c.631G>C	p.Glu211Gln	p.E211Q	ENST00000371447	NM_006204.3	211	Gag/Cag	0	
GFRA1	2674		GRCh37	10	117824034	117824034	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR246																					ENST00000355422.6:c.1273C>T	p.Leu425Phe	p.L425F	ENST00000355422	NM_005264.4	425	Ctc/Ttc	0	
METTL10			GRCh37	10	126450929	126450929	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR246																					ENST00000368836.2:c.815C>G	p.Ser272Cys	p.S272C	ENST00000368836	NM_212554.2	272	tCt/tGt	0	
JAKMIP3	282973		GRCh37	10	133930719	133930719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR246																					ENST00000298622.4:c.274G>T	p.Glu92Ter	p.E92*	ENST00000298622	NM_001105521.2	92	Gag/Tag	0	
PRPF19	27339		GRCh37	11	60665327	60665327	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR246																					ENST00000227524.4:c.1408C>T	p.His470Tyr	p.H470Y	ENST00000227524	NM_014502.4	470	Cac/Tac	0	
DDB1	1642		GRCh37	11	61097512	61097512	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR246																					ENST00000301764.7:c.245C>G	p.Ala82Gly	p.A82G	ENST00000301764	NM_001923.4	82	gCg/gGg	0	
CDC42BPG	55561		GRCh37	11	64599906	64599906	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR246																					ENST00000342711.5:c.3081C>G	p.Ile1027Met	p.I1027M	ENST00000342711	NM_017525.2	1027	atC/atG	0	
LTBP3	4054		GRCh37	11	65306703	65306703	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			brca_smc_2018_BR246																					ENST00000301873.5:c.3761-1G>A		p.X1254_splice	ENST00000301873	NM_001130144.2	1254		0	
BANF1	8815		GRCh37	11	65771242	65771242	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			brca_smc_2018_BR246																					ENST00000312175.2:c.269G>C	p.Ter90SerextTer50	p.*90Sext*50	ENST00000312175	NM_003860.3	90	tGa/tCa	0	
SHANK2	22941		GRCh37	11	70742631	70742631	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR246																					ENST00000338508.4:c.1152C>G	p.Ile384Met	p.I384M	ENST00000338508		384	atC/atG	0	
USP28	57646		GRCh37	11	113697995	113697995	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR246																					ENST00000003302.4:c.1147C>A	p.His383Asn	p.H383N	ENST00000003302	NM_020886.2	383	Cac/Aac	0	
KMT2D	8085		GRCh37	12	49444252	49444252	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR246																					ENST00000301067.7:c.3119C>T	p.Ser1040Phe	p.S1040F	ENST00000301067	NM_003482.3	1040	tCc/tTc	0	
FAIM2	23017		GRCh37	12	50281185	50281185	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR246																					ENST00000320634.3:c.785C>G	p.Ala262Gly	p.A262G	ENST00000320634	NM_012306.3	262	gCg/gGg	0	
OR9K2	441639		GRCh37	12	55523604	55523604	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000305377.5:c.52C>G	p.Gln18Glu	p.Q18E	ENST00000305377	NM_001005243.1	18	Caa/Gaa	0	
GNS	2799		GRCh37	12	65113883	65113883	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR246																					ENST00000258145.3:c.1499T>C	p.Leu500Ser	p.L500S	ENST00000258145	NM_002076.3	500	tTa/tCa	0	
CMKLR1	1240		GRCh37	12	108685995	108685995	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR246																					ENST00000312143.7:c.745C>T	p.Arg249Cys	p.R249C	ENST00000312143	NM_001142344.1	249	Cgc/Tgc	0	
TCTN2	79867		GRCh37	12	124192163	124192163	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000303372.5:c.1997C>G	p.Ser666Cys	p.S666C	ENST00000303372	NM_024809.4	666	tCt/tGt	0	
UGGT2	55757		GRCh37	13	96530089	96530089	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000376747.3:c.3250G>C	p.Glu1084Gln	p.E1084Q	ENST00000376747	NM_020121.3	1084	Gaa/Caa	0	
SPTB	6710		GRCh37	14	65241941	65241941	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR246																					ENST00000389721.5:c.4744G>A	p.Asp1582Asn	p.D1582N	ENST00000389721	NM_000347.5	1582	Gac/Aac	0	
UNC79	57578		GRCh37	14	94004378	94004378	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000393151.2:c.1166C>G	p.Ser389Ter	p.S389*	ENST00000393151		389	tCa/tGa	0	
POTEB2	100287399		GRCh37	15	21071208	21071208	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR246																					ENST00000454856.4:c.403C>G	p.Gln135Glu	p.Q135E	ENST00000454856	NM_001277303.1	135	Caa/Gaa	0	
AC009041.2			GRCh37	16	1031267	1031267	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000601510.1:c.16C>G	p.Gln6Glu	p.Q6E	ENST00000601510		6	Cag/Gag	0	
ABCA3	21		GRCh37	16	2338050	2338050	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR246																					ENST00000301732.5:c.2981G>A	p.Gly994Glu	p.G994E	ENST00000301732	NM_001089.2	994	gGa/gAa	0	
CACNG3	10368		GRCh37	16	24372788	24372788	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000005284.3:c.552C>G	p.Phe184Leu	p.F184L	ENST00000005284	NM_006539.3	184	ttC/ttG	0	
PRR14	78994		GRCh37	16	30664332	30664332	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR246																					ENST00000300835.4:c.412G>A	p.Glu138Lys	p.E138K	ENST00000300835	NM_024031.2	138	Gag/Aag	0	
SLC5A2	6524		GRCh37	16	31500538	31500538	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR246																					ENST00000330498.3:c.1544C>T	p.Ser515Leu	p.S515L	ENST00000330498	NM_003041.3	515	tCg/tTg	0	
SMPD3	55512		GRCh37	16	68397457	68397457	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR246																					ENST00000219334.5:c.1651C>G	p.Leu551Val	p.L551V	ENST00000219334	NM_018667.3	551	Ctg/Gtg	0	
KCNG4	93107		GRCh37	16	84255888	84255888	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000308251.4:c.1495G>C	p.Glu499Gln	p.E499Q	ENST00000308251	NM_172347.2	499	Gag/Cag	0	
WFDC1	58189		GRCh37	16	84351946	84351946	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR246																					ENST00000219454.5:c.406G>T	p.Glu136Ter	p.E136*	ENST00000219454	NM_001282467.1	136	Gag/Tag	0	
MPDU1	9526		GRCh37	17	7490789	7490789	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR246																					ENST00000250124.6:c.664C>T	p.Leu222Phe	p.L222F	ENST00000250124	NM_004870.3	222	Ctc/Ttc	0	
TP53	7157		GRCh37	17	7577067	7577067	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			brca_smc_2018_BR246																					ENST00000269305.4:c.871A>T	p.Lys291Ter	p.K291*	ENST00000269305	NM_001126112.2	291	Aag/Tag	0	
C17orf102	400591		GRCh37	17	32906016	32906016	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR246																					ENST00000357754.1:c.284C>T	p.Ser95Leu	p.S95L	ENST00000357754	NM_207454.2	95	tCg/tTg	0	
STAT3	6774		GRCh37	17	40477018	40477018	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR246																					ENST00000264657.5:c.1427C>T	p.Ser476Phe	p.S476F	ENST00000264657	NM_139276.2	476	tCc/tTc	0	
GPATCH8	23131		GRCh37	17	42478581	42478581	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000591680.1:c.864G>C	p.Lys288Asn	p.K288N	ENST00000591680	NM_001002909.2	288	aaG/aaC	0	
KPNB1	3837		GRCh37	17	45752065	45752065	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000290158.4:c.1829C>G	p.Ser610Cys	p.S610C	ENST00000290158	NM_002265.5	610	tCc/tGc	0	
ENOSF1	55556		GRCh37	18	683374	683374	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR246																					ENST00000251101.7:c.748G>A	p.Asp250Asn	p.D250N	ENST00000251101	NM_017512.5	250	Gat/Aat	0	
MYOM1	8736		GRCh37	18	3187614	3187614	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR246																					ENST00000356443.4:c.793C>T	p.His265Tyr	p.H265Y	ENST00000356443	NM_019856.1	265	Cat/Tat	0	
ANKRD12	23253		GRCh37	18	9255279	9255279	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR246																					ENST00000262126.4:c.2014G>A	p.Glu672Lys	p.E672K	ENST00000262126	NM_015208.4	672	Gaa/Aaa	0	
FBXL12	54850		GRCh37	19	9921999	9921999	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR246																					ENST00000247977.4:c.554G>A	p.Gly185Asp	p.G185D	ENST00000247977	NM_017703.1	185	gGt/gAt	0	
ZNF540	163255		GRCh37	19	38102587	38102587	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR246																					ENST00000316433.4:c.406G>C	p.Glu136Gln	p.E136Q	ENST00000316433	NM_001172225.2	136	Gaa/Caa	0	
BCAM	4059		GRCh37	19	45322397	45322397	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000270233.6:c.1421C>G	p.Ser474Cys	p.S474C	ENST00000270233	NM_005581.4	474	tCt/tGt	0	
EML2	24139		GRCh37	19	46124554	46124554	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000245925.3:c.1033G>C	p.Glu345Gln	p.E345Q	ENST00000245925	NM_012155.2	345	Gag/Cag	0	
AC011484.1			GRCh37	19	46998367	46998367	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR246																					ENST00000377652.3:c.478G>T	p.Ala160Ser	p.A160S	ENST00000377652		160	Gcg/Tcg	0	
ZNF320	162967		GRCh37	19	53384308	53384308	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BR246																					ENST00000391781.2:c.1071C>G	p.Tyr357Ter	p.Y357*	ENST00000391781		357	taC/taG	0	
SHISA7	729956		GRCh37	19	55944765	55944765	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR246																					ENST00000376325.4:c.1375G>A	p.Gly459Arg	p.G459R	ENST00000376325	NM_001145176.1	459	Ggg/Agg	0	
SBK2	646643		GRCh37	19	56047535	56047535	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000344158.3:c.127G>C	p.Glu43Gln	p.E43Q	ENST00000344158		43	Gag/Cag	0	
JAG1	182		GRCh37	20	10633231	10633231	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BR246																					ENST00000254958.5:c.771G>A	p.Trp257Ter	p.W257*	ENST00000254958	NM_000214.2	257	tgG/tgA	0	
SALL4	57167		GRCh37	20	50407643	50407643	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR246																					ENST00000217086.4:c.1379C>G	p.Ser460Cys	p.S460C	ENST00000217086	NM_020436.3	460	tCt/tGt	0	
RP1-32I10.10			GRCh37	22	44761819	44761819	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000406912.1:c.197C>G	p.Ser66Cys	p.S66C	ENST00000406912		66	tCt/tGt	0	
PANX2	56666		GRCh37	22	50615649	50615649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR246																					ENST00000395842.2:c.508G>T	p.Glu170Ter	p.E170*	ENST00000395842	NM_052839.3	170	Gag/Tag	0	
USP9X	8239		GRCh37	X	41003785	41003785	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR246																					ENST00000324545.8:c.1325A>G	p.His442Arg	p.H442R	ENST00000324545	NM_001039590.2	442	cAt/cGt	0	
TEX13B	56156		GRCh37	X	107224728	107224728	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR246																					ENST00000302917.1:c.521G>A	p.Gly174Glu	p.G174E	ENST00000302917	NM_031273.2	174	gGa/gAa	0	
GPR50	9248		GRCh37	X	150348412	150348412	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR246																					ENST00000218316.3:c.357C>G	p.Ile119Met	p.I119M	ENST00000218316	NM_004224.3	119	atC/atG	0	
ZC3H12A	80149		GRCh37	1	37947335	37947335	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR414																					ENST00000373087.6:c.717C>G	p.Ile239Met	p.I239M	ENST00000373087	NM_025079.2	239	atC/atG	0	
PTPN22	26191		GRCh37	1	114380538	114380538	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR414																					ENST00000359785.5:c.1484C>A	p.Ala495Glu	p.A495E	ENST00000359785	NM_015967.5	495	gCa/gAa	0	
LAMB3	3914		GRCh37	1	209800734	209800734	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BR414																					ENST00000356082.4:c.1479C>A	p.Cys493Ter	p.C493*	ENST00000356082	NM_000228.2	493	tgC/tgA	0	
LRP1B	53353		GRCh37	2	140990837	140990837	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR414																					ENST00000389484.3:c.13718G>A	p.Arg4573Gln	p.R4573Q	ENST00000389484	NM_018557.2	4573	cGa/cAa	0	
THRB	7068		GRCh37	3	24169043	24169043	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR414																					ENST00000356447.4:c.1091A>G	p.Asn364Ser	p.N364S	ENST00000356447	NM_001128177.1	364	aAc/aGc	0	
ARPP21	10777		GRCh37	3	35835297	35835297	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR414																					ENST00000187397.4:c.2286G>T	p.Met762Ile	p.M762I	ENST00000187397	NM_016300.4	762	atG/atT	0	
SETD2	29072		GRCh37	3	47162662	47162662	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR414																					ENST00000409792.3:c.3464A>G	p.Asn1155Ser	p.N1155S	ENST00000409792	NM_014159.6	1155	aAt/aGt	0	
KNG1	3827		GRCh37	3	186435374	186435374	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR414																					ENST00000265023.4:c.43C>A	p.Leu15Ile	p.L15I	ENST00000265023	NM_001102416.2	15	Cta/Ata	0	
FGF10	2255		GRCh37	5	44305114	44305114	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR414																					ENST00000264664.4:c.610A>G	p.Met204Val	p.M204V	ENST00000264664	NM_004465.1	204	Atg/Gtg	0	
AC138517.1			GRCh37	5	138852222	138852222	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR414																					ENST00000593907.1:c.115G>C	p.Val39Leu	p.V39L	ENST00000593907		39	Gtt/Ctt	0	
TDRD6	221400		GRCh37	6	46658993	46658993	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR414																					ENST00000316081.6:c.3128A>C	p.Lys1043Thr	p.K1043T	ENST00000316081	NM_001010870.2	1043	aAg/aCg	0	
ME1	4199		GRCh37	6	84108096	84108096	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR414																					ENST00000369705.3:c.352C>T	p.Arg118Trp	p.R118W	ENST00000369705	NM_002395.4	118	Cgg/Tgg	0	
ROS1	6098		GRCh37	6	117704517	117704517	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR414																					ENST00000368508.3:c.2459T>G	p.Leu820Arg	p.L820R	ENST00000368508	NM_002944.2	820	cTt/cGt	0	
FEZF1	389549		GRCh37	7	121943753	121943753	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR414																					ENST00000442488.2:c.739G>T	p.Asp247Tyr	p.D247Y	ENST00000442488	NM_001160264.1	247	Gat/Tat	0	
PIGO	84720		GRCh37	9	35094340	35094340	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR414																					ENST00000378617.3:c.528C>G	p.Phe176Leu	p.F176L	ENST00000378617	NM_032634.3	176	ttC/ttG	0	
FANCC	2176		GRCh37	9	97864002	97864002	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR414																					ENST00000289081.3:c.1664G>A	p.Arg555Gln	p.R555Q	ENST00000289081	NM_000136.2	555	cGa/cAa	0	
TSC1	7248		GRCh37	9	135771828	135771828	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR414																					ENST00000298552.3:c.3289C>T	p.Arg1097Cys	p.R1097C	ENST00000298552	NM_001162426.1	1097	Cgt/Tgt	0	
ANK3	288		GRCh37	10	61962759	61962759	+	splice_donor_variant	Splice_Site	SNP	C	C	T			brca_smc_2018_BR414																					ENST00000280772.2:c.1392+1G>A		p.X464_splice	ENST00000280772	NM_020987.3	464		0	
MRGPRE	116534		GRCh37	11	3249194	3249194	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR414																					ENST00000389832.5:c.836G>T	p.Arg279Met	p.R279M	ENST00000389832		279	aGg/aTg	0	
OR5T3	390154		GRCh37	11	56020556	56020556	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR414																					ENST00000303059.3:c.881C>G	p.Ser294Cys	p.S294C	ENST00000303059	NM_001004747.1	294	tCc/tGc	0	
MAP4K2	5871		GRCh37	11	64559703	64559703	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR414																					ENST00000294066.2:c.1855C>A	p.Pro619Thr	p.P619T	ENST00000294066	NM_004579.3	619	Ccc/Acc	0	
OR8B12	219858		GRCh37	11	124413493	124413493	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR414																					ENST00000306842.2:c.58C>A	p.Pro20Thr	p.P20T	ENST00000306842	NM_001005195.1	20	Ccg/Acg	0	
PTPRO	5800		GRCh37	12	15732990	15732990	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR414																					ENST00000281171.4:c.2938A>G	p.Arg980Gly	p.R980G	ENST00000281171	NM_030667.2	980	Aga/Gga	0	
LRRIQ1	84125		GRCh37	12	85547818	85547818	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR414																					ENST00000393217.2:c.4666C>A	p.Gln1556Lys	p.Q1556K	ENST00000393217	NM_001079910.1	1556	Caa/Aaa	0	
DNAH10	196385		GRCh37	12	124356088	124356088	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR414																					ENST00000409039.3:c.7370C>A	p.Ser2457Tyr	p.S2457Y	ENST00000409039	NM_207437.3	2457	tCt/tAt	0	
URAD	646625		GRCh37	13	28552386	28552386	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR414																					ENST00000332715.5:c.379G>A	p.Asp127Asn	p.D127N	ENST00000332715	NM_001105577.1	127	Gac/Aac	0	
FLT3	2322		GRCh37	13	28623662	28623662	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR414																					ENST00000241453.7:c.895G>A	p.Glu299Lys	p.E299K	ENST00000241453	NM_004119.2	299	Gag/Aag	0	
TNFSF13B	10673		GRCh37	13	108922544	108922544	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR414																					ENST00000375887.4:c.301G>A	p.Gly101Ser	p.G101S	ENST00000375887	NM_006573.4	101	Ggc/Agc	0	
CNOT1	23019		GRCh37	16	58576394	58576394	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR414																					ENST00000317147.5:c.4513T>A	p.Cys1505Ser	p.C1505S	ENST00000317147	NM_016284.4	1505	Tgt/Agt	0	
TP53	7157		GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR414																					ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc	0	
LAMA3	3909		GRCh37	18	21399860	21399860	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR414																					ENST00000313654.9:c.2203G>A	p.Asp735Asn	p.D735N	ENST00000313654	NM_198129.1	735	Gac/Aac	0	
LOXHD1	125336		GRCh37	18	44102154	44102154	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR414																					ENST00000300591.6:c.1662C>A	p.Asp554Glu	p.D554E	ENST00000300591	NM_001145472.2	554	gaC/gaA	0	
MUC16	94025		GRCh37	19	8998755	8998755	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR414																					ENST00000397910.4:c.40828A>T	p.Thr13610Ser	p.T13610S	ENST00000397910	NM_024690.2	13610	Acc/Tcc	0	
LRRC25	126364		GRCh37	19	18507577	18507577	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR414																					ENST00000339007.3:c.197T>G	p.Leu66Arg	p.L66R	ENST00000339007	NM_145256.2	66	cTt/cGt	0	
LMTK3	114783		GRCh37	19	49001804	49001804	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR414																					ENST00000600059.1:c.2522C>T	p.Pro841Leu	p.P841L	ENST00000600059		841	cCg/cTg	0	
DLGAP4	22839		GRCh37	20	35127660	35127660	+	intron_variant	Intron	SNP	A	A	T			brca_smc_2018_BR414																					ENST00000339266.5:c.2011-331A>T		p.*671*	ENST00000339266				0	
KLHL34	257240		GRCh37	X	21674156	21674156	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR414																					ENST00000379499.2:c.1751C>T	p.Ser584Leu	p.S584L	ENST00000379499	NM_153270.1	584	tCg/tTg	0	
FOXP3	50943		GRCh37	X	49111913	49111913	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR414																					ENST00000376207.4:c.793G>A	p.Ala265Thr	p.A265T	ENST00000376207	NM_014009.3	265	Gca/Aca	0	
CCNB3	85417		GRCh37	X	50052877	50052877	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR414																					ENST00000276014.7:c.1708T>A	p.Phe570Ile	p.F570I	ENST00000276014	NM_033031.2	570	Ttt/Att	0	
HUWE1	10075		GRCh37	X	53630453	53630453	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR414																					ENST00000262854.6:c.2752C>T	p.Arg918Cys	p.R918C	ENST00000262854	NM_031407.5	918	Cgt/Tgt	0	
MAGEE1	57692		GRCh37	X	75648880	75648880	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR414																					ENST00000361470.2:c.557C>G	p.Thr186Ser	p.T186S	ENST00000361470	NM_020932.2	186	aCc/aGc	0	
KLHL4	56062		GRCh37	X	86890742	86890742	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR414																					ENST00000373119.4:c.1892A>G	p.Asn631Ser	p.N631S	ENST00000373119	NM_019117.4	631	aAc/aGc	0	
GABRE	2564		GRCh37	X	151123891	151123891	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR414																					ENST00000370328.3:c.1086C>A	p.Asn362Lys	p.N362K	ENST00000370328	NM_004961.3	362	aaC/aaA	0	
SIPA1L2	57568		GRCh37	1	232607193	232607193	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR437																					ENST00000262861.4:c.2167A>T	p.Ser723Cys	p.S723C	ENST00000262861	NM_020808.3	723	Agc/Tgc	0	
ALMS1	7840		GRCh37	2	73675400	73675400	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR437																					ENST00000264448.6:c.1743C>G	p.Ser581Arg	p.S581R	ENST00000264448	NM_015120.4	581	agC/agG	0	
PNKD	25953		GRCh37	2	219136187	219136187	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR437																					ENST00000273077.4:c.151G>C	p.Glu51Gln	p.E51Q	ENST00000273077	NM_015488.4	51	Gag/Cag	0	
TMPRSS11D	9407		GRCh37	4	68725388	68725388	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR437																					ENST00000283916.6:c.17G>A	p.Arg6His	p.R6H	ENST00000283916	NM_004262.2	6	cGt/cAt	0	
ANKRD17	26057		GRCh37	4	74124136	74124136	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR437																					ENST00000358602.4:c.250A>G	p.Ser84Gly	p.S84G	ENST00000358602	NM_032217.3	84	Agc/Ggc	0	
ADCY2	108		GRCh37	5	7766811	7766811	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR437																					ENST00000338316.4:c.2106T>G	p.Ser702Arg	p.S702R	ENST00000338316	NM_020546.2	702	agT/agG	0	
MROH2B	133558		GRCh37	5	41007476	41007476	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR437																					ENST00000399564.4:c.3689A>C	p.Asn1230Thr	p.N1230T	ENST00000399564	NM_173489.4	1230	aAc/aCc	0	
FAT2	2196		GRCh37	5	150891814	150891814	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR437																					ENST00000261800.5:c.11817A>T	p.Gln3939His	p.Q3939H	ENST00000261800	NM_001447.2	3939	caA/caT	0	
GJA1	2697		GRCh37	6	121769136	121769136	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR437																					ENST00000282561.3:c.1143G>T	p.Glu381Asp	p.E381D	ENST00000282561	NM_000165.3	381	gaG/gaT	0	
SND1	27044		GRCh37	7	127729738	127729738	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR437																					ENST00000354725.3:c.2616G>T	p.Gln872His	p.Q872H	ENST00000354725	NM_014390.2	872	caG/caT	0	
KEL	3792		GRCh37	7	142641469	142641469	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR437																					ENST00000355265.2:c.1432G>C	p.Glu478Gln	p.E478Q	ENST00000355265	NM_000420.2	478	Gag/Cag	0	
KIF13B	23303		GRCh37	8	29024966	29024966	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BR437																					ENST00000524189.1:c.1082A>T	p.Glu361Val	p.E361V	ENST00000524189	NM_015254.3	361	gAg/gTg	0	
CSMD3	114788		GRCh37	8	113304930	113304930	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR437																					ENST00000297405.5:c.8624G>T	p.Cys2875Phe	p.C2875F	ENST00000297405	NM_198123.1	2875	tGt/tTt	0	
CSMD3	114788		GRCh37	8	113304931	113304931	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR437																					ENST00000297405.5:c.8623T>C	p.Cys2875Arg	p.C2875R	ENST00000297405	NM_198123.1	2875	Tgt/Cgt	0	
COL14A1	7373		GRCh37	8	121383402	121383402	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR437																					ENST00000297848.3:c.5323G>T	p.Asp1775Tyr	p.D1775Y	ENST00000297848	NM_021110.2	1775	Gat/Tat	0	
ZNF707	286075		GRCh37	8	144776587	144776587	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR437																					ENST00000358656.4:c.1003C>T	p.Arg335Trp	p.R335W	ENST00000358656	NM_001100598.1	335	Cgg/Tgg	0	
PLEC	5339		GRCh37	8	144995185	144995185	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR437																					ENST00000322810.4:c.9215C>T	p.Ala3072Val	p.A3072V	ENST00000322810	NM_201380.2	3072	gCa/gTa	0	
PAX5	5079		GRCh37	9	37020712	37020712	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR437																					ENST00000358127.4:c.133G>T	p.Ala45Ser	p.A45S	ENST00000358127	NM_001280556.1	45	Gct/Tct	0	
PCSK5	5125		GRCh37	9	78973651	78973651	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR437																					ENST00000545128.1:c.5396G>T	p.Ser1799Ile	p.S1799I	ENST00000545128	NM_001190482.1	1799	aGc/aTc	0	
KRT8P11	347265		GRCh37	9	102067649	102067649	+	non_coding_transcript_exon_variant	RNA	SNP	C	C	A			brca_smc_2018_BR437																					ENST00000539942.1:n.256C>A		p.*86*	ENST00000539942				0	
SRGN	5552		GRCh37	10	70856897	70856897	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR437																					ENST00000242465.3:c.137C>G	p.Ser46Cys	p.S46C	ENST00000242465	NM_002727.2	46	tCt/tGt	0	
SGPL1	8879		GRCh37	10	72630842	72630842	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR437																					ENST00000373202.3:c.848T>C	p.Leu283Pro	p.L283P	ENST00000373202	NM_003901.3	283	cTc/cCc	0	
KIF20B	9585		GRCh37	10	91498223	91498223	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR437																					ENST00000371728.3:c.3625C>A	p.Gln1209Lys	p.Q1209K	ENST00000371728	NM_001284259.1	1209	Cag/Aag	0	
BNIP3	664		GRCh37	10	133787406	133787406	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR437																					ENST00000368636.4:c.88G>A	p.Gly30Ser	p.G30S	ENST00000368636	NM_004052.2	30	Ggc/Agc	0	
INPPL1	3636		GRCh37	11	71944504	71944504	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR437																					ENST00000298229.2:c.2060C>T	p.Ser687Leu	p.S687L	ENST00000298229	NM_001567.3	687	tCa/tTa	0	
PHOX2A	401		GRCh37	11	71951089	71951089	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR437																					ENST00000298231.5:c.559G>C	p.Asp187His	p.D187H	ENST00000298231	NM_005169.3	187	Gat/Cat	0	
P4HA3	283208		GRCh37	11	73997380	73997380	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR437																					ENST00000331597.4:c.826G>C	p.Glu276Gln	p.E276Q	ENST00000331597	NM_182904.3	276	Gag/Cag	0	
SERPINH1	871		GRCh37	11	75283090	75283090	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR437																					ENST00000358171.3:c.1219G>T	p.Val407Phe	p.V407F	ENST00000358171	NM_001235.3	407	Gtc/Ttc	0	
PZP	5858		GRCh37	12	9356411	9356411	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR437																					ENST00000261336.2:c.220A>G	p.Thr74Ala	p.T74A	ENST00000261336	NM_002864.2	74	Act/Gct	0	
RARG	5916		GRCh37	12	53607964	53607964	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR437																					ENST00000425354.2:c.692G>T	p.Ser231Ile	p.S231I	ENST00000425354	NM_000966.5	231	aGt/aTt	0	
GPR133			GRCh37	12	131569147	131569147	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BR437																					ENST00000261654.5:c.1610C>G	p.Ser537Cys	p.S537C	ENST00000261654	NM_198827.3	537	tCc/tGc	0	
DOCK9	23348		GRCh37	13	99556906	99556906	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BR437																					ENST00000376460.1:c.1015T>G	p.Tyr339Asp	p.Y339D	ENST00000376460	NM_015296.2	339	Tat/Gat	0	
EFS	10278		GRCh37	14	23828942	23828942	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR437																					ENST00000216733.3:c.745G>A	p.Asp249Asn	p.D249N	ENST00000216733	NM_005864.3	249	Gat/Aat	0	
CLEC14A	161198		GRCh37	14	38724405	38724405	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BR437																					ENST00000342213.2:c.823A>G	p.Thr275Ala	p.T275A	ENST00000342213	NM_175060.2	275	Acg/Gcg	0	
FLRT2	23768		GRCh37	14	86088638	86088638	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR437																					ENST00000330753.4:c.780G>T	p.Gln260His	p.Q260H	ENST00000330753	NM_013231.4	260	caG/caT	0	
DUOXA1	90527		GRCh37	15	45415118	45415118	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BR437																					ENST00000560572.1:c.95T>A	p.Leu32Gln	p.L32Q	ENST00000560572	NM_001276266.1	32	cTg/cAg	0	
SLC24A5	283652		GRCh37	15	48434513	48434513	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BR437																					ENST00000341459.3:c.1468A>G	p.Ile490Val	p.I490V	ENST00000341459	NM_205850.2	490	Att/Gtt	0	
SKOR1	390598		GRCh37	15	68120402	68120402	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR437																					ENST00000380035.2:c.2236G>C	p.Glu746Gln	p.E746Q	ENST00000380035		746	Gag/Cag	0	
AC112693.2			GRCh37	15	93749663	93749663	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR437																					ENST00000599897.1:c.241C>A	p.Pro81Thr	p.P81T	ENST00000599897		81	Ccc/Acc	0	
ITGAL	3683		GRCh37	16	30516595	30516595	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR437																					ENST00000356798.6:c.2266C>T	p.Pro756Ser	p.P756S	ENST00000356798	NM_002209.2	756	Ccc/Tcc	0	
TLCD2	727910		GRCh37	17	1613167	1613167	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR437																					ENST00000330676.6:c.190C>A	p.Pro64Thr	p.P64T	ENST00000330676	NM_001164407.1	64	Cct/Act	0	
GRIN2C	2905		GRCh37	17	72843607	72843607	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR437																					ENST00000293190.5:c.1841C>T	p.Ser614Leu	p.S614L	ENST00000293190	NM_000835.4	614	tCa/tTa	0	
AP3D1	8943		GRCh37	19	2111717	2111717	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR437																					ENST00000345016.5:c.2712G>T	p.Glu904Asp	p.E904D	ENST00000345016	NM_003938.6	904	gaG/gaT	0	
GAPDHS	26330		GRCh37	19	36029241	36029241	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BR437																					ENST00000222286.4:c.278C>A	p.Ala93Asp	p.A93D	ENST00000222286	NM_014364.4	93	gCc/gAc	0	
CYP2B6	1555		GRCh37	19	41518678	41518678	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR437																					ENST00000324071.4:c.1252G>T	p.Gly418Trp	p.G418W	ENST00000324071	NM_000767.4	418	Ggg/Tgg	0	
NLRP11	204801		GRCh37	19	56320705	56320705	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BR437																					ENST00000589093.1:c.1271A>C	p.Glu424Ala	p.E424A	ENST00000589093		424	gAg/gCg	0	
GFRA4	64096		GRCh37	20	3641852	3641852	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BR437																					ENST00000319242.3:c.131C>G	p.Ser44Cys	p.S44C	ENST00000319242		44	tCc/tGc	0	
ETS2	2114		GRCh37	21	40191564	40191564	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BR437																					ENST00000360214.3:c.949G>A	p.Asp317Asn	p.D317N	ENST00000360214	NM_001256295.1	317	Gac/Aac	0	
TFF3	7033		GRCh37	21	43733738	43733738	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BR437																					ENST00000518498.1:c.128C>A	p.Ala43Glu	p.A43E	ENST00000518498		43	gCa/gAa	0	
TFF3	7033		GRCh37	21	43733739	43733739	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR437																					ENST00000518498.1:c.127G>A	p.Ala43Thr	p.A43T	ENST00000518498		43	Gca/Aca	0	
F8	2157		GRCh37	X	154159156	154159156	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BR437																					ENST00000360256.4:c.2909G>A	p.Gly970Asp	p.G970D	ENST00000360256	NM_000132.3	970	gGt/gAt	0	
C1orf222			GRCh37	1	1855219	1855219	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000493964.1:c.2233G>C	p.Glu745Gln	p.E745Q	ENST00000493964		745	Gaa/Caa	0	
PINK1	65018		GRCh37	1	20970982	20970982	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000321556.4:c.777-1G>C		p.X259_splice	ENST00000321556	NM_032409.2	259		0	
SRRM1	10250		GRCh37	1	24989284	24989284	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000323848.9:c.1617G>C	p.Glu539Asp	p.E539D	ENST00000323848	NM_005839.3	539	gaG/gaC	0	
CEP85	64793		GRCh37	1	26586189	26586189	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000252992.4:c.1237G>C	p.Glu413Gln	p.E413Q	ENST00000252992	NM_022778.3	413	Gaa/Caa	0	
SYNC	81493		GRCh37	1	33160473	33160473	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_111																					ENST00000409190.3:c.1226A>T	p.Gln409Leu	p.Q409L	ENST00000409190	NM_030786.2	409	cAg/cTg	0	
SFPQ	6421		GRCh37	1	35656148	35656148	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000357214.5:c.1366G>A	p.Glu456Lys	p.E456K	ENST00000357214	NM_005066.2	456	Gaa/Aaa	0	
PPCS	79717		GRCh37	1	42922574	42922574	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000372561.3:c.338C>T	p.Ser113Leu	p.S113L	ENST00000372561	NM_024664.2	113	tCg/tTg	0	
TIE1	7075		GRCh37	1	43778074	43778074	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000372476.3:c.1729G>A	p.Gly577Ser	p.G577S	ENST00000372476	NM_005424.4	577	Ggc/Agc	0	
NRD1			GRCh37	1	52306125	52306125	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000354831.7:c.403G>C	p.Gly135Arg	p.G135R	ENST00000354831	NM_002525.2	135	Ggt/Cgt	0	
FAM159A			GRCh37	1	53099295	53099295	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000517870.1:c.130G>A	p.Asp44Asn	p.D44N	ENST00000517870	NM_001042693.1	44	Gac/Aac	0	
PGM1	5236		GRCh37	1	64095628	64095628	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000371084.3:c.425C>T	p.Ala142Val	p.A142V	ENST00000371084	NM_002633.2	142	gCa/gTa	0	
LEPR	3953		GRCh37	1	66102096	66102096	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000349533.6:c.2896G>C	p.Glu966Gln	p.E966Q	ENST00000349533	NM_002303.5	966	Gag/Cag	0	
CCDC18	343099		GRCh37	1	93672902	93672902	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000343253.7:c.1156G>A	p.Glu386Lys	p.E386K	ENST00000343253		386	Gaa/Aaa	0	
SETDB1	9869		GRCh37	1	150915112	150915112	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000271640.5:c.621G>C	p.Lys207Asn	p.K207N	ENST00000271640	NM_001145415.1	207	aaG/aaC	0	
IVL	3713		GRCh37	1	152882654	152882654	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000368764.3:c.381G>C	p.Lys127Asn	p.K127N	ENST00000368764		127	aaG/aaC	0	
OR10J1	26476		GRCh37	1	159409565	159409565	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000423932.3:c.17G>C	p.Arg6Thr	p.R6T	ENST00000423932	NM_012351.2	6	aGa/aCa	0	
PRDX6	9588		GRCh37	1	173454617	173454617	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000340385.5:c.370G>A	p.Glu124Lys	p.E124K	ENST00000340385	NM_004905.2	124	Gaa/Aaa	0	
RFWD2			GRCh37	1	175957472	175957472	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000367669.3:c.1924G>C	p.Glu642Gln	p.E642Q	ENST00000367669	NM_022457.5	642	Gaa/Caa	0	
IGFN1	91156		GRCh37	1	201182596	201182596	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000295591.8:c.55G>A	p.Glu19Lys	p.E19K	ENST00000295591		19	Gaa/Aaa	0	
DIEXF			GRCh37	1	210015963	210015963	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000491415.2:c.1704C>G	p.Ile568Met	p.I568M	ENST00000491415	NM_014388.6	568	atC/atG	0	
USH2A	7399		GRCh37	1	216373324	216373324	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000307340.3:c.3456G>C	p.Leu1152Phe	p.L1152F	ENST00000307340	NM_206933.2	1152	ttG/ttC	0	
MIA3	375056		GRCh37	1	222837404	222837404	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000344922.5:c.5327G>A	p.Gly1776Glu	p.G1776E	ENST00000344922	NM_198551.2	1776	gGa/gAa	0	
CHML	1122		GRCh37	1	241797563	241797563	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000366553.1:c.1506G>A	p.Met502Ile	p.M502I	ENST00000366553	NM_001821.3	502	atG/atA	0	
ZBTB18	10472		GRCh37	1	244217353	244217353	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_111																					ENST00000358704.4:c.277G>T	p.Glu93Ter	p.E93*	ENST00000358704	NM_205768.2	93	Gaa/Taa	0	
CNST	163882		GRCh37	1	246811007	246811007	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000366513.4:c.1504G>A	p.Asp502Asn	p.D502N	ENST00000366513	NM_152609.2	502	Gac/Aac	0	
PGBD2	267002		GRCh37	1	249212152	249212152	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000329291.5:c.1369C>T	p.Gln457Ter	p.Q457*	ENST00000329291	NM_170725.2	457	Cag/Tag	0	
SH3YL1	26751		GRCh37	2	231035	231035	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000356150.5:c.690G>C	p.Gln230His	p.Q230H	ENST00000356150	NM_015677.2	230	caG/caC	0	
ASAP2	8853		GRCh37	2	9531206	9531206	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000281419.3:c.2399C>T	p.Ser800Phe	p.S800F	ENST00000281419	NM_003887.2	800	tCt/tTt	0	
ASXL2	55252		GRCh37	2	25982359	25982359	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000435504.4:c.931G>C	p.Asp311His	p.D311H	ENST00000435504		311	Gat/Cat	0	
KHK	3795		GRCh37	2	27320386	27320386	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000260598.5:c.433G>C	p.Glu145Gln	p.E145Q	ENST00000260598	NM_006488.2	145	Gag/Cag	0	
TRMT61B	55006		GRCh37	2	29073992	29073992	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000306108.5:c.1258G>C	p.Asp420His	p.D420H	ENST00000306108	NM_017910.3	420	Gat/Cat	0	
RASGRP3	25780		GRCh37	2	33749545	33749545	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000402538.3:c.737G>A	p.Gly246Glu	p.G246E	ENST00000402538	NM_170672.2	246	gGa/gAa	0	
OXER1	165140		GRCh37	2	42991246	42991246	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000378661.2:c.74G>C	p.Arg25Thr	p.R25T	ENST00000378661	NM_148962.4	25	aGa/aCa	0	
FBXO11	80204		GRCh37	2	48060177	48060177	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000403359.3:c.967G>A	p.Glu323Lys	p.E323K	ENST00000403359	NM_001190274.1	323	Gaa/Aaa	0	
CCT7	10574		GRCh37	2	73467624	73467624	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000258091.5:c.220C>G	p.Pro74Ala	p.P74A	ENST00000258091	NM_006429.3	74	Cct/Gct	0	
C2orf81	388963		GRCh37	2	74642621	74642621	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000290390.5:c.602C>G	p.Ser201Ter	p.S201*	ENST00000290390	NM_001145054.1	201	tCa/tGa	0	
DNAH6	1768		GRCh37	2	84848378	84848378	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000237449.6:c.3856G>A	p.Glu1286Lys	p.E1286K	ENST00000237449		1286	Gaa/Aaa	0	
GPAT2	150763		GRCh37	2	96690055	96690055	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000359548.4:c.1700G>A	p.Arg567Lys	p.R567K	ENST00000359548	NM_207328.2	567	aGa/aAa	0	
PDCL3	79031		GRCh37	2	101183086	101183086	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000264254.6:c.128C>G	p.Ser43Ter	p.S43*	ENST00000264254	NM_024065.4	43	tCa/tGa	0	
MGAT5	4249		GRCh37	2	135099312	135099312	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_111																					ENST00000281923.2:c.959C>A	p.Ser320Ter	p.S320*	ENST00000281923	NM_002410.4	320	tCa/tAa	0	
ZRANB3	84083		GRCh37	2	135975075	135975075	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000264159.6:c.2455G>C	p.Glu819Gln	p.E819Q	ENST00000264159	NM_032143.2	819	Gag/Cag	0	
TANK	10010		GRCh37	2	162060103	162060103	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_111																					ENST00000259075.2:c.205C>A	p.Gln69Lys	p.Q69K	ENST00000259075	NM_004180.2	69	Caa/Aaa	0	
NOSTRIN	115677		GRCh37	2	169707804	169707804	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000317647.7:c.745C>T	p.His249Tyr	p.H249Y	ENST00000317647	NM_001039724.3	249	Cac/Tac	0	
HAT1	8520		GRCh37	2	172822401	172822401	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000264108.4:c.583G>C	p.Asp195His	p.D195H	ENST00000264108	NM_003642.3	195	Gat/Cat	0	
TTN	7273		GRCh37	2	179402613	179402613	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000591111.1:c.94398G>A	p.Met31466Ile	p.M31466I	ENST00000591111		31466	atG/atA	0	
TTN	7273		GRCh37	2	179438120	179438120	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000591111.1:c.67816G>C	p.Asp22606His	p.D22606H	ENST00000591111		22606	Gat/Cat	0	
TTN	7273		GRCh37	2	179441830	179441830	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000591111.1:c.64309G>A	p.Glu21437Lys	p.E21437K	ENST00000591111		21437	Gaa/Aaa	0	
TTN	7273		GRCh37	2	179485314	179485314	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000591111.1:c.41011G>A	p.Glu13671Lys	p.E13671K	ENST00000591111		13671	Gaa/Aaa	0	
HECW2	57520		GRCh37	2	197090539	197090539	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000260983.3:c.3973G>C	p.Asp1325His	p.D1325H	ENST00000260983	NM_020760.1	1325	Gat/Cat	0	
GTF3C3	9330		GRCh37	2	197637749	197637749	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000263956.3:c.1960G>A	p.Glu654Lys	p.E654K	ENST00000263956	NM_012086.4	654	Gaa/Aaa	0	
SPATS2L	26010		GRCh37	2	201284196	201284196	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000358677.5:c.422C>T	p.Ser141Leu	p.S141L	ENST00000358677	NM_015535.2	141	tCa/tTa	0	
GPBAR1	151306		GRCh37	2	219127678	219127678	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000479077.1:c.231G>C	p.Gln77His	p.Q77H	ENST00000479077		77	caG/caC	0	
WNT10A	80326		GRCh37	2	219757703	219757703	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000258411.3:c.964C>G	p.Pro322Ala	p.P322A	ENST00000258411	NM_025216.2	322	Ccg/Gcg	0	
SRGAP3	9901		GRCh37	3	9052013	9052013	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_111																					ENST00000383836.3:c.2206G>T	p.Glu736Ter	p.E736*	ENST00000383836	NM_014850.3	736	Gag/Tag	0	
TOP2B	7155		GRCh37	3	25670595	25670595	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_111																					ENST00000264331.4:c.1731C>A	p.Phe577Leu	p.F577L	ENST00000264331		577	ttC/ttA	0	
ZNF660	285349		GRCh37	3	44636398	44636398	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000322734.2:c.713G>A	p.Arg238Lys	p.R238K	ENST00000322734	NM_173658.2	238	aGa/aAa	0	
LINC00696	100128378		GRCh37	3	52097126	52097126	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000541313.1:c.442C>G	p.Gln148Glu	p.Q148E	ENST00000541313		148	Cag/Gag	0	
LINC00696	100128378		GRCh37	3	52097485	52097485	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000541313.1:c.83C>G	p.Ser28Cys	p.S28C	ENST00000541313		28	tCt/tGt	0	
SFMBT1	51460		GRCh37	3	52941746	52941746	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_111																					ENST00000394752.3:c.1910A>C	p.His637Pro	p.H637P	ENST00000394752	NM_016329.3	637	cAc/cCc	0	
DNAH12	201625		GRCh37	3	57391655	57391655	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000351747.2:c.6244C>G	p.Leu2082Val	p.L2082V	ENST00000351747	NM_178504.4	2082	Ctt/Gtt	0	
STX19	415117		GRCh37	3	93733415	93733415	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_111																					ENST00000315099.2:c.699C>A	p.Phe233Leu	p.F233L	ENST00000315099	NM_001001850.2	233	ttC/ttA	0	
GPR15	2838		GRCh37	3	98251628	98251628	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000284311.3:c.751C>T	p.Leu251Phe	p.L251F	ENST00000284311	NM_005290.2	251	Ctt/Ttt	0	
CEP97	79598		GRCh37	3	101484257	101484257	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000341893.3:c.2460G>C	p.Glu820Asp	p.E820D	ENST00000341893		820	gaG/gaC	0	
KIAA2018			GRCh37	3	113374836	113374836	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000316407.4:c.5693C>G	p.Ser1898Ter	p.S1898*	ENST00000316407	NM_001009899.2	1898	tCa/tGa	0	
GOLGB1	2804		GRCh37	3	121412978	121412978	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000340645.5:c.6377G>C	p.Arg2126Thr	p.R2126T	ENST00000340645	NM_001256487.1	2126	aGa/aCa	0	
OSBPL11	114885		GRCh37	3	125295037	125295037	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000296220.5:c.662G>C	p.Arg221Thr	p.R221T	ENST00000296220	NM_022776.4	221	aGa/aCa	0	
HMCES	56941		GRCh37	3	128998753	128998753	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000383463.4:c.178G>C	p.Glu60Gln	p.E60Q	ENST00000383463	NM_020187.2	60	Gag/Cag	0	
COL6A5	256076		GRCh37	3	130095273	130095273	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000312481.7:c.261C>G	p.Phe87Leu	p.F87L	ENST00000312481		87	ttC/ttG	0	
NEK11	79858		GRCh37	3	130889650	130889650	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000383366.4:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000383366	NM_024800.4	440	Gag/Aag	0	
PPP2R3A	5523		GRCh37	3	135745896	135745896	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000264977.3:c.2218G>A	p.Glu740Lys	p.E740K	ENST00000264977	NM_001190447.1	740	Gaa/Aaa	0	
CLSTN2	64084		GRCh37	3	140123455	140123455	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000458420.3:c.484G>C	p.Glu162Gln	p.E162Q	ENST00000458420	NM_022131.2	162	Gag/Cag	0	
XRN1	54464		GRCh37	3	142103416	142103416	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000264951.4:c.2451G>C	p.Glu817Asp	p.E817D	ENST00000264951	NM_019001.3	817	gaG/gaC	0	
CCNL1	57018		GRCh37	3	156866245	156866245	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000295926.3:c.1366G>A	p.Asp456Asn	p.D456N	ENST00000295926	NM_020307.2	456	Gat/Aat	0	
PIK3CA	5290		GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag	0	
PIK3CA	5290		GRCh37	3	178948136	178948136	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000263967.3:c.2908G>A	p.Glu970Lys	p.E970K	ENST00000263967	NM_006218.2	970	Gaa/Aaa	0	
USP13	8975		GRCh37	3	179483482	179483482	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000263966.3:c.2260-1G>C		p.X754_splice	ENST00000263966	NM_003940.2	754		0	
SLC26A1	10861		GRCh37	4	985405	985405	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000361661.2:c.87G>C	p.Glu29Asp	p.E29D	ENST00000361661	NM_213613.3	29	gaG/gaC	0	
NOP14	8602		GRCh37	4	2956180	2956180	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000314262.6:c.583G>C	p.Glu195Gln	p.E195Q	ENST00000314262	NM_003703.1	195	Gag/Cag	0	
TBC1D14	57533		GRCh37	4	6925740	6925740	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000409757.4:c.624C>G	p.Ile208Met	p.I208M	ENST00000409757	NM_020773.2	208	atC/atG	0	
CPEB2	132864		GRCh37	4	15067936	15067936	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000507071.1:c.1702G>A	p.Glu568Lys	p.E568K	ENST00000507071		568	Gag/Aag	0	
LGI2	55203		GRCh37	4	25020793	25020793	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000382114.4:c.481G>C	p.Glu161Gln	p.E161Q	ENST00000382114	NM_018176.3	161	Gaa/Caa	0	
N4BP2	55728		GRCh37	4	40122085	40122085	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000261435.6:c.2354C>G	p.Ser785Ter	p.S785*	ENST00000261435	NM_018177.4	785	tCa/tGa	0	
N4BP2	55728		GRCh37	4	40122198	40122198	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000261435.6:c.2467C>G	p.Gln823Glu	p.Q823E	ENST00000261435	NM_018177.4	823	Cag/Gag	0	
NFXL1	152518		GRCh37	4	47850335	47850335	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000507489.1:c.2581G>C	p.Glu861Gln	p.E861Q	ENST00000507489	NM_001278624.1	861	Gaa/Caa	0	
POLR2B	5431		GRCh37	4	57856916	57856916	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000314595.5:c.95C>T	p.Ser32Phe	p.S32F	ENST00000314595	NM_000938.1	32	tCc/tTc	0	
RCHY1	25898		GRCh37	4	76416822	76416822	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000324439.5:c.535G>C	p.Glu179Gln	p.E179Q	ENST00000324439		179	Gaa/Caa	0	
FRAS1	80144		GRCh37	4	79432622	79432622	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000264895.6:c.9975G>C	p.Leu3325Phe	p.L3325F	ENST00000264895	NM_025074.6	3325	ttG/ttC	0	
SEC31A	22872		GRCh37	4	83795846	83795846	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000355196.2:c.557C>G	p.Ser186Ter	p.S186*	ENST00000355196		186	tCa/tGa	0	
ETNPPL	64850		GRCh37	4	109667570	109667570	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000296486.3:c.1288G>C	p.Asp430His	p.D430H	ENST00000296486	NM_031279.3	430	Gat/Cat	0	
LRIT3	345193		GRCh37	4	110791115	110791115	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000594814.1:c.1210C>G	p.Pro404Ala	p.P404A	ENST00000594814	NM_198506.4	404	Cct/Gct	0	
BBS12	166379		GRCh37	4	123663932	123663932	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000314218.3:c.885G>C	p.Gln295His	p.Q295H	ENST00000314218	NM_152618.2	295	caG/caC	0	
RPS3A	6189		GRCh37	4	152024138	152024138	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_111																					ENST00000274065.4:c.470A>C	p.Gln157Pro	p.Q157P	ENST00000274065	NM_001006.4	157	cAg/cCg	0	
FBXW7	55294		GRCh37	4	153332882	153332882	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000281708.4:c.74C>G	p.Ser25Ter	p.S25*	ENST00000281708	NM_033632.3	25	tCa/tGa	0	
ANKRD37	353322		GRCh37	4	186318102	186318102	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000335174.4:c.25G>C	p.Glu9Gln	p.E9Q	ENST00000335174	NM_181726.2	9	Gag/Cag	0	
MTRR	4552		GRCh37	5	7878251	7878251	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000264668.2:c.677C>T	p.Ser226Leu	p.S226L	ENST00000264668	NM_024010.2	226	tCa/tTa	0	
FAM173B			GRCh37	5	10239216	10239216	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000511437.1:c.269G>C	p.Gly90Ala	p.G90A	ENST00000511437	NM_199133.3	90	gGa/gCa	0	
PDZD2	23037		GRCh37	5	32089548	32089548	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000438447.1:c.5994G>A	p.Trp1998Ter	p.W1998*	ENST00000438447		1998	tgG/tgA	0	
PDZD2	23037		GRCh37	5	32098522	32098522	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000438447.1:c.8000G>A	p.Arg2667Gln	p.R2667Q	ENST00000438447		2667	cGa/cAa	0	
ITGA2	3673		GRCh37	5	52344254	52344254	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_111																					ENST00000296585.5:c.449C>A	p.Ser150Tyr	p.S150Y	ENST00000296585	NM_002203.3	150	tCt/tAt	0	
MAP3K1	4214		GRCh37	5	56177896	56177896	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000399503.3:c.2869C>G	p.Gln957Glu	p.Q957E	ENST00000399503	NM_005921.1	957	Caa/Gaa	0	
ZSWIM6	57688		GRCh37	5	60628703	60628703	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000252744.5:c.604G>C	p.Glu202Gln	p.E202Q	ENST00000252744	NM_020928.1	202	Gag/Cag	0	
MAST4	375449		GRCh37	5	66426089	66426089	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_111																					ENST00000403625.2:c.1797G>T	p.Lys599Asn	p.K599N	ENST00000403625	NM_001164664.1	599	aaG/aaT	0	
MAP1B	4131		GRCh37	5	71482576	71482576	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000296755.7:c.505C>G	p.Gln169Glu	p.Q169E	ENST00000296755	NM_005909.3	169	Caa/Gaa	0	
PAPD4			GRCh37	5	78975454	78975454	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000296783.3:c.1261G>A	p.Asp421Asn	p.D421N	ENST00000296783		421	Gat/Aat	0	
YTHDC2	64848		GRCh37	5	112868723	112868723	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000161863.4:c.823C>G	p.Gln275Glu	p.Q275E	ENST00000161863	NM_022828.3	275	Cag/Gag	0	
LECT2	3950		GRCh37	5	135286982	135286982	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000274507.1:c.219G>C	p.Met73Ile	p.M73I	ENST00000274507	NM_002302.2	73	atG/atC	0	
PAIP2	51247		GRCh37	5	138700277	138700277	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000265192.4:c.163G>C	p.Glu55Gln	p.E55Q	ENST00000265192	NM_016480.3	55	Gaa/Caa	0	
ANKHD1	54882		GRCh37	5	139905866	139905866	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000360839.2:c.4778C>G	p.Ser1593Ter	p.S1593*	ENST00000360839	NM_017747.2	1593	tCa/tGa	0	
PCDHB16	57717		GRCh37	5	140562159	140562159	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000361016.2:c.25C>T	p.Arg9Trp	p.R9W	ENST00000361016	NM_020957.1	9	Cgg/Tgg	0	
PCDHB11	56125		GRCh37	5	140579705	140579705	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000354757.3:c.358G>C	p.Glu120Gln	p.E120Q	ENST00000354757	NM_018931.2	120	Gag/Cag	0	
PCDHGA11	56105		GRCh37	5	140801036	140801036	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000398587.2:c.242G>A	p.Arg81Gln	p.R81Q	ENST00000398587	NM_032092.1	81	cGa/cAa	0	
RNF14	9604		GRCh37	5	141353294	141353294	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000347642.3:c.141G>C	p.Lys47Asn	p.K47N	ENST00000347642	NM_183400.2	47	aaG/aaC	0	
CNOT8	9337		GRCh37	5	154244804	154244804	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000285896.6:c.170C>G	p.Ser57Cys	p.S57C	ENST00000285896		57	tCc/tGc	0	
TENM2	57451		GRCh37	5	167643789	167643789	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000518659.1:c.4095G>C	p.Lys1365Asn	p.K1365N	ENST00000518659	NM_001122679.1	1365	aaG/aaC	0	
CDHR2	54825		GRCh37	5	176018235	176018235	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000261944.5:c.3564G>C	p.Met1188Ile	p.M1188I	ENST00000261944	NM_017675.4	1188	atG/atC	0	
DDX41	51428		GRCh37	5	176943928	176943928	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000507955.1:c.19G>C	p.Glu7Gln	p.E7Q	ENST00000507955	NM_016222.2	7	Gaa/Caa	0	
MAML1	9794		GRCh37	5	179192487	179192487	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000292599.3:c.476C>T	p.Ser159Phe	p.S159F	ENST00000292599	NM_014757.4	159	tCc/tTc	0	
FOXC1	2296		GRCh37	6	1612242	1612242	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000380874.2:c.1562C>G	p.Ser521Cys	p.S521C	ENST00000380874	NM_001453.2	521	tCt/tGt	0	
CAP2	10486		GRCh37	6	17543355	17543355	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000229922.2:c.1190C>G	p.Ser397Cys	p.S397C	ENST00000229922	NM_006366.2	397	tCc/tGc	0	
ATF6B	1388		GRCh37	6	32085793	32085793	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000375203.3:c.1267C>T	p.Pro423Ser	p.P423S	ENST00000375203	NM_001136153.1	423	Ccc/Tcc	0	
PI16	221476		GRCh37	6	36922624	36922624	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000373674.3:c.88G>C	p.Asp30His	p.D30H	ENST00000373674	NM_153370.2	30	Gat/Cat	0	
PPP2R5D	5528		GRCh37	6	42975186	42975186	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000485511.1:c.668C>G	p.Ser223Cys	p.S223C	ENST00000485511	NM_001270476.1	223	tCt/tGt	0	
GPR111			GRCh37	6	47646781	47646781	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000296862.1:c.382C>T	p.Gln128Ter	p.Q128*	ENST00000296862		128	Cag/Tag	0	
C6orf141	135398		GRCh37	6	49518629	49518629	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000371194.3:c.124C>G	p.Leu42Val	p.L42V	ENST00000371194		42	Cta/Gta	0	
C6orf141	135398		GRCh37	6	49518791	49518791	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000371194.3:c.286G>C	p.Glu96Gln	p.E96Q	ENST00000371194		96	Gag/Cag	0	
CRISP3	10321		GRCh37	6	49701487	49701487	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000433368.2:c.421G>A	p.Asp141Asn	p.D141N	ENST00000433368	NM_001190986.1	141	Gat/Aat	0	
DOPEY1			GRCh37	6	83847822	83847822	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000349129.2:c.4061C>G	p.Ser1354Cys	p.S1354C	ENST00000349129	NM_015018.3	1354	tCt/tGt	0	
MARCKS	4082		GRCh37	6	114181309	114181309	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000368635.4:c.553G>A	p.Glu185Lys	p.E185K	ENST00000368635	NM_002356.5	185	Gag/Aag	0	
SAMD3	154075		GRCh37	6	130476148	130476148	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000368134.2:c.845C>G	p.Ser282Cys	p.S282C	ENST00000368134	NM_001258275.1	282	tCt/tGt	0	
KIAA1244			GRCh37	6	138649251	138649251	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000251691.4:c.5095G>A	p.Glu1699Lys	p.E1699K	ENST00000251691	NM_020340.4	1699	Gaa/Aaa	0	
LTV1	84946		GRCh37	6	144171293	144171293	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000367576.5:c.335C>T	p.Ser112Leu	p.S112L	ENST00000367576	NM_032860.3	112	tCa/tTa	0	
SASH1	23328		GRCh37	6	148867274	148867274	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000367467.3:c.3472C>T	p.Arg1158Cys	p.R1158C	ENST00000367467	NM_015278.3	1158	Cgc/Tgc	0	
SYNE1	23345		GRCh37	6	152470791	152470791	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_111																					ENST00000367255.5:c.24463G>T	p.Glu8155Ter	p.E8155*	ENST00000367255	NM_182961.3	8155	Gaa/Taa	0	
SYNE1	23345		GRCh37	6	152716682	152716682	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000367255.5:c.7681G>A	p.Glu2561Lys	p.E2561K	ENST00000367255	NM_182961.3	2561	Gaa/Aaa	0	
THBS2	7058		GRCh37	6	169622467	169622467	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000366787.3:c.3098C>G	p.Ser1033Ter	p.S1033*	ENST00000366787	NM_003247.2	1033	tCa/tGa	0	
CHST12	55501		GRCh37	7	2473052	2473052	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000258711.6:c.778G>A	p.Glu260Lys	p.E260K	ENST00000258711	NM_001243794.1	260	Gag/Aag	0	
GRID2IP	392862		GRCh37	7	6537707	6537707	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000457091.2:c.3552G>C	p.Met1184Ile	p.M1184I	ENST00000457091	NM_001145118.1	1184	atG/atC	0	
LRRC72	100506049		GRCh37	7	16620948	16620948	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			brca_smc_2018_BB01_111																					ENST00000401542.2:c.699-1G>T		p.X233_splice	ENST00000401542	NM_001195280.1	233		0	
DNAH11	8701		GRCh37	7	21583088	21583088	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000409508.3:c.225G>C	p.Glu75Asp	p.E75D	ENST00000409508	NM_001277115.1	75	gaG/gaC	0	
VPS41	27072		GRCh37	7	38835186	38835186	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000310301.4:c.596C>G	p.Ser199Ter	p.S199*	ENST00000310301	NM_014396.3	199	tCa/tGa	0	
ZNF138	7697		GRCh37	7	64275326	64275326	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000440155.2:c.34G>C	p.Glu12Gln	p.E12Q	ENST00000440155	NM_006524.3	12	Gag/Cag	0	
SAMD9L	219285		GRCh37	7	92760853	92760853	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000318238.4:c.4432C>G	p.Leu1478Val	p.L1478V	ENST00000318238	NM_152703.2	1478	Ctg/Gtg	0	
CCDC132			GRCh37	7	92978045	92978045	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000305866.5:c.2230G>A	p.Glu744Lys	p.E744K	ENST00000305866	NM_017667.3	744	Gag/Aag	0	
DLX6	1750		GRCh37	7	96636973	96636973	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000518156.2:c.460G>A	p.Glu154Lys	p.E154K	ENST00000518156		154	Gaa/Aaa	0	
CYP3A7	1551		GRCh37	7	99313386	99313386	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000336374.2:c.665C>T	p.Ser222Leu	p.S222L	ENST00000336374	NM_000765.3	222	tCa/tTa	0	
PTPRZ1	5803		GRCh37	7	121653742	121653742	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000393386.2:c.4642G>A	p.Glu1548Lys	p.E1548K	ENST00000393386	NM_001206838.1	1548	Gaa/Aaa	0	
ZNF800	168850		GRCh37	7	127014665	127014665	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000265827.3:c.725G>C	p.Arg242Thr	p.R242T	ENST00000265827	NM_176814.3	242	aGa/aCa	0	
CPA4	51200		GRCh37	7	129948190	129948190	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000222482.4:c.746C>G	p.Ser249Cys	p.S249C	ENST00000222482	NM_016352.3	249	tCc/tGc	0	
GALNT11	63917		GRCh37	7	151810371	151810371	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000430044.2:c.1121C>G	p.Ser374Cys	p.S374C	ENST00000430044	NM_022087.2	374	tCt/tGt	0	
RP1L1	94137		GRCh37	8	10480432	10480432	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000382483.3:c.280G>C	p.Glu94Gln	p.E94Q	ENST00000382483	NM_178857.5	94	Gag/Cag	0	
FGFR1	2260		GRCh37	8	38275882	38275882	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000447712.2:c.1294G>A	p.Asp432Asn	p.D432N	ENST00000447712	NM_001174063.1	432	Gac/Aac	0	
PRKDC	5591		GRCh37	8	48866435	48866435	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000314191.2:c.553C>T	p.His185Tyr	p.H185Y	ENST00000314191	NM_006904.6	185	Cat/Tat	0	
GEM	2669		GRCh37	8	95262699	95262699	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000297596.2:c.730G>A	p.Asp244Asn	p.D244N	ENST00000297596	NM_005261.3	244	Gac/Aac	0	
CSMD3	114788		GRCh37	8	114449016	114449016	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000297405.5:c.68G>C	p.Arg23Thr	p.R23T	ENST00000297405	NM_198123.1	23	aGa/aCa	0	
MTSS1	9788		GRCh37	8	125565751	125565751	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000518547.1:c.1750C>G	p.Pro584Ala	p.P584A	ENST00000518547	NM_014751.4	584	Cca/Gca	0	
FAM135B	51059		GRCh37	8	139144910	139144910	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000395297.1:c.4147C>T	p.His1383Tyr	p.H1383Y	ENST00000395297	NM_015912.3	1383	Cac/Tac	0	
BAI1			GRCh37	8	143614764	143614764	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_111																					ENST00000323289.5:c.3507C>A	p.Phe1169Leu	p.F1169L	ENST00000323289	NM_001702.2	1169	ttC/ttA	0	
ARC	23237		GRCh37	8	143695251	143695251	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000356613.2:c.382G>C	p.Asp128His	p.D128H	ENST00000356613	NM_015193.4	128	Gac/Cac	0	
NAPRT1			GRCh37	8	144657426	144657426	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_111																					ENST00000449291.2:c.1381G>T	p.Glu461Ter	p.E461*	ENST00000449291		461	Gag/Tag	0	
FAM83H	286077		GRCh37	8	144810529	144810529	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000388913.3:c.1102G>C	p.Glu368Gln	p.E368Q	ENST00000388913	NM_198488.3	368	Gaa/Caa	0	
SMARCA2	6595		GRCh37	9	2033069	2033069	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000349721.2:c.343C>G	p.Gln115Glu	p.Q115E	ENST00000349721	NM_003070.3	115	Caa/Gaa	0	
MELK	9833		GRCh37	9	36589608	36589608	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000298048.2:c.220C>T	p.His74Tyr	p.H74Y	ENST00000298048	NM_014791.3	74	Cat/Tat	0	
TRPM3	80036		GRCh37	9	73254038	73254038	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000377110.3:c.1519G>C	p.Glu507Gln	p.E507Q	ENST00000377110		507	Gag/Cag	0	
GAS1	2619		GRCh37	9	89560869	89560869	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000298743.7:c.826G>A	p.Gly276Arg	p.G276R	ENST00000298743	NM_002048.2	276	Ggg/Agg	0	
COL15A1	1306		GRCh37	9	101751505	101751505	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000375001.3:c.769G>C	p.Glu257Gln	p.E257Q	ENST00000375001	NM_001855.4	257	Gag/Cag	0	
LHX3	8022		GRCh37	9	139092501	139092501	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_111																					ENST00000371748.5:c.178G>T	p.Asp60Tyr	p.D60Y	ENST00000371748	NM_178138.4	60	Gac/Tac	0	
NPDC1	56654		GRCh37	9	139934856	139934856	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000371601.4:c.741G>C	p.Glu247Asp	p.E247D	ENST00000371601	NM_015392.3	247	gaG/gaC	0	
PNPLA7	375775		GRCh37	9	140355181	140355181	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_111																					ENST00000277531.4:c.3775G>T	p.Asp1259Tyr	p.D1259Y	ENST00000277531	NM_152286.3	1259	Gac/Tac	0	
PNPLA7	375775		GRCh37	9	140396109	140396109	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000277531.4:c.1469G>C	p.Gly490Ala	p.G490A	ENST00000277531	NM_152286.3	490	gGa/gCa	0	
IDI2	91734		GRCh37	10	1065775	1065775	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000277517.1:c.367-1G>C		p.X123_splice	ENST00000277517	NM_033261.2	123		0	
FAM107B	83641		GRCh37	10	14563914	14563914	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000378458.2:c.233C>G	p.Ser78Cys	p.S78C	ENST00000378458		78	tCt/tGt	0	
KIAA1217	56243		GRCh37	10	24833974	24833974	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000376454.3:c.5276G>C	p.Gly1759Ala	p.G1759A	ENST00000376454	NM_019590.3	1759	gGa/gCa	0	
THNSL1	79896		GRCh37	10	25313153	25313153	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000376356.4:c.1001C>T	p.Ser334Leu	p.S334L	ENST00000376356	NM_024838.4	334	tCa/tTa	0	
CCNY	219771		GRCh37	10	35625998	35625998	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000374704.4:c.17C>G	p.Ser6Trp	p.S6W	ENST00000374704	NM_145012.4	6	tCg/tGg	0	
ZNF37A	7587		GRCh37	10	38406734	38406734	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000351773.3:c.655C>G	p.Gln219Glu	p.Q219E	ENST00000351773	NM_001007094.2	219	Cag/Gag	0	
CHAT	1103		GRCh37	10	50872982	50872982	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000337653.2:c.2137G>A	p.Glu713Lys	p.E713K	ENST00000337653	NM_020549.4	713	Gaa/Aaa	0	
ANK3	288		GRCh37	10	61828587	61828587	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000280772.2:c.12052G>A	p.Glu4018Lys	p.E4018K	ENST00000280772	NM_020987.3	4018	Gaa/Aaa	0	
PLAU	5328		GRCh37	10	75672702	75672702	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000372764.3:c.214G>C	p.Glu72Gln	p.E72Q	ENST00000372764	NM_002658.3	72	Gag/Cag	0	
PCGF5	84333		GRCh37	10	93000327	93000327	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000336126.5:c.199G>C	p.Glu67Gln	p.E67Q	ENST00000336126	NM_032373.4	67	Gaa/Caa	0	
PKD2L1	9033		GRCh37	10	102048752	102048752	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000318222.3:c.2312G>A	p.Gly771Glu	p.G771E	ENST00000318222	NM_016112.2	771	gGa/gAa	0	
BAG3	9531		GRCh37	10	121436536	121436536	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000369085.3:c.1470C>G	p.Ile490Met	p.I490M	ENST00000369085	NM_004281.3	490	atC/atG	0	
MCMBP	79892		GRCh37	10	121607202	121607202	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000360003.3:c.750C>G	p.Phe250Leu	p.F250L	ENST00000360003	NM_001256378.1	250	ttC/ttG	0	
SLC25A22	79751		GRCh37	11	794498	794498	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000320230.5:c.162C>G	p.Ile54Met	p.I54M	ENST00000320230	NM_024698.5	54	atC/atG	0	
C11orf74	119710		GRCh37	11	36654846	36654846	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000334307.5:c.149C>G	p.Ser50Cys	p.S50C	ENST00000334307	NM_001276722.1	50	tCc/tGc	0	
MARK2	2011		GRCh37	11	63668294	63668294	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000402010.2:c.931G>A	p.Asp311Asn	p.D311N	ENST00000402010	NM_001039469.2	311	Gat/Aat	0	
DPF2	5977		GRCh37	11	65111246	65111246	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000528416.1:c.496G>A	p.Asp166Asn	p.D166N	ENST00000528416	NM_006268.4	166	Gac/Aac	0	
C11orf80	79703		GRCh37	11	66515950	66515950	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000525908.1:c.131C>G	p.Ser44Cys	p.S44C	ENST00000525908		44	tCt/tGt	0	
EED	8726		GRCh37	11	85975252	85975252	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000263360.6:c.673C>G	p.Leu225Val	p.L225V	ENST00000263360	NM_003797.3	225	Ctg/Gtg	0	
CNTN5	53942		GRCh37	11	100168423	100168423	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000524871.1:c.2381G>A	p.Trp794Ter	p.W794*	ENST00000524871	NM_014361.3	794	tGg/tAg	0	
ATM	472		GRCh37	11	108158326	108158326	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000278616.4:c.3994-1G>C		p.X1332_splice	ENST00000278616	NM_000051.3	1332		0	
ATM	472		GRCh37	11	108206661	108206661	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000278616.4:c.8241G>C	p.Lys2747Asn	p.K2747N	ENST00000278616	NM_000051.3	2747	aaG/aaC	0	
IFT46	56912		GRCh37	11	118425783	118425783	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_111																					ENST00000264021.3:c.276G>T	p.Leu92Phe	p.L92F	ENST00000264021	NM_001168618.1	92	ttG/ttT	0	
RP11-664I21.6			GRCh37	11	124761919	124761919	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000524433.1:c.104C>T	p.Ser35Leu	p.S35L	ENST00000524433		35	tCa/tTa	0	
CCND2	894		GRCh37	12	4409039	4409039	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000261254.3:c.734C>T	p.Ala245Val	p.A245V	ENST00000261254	NM_001759.3	245	gCt/gTt	0	
PIANP	196500		GRCh37	12	6804802	6804802	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000320591.5:c.621G>C	p.Gln207His	p.Q207H	ENST00000320591	NM_153685.3	207	caG/caC	0	
C1R	715		GRCh37	12	7188438	7188438	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000542285.1:c.1360C>T	p.Pro454Ser	p.P454S	ENST00000542285		454	Ccc/Tcc	0	
CLEC1A	51267		GRCh37	12	10241806	10241806	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_111																					ENST00000315330.4:c.131C>A	p.Ser44Tyr	p.S44Y	ENST00000315330	NM_016511.2	44	tCt/tAt	0	
SLC15A5	729025		GRCh37	12	16369832	16369832	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000344941.3:c.1478C>T	p.Ser493Leu	p.S493L	ENST00000344941	NM_001170798.1	493	tCa/tTa	0	
ABCC9	10060		GRCh37	12	22068769	22068769	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000261201.4:c.649C>T	p.Gln217Ter	p.Q217*	ENST00000261201	NM_005691.2	217	Caa/Taa	0	
KRT76	51350		GRCh37	12	53170969	53170969	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000332411.2:c.107C>G	p.Ser36Cys	p.S36C	ENST00000332411	NM_015848.4	36	tCt/tGt	0	
PPFIA2	8499		GRCh37	12	81719572	81719572	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000549396.1:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000549396	NM_003625.3	876	Cga/Tga	0	
TMEM116	89894		GRCh37	12	112374496	112374496	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000550831.3:c.312G>A	p.Met104Ile	p.M104I	ENST00000550831	NM_138341.2	104	atG/atA	0	
SETD1B	23067		GRCh37	12	122260614	122260614	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000604567.1:c.4129G>A	p.Glu1377Lys	p.E1377K	ENST00000604567		1377	Gag/Aag	0	
HPD	3242		GRCh37	12	122277851	122277851	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000289004.4:c.1058G>A	p.Arg353His	p.R353H	ENST00000289004	NM_002150.2	353	cGc/cAc	0	
ZCCHC8	55596		GRCh37	12	122962400	122962400	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000336229.4:c.1333G>C	p.Glu445Gln	p.E445Q	ENST00000336229	NM_017612.3	445	Gag/Cag	0	
DNAH10	196385		GRCh37	12	124393848	124393848	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_111																					ENST00000409039.3:c.9502G>T	p.Glu3168Ter	p.E3168*	ENST00000409039	NM_207437.3	3168	Gaa/Taa	0	
ZMYM5	9205		GRCh37	13	20399152	20399152	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000337963.4:c.1475C>T	p.Ser492Phe	p.S492F	ENST00000337963	NM_001142684.1	492	tCc/tTc	0	
RXFP2	122042		GRCh37	13	32356852	32356852	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000298386.2:c.897G>C	p.Lys299Asn	p.K299N	ENST00000298386	NM_130806.3	299	aaG/aaC	0	
FREM2	341640		GRCh37	13	39452288	39452288	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000280481.7:c.8689C>T	p.Arg2897Cys	p.R2897C	ENST00000280481	NM_207361.4	2897	Cgt/Tgt	0	
TNFSF11	8600		GRCh37	13	43180974	43180974	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000398795.2:c.655G>A	p.Glu219Lys	p.E219K	ENST00000398795	NM_003701.3	219	Gag/Aag	0	
SETDB2	83852		GRCh37	13	50056917	50056917	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000354234.4:c.1201G>A	p.Asp401Asn	p.D401N	ENST00000354234	NM_001160308.1	401	Gat/Aat	0	
WDFY2	115825		GRCh37	13	52301924	52301924	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000298125.5:c.596C>T	p.Thr199Ile	p.T199I	ENST00000298125	NM_052950.3	199	aCa/aTa	0	
NALCN	259232		GRCh37	13	101757278	101757278	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000251127.6:c.2603G>A	p.Gly868Glu	p.G868E	ENST00000251127	NM_052867.2	868	gGa/gAa	0	
TPP2	7174		GRCh37	13	103280204	103280204	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000376065.4:c.946G>C	p.Glu316Gln	p.E316Q	ENST00000376065	NM_003291.2	316	Gaa/Caa	0	
OR4K17	390436		GRCh37	14	20585871	20585871	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000315543.4:c.306G>A	p.Met102Ile	p.M102I	ENST00000315543	NM_001004715.1	102	atG/atA	0	
NYNRIN	57523		GRCh37	14	24877513	24877513	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000382554.3:c.637G>C	p.Asp213His	p.D213H	ENST00000382554	NM_025081.2	213	Gac/Cac	0	
KCNH5	27133		GRCh37	14	63174516	63174516	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000322893.7:c.2677G>A	p.Asp893Asn	p.D893N	ENST00000322893	NM_139318.4	893	Gat/Aat	0	
SYNE2	23224		GRCh37	14	64465727	64465727	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000344113.4:c.3449C>T	p.Ser1150Phe	p.S1150F	ENST00000344113	NM_015180.4	1150	tCt/tTt	0	
ATXN3	4287		GRCh37	14	92530678	92530678	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000393287.5:c.1072G>A	p.Glu358Lys	p.E358K	ENST00000393287		358	Gaa/Aaa	0	
CHGA	1113		GRCh37	14	93393897	93393897	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000216492.5:c.190G>A	p.Glu64Lys	p.E64K	ENST00000216492	NM_001275.3	64	Gaa/Aaa	0	
PPP4R4	57718		GRCh37	14	94741839	94741839	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000304338.3:c.2578C>G	p.Gln860Glu	p.Q860E	ENST00000304338	NM_058237.1	860	Caa/Gaa	0	
CLMN	79789		GRCh37	14	95679670	95679670	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000298912.4:c.494C>G	p.Ser165Ter	p.S165*	ENST00000298912	NM_024734.3	165	tCa/tGa	0	
ATP10A	57194		GRCh37	15	25936924	25936924	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000356865.6:c.3103G>A	p.Asp1035Asn	p.D1035N	ENST00000356865	NM_024490.3	1035	Gat/Aat	0	
FMN1	342184		GRCh37	15	33446390	33446390	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000559047.1:c.726G>C	p.Lys242Asn	p.K242N	ENST00000559047	NM_001277313.1	242	aaG/aaC	0	
RTF1	23168		GRCh37	15	41709497	41709497	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000389629.4:c.184G>C	p.Glu62Gln	p.E62Q	ENST00000389629	NM_015138.4	62	Gag/Cag	0	
MYO5A	4644		GRCh37	15	52609340	52609340	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000399231.3:c.5239C>G	p.Leu1747Val	p.L1747V	ENST00000399231	NM_000259.3	1747	Ctc/Gtc	0	
ANXA2	302		GRCh37	15	60674589	60674589	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000396024.3:c.100G>C	p.Asp34His	p.D34H	ENST00000396024	NM_001136015.2	34	Gat/Cat	0	
SPESP1	246777		GRCh37	15	69238498	69238498	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000310673.3:c.625G>C	p.Glu209Gln	p.E209Q	ENST00000310673	NM_145658.3	209	Gaa/Caa	0	
TLE3	7090		GRCh37	15	70347629	70347629	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000558939.1:c.1346C>G	p.Ser449Ter	p.S449*	ENST00000558939	NM_001282979.1	449	tCa/tGa	0	
NEO1	4756		GRCh37	15	73536836	73536836	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000261908.6:c.1603G>A	p.Glu535Lys	p.E535K	ENST00000261908	NM_002499.3	535	Gag/Aag	0	
RASGRF1	5923		GRCh37	15	79312447	79312447	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000419573.3:c.1543-1G>C		p.X515_splice	ENST00000419573	NM_002891.4	515		0	
KLHL25	64410		GRCh37	15	86312719	86312719	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000337975.5:c.323C>T	p.Ser108Leu	p.S108L	ENST00000337975	NM_022480.3	108	tCa/tTa	0	
KIF7	374654		GRCh37	15	90172780	90172780	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000394412.3:c.3343C>T	p.His1115Tyr	p.H1115Y	ENST00000394412	NM_198525.2	1115	Cac/Tac	0	
VPS33B	26276		GRCh37	15	91542223	91542223	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_111																					ENST00000333371.3:c.1836G>T	p.Met612Ile	p.M612I	ENST00000333371	NM_018668.3	612	atG/atT	0	
ADAMTS17	170691		GRCh37	15	100881506	100881506	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000268070.4:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000268070	NM_139057.2	63	cGa/cAa	0	
MAPK8IP3	23162		GRCh37	16	1813716	1813716	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000250894.4:c.1954G>A	p.Glu652Lys	p.E652K	ENST00000250894	NM_015133.3	652	Gag/Aag	0	
CLUAP1	23059		GRCh37	16	3554736	3554736	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000576634.1:c.39G>A	p.Met13Ile	p.M13I	ENST00000576634	NM_015041.2	13	atG/atA	0	
ZC3H7A	29066		GRCh37	16	11873192	11873192	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000355758.4:c.136C>G	p.Leu46Val	p.L46V	ENST00000355758	NM_014153.3	46	Ctt/Gtt	0	
TP53	7157		GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag	0	
FLII	2314		GRCh37	17	18154205	18154205	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000327031.4:c.1723G>C	p.Glu575Gln	p.E575Q	ENST00000327031	NM_002018.3	575	Gag/Cag	0	
ALDOC	230		GRCh37	17	26902460	26902460	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000226253.4:c.91C>G	p.Leu31Val	p.L31V	ENST00000226253	NM_005165.2	31	Ctg/Gtg	0	
MYO18A	399687		GRCh37	17	27493336	27493336	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000527372.1:c.623C>G	p.Pro208Arg	p.P208R	ENST00000527372	NM_078471.3	208	cCc/cGc	0	
ATAD5	79915		GRCh37	17	29192733	29192733	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_111																					ENST00000321990.4:c.3148G>T	p.Glu1050Ter	p.E1050*	ENST00000321990	NM_024857.3	1050	Gaa/Taa	0	
NF1	4763		GRCh37	17	29653166	29653166	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_111																					ENST00000358273.4:c.5164G>T	p.Glu1722Ter	p.E1722*	ENST00000358273	NM_001042492.2	1722	Gaa/Taa	0	
CACNA1G	8913		GRCh37	17	48683264	48683264	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000359106.5:c.4302C>G	p.Phe1434Leu	p.F1434L	ENST00000359106	NM_018896.4	1434	ttC/ttG	0	
MARCH10	162333		GRCh37	17	60813847	60813847	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000311269.5:c.1382C>G	p.Ser461Cys	p.S461C	ENST00000311269	NM_152598.2	461	tCt/tGt	0	
ABCA6	23460		GRCh37	17	67136842	67136842	+	start_lost	Translation_Start_Site	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000284425.2:c.3G>C	p.Met1?	p.M1?	ENST00000284425	NM_080284.2	1	atG/atC	0	
RP11-318A15.7			GRCh37	17	74734379	74734379	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_111																					ENST00000587459.1:c.254C>A	p.Ser85Ter	p.S85*	ENST00000587459		85	tCg/tAg	0	
DNAH17	8632		GRCh37	17	76488718	76488718	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000389840.5:c.6496G>C	p.Asp2166His	p.D2166H	ENST00000389840		2166	Gat/Cat	0	
DLGAP1	9229		GRCh37	18	3582028	3582028	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000315677.3:c.1810G>A	p.Glu604Lys	p.E604K	ENST00000315677	NM_004746.3	604	Gaa/Aaa	0	
ANKRD62	342850		GRCh37	18	12107462	12107462	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000587848.2:c.1060G>C	p.Asp354His	p.D354H	ENST00000587848		354	Gat/Cat	0	
PTPN2	5771		GRCh37	18	12884092	12884092	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_111																					ENST00000309660.5:c.49C>A	p.Arg17Ser	p.R17S	ENST00000309660	NM_002828.3	17	Cgc/Agc	0	
DSC3	1825		GRCh37	18	28574262	28574262	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000360428.4:c.2570G>A	p.Arg857Lys	p.R857K	ENST00000360428	NM_001941.3	857	aGa/aAa	0	
DSC1	1823		GRCh37	18	28721961	28721961	+	splice_donor_variant	Splice_Site	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000257198.5:c.1260+1G>A		p.X420_splice	ENST00000257198	NM_024421.2	420		0	
DSG3	1830		GRCh37	18	29046660	29046660	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000257189.4:c.1579G>A	p.Ala527Thr	p.A527T	ENST00000257189	NM_001944.2	527	Gca/Aca	0	
MADCAM1	8174		GRCh37	19	497943	497943	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000215637.3:c.163G>A	p.Gly55Arg	p.G55R	ENST00000215637	NM_130760.2	55	Ggg/Agg	0	
SBNO2	22904		GRCh37	19	1109389	1109389	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000361757.3:c.3250G>A	p.Glu1084Lys	p.E1084K	ENST00000361757	NM_014963.2	1084	Gag/Aag	0	
REXO1	57455		GRCh37	19	1848308	1848308	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000170168.4:c.50C>G	p.Ser17Cys	p.S17C	ENST00000170168	NM_020695.3	17	tCt/tGt	0	
FEM1A	55527		GRCh37	19	4793323	4793323	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000269856.3:c.1457G>C	p.Gly486Ala	p.G486A	ENST00000269856	NM_018708.2	486	gGa/gCa	0	
ACTL9	284382		GRCh37	19	8808639	8808639	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000324436.3:c.413G>C	p.Arg138Pro	p.R138P	ENST00000324436	NM_178525.3	138	cGa/cCa	0	
ZNF317	57693		GRCh37	19	9271396	9271396	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000247956.6:c.1075G>A	p.Glu359Lys	p.E359K	ENST00000247956	NM_020933.4	359	Gag/Aag	0	
CC2D1A	54862		GRCh37	19	14028969	14028969	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000318003.7:c.835G>C	p.Asp279His	p.D279H	ENST00000318003	NM_017721.4	279	Gat/Cat	0	
CIB3	117286		GRCh37	19	16275686	16275686	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_111																					ENST00000269878.4:c.385G>T	p.Glu129Ter	p.E129*	ENST00000269878	NM_054113.2	129	Gag/Tag	0	
NWD1	284434		GRCh37	19	16908695	16908695	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000552788.1:c.3457C>G	p.Gln1153Glu	p.Q1153E	ENST00000552788		1153	Cag/Gag	0	
ANKLE1	126549		GRCh37	19	17395068	17395068	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_111																					ENST00000394458.3:c.1369G>T	p.Asp457Tyr	p.D457Y	ENST00000394458	NM_001278444.1	457	Gac/Tac	0	
JAK3	3718		GRCh37	19	17948869	17948869	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000458235.1:c.1573G>A	p.Glu525Lys	p.E525K	ENST00000458235	NM_000215.3	525	Gag/Aag	0	
CRLF1	9244		GRCh37	19	18710558	18710558	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000392386.3:c.214G>A	p.Glu72Lys	p.E72K	ENST00000392386	NM_004750.4	72	Gag/Aag	0	
GAPDHS	26330		GRCh37	19	36034596	36034596	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000222286.4:c.923C>G	p.Pro308Arg	p.P308R	ENST00000222286	NM_014364.4	308	cCa/cGa	0	
ZNF569	148266		GRCh37	19	37903930	37903930	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000316950.6:c.1630C>T	p.His544Tyr	p.H544Y	ENST00000316950	NM_152484.2	544	Cat/Tat	0	
RASGRP4	115727		GRCh37	19	38910521	38910521	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000587738.1:c.642C>G	p.Phe214Leu	p.F214L	ENST00000587738		214	ttC/ttG	0	
ACTN4	81		GRCh37	19	39138530	39138530	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000252699.2:c.145G>A	p.Glu49Lys	p.E49K	ENST00000252699	NM_004924.4	49	Gag/Aag	0	
ZNF155	7711		GRCh37	19	44501146	44501146	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000270014.2:c.1137G>C	p.Lys379Asn	p.K379N	ENST00000270014	NM_198089.2	379	aaG/aaC	0	
ZNF284	342909		GRCh37	19	44590103	44590103	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000421176.3:c.472G>A	p.Asp158Asn	p.D158N	ENST00000421176	NM_001037813.2	158	Gat/Aat	0	
NOVA2	4858		GRCh37	19	46464409	46464409	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_111																					ENST00000263257.5:c.88G>T	p.Glu30Ter	p.E30*	ENST00000263257	NM_002516.2	30	Gaa/Taa	0	
ZNF541	84215		GRCh37	19	48049056	48049056	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000391901.3:c.730G>C	p.Glu244Gln	p.E244Q	ENST00000391901	NM_001277075.1	244	Gag/Cag	0	
GLTSCR1			GRCh37	19	48202227	48202227	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000396720.3:c.3403G>A	p.Glu1135Lys	p.E1135K	ENST00000396720	NM_015711.3	1135	Gag/Aag	0	
FGF21	26291		GRCh37	19	49260213	49260213	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000222157.3:c.266G>C	p.Gly89Ala	p.G89A	ENST00000222157	NM_019113.2	89	gGa/gCa	0	
SHANK1	50944		GRCh37	19	51169533	51169533	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000293441.1:c.5684G>C	p.Arg1895Pro	p.R1895P	ENST00000293441	NM_016148.2	1895	cGa/cCa	0	
KLK4	9622		GRCh37	19	51411748	51411748	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000324041.1:c.479G>A	p.Arg160Lys	p.R160K	ENST00000324041	NM_004917.3	160	aGa/aAa	0	
ZNF321P	399669		GRCh37	19	53432512	53432512	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000391777.3:c.346C>T	p.Gln116Ter	p.Q116*	ENST00000391777		116	Cag/Tag	0	
TMC4	147798		GRCh37	19	54669228	54669228	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000376591.4:c.888C>G	p.Phe296Leu	p.F296L	ENST00000376591	NM_001145303.1	296	ttC/ttG	0	
KIR3DL3	115653		GRCh37	19	55236013	55236013	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000291860.1:c.12G>A	p.Met4Ile	p.M4I	ENST00000291860	NM_153443.3	4	atG/atA	0	
ZNF264	9422		GRCh37	19	57723129	57723129	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000263095.6:c.664G>A	p.Glu222Lys	p.E222K	ENST00000263095	NM_003417.4	222	Gag/Aag	0	
ZNF134	7693		GRCh37	19	58131770	58131770	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000396161.5:c.283C>T	p.Gln95Ter	p.Q95*	ENST00000396161	NM_003435.3	95	Cag/Tag	0	
CENPB	1059		GRCh37	20	3766568	3766568	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000379751.4:c.563C>T	p.Ser188Leu	p.S188L	ENST00000379751	NM_001810.5	188	tCg/tTg	0	
ESF1	51575		GRCh37	20	13755862	13755862	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000202816.1:c.1090G>C	p.Asp364His	p.D364H	ENST00000202816	NM_001276380.1	364	Gat/Cat	0	
DZANK1	55184		GRCh37	20	18393452	18393452	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000262547.5:c.1270G>C	p.Asp424His	p.D424H	ENST00000262547	NM_001099407.1	424	Gat/Cat	0	
KIF3B	9371		GRCh37	20	30898464	30898464	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000375712.3:c.884C>G	p.Ser295Ter	p.S295*	ENST00000375712	NM_004798.3	295	tCa/tGa	0	
ITCH	83737		GRCh37	20	33030072	33030072	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000262650.6:c.1052G>C	p.Arg351Thr	p.R351T	ENST00000262650		351	aGa/aCa	0	
SOGA1	140710		GRCh37	20	35491122	35491122	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000237536.4:c.626G>A	p.Cys209Tyr	p.C209Y	ENST00000237536	NM_080627.2	209	tGc/tAc	0	
PTPRT	11122		GRCh37	20	40790026	40790026	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000373187.1:c.2648G>C	p.Arg883Thr	p.R883T	ENST00000373187		883	aGa/aCa	0	
BCAS1	8537		GRCh37	20	52612516	52612516	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_111																					ENST00000395961.3:c.797A>T	p.Glu266Val	p.E266V	ENST00000395961	NM_003657.2	266	gAa/gTa	0	
BCAS1	8537		GRCh37	20	52612517	52612517	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000395961.3:c.796G>A	p.Glu266Lys	p.E266K	ENST00000395961	NM_003657.2	266	Gaa/Aaa	0	
CASS4	57091		GRCh37	20	55012523	55012523	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_111																					ENST00000360314.3:c.340G>T	p.Glu114Ter	p.E114*	ENST00000360314	NM_001164116.1	114	Gag/Tag	0	
PHACTR3	116154		GRCh37	20	58349309	58349309	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000371015.1:c.938G>C	p.Arg313Thr	p.R313T	ENST00000371015	NM_080672.4	313	aGa/aCa	0	
TAF4	6874		GRCh37	20	60640853	60640853	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000252996.4:c.14C>T	p.Ser5Leu	p.S5L	ENST00000252996	NM_003185.3	5	tCg/tTg	0	
ZBTB46	140685		GRCh37	20	62421516	62421516	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000245663.4:c.595G>A	p.Glu199Lys	p.E199K	ENST00000245663	NM_025224.3	199	Gag/Aag	0	
NCAM2	4685		GRCh37	21	22881354	22881354	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000400546.1:c.2260G>C	p.Glu754Gln	p.E754Q	ENST00000400546	NM_004540.3	754	Gaa/Caa	0	
RUNX1	861		GRCh37	21	36164827	36164827	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000344691.4:c.967C>G	p.Pro323Ala	p.P323A	ENST00000344691	NM_001001890.2	323	Cca/Gca	0	
SEZ6L	23544		GRCh37	22	26771634	26771634	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_111																					ENST00000248933.6:c.2921G>T	p.Gly974Val	p.G974V	ENST00000248933		974	gGa/gTa	0	
CYP2D6	1565		GRCh37	22	42523970	42523970	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000360608.5:c.859G>A	p.Glu287Lys	p.E287K	ENST00000360608	NM_000106.5	287	Gag/Aag	0	
CELSR1	9620		GRCh37	22	46787123	46787123	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_111																					ENST00000262738.3:c.6210C>A	p.Phe2070Leu	p.F2070L	ENST00000262738	NM_014246.1	2070	ttC/ttA	0	
TBC1D22A	25771		GRCh37	22	47158703	47158703	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000337137.4:c.20G>A	p.Arg7Lys	p.R7K	ENST00000337137	NM_014346.2	7	aGg/aAg	0	
ZBED4	9889		GRCh37	22	50277734	50277734	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000216268.5:c.424G>C	p.Glu142Gln	p.E142Q	ENST00000216268	NM_014838.2	142	Gag/Cag	0	
ACE2	59272		GRCh37	X	15609852	15609852	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000252519.3:c.567G>C	p.Glu189Asp	p.E189D	ENST00000252519		189	gaG/gaC	0	
MAGEB17	645864		GRCh37	X	16188590	16188590	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000400003.1:c.85C>G	p.Gln29Glu	p.Q29E	ENST00000400003		29	Caa/Gaa	0	
NHS	4810		GRCh37	X	17743526	17743526	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_111																					ENST00000380060.3:c.1237C>T	p.Pro413Ser	p.P413S	ENST00000380060	NM_198270.2	413	Ccc/Tcc	0	
HUWE1	10075		GRCh37	X	53619384	53619384	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_111																					ENST00000262854.6:c.3946C>G	p.Gln1316Glu	p.Q1316E	ENST00000262854	NM_031407.5	1316	Caa/Gaa	0	
MORC4	79710		GRCh37	X	106224676	106224676	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000355610.4:c.706G>C	p.Asp236His	p.D236H	ENST00000355610	NM_001085354.2	236	Gat/Cat	0	
STAG2	10735		GRCh37	X	123220599	123220599	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_111																					ENST00000371144.3:c.3256G>A	p.Glu1086Lys	p.E1086K	ENST00000371144	NM_001042751.1	1086	Gag/Aag	0	
OCRL	4952		GRCh37	X	128701240	128701240	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000371113.4:c.1366C>G	p.Gln456Glu	p.Q456E	ENST00000371113	NM_000276.3	456	Cag/Gag	0	
ELF4	2000		GRCh37	X	129201353	129201353	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000308167.5:c.1335G>C	p.Gln445His	p.Q445H	ENST00000308167	NM_001421.3	445	caG/caC	0	
HCFC1	3054		GRCh37	X	153220695	153220695	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_111																					ENST00000310441.7:c.3155G>C	p.Arg1052Thr	p.R1052T	ENST00000310441	NM_005334.2	1052	aGa/aCa	0	
PANK4	55229		GRCh37	1	2458013	2458013	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000378466.3:c.14G>C	p.Gly5Ala	p.G5A	ENST00000378466	NM_018216.1	5	gGa/gCa	0	
KIF17	57576		GRCh37	1	21013921	21013921	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000247986.2:c.1898C>G	p.Thr633Arg	p.T633R	ENST00000247986		633	aCa/aGa	0	
CCDC18	343099		GRCh37	1	93671166	93671166	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000343253.7:c.895G>C	p.Glu299Gln	p.E299Q	ENST00000343253		299	Gaa/Caa	0	
BCAR3	8412		GRCh37	1	94048021	94048021	+	missense_variant	Missense_Mutation	SNP	A	A	C			brca_smc_2018_BB01_103																					ENST00000260502.6:c.1523T>G	p.Leu508Arg	p.L508R	ENST00000260502	NM_003567.3	508	cTc/cGc	0	
GJA5	2702		GRCh37	1	147230364	147230364	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_103																					ENST00000271348.2:c.983C>T	p.Ser328Leu	p.S328L	ENST00000271348	NM_005266.6	328	tCa/tTa	0	
PLEKHO1	51177		GRCh37	1	150131101	150131101	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000369124.4:c.613G>C	p.Glu205Gln	p.E205Q	ENST00000369124	NM_016274.4	205	Gag/Cag	0	
NES	10763		GRCh37	1	156640448	156640448	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000368223.3:c.3532G>A	p.Glu1178Lys	p.E1178K	ENST00000368223	NM_006617.1	1178	Gag/Aag	0	
KLHL20	27252		GRCh37	1	173702872	173702872	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000209884.4:c.44G>C	p.Gly15Ala	p.G15A	ENST00000209884	NM_014458.3	15	gGa/gCa	0	
KIAA1614	57710		GRCh37	1	180882383	180882383	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000367588.4:c.4G>C	p.Glu2Gln	p.E2Q	ENST00000367588	NM_020950.1	2	Gag/Cag	0	
RGSL1	353299		GRCh37	1	182423154	182423154	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000294854.8:c.75C>G	p.Phe25Leu	p.F25L	ENST00000294854	NM_001137669.1	25	ttC/ttG	0	
CR1	1378		GRCh37	1	207789919	207789919	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000367051.1:c.5312-1G>C		p.X1771_splice	ENST00000367051		1771		0	
USH2A	7399		GRCh37	1	216371668	216371668	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_103																					ENST00000307340.3:c.4070C>T	p.Thr1357Met	p.T1357M	ENST00000307340	NM_206933.2	1357	aCg/aTg	0	
EPRS	2058		GRCh37	1	220170425	220170425	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000366923.3:c.2441C>G	p.Ser814Cys	p.S814C	ENST00000366923	NM_004446.2	814	tCt/tGt	0	
LPIN1	23175		GRCh37	2	11911580	11911580	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000256720.2:c.371C>G	p.Ser124Cys	p.S124C	ENST00000256720	NM_145693.2	124	tCt/tGt	0	
GAREML			GRCh37	2	26410528	26410528	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000401533.2:c.2027C>T	p.Ser676Leu	p.S676L	ENST00000401533	NM_001168241.1	676	tCa/tTa	0	
GPN1	11321		GRCh37	2	27861103	27861103	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_103																					ENST00000610189.1:c.551T>A	p.Phe184Tyr	p.F184Y	ENST00000610189	NM_007266.3	184	tTc/tAc	0	
PLB1	151056		GRCh37	2	28812875	28812875	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000327757.5:c.2020G>C	p.Glu674Gln	p.E674Q	ENST00000327757	NM_153021.4	674	Gag/Cag	0	
ALK	238		GRCh37	2	29917812	29917812	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000389048.3:c.856C>G	p.Gln286Glu	p.Q286E	ENST00000389048	NM_004304.4	286	Cag/Gag	0	
KANSL3	55683		GRCh37	2	97274248	97274248	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000431828.1:c.1738C>G	p.Gln580Glu	p.Q580E	ENST00000431828		580	Caa/Gaa	0	
RANBP2	5903		GRCh37	2	109380675	109380675	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_103																					ENST00000283195.6:c.3680C>A	p.Ser1227Tyr	p.S1227Y	ENST00000283195	NM_006267.4	1227	tCt/tAt	0	
MERTK	10461		GRCh37	2	112686747	112686747	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000295408.4:c.112C>G	p.Pro38Ala	p.P38A	ENST00000295408		38	Cct/Gct	0	
TTL	150465		GRCh37	2	113277935	113277935	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000233336.6:c.952G>C	p.Asp318His	p.D318H	ENST00000233336	NM_153712.4	318	Gac/Cac	0	
IWS1	55677		GRCh37	2	128246801	128246801	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_103																					ENST00000295321.4:c.2170C>A	p.Gln724Lys	p.Q724K	ENST00000295321	NM_017969.2	724	Cag/Aag	0	
MYO7B	4648		GRCh37	2	128384562	128384562	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000409816.2:c.4150C>G	p.Gln1384Glu	p.Q1384E	ENST00000409816		1384	Cag/Gag	0	
UBR3	130507		GRCh37	2	170936360	170936360	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000272793.5:c.5236C>T	p.His1746Tyr	p.H1746Y	ENST00000272793		1746	Cac/Tac	0	
DNAH7	56171		GRCh37	2	196709823	196709823	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000312428.6:c.8848C>G	p.Leu2950Val	p.L2950V	ENST00000312428	NM_018897.2	2950	Ctt/Gtt	0	
ALS2	57679		GRCh37	2	202591516	202591516	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000264276.6:c.3053G>C	p.Gly1018Ala	p.G1018A	ENST00000264276	NM_020919.3	1018	gGa/gCa	0	
ERBB4	2066		GRCh37	2	212812205	212812205	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_103																					ENST00000342788.4:c.371G>T	p.Arg124Ile	p.R124I	ENST00000342788	NM_005235.2	124	aGa/aTa	0	
ACSL3	2181		GRCh37	2	223791754	223791754	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000357430.3:c.1312C>G	p.Arg438Gly	p.R438G	ENST00000357430	NM_004457.3	438	Cga/Gga	0	
C2orf83	56918		GRCh37	2	228497685	228497685	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_103																					ENST00000264387.4:c.117G>T	p.Gln39His	p.Q39H	ENST00000264387	NM_020161.3	39	caG/caT	0	
MYEOV2			GRCh37	2	241075641	241075641	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000607357.1:c.61G>C	p.Glu21Gln	p.E21Q	ENST00000607357	NM_001163424.1	21	Gag/Cag	0	
AGXT	189		GRCh37	2	241815393	241815393	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000307503.3:c.818G>C	p.Arg273Thr	p.R273T	ENST00000307503	NM_000030.2	273	aGa/aCa	0	
RPUSD3	285367		GRCh37	3	9880718	9880718	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_103																					ENST00000383820.5:c.862C>A	p.Gln288Lys	p.Q288K	ENST00000383820	NM_173659.3	288	Cag/Aag	0	
RFTN1	23180		GRCh37	3	16535346	16535346	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000334133.4:c.31C>G	p.Arg11Gly	p.R11G	ENST00000334133	NM_015150.1	11	Cgt/Ggt	0	
PLXNB1	5364		GRCh37	3	48455119	48455119	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000296440.6:c.4495C>G	p.Leu1499Val	p.L1499V	ENST00000296440	NM_001130082.1	1499	Ctt/Gtt	0	
BSN	8927		GRCh37	3	49695333	49695333	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000296452.4:c.8344C>T	p.Leu2782Phe	p.L2782F	ENST00000296452	NM_003458.3	2782	Ctt/Ttt	0	
CISH	1154		GRCh37	3	50645819	50645819	+	missense_variant	Missense_Mutation	SNP	A	A	T			brca_smc_2018_BB01_103																					ENST00000348721.3:c.226T>A	p.Tyr76Asn	p.Y76N	ENST00000348721	NM_145071.2	76	Tac/Aac	0	
FOXP1	27086		GRCh37	3	71021734	71021734	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_103																					ENST00000318789.4:c.1624C>T	p.Gln542Ter	p.Q542*	ENST00000318789	NM_032682.5	542	Caa/Taa	0	
SNX4	8723		GRCh37	3	125176173	125176173	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000251775.4:c.981C>G	p.Asp327Glu	p.D327E	ENST00000251775	NM_003794.3	327	gaC/gaG	0	
EIF2B5	8893		GRCh37	3	183853196	183853196	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000273783.3:c.23C>T	p.Pro8Leu	p.P8L	ENST00000273783	NM_003907.2	8	cCg/cTg	0	
ECE2	9718		GRCh37	3	183975428	183975428	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_103																					ENST00000402825.3:c.364G>T	p.Ala122Ser	p.A122S	ENST00000402825	NM_014693.3	122	Gct/Tct	0	
DCAF16	54876		GRCh37	4	17805521	17805521	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000382247.1:c.244G>C	p.Asp82His	p.D82H	ENST00000382247	NM_017741.3	82	Gat/Cat	0	
KDR	3791		GRCh37	4	55979645	55979645	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_103																					ENST00000263923.4:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000263923	NM_002253.2	268	Cag/Tag	0	
ADAMTS3	9508		GRCh37	4	73181625	73181625	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_103																					ENST00000286657.4:c.1549A>G	p.Lys517Glu	p.K517E	ENST00000286657	NM_014243.2	517	Aag/Gag	0	
HERC6	55008		GRCh37	4	89363436	89363436	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_103																					ENST00000264346.7:c.2893G>A	p.Glu965Lys	p.E965K	ENST00000264346	NM_017912.3	965	Gaa/Aaa	0	
SLC25A31	83447		GRCh37	4	128685396	128685396	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			brca_smc_2018_BB01_103																					ENST00000281154.4:c.361-2A>G		p.X121_splice	ENST00000281154	NM_031291.2	121		0	
ADCY2	108		GRCh37	5	7707862	7707862	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_103																					ENST00000338316.4:c.1312G>T	p.Ala438Ser	p.A438S	ENST00000338316	NM_020546.2	438	Gct/Tct	0	
DROSHA	29102		GRCh37	5	31526580	31526580	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_103																					ENST00000344624.3:c.460C>T	p.Pro154Ser	p.P154S	ENST00000344624		154	Ccc/Tcc	0	
PDZD2	23037		GRCh37	5	32088870	32088870	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000438447.1:c.5316G>C	p.Leu1772Phe	p.L1772F	ENST00000438447		1772	ttG/ttC	0	
SNX18	112574		GRCh37	5	53813792	53813792	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000326277.3:c.10C>T	p.Arg4Cys	p.R4C	ENST00000326277	NM_052870.2	4	Cgc/Tgc	0	
GPR98			GRCh37	5	90085660	90085660	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000405460.2:c.14035G>C	p.Glu4679Gln	p.E4679Q	ENST00000405460	NM_032119.3	4679	Gag/Cag	0	
KDM3B	51780		GRCh37	5	137713458	137713458	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000314358.5:c.524G>C	p.Arg175Thr	p.R175T	ENST00000314358	NM_016604.3	175	aGa/aCa	0	
PCDHGA8	9708		GRCh37	5	140772489	140772489	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_103																					ENST00000398604.2:c.109G>A	p.Glu37Lys	p.E37K	ENST00000398604	NM_032088.1	37	Gaa/Aaa	0	
RNF14	9604		GRCh37	5	141358342	141358342	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000347642.3:c.781C>G	p.Gln261Glu	p.Q261E	ENST00000347642	NM_183400.2	261	Caa/Gaa	0	
HMGXB3	22993		GRCh37	5	149431417	149431417	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000502717.1:c.3541C>T	p.Pro1181Ser	p.P1181S	ENST00000502717	NM_014983.2	1181	Cct/Tct	0	
FGFR4	2264		GRCh37	5	176519668	176519668	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000292408.4:c.940G>C	p.Glu314Gln	p.E314Q	ENST00000292408	NM_213647.1	314	Gag/Cag	0	
HIST1H1C	3006		GRCh37	6	26056021	26056021	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000343677.2:c.636G>C	p.Lys212Asn	p.K212N	ENST00000343677	NM_005319.3	212	aaG/aaC	0	
ZSCAN9	7746		GRCh37	6	28200456	28200456	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000252207.5:c.685C>T	p.Pro229Ser	p.P229S	ENST00000252207	NM_006299.4	229	Ccc/Tcc	0	
VARS2	57176		GRCh37	6	30884998	30884998	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_103																					ENST00000321897.5:c.870T>G	p.Ile290Met	p.I290M	ENST00000321897		290	atT/atG	0	
BRPF3	27154		GRCh37	6	36196766	36196766	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000357641.6:c.3367G>C	p.Glu1123Gln	p.E1123Q	ENST00000357641	NM_015695.2	1123	Gag/Cag	0	
RUNX2	860		GRCh37	6	45514693	45514693	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000371438.1:c.1217C>T	p.Ser406Leu	p.S406L	ENST00000371438	NM_001024630.3	406	tCa/tTa	0	
PGK2	5232		GRCh37	6	49754836	49754836	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000304801.3:c.65G>C	p.Arg22Thr	p.R22T	ENST00000304801	NM_138733.4	22	aGa/aCa	0	
ZNF451	26036		GRCh37	6	57013278	57013278	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000370706.4:c.2395C>G	p.His799Asp	p.H799D	ENST00000370706	NM_001031623.2	799	Cat/Gat	0	
PTP4A1	7803		GRCh37	6	64286836	64286836	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_103																					ENST00000370651.3:c.51G>T	p.Met17Ile	p.M17I	ENST00000370651	NM_003463.4	17	atG/atT	0	
TUBE1	51175		GRCh37	6	112394003	112394003	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000368662.5:c.1052G>C	p.Arg351Thr	p.R351T	ENST00000368662	NM_016262.4	351	aGa/aCa	0	
PEX7	5191		GRCh37	6	137143806	137143806	+	start_lost	Translation_Start_Site	SNP	G	G	A			brca_smc_2018_BB01_103																					ENST00000318471.4:c.3G>A	p.Met1?	p.M1?	ENST00000318471	NM_000288.3	1	atG/atA	0	
RRS1	23212		GRCh37	8	67341918	67341918	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000320270.2:c.552G>C	p.Lys184Asn	p.K184N	ENST00000320270	NM_015169.3	184	aaG/aaC	0	
C8orf44	56260		GRCh37	8	67592045	67592045	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_103																					ENST00000390159.3:c.336G>T	p.Trp112Cys	p.W112C	ENST00000390159		112	tgG/tgT	0	
EYA1	2138		GRCh37	8	72184090	72184090	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000340726.3:c.869C>G	p.Ser290Ter	p.S290*	ENST00000340726	NM_000503.4	290	tCa/tGa	0	
LY96	23643		GRCh37	8	74917052	74917052	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000284818.2:c.134C>G	p.Ser45Ter	p.S45*	ENST00000284818	NM_015364.4	45	tCa/tGa	0	
PDP1	54704		GRCh37	8	94934333	94934333	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000297598.4:c.46G>C	p.Glu16Gln	p.E16Q	ENST00000297598	NM_018444.3	16	Gaa/Caa	0	
UBR5	51366		GRCh37	8	103282361	103282361	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000520539.1:c.7136C>G	p.Ser2379Cys	p.S2379C	ENST00000520539	NM_015902.5	2379	tCt/tGt	0	
BAALC	79870		GRCh37	8	104225292	104225292	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000297574.6:c.411G>C	p.Gln137His	p.Q137H	ENST00000297574		137	caG/caC	0	
CSMD3	114788		GRCh37	8	113599297	113599297	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_103																					ENST00000297405.5:c.3883A>G	p.Lys1295Glu	p.K1295E	ENST00000297405	NM_198123.1	1295	Aag/Gag	0	
ZNF250	58500		GRCh37	8	146107241	146107241	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000292579.7:c.1342G>A	p.Glu448Lys	p.E448K	ENST00000292579	NM_021061.4	448	Gag/Aag	0	
DDX58	23586		GRCh37	9	32492516	32492516	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_103																					ENST00000379883.2:c.444G>T	p.Met148Ile	p.M148I	ENST00000379883	NM_014314.3	148	atG/atT	0	
FAM120AOS	158293		GRCh37	9	96214946	96214946	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_103																					ENST00000375412.5:c.46G>T	p.Glu16Ter	p.E16*	ENST00000375412	NM_198841.2	16	Gaa/Taa	0	
RNF20	56254		GRCh37	9	104314933	104314933	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000389120.3:c.1799C>T	p.Ser600Leu	p.S600L	ENST00000389120	NM_019592.6	600	tCa/tTa	0	
PTPN3	5774		GRCh37	9	112151660	112151660	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000374541.2:c.2107-1G>A		p.X703_splice	ENST00000374541	NM_001145368.1	703		0	
GSN	2934		GRCh37	9	124093719	124093719	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000373818.4:c.2172G>C	p.Leu724Phe	p.L724F	ENST00000373818	NM_000177.4	724	ttG/ttC	0	
OLFML2A	169611		GRCh37	9	127572193	127572193	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000373580.3:c.1461C>G	p.Ile487Met	p.I487M	ENST00000373580	NM_182487.2	487	atC/atG	0	
NUP188	23511		GRCh37	9	131744950	131744950	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_103																					ENST00000372577.2:c.1639G>T	p.Glu547Ter	p.E547*	ENST00000372577	NM_015354.2	547	Gaa/Taa	0	
ERCC6	2074		GRCh37	10	50678935	50678935	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000355832.5:c.3071G>A	p.Gly1024Glu	p.G1024E	ENST00000355832	NM_000124.3	1024	gGa/gAa	0	
MYPN	84665		GRCh37	10	69961668	69961668	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000358913.5:c.3576G>C	p.Glu1192Asp	p.E1192D	ENST00000358913	NM_032578.3	1192	gaG/gaC	0	
SGPL1	8879		GRCh37	10	72631630	72631630	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_103																					ENST00000373202.3:c.946G>A	p.Ala316Thr	p.A316T	ENST00000373202	NM_003901.3	316	Gct/Act	0	
DDIT4	54541		GRCh37	10	74034029	74034029	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_103																					ENST00000307365.3:c.55T>C	p.Ser19Pro	p.S19P	ENST00000307365	NM_019058.2	19	Tcc/Ccc	0	
KCNMA1	3778		GRCh37	10	79397264	79397264	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_103																					ENST00000286628.8:c.137C>A	p.Ser46Tyr	p.S46Y	ENST00000286628	NM_001161352.1	46	tCt/tAt	0	
GRID1	2894		GRCh37	10	87484214	87484214	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_103																					ENST00000327946.7:c.1753A>G	p.Arg585Gly	p.R585G	ENST00000327946	NM_017551.2	585	Agg/Ggg	0	
KIF20B	9585		GRCh37	10	91488903	91488903	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000371728.3:c.2290C>T	p.Gln764Ter	p.Q764*	ENST00000371728	NM_001284259.1	764	Caa/Taa	0	
BTAF1	9044		GRCh37	10	93778679	93778679	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000265990.6:c.4850C>T	p.Ser1617Leu	p.S1617L	ENST00000265990	NM_003972.2	1617	tCa/tTa	0	
KIF11	3832		GRCh37	10	94368834	94368834	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000260731.3:c.445G>C	p.Asp149His	p.D149H	ENST00000260731	NM_004523.3	149	Gat/Cat	0	
ANKRD2	26287		GRCh37	10	99337614	99337614	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_103																					ENST00000307518.5:c.226G>A	p.Glu76Lys	p.E76K	ENST00000307518		76	Gag/Aag	0	
OR10A4	283297		GRCh37	11	6898415	6898415	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000379829.2:c.537C>G	p.Phe179Leu	p.F179L	ENST00000379829	NM_207186.2	179	ttC/ttG	0	
NLRP10	338322		GRCh37	11	7984928	7984928	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000328600.2:c.115G>A	p.Glu39Lys	p.E39K	ENST00000328600	NM_176821.3	39	Gag/Aag	0	
STK33	65975		GRCh37	11	8483446	8483446	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000315204.1:c.464C>G	p.Ser155Cys	p.S155C	ENST00000315204	NM_030906.2	155	tCt/tGt	0	
SLC6A5	9152		GRCh37	11	20673973	20673973	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_103																					ENST00000525748.1:c.2209A>G	p.Met737Val	p.M737V	ENST00000525748	NM_004211.3	737	Atg/Gtg	0	
RCN1	5954		GRCh37	11	32120042	32120042	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000054950.3:c.595G>C	p.Glu199Gln	p.E199Q	ENST00000054950	NM_002901.2	199	Gag/Cag	0	
FBXO3	26273		GRCh37	11	33795953	33795953	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000265651.3:c.91C>G	p.Arg31Gly	p.R31G	ENST00000265651	NM_012175.3	31	Cgg/Ggg	0	
OR1S1	219959		GRCh37	11	57982652	57982652	+	missense_variant	Missense_Mutation	SNP	A	A	G			brca_smc_2018_BB01_103																					ENST00000309433.6:c.436A>G	p.Thr146Ala	p.T146A	ENST00000309433	NM_001004458.1	146	Aca/Gca	0	
CCS	9973		GRCh37	11	66372865	66372865	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000533244.1:c.545G>C	p.Arg182Thr	p.R182T	ENST00000533244	NM_005125.1	182	aGa/aCa	0	
INTS4	92105		GRCh37	11	77692609	77692609	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_103																					ENST00000534064.1:c.260C>T	p.Ser87Phe	p.S87F	ENST00000534064	NM_033547.3	87	tCt/tTt	0	
TENM4	26011		GRCh37	11	78387241	78387241	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000278550.7:c.5452G>C	p.Glu1818Gln	p.E1818Q	ENST00000278550	NM_001098816.2	1818	Gag/Cag	0	
HOXC10	3226		GRCh37	12	54379777	54379777	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000303460.4:c.734C>G	p.Ser245Trp	p.S245W	ENST00000303460	NM_017409.3	245	tCg/tGg	0	
HOXC9	3225		GRCh37	12	54396331	54396331	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_103																					ENST00000303450.4:c.656G>A	p.Arg219Lys	p.R219K	ENST00000303450	NM_006897.1	219	aGg/aAg	0	
ZBTB39	9880		GRCh37	12	57397486	57397486	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000300101.2:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000300101	NM_014830.2	406	Gaa/Aaa	0	
LEMD3	23592		GRCh37	12	65564428	65564428	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000308330.2:c.1052C>G	p.Ser351Cys	p.S351C	ENST00000308330	NM_014319.4	351	tCc/tGc	0	
CIT	11113		GRCh37	12	120210596	120210596	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000261833.7:c.2060G>A	p.Arg687Lys	p.R687K	ENST00000261833	NM_007174.2	687	aGa/aAa	0	
ZNF84	7637		GRCh37	12	133633647	133633647	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000327668.7:c.346C>G	p.Leu116Val	p.L116V	ENST00000327668		116	Ctg/Gtg	0	
BRCA2	675		GRCh37	13	32907090	32907090	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000380152.3:c.1475C>T	p.Ser492Phe	p.S492F	ENST00000380152		492	tCt/tTt	0	
UGGT2	55757		GRCh37	13	96511923	96511923	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000376747.3:c.3747G>C	p.Met1249Ile	p.M1249I	ENST00000376747	NM_020121.3	1249	atG/atC	0	
SALL2	6297		GRCh37	14	21993068	21993068	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_103																					ENST00000327430.3:c.794C>T	p.Ser265Leu	p.S265L	ENST00000327430	NM_005407.1	265	tCa/tTa	0	
OR10G3	26533		GRCh37	14	22038849	22038849	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000303532.1:c.27G>C	p.Leu9Phe	p.L9F	ENST00000303532	NM_001005465.1	9	ttG/ttC	0	
TRAV22	28661		GRCh37	14	22539218	22539218	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000390450.3:c.78G>C	p.Gln26His	p.Q26H	ENST00000390450		26	caG/caC	0	
KLHDC2	23588		GRCh37	14	50235284	50235284	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000298307.5:c.98G>C	p.Ser33Thr	p.S33T	ENST00000298307	NM_014315.2	33	aGc/aCc	0	
IRF2BPL	64207		GRCh37	14	77492220	77492220	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_103																					ENST00000238647.3:c.1916C>T	p.Ser639Leu	p.S639L	ENST00000238647	NM_024496.3	639	tCg/tTg	0	
RPAP1	26015		GRCh37	15	41826974	41826974	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000304330.4:c.701G>A	p.Arg234Lys	p.R234K	ENST00000304330	NM_015540.2	234	aGa/aAa	0	
TMEM87A	25963		GRCh37	15	42523453	42523453	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000389834.4:c.1068G>C	p.Gln356His	p.Q356H	ENST00000389834	NM_015497.3	356	caG/caC	0	
STARD9	57519		GRCh37	15	42983660	42983660	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000290607.7:c.9884G>C	p.Arg3295Thr	p.R3295T	ENST00000290607	NM_020759.2	3295	aGa/aCa	0	
MYO5A	4644		GRCh37	15	52605935	52605935	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000399231.3:c.5526G>C	p.Gln1842His	p.Q1842H	ENST00000399231	NM_000259.3	1842	caG/caC	0	
FOXB1	27023		GRCh37	15	60297728	60297728	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000396057.4:c.566C>G	p.Ser189Cys	p.S189C	ENST00000396057	NM_012182.2	189	tCc/tGc	0	
VPS13C	54832		GRCh37	15	62242607	62242607	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000261517.5:c.4546G>C	p.Asp1516His	p.D1516H	ENST00000261517	NM_020821.2	1516	Gat/Cat	0	
TFAP4	7023		GRCh37	16	4310189	4310189	+	missense_variant	Missense_Mutation	SNP	G	G	A			brca_smc_2018_BB01_103																					ENST00000204517.6:c.724C>T	p.Pro242Ser	p.P242S	ENST00000204517	NM_003223.2	242	Cct/Tct	0	
CDH1	999		GRCh37	16	68842752	68842752	+	splice_donor_variant	Splice_Site	SNP	G	G	A			brca_smc_2018_BB01_103																					ENST00000261769.5:c.687+1G>A		p.X229_splice	ENST00000261769	NM_004360.3	229		0	
HYDIN	54768		GRCh37	16	70942561	70942561	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000393567.2:c.8208C>G	p.Phe2736Leu	p.F2736L	ENST00000393567	NM_001270974.1	2736	ttC/ttG	0	
CHMP1A	5119		GRCh37	16	89718018	89718018	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_103																					ENST00000397901.3:c.64G>T	p.Ala22Ser	p.A22S	ENST00000397901	NM_002768.4	22	Gcg/Tcg	0	
RP11-368I7.4			GRCh37	16	89751935	89751935	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_103																					ENST00000567544.1:c.110C>A	p.Ala37Glu	p.A37E	ENST00000567544		37	gCg/gAg	0	
MYH8	4626		GRCh37	17	10317594	10317594	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000403437.2:c.923C>G	p.Thr308Ser	p.T308S	ENST00000403437	NM_002472.2	308	aCc/aGc	0	
CDRT4	284040		GRCh37	17	15341416	15341416	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000312177.6:c.130G>A	p.Glu44Lys	p.E44K	ENST00000312177	NM_001204477.1	44	Gag/Aag	0	
FLII	2314		GRCh37	17	18150081	18150081	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000327031.4:c.2878G>A	p.Glu960Lys	p.E960K	ENST00000327031	NM_002018.3	960	Gag/Aag	0	
NF1	4763		GRCh37	17	29654634	29654634	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_103																					ENST00000358273.4:c.5386G>T	p.Glu1796Ter	p.E1796*	ENST00000358273	NM_001042492.2	1796	Gag/Tag	0	
MED1	5469		GRCh37	17	37564497	37564497	+	missense_variant	Missense_Mutation	SNP	T	T	A			brca_smc_2018_BB01_103																					ENST00000300651.6:c.3977A>T	p.Asp1326Val	p.D1326V	ENST00000300651	NM_004774.3	1326	gAc/gTc	0	
ERBB2	2064		GRCh37	17	37879885	37879885	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000269571.5:c.2180G>C	p.Gly727Ala	p.G727A	ENST00000269571		727	gGa/gCa	0	
KRT9	3857		GRCh37	17	39727736	39727736	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_103																					ENST00000246662.4:c.509A>C	p.Lys170Thr	p.K170T	ENST00000246662	NM_000226.3	170	aAg/aCg	0	
MPP2	4355		GRCh37	17	41959861	41959861	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000461854.1:c.544G>C	p.Glu182Gln	p.E182Q	ENST00000461854	NM_001278372.1	182	Gag/Cag	0	
KIAA0195			GRCh37	17	73494389	73494389	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000314256.7:c.3623C>T	p.Ser1208Phe	p.S1208F	ENST00000314256	NM_014738.4	1208	tCc/tTc	0	
EVPL	2125		GRCh37	17	74006272	74006272	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000301607.3:c.3014G>C	p.Ser1005Thr	p.S1005T	ENST00000301607	NM_001988.2	1005	aGc/aCc	0	
GAA	2548		GRCh37	17	78078670	78078670	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000302262.3:c.285C>G	p.Asp95Glu	p.D95E	ENST00000302262	NM_000152.3	95	gaC/gaG	0	
DSG4	147409		GRCh37	18	28970781	28970781	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000308128.4:c.680G>C	p.Arg227Thr	p.R227T	ENST00000308128	NM_177986.3	227	aGa/aCa	0	
SERPINB11	89778		GRCh37	18	61390437	61390437	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_103																					ENST00000544088.1:c.983T>C	p.Leu328Ser	p.L328S	ENST00000544088	NM_080475.2	328	tTa/tCa	0	
NFATC1	4772		GRCh37	18	77170623	77170623	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000427363.2:c.348G>C	p.Glu116Asp	p.E116D	ENST00000427363		116	gaG/gaC	0	
OR1M1	125963		GRCh37	19	9203999	9203999	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000429566.3:c.79C>T	p.Leu27Phe	p.L27F	ENST00000429566	NM_001004456.1	27	Ctc/Ttc	0	
PRKCSH	5589		GRCh37	19	11552086	11552086	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000589838.1:c.382C>T	p.Gln128Ter	p.Q128*	ENST00000589838		128	Cag/Tag	0	
ELL	8178		GRCh37	19	18576222	18576222	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_103																					ENST00000262809.4:c.469G>T	p.Gly157Cys	p.G157C	ENST00000262809	NM_006532.3	157	Ggc/Tgc	0	
TGFB1	7040		GRCh37	19	41854362	41854362	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			brca_smc_2018_BB01_103																					ENST00000221930.5:c.356-2A>G		p.X119_splice	ENST00000221930	NM_000660.4	119		0	
IRF2BP1	26145		GRCh37	19	46387310	46387310	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000302165.3:c.1723G>C	p.Asp575His	p.D575H	ENST00000302165	NM_015649.1	575	Gac/Cac	0	
PANK2	80025		GRCh37	20	3869826	3869826	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000316562.4:c.79C>G	p.Leu27Val	p.L27V	ENST00000316562	NM_153638.2	27	Ctc/Gtc	0	
RIN2	54453		GRCh37	20	19955786	19955786	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_103																					ENST00000255006.6:c.1264G>T	p.Gly422Cys	p.G422C	ENST00000255006	NM_018993.3	422	Ggt/Tgt	0	
PLCG1	5335		GRCh37	20	39800885	39800885	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000373271.1:c.2861C>G	p.Ser954Cys	p.S954C	ENST00000373271	NM_182811.1	954	tCt/tGt	0	
ZMYND8	23613		GRCh37	20	45839435	45839435	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000311275.7:c.3532G>C	p.Glu1178Gln	p.E1178Q	ENST00000311275	NM_001281783.1	1178	Gag/Cag	0	
CYP24A1	1591		GRCh37	20	52789493	52789493	+	missense_variant	Missense_Mutation	SNP	T	T	G			brca_smc_2018_BB01_103																					ENST00000216862.3:c.404A>C	p.Lys135Thr	p.K135T	ENST00000216862	NM_000782.4	135	aAg/aCg	0	
DYRK1A	1859		GRCh37	21	38868492	38868492	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_103																					ENST00000398960.2:c.1171G>T	p.Ala391Ser	p.A391S	ENST00000398960	NM_001396.3	391	Gca/Tca	0	
ICOSLG	23308		GRCh37	21	45656808	45656808	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000407780.3:c.348G>C	p.Leu116Phe	p.L116F	ENST00000407780	NM_001283052.1	116	ttG/ttC	0	
TYMP	1890		GRCh37	22	50968116	50968116	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000252029.3:c.23G>A	p.Gly8Glu	p.G8E	ENST00000252029	NM_001953.4	8	gGa/gAa	0	
SYCE3	644186		GRCh37	22	50994828	50994828	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000402753.1:c.7G>A	p.Asp3Asn	p.D3N	ENST00000402753		3	Gat/Aat	0	
ARSF	416		GRCh37	X	3002451	3002451	+	missense_variant	Missense_Mutation	SNP	T	T	C			brca_smc_2018_BB01_103																					ENST00000359361.2:c.574T>C	p.Cys192Arg	p.C192R	ENST00000359361	NM_004042.4	192	Tgt/Cgt	0	
ATXN3L	92552		GRCh37	X	13337639	13337639	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_103																					ENST00000380622.2:c.415G>T	p.Gly139Cys	p.G139C	ENST00000380622	NM_001135995.1	139	Ggt/Tgt	0	
CXorf30			GRCh37	X	36337394	36337394	+	missense_variant	Missense_Mutation	SNP	C	C	A			brca_smc_2018_BB01_103																					ENST00000378657.4:c.753C>A	p.Phe251Leu	p.F251L	ENST00000378657	NM_001098843.4	251	ttC/ttA	0	
USP9X	8239		GRCh37	X	41091724	41091724	+	missense_variant	Missense_Mutation	SNP	G	G	C			brca_smc_2018_BB01_103																					ENST00000324545.8:c.7660G>C	p.Glu2554Gln	p.E2554Q	ENST00000324545	NM_001039590.2	2554	Gaa/Caa	0	
ZNF630	57232		GRCh37	X	47918227	47918227	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000409324.3:c.1604G>C	p.Arg535Thr	p.R535T	ENST00000409324	NM_001037735.2	535	aGa/aCa	0	
WNK3	65267		GRCh37	X	54285710	54285710	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000354646.2:c.2099G>A	p.Arg700Gln	p.R700Q	ENST00000354646	NM_020922.4	700	cGa/cAa	0	
LAS1L	81887		GRCh37	X	64749585	64749585	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_103																					ENST00000374811.3:c.688C>A	p.Gln230Lys	p.Q230K	ENST00000374811	NM_031206.4	230	Cag/Aag	0	
STARD8	9754		GRCh37	X	67937467	67937467	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_103																					ENST00000252336.6:c.471G>T	p.Glu157Asp	p.E157D	ENST00000252336	NM_014725.4	157	gaG/gaT	0	
SLC16A2	6567		GRCh37	X	73751335	73751335	+	missense_variant	Missense_Mutation	SNP	G	G	T			brca_smc_2018_BB01_103																					ENST00000587091.1:c.1567G>T	p.Asp523Tyr	p.D523Y	ENST00000587091	NM_006517.4	523	Gac/Tac	0	
ATRX	546		GRCh37	X	76889071	76889071	+	missense_variant	Missense_Mutation	SNP	C	C	G			brca_smc_2018_BB01_103																					ENST00000373344.5:c.4939G>C	p.Asp1647His	p.D1647H	ENST00000373344	NM_000489.3	1647	Gat/Cat	0	
SEPT6	23157		GRCh37	X	118786835	118786835	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000343984.5:c.510G>A	p.Met170Ile	p.M170I	ENST00000343984	NM_015129.5	170	atG/atA	0	
UBL4A	8266		GRCh37	X	153714570	153714570	+	missense_variant	Missense_Mutation	SNP	C	C	T			brca_smc_2018_BB01_103																					ENST00000369660.4:c.151G>A	p.Ala51Thr	p.A51T	ENST00000369660	NM_014235.3	51	Gca/Aca	0	
PPP2R2A	5520		GRCh37	8	26218603	26218604	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			brca_smc_2018_BB01_108																					ENST00000380737.3:c.575_576del	p.Tyr192PhefsTer5	p.Y192Ffs*5	ENST00000380737	NM_002717.3	191	acATat/acat	0	
GATA3	2625		GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BB01_108																					ENST00000346208.3:c.1220dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcCg	0	
MAML3	55534		GRCh37	4	140811082	140811083	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TGT			brca_smc_2018_BR469																					ENST00000509479.2:c.1508_1509insCAA	p.Gln503delinsHisLys	p.Q503delinsHK	ENST00000509479	NM_018717.4	503	cag/cACAag	0	
MAP3K1	4214		GRCh37	5	56155621	56155622	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BR469																					ENST00000399503.3:c.713dup	p.Ser239LysfsTer62	p.S239Kfs*62	ENST00000399503	NM_005921.1	238	gca/gcCa	0	
KCNH8	131096		GRCh37	3	19384178	19384180	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			brca_smc_2018_BB01_124																					ENST00000328405.2:c.542_544del	p.Arg181_Glu182delinsLys	p.R181_E182delinsK	ENST00000328405	NM_144633.2	181	aGAGaa/aaa	0	
TTC33	23548		GRCh37	5	40716536	40716538	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			brca_smc_2018_BB01_124																					ENST00000337702.4:c.498_500del	p.Glu166del	p.E166del	ENST00000337702	NM_012382.2	166	gaAGAc/gac	0	
CLIP2	7461		GRCh37	7	73771771	73771771	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BB01_124																					ENST00000223398.6:c.1179del	p.Lys394ArgfsTer98	p.K394Rfs*98	ENST00000223398	NM_003388.4	393	gaG/ga	0	
SCARF2	91179		GRCh37	22	20791941	20791942	+	protein_altering_variant	In_Frame_Ins	INS	-	-	AGC			brca_smc_2018_BB01_124																					ENST00000266214.5:c.100_101insGCT	p.Leu34delinsArgPhe	p.L34delinsRF	ENST00000266214	NM_153334.4	34	ctc/cGCTtc	0	
CAD	790		GRCh37	2	27459278	27459278	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BB01_088																					ENST00000264705.4:c.4205del	p.Gly1402AlafsTer25	p.G1402Afs*25	ENST00000264705	NM_004341.3	1401	Ggg/gg	0	
LSM5	23658		GRCh37	7	32527322	32527323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BB01_088																					ENST00000450169.2:c.218dup	p.Leu73PhefsTer6	p.L73Ffs*6	ENST00000450169	NM_012322.2	73	ttg/tTtg	0	
ZNF764	92595		GRCh37	16	30566989	30566990	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGCAGGTGCGAAGTCA			brca_smc_2018_BB01_088																					ENST00000252797.2:c.752_753insTGACTTCGCACCTGCGC	p.Val252AspfsTer137	p.V252Dfs*137	ENST00000252797	NM_033410.3	251	cgc/cgTGACTTCGCACCTGCGCc	0	
ZBTB48	3104		GRCh37	1	6646029	6646030	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			brca_smc_2018_BR255																					ENST00000377674.4:c.983dup	p.Tyr328Ter	p.Y328*	ENST00000377674	NM_001278648.1	328	tac/taAc	0	
SLC27A3	11000		GRCh37	1	153749170	153749171	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR255																					ENST00000368661.3:c.985dup	p.Thr329AsnfsTer114	p.T329Nfs*114	ENST00000368661	NM_024330.1	329	acg/aAcg	0	
FMO6P	388714		GRCh37	1	171116822	171116822	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BR255																					ENST00000236166.3:c.543del	p.Phe182SerfsTer8	p.F182Sfs*8	ENST00000236166		181	gCc/gc	0	
DNAH14	127602		GRCh37	1	225284866	225284866	+	intron_variant	Intron	DEL	C	C	-			brca_smc_2018_BR255																					ENST00000445597.2:c.3051+11377del		p.*1017*	ENST00000445597				0	
CDKL4	344387		GRCh37	2	39414802	39414803	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			brca_smc_2018_BR255																					ENST00000395035.3:c.700_701dup	p.His235SerfsTer27	p.H235Sfs*27	ENST00000395035		234	ttc/tTTtc	0	
NEB	4703		GRCh37	2	152539242	152539244	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			brca_smc_2018_BR255																					ENST00000172853.10:c.2875_2877del	p.Cys959del	p.C959del	ENST00000172853		959	TGT/-	0	
FAM171B	165215		GRCh37	2	187559048	187559049	+	protein_altering_variant	In_Frame_Ins	INS	-	-	CAA			brca_smc_2018_BR255																					ENST00000304698.5:c.148_149insCAA	p.Gln50delinsProLys	p.Q50delinsPK	ENST00000304698	NM_177454.3	50	caa/cCAAaa	0	
VIPR1	7433		GRCh37	3	42572313	42572314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR255																					ENST00000325123.4:c.679dup	p.Met227AsnfsTer3	p.M227Nfs*3	ENST00000325123	NM_001251885.1	227	atg/aAtg	0	
PSAPL1	768239		GRCh37	4	7435205	7435205	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BR255																					ENST00000319098.4:c.1402del	p.Ala468ProfsTer65	p.A468Pfs*65	ENST00000319098	NM_001085382.1	468	Gcc/cc	0	
MAML3	55534		GRCh37	4	140811082	140811083	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TGT			brca_smc_2018_BR255																					ENST00000509479.2:c.1508_1509insCAA	p.Gln503delinsHisLys	p.Q503delinsHK	ENST00000509479	NM_018717.4	503	cag/cACAag	0	
FCHSD1	89848		GRCh37	5	141022633	141022635	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			brca_smc_2018_BR255																					ENST00000435817.2:c.1884_1886del	p.Pro629del	p.P629del	ENST00000435817	NM_033449.2	628	ccTCCc/ccc	0	
HCG27	253018		GRCh37	6	31165598	31165598	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BR255																					ENST00000383331.4:c.62del	p.Arg22AlafsTer50	p.R22Afs*50	ENST00000383331		21	gaT/ga	0	
VWDE	221806		GRCh37	7	12391269	12391270	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR255																					ENST00000275358.3:c.3816dup	p.Lys1273Ter	p.K1273*	ENST00000275358	NM_001135924.1	1272	aat/aaTt	0	
ZNF703	80139		GRCh37	8	37555934	37555935	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGC			brca_smc_2018_BR255																					ENST00000331569.4:c.1515_1516insCGC	p.Ser505_Ala506insArg	p.S505_A506insR	ENST00000331569	NM_025069.1	505	-/CGC	0	
RP11-383H13.1			GRCh37	8	72755648	72755649	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BR255																					ENST00000537896.1:c.12dup	p.Gly5TrpfsTer15	p.G5Wfs*15	ENST00000537896		4	-/T	0	
PHF2	5253		GRCh37	9	96439005	96439006	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCTGCCTCCACCACA			brca_smc_2018_BR255																					ENST00000359246.4:c.2963_2964insCTGCCTCCACCACAC	p.Pro988_Ala989insCysLeuHisHisThr	p.P988_A989insCLHHT	ENST00000359246	NM_005392.3	988	ccg/cCCTGCCTCCACCACAcg	0	
OR1B1	347169		GRCh37	9	125391771	125391772	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR255																					ENST00000304833.3:c.44dup	p.Leu15PhefsTer9	p.L15Ffs*9	ENST00000304833	NM_001004450.1	15	ttg/tTtg	0	
TMEM210	100505993		GRCh37	9	140066128	140066130	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			brca_smc_2018_BR255																					ENST00000413619.2:c.187_189del	p.Leu63del	p.L63del	ENST00000413619	NM_001282477.1	63	CTC/-	0	
SEC31B	25956		GRCh37	10	102257924	102257924	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BR255																					ENST00000370345.3:c.1725del	p.Glu575AspfsTer10	p.E575Dfs*10	ENST00000370345	NM_015490.3	575	gaA/ga	0	
GDPD4	220032		GRCh37	11	76954789	76954790	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR255																					ENST00000376217.2:c.1191dup	p.Ile398TyrfsTer7	p.I398Yfs*7	ENST00000376217		397	aat/aaTt	0	
CCDC42B			GRCh37	12	113592307	113592308	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BR255																					ENST00000335621.6:c.557dup	p.Glu187GlyfsTer116	p.E187Gfs*116	ENST00000335621	NM_001144872.1	186	gcg/gcCg	0	
EP400	57634		GRCh37	12	132547094	132547095	+	protein_altering_variant	In_Frame_Ins	INS	-	-	CAG			brca_smc_2018_BR255																					ENST00000389561.2:c.8182_8183insCAG	p.Gln2728delinsProGlu	p.Q2728delinsPE	ENST00000389561	NM_015409.4	2728	cag/cCAGag	0	
IL25	64806		GRCh37	14	23845046	23845046	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BR255																					ENST00000329715.2:c.493del	p.Ser165ProfsTer2	p.S165Pfs*2	ENST00000329715	NM_022789.3	164	gTt/gt	0	
CENPV	201161		GRCh37	17	16256687	16256688	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGGAGGCCC			brca_smc_2018_BR255																					ENST00000299736.4:c.64_65insGGCCTCCGG	p.Ser21_Ala22insGlyProPro	p.S21_A22insGPP	ENST00000299736	NM_181716.2	21	-/GGGCCTCCG	0	
USP36	57602		GRCh37	17	76798549	76798554	+	inframe_deletion	In_Frame_Del	DEL	TTTTTC	TTTTTC	-			brca_smc_2018_BR255																					ENST00000542802.3:c.2874_2879del	p.Lys959_Lys960del	p.K959_K960del	ENST00000542802		958	aaGAAAAAa/aaa	0	
KCNG2	26251		GRCh37	18	77623692	77623693	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGC			brca_smc_2018_BR255																					ENST00000316249.3:c.26_27insGCG	p.Gly9_Gly10insArg	p.G9_G10insR	ENST00000316249	NM_012283.1	9	ggc/gGGCgc	0	
TRIP10	9322		GRCh37	19	6746569	6746570	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR255																					ENST00000313244.9:c.1259dup	p.Arg421GlufsTer12	p.R421Efs*12	ENST00000313244		420	cag/caAg	0	
DHDH	27294		GRCh37	19	49442850	49442851	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			brca_smc_2018_BR255																					ENST00000221403.2:c.517dup	p.Ala173GlyfsTer33	p.A173Gfs*33	ENST00000221403	NM_014475.3	171	ggg/gGgg	0	
ALDH16A1	126133		GRCh37	19	49972165	49972167	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			brca_smc_2018_BR255																					ENST00000293350.4:c.2171_2173del	p.Gly724del	p.G724del	ENST00000293350	NM_153329.3	723	acAGGa/aca	0	
CTU1	90353		GRCh37	19	51602248	51602250	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			brca_smc_2018_BR255																					ENST00000421832.2:c.655_657del	p.Lys219del	p.K219del	ENST00000421832	NM_145232.3	219	AAG/-	0	
SIGLEC12	89858		GRCh37	19	52004792	52004793	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BR255																					ENST00000291707.3:c.196dup	p.Ala66GlyfsTer50	p.A66Gfs*50	ENST00000291707	NM_053003.2	65	-/G	0	
RALY	22913		GRCh37	20	32664865	32664866	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAG			brca_smc_2018_BR255																					ENST00000246194.3:c.690_691insCAG	p.Ala230_Gly231insGln	p.A230_G231insQ	ENST00000246194	NM_016732.2	230	-/CAG	0	
NCOA3	8202		GRCh37	20	46279861	46279862	+	protein_altering_variant	In_Frame_Ins	INS	-	-	CAA			brca_smc_2018_BR255																					ENST00000371998.3:c.3787_3788insCAA	p.Gln1263delinsProLys	p.Q1263delinsPK	ENST00000371998		1263	cag/cCAAag	0	
CLK1	1195		GRCh37	2	201725973	201725984	+	inframe_deletion	In_Frame_Del	DEL	ACGATGTGAAGT	ACGATGTGAAGT	-			brca_smc_2018_BB01_061																					ENST00000321356.4:c.367_378del	p.Thr123_Arg126del	p.T123_R126del	ENST00000321356	NM_004071.3	123	ACTTCACATCGT/-	0	
PCTP	58488		GRCh37	17	53853452	53853452	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BB01_061																					ENST00000268896.5:c.636del	p.Thr214ProfsTer63	p.T214Pfs*63	ENST00000268896	NM_021213.3	212	aaG/aa	0	
ITPR2	3709		GRCh37	12	26848543	26848544	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BB01_026																					ENST00000381340.3:c.992dup	p.Asn331LysfsTer32	p.N331Kfs*32	ENST00000381340	NM_002223.2	331	aat/aAat	0	
LAMA1	284217		GRCh37	18	7032157	7032158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BB01_026																					ENST00000389658.3:c.2182dup	p.Tyr728LeufsTer16	p.Y728Lfs*16	ENST00000389658	NM_005559.3	727	-/T	0	
POP1	10940		GRCh37	8	99168468	99168469	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BB01_055																					ENST00000349693.3:c.2254dup	p.Thr752AsnfsTer6	p.T752Nfs*6	ENST00000349693	NM_015029.2	750	aaa/aAaa	0	
GATA3	2625		GRCh37	10	8115917	8115918	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			brca_smc_2018_BB01_055																					ENST00000346208.3:c.1263dup	p.Met422AspfsTer85	p.M422Dfs*85	ENST00000346208		421	-/G	0	
TUBA1A	7846		GRCh37	12	49578807	49578809	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			brca_smc_2018_BB01_055																					ENST00000295766.5:c.1340_1342del	p.Glu447del	p.E447del	ENST00000295766	NM_001270399.1	447	gAAGga/gga	0	
NCOR1	9611		GRCh37	17	15952301	15952302	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	TACT			brca_smc_2018_BB01_055																					ENST00000268712.3:c.6395_6396insTAAG	p.Arg2132SerfsTer30	p.R2132Sfs*30	ENST00000268712	NM_006311.3	2131	-/AGTA	0	
HTT	3064		GRCh37	4	3076667	3076668	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCGCCACCG			brca_smc_2018_BB01_116																					ENST00000355072.5:c.116_117insCGCCACCGC	p.Pro39_Pro40insAlaThrAla	p.P39_P40insATA	ENST00000355072	NM_002111.6	39	ccg/cCCGCCACCGcg	0	
FKBP4	2288		GRCh37	12	2910508	2910510	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			brca_smc_2018_BB01_116																					ENST00000001008.4:c.1264_1266del	p.Glu422del	p.E422del	ENST00000001008	NM_002014.3	420	GAG/-	0	
NEFH	4744		GRCh37	22	29885568	29885569	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	AAGTCCCCTGAGAAGGCC			brca_smc_2018_BB01_116																					ENST00000310624.6:c.1940_1941insAGTCCCCTGAGAAGGCCA	p.Lys647_Ser648insValProTer	p.K647_S648insVP*	ENST00000310624	NM_021076.3	647	aag/aAAGTCCCCTGAGAAGGCCag	0	
TCHH	7062		GRCh37	1	152084658	152084659	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTC			brca_smc_2018_BR371																					ENST00000368804.1:c.1036_1038dup	p.Arg347dup	p.R347dup	ENST00000368804	NM_007113.3	347	gag/gaGAGg	0	
RREB1	6239		GRCh37	6	7229646	7229647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTG			brca_smc_2018_BR371																					ENST00000349384.6:c.1315_1316insCTGC	p.Leu439ProfsTer14	p.L439Pfs*14	ENST00000349384	NM_001003698.3	438	-/CCTG	0	
ATXN1	6310		GRCh37	6	16327865	16327866	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TGC			brca_smc_2018_BR371																					ENST00000244769.4:c.676_677insGCA	p.His226delinsArgAsn	p.H226delinsRN	ENST00000244769	NM_000332.3	226	cac/cGCAac	0	
MAP3K1	4214		GRCh37	5	56177984	56177986	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			brca_smc_2018_BR235																					ENST00000399503.3:c.2965_2967del	p.Ser989del	p.S989del	ENST00000399503	NM_005921.1	986	cCTTct/cct	0	
GATA3	2625		GRCh37	10	8115854	8115855	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			brca_smc_2018_BR235																					ENST00000346208.3:c.1200dup	p.Ser401ValfsTer106	p.S401Vfs*106	ENST00000346208		400	-/G	0	
ARL8A	127829		GRCh37	1	202104298	202104298	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BB01_090																					ENST00000272217.2:c.491del	p.Cys164SerfsTer76	p.C164Sfs*76	ENST00000272217	NM_001256129.1	164	tGc/tc	0	
TTC30B	150737		GRCh37	2	178417175	178417177	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			brca_smc_2018_BB01_090																					ENST00000408939.3:c.315_317del	p.Leu106del	p.L106del	ENST00000408939	NM_152517.2	105	ctCCTg/ctg	0	
ANKRD29	147463		GRCh37	18	21199545	21199545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BB01_090																					ENST00000592179.1:c.577del	p.Val193TrpfsTer4	p.V193Wfs*4	ENST00000592179	NM_173505.2	193	Gtg/tg	0	
TCHHL1	126637		GRCh37	1	152060485	152060485	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BR418																					ENST00000368806.1:c.135del	p.Gln46SerfsTer15	p.Q46Sfs*15	ENST00000368806	NM_001008536.1	45	ttT/tt	0	
KCNG2	26251		GRCh37	18	77623692	77623693	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGC			brca_smc_2018_BR313																					ENST00000316249.3:c.26_27insGCG	p.Gly9_Gly10insArg	p.G9_G10insR	ENST00000316249	NM_012283.1	9	ggc/gGGCgc	0	
TCHH	7062		GRCh37	1	152084658	152084659	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTC			brca_smc_2018_BR442																					ENST00000368804.1:c.1036_1038dup	p.Arg347dup	p.R347dup	ENST00000368804	NM_007113.3	347	gag/gaGAGg	0	
UNC5C	8633		GRCh37	4	96199506	96199506	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BR442																					ENST00000453304.1:c.498del	p.Lys167ArgfsTer8	p.K167Rfs*8	ENST00000453304	NM_003728.3	166	cgG/cg	0	
ARHGEF28	64283		GRCh37	5	73045692	73045692	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BR442																					ENST00000426542.2:c.68del	p.Asn23MetfsTer23	p.N23Mfs*23	ENST00000426542		22	Aaa/aa	0	
PRRC2A	7916		GRCh37	6	31591524	31591527	+	frameshift_variant	Frame_Shift_Del	DEL	GCCT	GCCT	-			brca_smc_2018_BR442																					ENST00000376007.4:c.130_133del	p.Leu44ArgfsTer21	p.L44Rfs*21	ENST00000376007	NM_080686.2	43	gGCCTg/gg	0	
RB1	5925		GRCh37	13	49030322	49030353	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCTTTAAATATATCTAGGTATCTTTCTCCTG	TCCTTTAAATATATCTAGGTATCTTTCTCCTG	-			brca_smc_2018_BB01_119																					ENST00000267163.4:c.1815-17_1829del		p.X605_splice	ENST00000267163	NM_000321.2	605		0	
SYNE2	23224		GRCh37	14	64491030	64491031	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAA			brca_smc_2018_BR383																					ENST00000344113.4:c.5693_5694insTGAA	p.Lys1899GlufsTer42	p.K1899Efs*42	ENST00000344113	NM_015180.4	1898	ctg/ctTGAAg	0	
POLR1A	25885		GRCh37	2	86325884	86325885	+	splice_acceptor_variant	Splice_Site	INS	-	-	AA			brca_smc_2018_BB01_105																					ENST00000263857.6:c.283-2_283-1insTT		p.X95_splice	ENST00000263857		95		0	
GATA3	2625		GRCh37	10	8115734	8115735	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATC			brca_smc_2018_BB01_105																					ENST00000346208.3:c.1080_1081insCATC	p.Ile361HisfsTer11	p.I361Hfs*11	ENST00000346208		360	-/CATC	0	
TLE2	7089		GRCh37	19	3013796	3013796	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BB01_105																					ENST00000262953.6:c.744del	p.Ser249AlafsTer43	p.S249Afs*43	ENST00000262953	NM_003260.4	248	ccC/cc	0	
EPS8L1	54869		GRCh37	19	55593226	55593226	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BB01_105																					ENST00000201647.6:c.860del	p.His287ProfsTer18	p.H287Pfs*18	ENST00000201647	NM_133180.2	287	cAc/cc	0	
CCDC38	120935		GRCh37	12	96272087	96272088	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BR431																					ENST00000344280.3:c.1180dup	p.Met394AsnfsTer3	p.M394Nfs*3	ENST00000344280	NM_182496.2	393	-/A	0	
KRTAP4-5	85289		GRCh37	17	39305780	39305781	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCAGCTGGGGCGGCA			brca_smc_2018_BR431																					ENST00000343246.4:c.239_240insTGCCGCCCCAGCTGC	p.Cys80_Cys81insAlaAlaProAlaAla	p.C80_C81insAAPAA	ENST00000343246	NM_033188.3	80	tgc/tgTGCCGCCCCAGCTGCc	0	
GIPC1	10755		GRCh37	19	14593640	14593640	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BR431																					ENST00000345425.2:c.149del	p.Pro50LeufsTer48	p.P50Lfs*48	ENST00000345425	NM_202470.2	50	cCt/ct	0	
LOR	4014		GRCh37	1	153234005	153234006	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TCTGGCGGCGGC			brca_smc_2018_BB01_109																					ENST00000368742.3:c.580_581insTCTGGCGGCGGC	p.Ser194delinsPheTrpArgArgPro	p.S194delinsFWRRP	ENST00000368742	NM_000427.2	194	tct/tTCTGGCGGCGGCct	0	
CHRM4	1132		GRCh37	11	46407504	46407505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAAT			brca_smc_2018_BB01_109																					ENST00000433765.2:c.603_604insATTG	p.Ala202IlefsTer89	p.A202Ifs*89	ENST00000433765	NM_000741.2	201	-/ATTG	0	
MARCKS	4082		GRCh37	6	114181210	114181210	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BB01_030																					ENST00000368635.4:c.464del	p.Lys155ArgfsTer12	p.K155Rfs*12	ENST00000368635	NM_002356.5	152	Aaa/aa	0	
TMEM229A	730130		GRCh37	7	123672162	123672163	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGA			brca_smc_2018_BB01_030																					ENST00000455783.1:c.895_896insTCCA	p.His299LeufsTer64	p.H299Lfs*64	ENST00000455783	NM_001136002.1	299	cac/cTCCAac	0	
GATA3	2625		GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			brca_smc_2018_BB01_030																					ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308		0	
MUC5B	727897		GRCh37	11	1260193	1260226	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCTACGCCCAGGCCTGCCACGACGCGGGCCTG	TGCCTACGCCCAGGCCTGCCACGACGCGGGCCTG	-			brca_smc_2018_BB01_030																					ENST00000529681.1:c.3392_3425del	p.Ala1131ValfsTer35	p.A1131Vfs*35	ENST00000529681	NM_002458.2	1130	gcTGCCTACGCCCAGGCCTGCCACGACGCGGGCCTG/gc	0	
MAP2K4	6416		GRCh37	17	12016634	12016636	+	inframe_deletion	In_Frame_Del	DEL	CTA	CTA	-			brca_smc_2018_BB01_030																					ENST00000353533.5:c.770_772del	p.Ser257_Ile258delinsPhe	p.S257_I258delinsF	ENST00000353533	NM_003010.3	257	tCTAtt/ttt	0	
MICALCL	84953		GRCh37	11	12316345	12316346	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTC			brca_smc_2018_BR393																					ENST00000256186.2:c.1367_1368insCTC	p.Ala456_Pro457insSer	p.A456_P457insS	ENST00000256186	NM_032867.2	456	gct/gcCTCt	0	
AJUBA	84962		GRCh37	14	23450968	23450993	+	frameshift_variant	Frame_Shift_Del	DEL	CGTAGCCCATGCTGATGCCGCTGGTG	CGTAGCCCATGCTGATGCCGCTGGTG	-			brca_smc_2018_BR393																					ENST00000262713.2:c.483_508del	p.Thr162ProfsTer135	p.T162Pfs*135	ENST00000262713	NM_032876.4	161	cgCACCAGCGGCATCAGCATGGGCTACGac/cgac	0	
ZFHX3	463		GRCh37	16	72821594	72821595	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCCGCC			brca_smc_2018_BR393																					ENST00000268489.5:c.10580_10581insGGCGGC	p.Gly3527_Ser3528insAlaAla	p.G3527_S3528insAA	ENST00000268489	NM_006885.3	3527	ggc/ggGGCGGCc	0	
NET1	10276		GRCh37	10	5495510	5495511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BR233																					ENST00000355029.4:c.756dup	p.Leu253SerfsTer16	p.L253Sfs*16	ENST00000355029	NM_001047160.2	252	att/atTt	0	
GLG1	2734		GRCh37	16	74640861	74640861	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BR233																					ENST00000422840.2:c.132del	p.Asn45ThrfsTer6	p.N45Tfs*6	ENST00000422840	NM_001145667.1	44	gcC/gc	0	
GRIN2C	2905		GRCh37	17	72839131	72839132	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCTCCGGGG			brca_smc_2018_BR233																					ENST00000293190.5:c.3145_3146insCCCGGAGCC	p.Glu1048_Leu1049insProArgSer	p.E1048_L1049insPRS	ENST00000293190	NM_000835.4	1048	-/CCCCGGAGC	0	
NEFH	4744		GRCh37	22	29885594	29885595	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	TGAGAAGGCCAAGTCCCC			brca_smc_2018_BR233																					ENST00000310624.6:c.1965_1966insTGAGAAGGCCAAGTCCCC	p.Pro655_Glu656insTer	p.P655_E656ins*	ENST00000310624	NM_021076.3	655	-/TGAGAAGGCCAAGTCCCC	0	
TP53	7157		GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			brca_smc_2018_BR395																					ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a	0	
KIAA1919			GRCh37	6	111587361	111587361	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BR331																					ENST00000368847.4:c.604del	p.Cys202ValfsTer4	p.C202Vfs*4	ENST00000368847	NM_153369.2	199	aTt/at	0	
ARRDC1	92714		GRCh37	9	140509281	140509282	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BR331																					ENST00000371421.4:c.1067dup	p.Glu357GlyfsTer57	p.E357Gfs*57	ENST00000371421	NM_152285.2	356	ccg/cCcg	0	
PSMD5	5711		GRCh37	9	123586951	123586953	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			brca_smc_2018_BB01_130																					ENST00000210313.3:c.825_827del	p.Lys275_Phe276delinsAsn	p.K275_F276delinsN	ENST00000210313	NM_005047.3	275	aaGTTt/aat	0	
CCDC178	374864		GRCh37	18	30913143	30913143	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BB01_130																					ENST00000383096.3:c.874del	p.Met292TrpfsTer3	p.M292Wfs*3	ENST00000383096		292	Atg/tg	0	
DSPP	1834		GRCh37	4	88537487	88537488	+	stop_gained	Nonsense_Mutation	INS	-	-	AGCAATGAA			brca_smc_2018_BR303																					ENST00000282478.7:c.3673_3674insAGCAATGAA	p.Asp1224_Ser1225insLysGlnTer	p.D1224_S1225insKQ*	ENST00000282478		1225	agc/aAGCAATGAAgc	0	
TDRD7	23424		GRCh37	9	100234680	100234682	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			brca_smc_2018_BR303																					ENST00000355295.4:c.1852_1854del	p.Val618del	p.V618del	ENST00000355295	NM_014290.2	616	cTTGtt/ctt	0	
PAPPA-AS1	493913		GRCh37	9	119160759	119160760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR303																					ENST00000445861.2:c.307dup	p.Ter103LeufsTer7	p.*103Lfs*7	ENST00000445861		102	-/T	0	
MAP3K1	4214		GRCh37	5	56178643	56178643	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BR355																					ENST00000399503.3:c.3617del	p.Pro1206LeufsTer39	p.P1206Lfs*39	ENST00000399503	NM_005921.1	1206	Cct/ct	0	
KMT2C	58508		GRCh37	7	151945496	151945496	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BR355																					ENST00000262189.6:c.2023del	p.Thr675GlnfsTer13	p.T675Qfs*13	ENST00000262189	NM_170606.2	675	Aca/ca	0	
RNPC3	55599		GRCh37	1	104076467	104076467	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BR391																					ENST00000423855.2:c.358del	p.Arg120GlyfsTer18	p.R120Gfs*18	ENST00000423855	NM_017619.3	116	gAa/ga	0	
ABCG2	9429		GRCh37	4	89061053	89061053	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BB01_120																					ENST00000237612.3:c.95del	p.Thr32MetfsTer6	p.T32Mfs*6	ENST00000237612	NM_004827.2	32	aCt/at	0	
IL26	55801		GRCh37	12	68619025	68619027	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			brca_smc_2018_BB01_120																					ENST00000229134.4:c.265_267del	p.Phe89del	p.F89del	ENST00000229134	NM_018402.1	89	TTC/-	0	
GUCA2A	2980		GRCh37	1	42629274	42629275	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BR413																					ENST00000357001.2:c.83dup	p.Asn28LysfsTer35	p.N28Kfs*35	ENST00000357001	NM_033553.2	28	aat/aAat	0	
KIAA1199			GRCh37	15	81173394	81173395	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BR413																					ENST00000220244.3:c.540dup	p.Glu181Ter	p.E181*	ENST00000220244	NM_018689.1	178	-/T	0	
TP53	7157		GRCh37	17	7579437	7579438	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCGC			brca_smc_2018_BR413																					ENST00000269305.4:c.251_252insGGGC	p.Pro85GlyfsTer65	p.P85Gfs*65	ENST00000269305	NM_001126112.2	83	-/GCGG	0	
DLEC1	9940		GRCh37	3	38158360	38158361	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			brca_smc_2018_BB01_128																					ENST00000308059.6:c.4160_4161del	p.Cys1387TyrfsTer28	p.C1387Yfs*28	ENST00000308059		1387	TGt/t	0	
PBRM1	55193		GRCh37	3	52637679	52637679	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BB01_128																					ENST00000296302.7:c.2637del	p.Cys880AlafsTer35	p.C880Afs*35	ENST00000296302		879	ctC/ct	0	
KIAA2018			GRCh37	3	113377482	113377482	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BB01_128																					ENST00000316407.4:c.3047del	p.Asn1016ThrfsTer23	p.N1016Tfs*23	ENST00000316407	NM_001009899.2	1016	aAc/ac	0	
RPS6KA4	8986		GRCh37	11	64127852	64127852	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BB01_128																					ENST00000334205.4:c.346+1del		p.L115fs	ENST00000334205	NM_003942.2	115	ctG/ct	0	
AC074212.3			GRCh37	19	46265048	46265049	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TCCAGC			brca_smc_2018_BB01_128																					ENST00000457052.2:c.1357_1358insTCCAGC	p.Ser453delinsPheGlnPro	p.S453delinsFQP	ENST00000457052		453	tcc/tTCCAGCcc	0	
KCNN3	3782		GRCh37	1	154842200	154842201	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCTGCTGCTGCTGCT			brca_smc_2018_BB01_068																					ENST00000271915.4:c.240_241insAGCAGCAGCAGCAGC	p.Gln80_Pro81insSerSerSerSerSer	p.Q80_P81insSSSSS	ENST00000271915	NM_001204087.1	80	-/AGCAGCAGCAGCAGC	0	
MAP3K1	4214		GRCh37	5	56178693	56178694	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	TG			brca_smc_2018_BB01_068																					ENST00000399503.3:c.3666_3666+1insTG	p.Thr1223Ter	p.T1223*	ENST00000399503	NM_005921.1	1222	-/TG	0	
SKIDA1	387640		GRCh37	10	21805478	21805479	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TCCTCC			brca_smc_2018_BB01_068																					ENST00000449193.2:c.1273_1274insGGAGGA	p.Glu425delinsGlyArgLys	p.E425delinsGRK	ENST00000449193	NM_207371.3	425	gag/gGGAGGAag	0	
ELK3	2004		GRCh37	12	96641029	96641030	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BB01_068																					ENST00000228741.3:c.525dup	p.Val176ArgfsTer14	p.V176Rfs*14	ENST00000228741	NM_005230.2	173	-/C	0	
WDFY2	115825		GRCh37	13	52329570	52329571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR301																					ENST00000298125.5:c.908dup	p.Asp303GlufsTer3	p.D303Efs*3	ENST00000298125	NM_052950.3	303	gac/gaAc	0	
NPC1	4864		GRCh37	18	21115657	21115657	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BR301																					ENST00000269228.5:c.3253del	p.Tyr1085MetfsTer8	p.Y1085Mfs*8	ENST00000269228	NM_000271.4	1085	Tat/at	0	
IRS1	3667		GRCh37	2	227661664	227661665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BB01_080																					ENST00000305123.5:c.1791dup	p.His598AlafsTer13	p.H598Afs*13	ENST00000305123	NM_005544.2	597	ggg/ggGg	0	
ZNF365	22891		GRCh37	10	64219537	64219538	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BB01_080																					ENST00000410046.3:c.965dup	p.Asn322LysfsTer2	p.N322Kfs*2	ENST00000410046	NM_199451.2	321	caa/caAa	0	
THOC2	57187		GRCh37	X	122759855	122759856	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BB01_080																					ENST00000245838.8:c.2965dup	p.Ser989PhefsTer4	p.S989Ffs*4	ENST00000245838	NM_001081550.1	988	-/T	0	
FOXC1	2296		GRCh37	6	1611803	1611804	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGC			brca_smc_2018_BR414																					ENST00000380874.2:c.1124_1125insGCG	p.Gly375_Gly376insArg	p.G375_G376insR	ENST00000380874	NM_001453.2	375	ggc/gGGCgc	0	
KIAA0195			GRCh37	17	73492458	73492458	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BB01_111																					ENST00000314256.7:c.3149del	p.Ser1050PhefsTer16	p.S1050Ffs*16	ENST00000314256	NM_014738.4	1050	tCt/tt	0	
ZNF567	163081		GRCh37	19	37209947	37209949	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			brca_smc_2018_BB01_111																					ENST00000536254.2:c.322_324del	p.Lys108del	p.K108del	ENST00000536254		107	gtGAAg/gtg	0	
GPRIN1	114787		GRCh37	5	176026120	176026143	+	inframe_deletion	In_Frame_Del	DEL	CTCAAAGACCCAGGATCCTCCTTC	CTCAAAGACCCAGGATCCTCCTTC	-			brca_smc_2018_BR408																					ENST00000303991.4:c.693_716del	p.Glu233_Lys240del	p.E233_K240del	ENST00000303991	NM_052899.2	231	agGAAGGAGGATCCTGGGTCTTTGAGa/aga	0	
CTIF	9811		GRCh37	18	46190188	46190191	+	frameshift_variant	Frame_Shift_Del	DEL	TTCC	TTCC	-			brca_smc_2018_BR437																					ENST00000256413.3:c.321_324del	p.Phe108ValfsTer50	p.F108Vfs*50	ENST00000256413	NM_014772.2	106	gaTTCC/ga	0	
SMTN	6525		GRCh37	22	31496936	31496936	+	intron_variant	Intron	DEL	G	G	-			brca_smc_2018_BR437																					ENST00000347557.2:c.2603+1055del		p.*868*	ENST00000347557	NM_001207017.1			0	
SHANK3	85358		GRCh37	22	51159933	51159934	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			brca_smc_2018_BR437																					ENST00000262795.3:c.3727dup	p.Ala1243GlyfsTer69	p.A1243Gfs*69	ENST00000262795	NM_033517.1	1240	-/G	0	
GATA3	2625		GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			brca_smc_2018_BB01_053																					ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308		0	
BPTF	2186		GRCh37	17	65955783	65955784	+	protein_altering_variant	In_Frame_Ins	INS	-	-	GCCCCTCCA			brca_smc_2018_BB01_053																					ENST00000321892.4:c.8431_8432insGCCCCTCCA	p.Pro2811delinsArgProSerThr	p.P2811delinsRPST	ENST00000321892		2811	cct/cGCCCCTCCAct	0	
KRTAP9-8	83901		GRCh37	17	39394711	39394725	+	inframe_deletion	In_Frame_Del	DEL	GACCACCTGCTGCAG	GACCACCTGCTGCAG	-			brca_smc_2018_BB01_104																					ENST00000254072.6:c.414_428del	p.Cys140_Cys144del	p.C140_C144del	ENST00000254072	NM_031963.2	136	gaGACCACCTGCTGCAGg/gag	0	
SLC2A8	29988		GRCh37	9	130162252	130162254	+	inframe_deletion	In_Frame_Del	DEL	GTC	GTC	-			brca_smc_2018_BB01_112																					ENST00000373371.3:c.500_502del	p.Val167del	p.V167del	ENST00000373371	NM_014580.4	165	GTC/-	0	
OR8B2	26595		GRCh37	11	124252484	124252485	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BB01_112																					ENST00000375013.2:c.756dup	p.Gly253TrpfsTer9	p.G253Wfs*9	ENST00000375013	NM_001005468.1	252	ttt/ttTt	0	
TP53	7157		GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BB01_112																					ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc	0	
TOP3A	7156		GRCh37	17	18181627	18181631	+	frameshift_variant	Frame_Shift_Del	DEL	GGCAT	GGCAT	-			brca_smc_2018_BB01_112																					ENST00000321105.5:c.2185_2189del	p.Met729SerfsTer30	p.M729Sfs*30	ENST00000321105	NM_004618.3	729	ATGCCt/t	0	
C19orf33	64073		GRCh37	19	38795551	38795552	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAGAAGGAGAAGGGC			brca_smc_2018_BB01_112																					ENST00000301246.5:c.269_270insAGAAGGAGAAGGGCA	p.Lys90_Lys91insGluGlyGluGlyGln	p.K90_K91insEGEGQ	ENST00000301246	NM_033520.1	90	aag/aAAGAAGGAGAAGGGCag	0	
ARID1A	8289		GRCh37	1	27087373	27087374	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BB01_103																					ENST00000324856.7:c.1950dup	p.Met651HisfsTer25	p.M651Hfs*25	ENST00000324856	NM_006015.4	649	-/C	0	
CCDC108			GRCh37	2	219892433	219892433	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BB01_103																					ENST00000341552.5:c.2150del	p.Phe717SerfsTer41	p.F717Sfs*41	ENST00000341552	NM_194302.3	717	tTc/tc	0	
ZFHX3	463		GRCh37	16	72821594	72821595	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCCGCC			brca_smc_2018_BB01_103																					ENST00000268489.5:c.10580_10581insGGCGGC	p.Gly3527_Ser3528insAlaAla	p.G3527_S3528insAA	ENST00000268489	NM_006885.3	3527	ggc/ggGGCGGCc	0	
TAF7L	54457		GRCh37	X	100538442	100538442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BB01_103																					ENST00000372907.3:c.533del	p.Ser178PhefsTer27	p.S178Ffs*27	ENST00000372907	NM_024885.3	178	tCt/tt	0	
RNPC3	55599		GRCh37	1	104076467	104076467	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BR212																					ENST00000423855.2:c.358del	p.Arg120GlyfsTer18	p.R120Gfs*18	ENST00000423855	NM_017619.3	116	gAa/ga	0	
COA6	388753		GRCh37	1	234510117	234510118	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BR212																					ENST00000366613.1:c.264_265insT	p.Ser89Ter	p.S89*	ENST00000366613	NM_001012985.2	88	-/T	0	
TAF1L	138474		GRCh37	9	32633584	32633585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BR212																					ENST00000242310.4:c.1994dup	p.Ala666GlyfsTer38	p.A666Gfs*38	ENST00000242310	NM_153809.2	665	aag/aAag	0	
NEFH	4744		GRCh37	22	29885585	29885586	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	CAAGTCCCCTGAGAAGGC			brca_smc_2018_BR212																					ENST00000310624.6:c.1956_1957insCAAGTCCCCTGAGAAGGC	p.Ala652_Lys653insGlnValProTer	p.A652_K653insQVP*	ENST00000310624	NM_021076.3	652	-/CAAGTCCCCTGAGAAGGC	0	
EIF5B	9669		GRCh37	2	99977650	99977651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR374																					ENST00000289371.6:c.293dup	p.Lys99GlufsTer11	p.K99Efs*11	ENST00000289371	NM_015904.3	96	aaa/aAaa	0	
TOPBP1	11073		GRCh37	3	133374326	133374327	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BR374																					ENST00000260810.5:c.550dup	p.Ile184AsnfsTer3	p.I184Nfs*3	ENST00000260810	NM_007027.3	183	-/A	0	
MAML3	55534		GRCh37	4	140811082	140811083	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TGT			brca_smc_2018_BR374																					ENST00000509479.2:c.1508_1509insCAA	p.Gln503delinsHisLys	p.Q503delinsHK	ENST00000509479	NM_018717.4	503	cag/cACAag	0	
CCDC129			GRCh37	7	31697914	31697915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BR374																					ENST00000451887.2:c.3106dup	p.Ser1036PhefsTer6	p.S1036Ffs*6	ENST00000451887	NM_001257968.1	1033	ttt/tTtt	0	
ATM	472		GRCh37	11	108155076	108155076	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BR374																					ENST00000278616.4:c.3870del	p.Val1292Ter	p.V1292*	ENST00000278616	NM_000051.3	1290	aTt/at	0	
CHEK2	11200		GRCh37	22	29099507	29099509	+	inframe_deletion	In_Frame_Del	DEL	ATA	ATA	-			brca_smc_2018_BR374																					ENST00000328354.6:c.892_894del	p.Tyr298del	p.Y298del	ENST00000328354	NM_007194.3	298	TAT/-	0	
NEFH	4744		GRCh37	22	29885568	29885569	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	AAGTCCCCTGAGAAGGCC			brca_smc_2018_BR374																					ENST00000310624.6:c.1940_1941insAGTCCCCTGAGAAGGCCA	p.Lys647_Ser648insValProTer	p.K647_S648insVP*	ENST00000310624	NM_021076.3	647	aag/aAAGTCCCCTGAGAAGGCCag	0	
PHACTR4	65979		GRCh37	1	28785730	28785730	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BB01_086																					ENST00000373839.3:c.160del	p.Ser54ValfsTer12	p.S54Vfs*12	ENST00000373839	NM_001048183.1	51	Aaa/aa	0	
PHF14	9678		GRCh37	7	11076715	11076719	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TAAGG	TAAGG	-			brca_smc_2018_BB01_079																					ENST00000403050.3:c.1980+1_1980+5del		p.X660_splice	ENST00000403050	NM_014660.3	660		0	
GSE1	23199		GRCh37	16	85706045	85706045	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BB01_079																					ENST00000253458.7:c.3556del	p.Arg1186GlyfsTer27	p.R1186Gfs*27	ENST00000253458	NM_014615.3	1185	gAa/ga	0	
C9orf131	138724		GRCh37	9	35045212	35045213	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			brca_smc_2018_BB01_125																					ENST00000312292.5:c.2586_2587del	p.His862GlnfsTer63	p.H862Qfs*63	ENST00000312292	NM_203299.2	862	caCTgt/cagt	0	
GRIK4	2900		GRCh37	11	120702639	120702639	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BB01_125																					ENST00000438375.2:c.592del	p.Arg198GlyfsTer32	p.R198Gfs*32	ENST00000438375	NM_014619.2	197	aCc/ac	0	
WNK1	65125		GRCh37	12	970297	970297	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BB01_125																					ENST00000315939.6:c.1748del	p.Lys583SerfsTer11	p.K583Sfs*11	ENST00000315939	NM_018979.3	580	gAa/ga	0	
NEK8	284086		GRCh37	17	27064965	27064965	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BB01_125																					ENST00000268766.6:c.1020del	p.Arg341AlafsTer21	p.R341Afs*21	ENST00000268766	NM_178170.2	340	Ggg/gg	0	
GZMM	3004		GRCh37	19	549133	549134	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BB01_125																					ENST00000264553.3:c.564dup	p.Ser189GlnfsTer18	p.S189Qfs*18	ENST00000264553	NM_001258351.1	187	tcc/tcCc	0	
HCFC1	3054		GRCh37	X	153219646	153219646	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BB01_125																					ENST00000310441.7:c.4204del	p.Gln1402ArgfsTer39	p.Q1402Rfs*39	ENST00000310441	NM_005334.2	1402	Cag/ag	0	
MUC19	283463		GRCh37	12	40826485	40826485	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BR246																					ENST00000454784.4:c.1015del	p.His339MetfsTer2	p.H339Mfs*2	ENST00000454784		339	Cat/at	0	
MYH11	4629		GRCh37	16	15854473	15854474	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTG			brca_smc_2018_BR246																					ENST00000300036.5:c.1171_1172insCAGA	p.Asp391AlafsTer29	p.D391Afs*29	ENST00000300036	NM_002474.2	391	gat/gCAGAat	0	
ATXN7L1	222255		GRCh37	7	105305548	105305549	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			brca_smc_2018_BR205																					ENST00000419735.3:c.542_543del	p.Thr181SerfsTer10	p.T181Sfs*10	ENST00000419735	NM_020725.1	181	aCA/a	0	
RFX7	64864		GRCh37	15	56388732	56388733	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			brca_smc_2018_BR226																					ENST00000559447.2:c.903dup	p.Thr302HisfsTer56	p.T302Hfs*56	ENST00000559447		301	gtc/gtCc	0	
SYT2	127833		GRCh37	1	202568405	202568407	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			brca_smc_2018_BB01_046																					ENST00000367267.1:c.992_994del	p.Lys331del	p.K331del	ENST00000367267	NM_001136504.1	331	aAGAcc/acc	0	
F13A1	2162		GRCh37	6	6251122	6251126	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTT	CTCTT	-			brca_smc_2018_BB01_046																					ENST00000264870.3:c.608_612del	p.Glu203ValfsTer5	p.E203Vfs*5	ENST00000264870	NM_000129.3	203	gAAGAG/g	0	
TP53	7157		GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			brca_smc_2018_BB01_046																					ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t	0	
AC090616.2			GRCh37	17	30469471	30469472	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCG			brca_smc_2018_BB01_046																					ENST00000398832.2:c.266_267insCGG	p.Gly90dup	p.G90dup	ENST00000398832		90	cgg/cgCGGg	0	
DPF1	8193		GRCh37	19	38709609	38709611	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			brca_smc_2018_BB01_046																					ENST00000420980.2:c.467_469del	p.Lys156del	p.K156del	ENST00000420980	NM_004647.2	156	aAGAtt/att	0	
NXPE3	91775		GRCh37	3	101504523	101504523	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BB01_094																					ENST00000273347.5:c.83del	p.Thr28IlefsTer3	p.T28Ifs*3	ENST00000273347	NM_145037.2	28	aCt/at	0	
OR7E24	26648		GRCh37	19	9361741	9361741	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BB01_094																					ENST00000456448.1:c.32del	p.Phe11SerfsTer89	p.F11Sfs*89	ENST00000456448	NM_001079935.1	8	Ttt/tt	0	
STIL	6491		GRCh37	1	47717315	47717315	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BR367																					ENST00000360380.3:c.3357del	p.Lys1121AsnfsTer3	p.K1121Nfs*3	ENST00000360380	NM_001282936.1	1119	acC/ac	0	
MAML3	55534		GRCh37	4	140811082	140811083	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TGT			brca_smc_2018_BR367																					ENST00000509479.2:c.1508_1509insCAA	p.Gln503delinsHisLys	p.Q503delinsHK	ENST00000509479	NM_018717.4	503	cag/cACAag	0	
PHF2	5253		GRCh37	9	96438999	96439000	+	protein_altering_variant	In_Frame_Ins	INS	-	-	ACCACCCCTGCCTCC			brca_smc_2018_BR367																					ENST00000359246.4:c.2956_2957insACCACCCCTGCCTCC	p.Thr986delinsAsnHisProCysLeuPro	p.T986delinsNHPCLP	ENST00000359246	NM_005392.3	986	acc/aACCACCCCTGCCTCCcc	0	
FAM90A1	55138		GRCh37	12	8374782	8374783	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACG			brca_smc_2018_BR367																					ENST00000307435.6:c.1032_1034dup	p.Ser345dup	p.S345dup	ENST00000307435		345	acg/aCGTcg	0	
G2E3	55632		GRCh37	14	31077136	31077136	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BR367																					ENST00000206595.6:c.1362del	p.Ile455PhefsTer3	p.I455Ffs*3	ENST00000206595	NM_017769.3	454	gCc/gc	0	
HDAC5	10014		GRCh37	17	42160025	42160027	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			brca_smc_2018_BR367																					ENST00000586802.1:c.2533_2535del	p.Phe845del	p.F845del	ENST00000586802		845	TTC/-	0	
EPN3	55040		GRCh37	17	48614407	48614407	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BR367																					ENST00000268933.3:c.492del	p.Gln165SerfsTer56	p.Q165Sfs*56	ENST00000268933	NM_017957.2	164	Ggg/gg	0	
TIAM1	7074		GRCh37	21	32567558	32567559	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			brca_smc_2018_BR367																					ENST00000286827.3:c.2556_2557del	p.Thr853SerfsTer3	p.T853Sfs*3	ENST00000286827	NM_003253.2	852	gaTAca/gaca	0	
NEFH	4744		GRCh37	22	29885574	29885575	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	CCTGAGAAGGCCAAGTCC			brca_smc_2018_BB01_059																					ENST00000310624.6:c.1946_1947insCTGAGAAGGCCAAGTCCC	p.Pro649_Glu650insTer	p.P649_E650ins*	ENST00000310624	NM_021076.3	649	cct/cCCTGAGAAGGCCAAGTCCct	0	
C12orf57	113246		GRCh37	12	7053769	7053769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BR307																					ENST00000229281.5:c.184del	p.Gln62SerfsTer41	p.Q62Sfs*41	ENST00000229281	NM_138425.2	61	atC/at	0	
C18orf21	83608		GRCh37	18	33557424	33557424	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BR307																					ENST00000592875.1:c.352del	p.Arg118GlufsTer7	p.R118Efs*7	ENST00000592875	NM_031446.4	118	Aga/ga	0	
MAML3	55534		GRCh37	4	140811082	140811083	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TGT			brca_smc_2018_BR386																					ENST00000509479.2:c.1508_1509insCAA	p.Gln503delinsHisLys	p.Q503delinsHK	ENST00000509479	NM_018717.4	503	cag/cACAag	0	
TBX3	6926		GRCh37	12	115112248	115112249	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			brca_smc_2018_BR386																					ENST00000257566.3:c.1491_1492dup	p.Leu498ProfsTer135	p.L498Pfs*135	ENST00000257566	NM_016569.3	497	-/CC	0	
RIMS2	9699		GRCh37	8	105261042	105261044	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GTA	GTA	-			brca_smc_2018_BR356																					ENST00000406091.3:c.3589+1_3589+3del		p.X1197_splice	ENST00000406091	NM_001100117.2	1197		0	
AVEN	57099		GRCh37	15	34159814	34159816	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			brca_smc_2018_BR356																					ENST00000306730.3:c.853_855del	p.Glu285del	p.E285del	ENST00000306730	NM_020371.2	285	GAA/-	0	
UBR4	23352		GRCh37	1	19419377	19419377	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BB01_044																					ENST00000375254.3:c.14147del	p.Arg4716ProfsTer8	p.R4716Pfs*8	ENST00000375254	NM_020765.2	4716	cGc/cc	0	
TAF1B	9014		GRCh37	2	9989571	9989571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BB01_044																					ENST00000263663.5:c.197del	p.Asn66ThrfsTer26	p.N66Tfs*26	ENST00000263663	NM_005680.2	63	Aaa/aa	0	
CDK9	1025		GRCh37	9	130550839	130550840	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BB01_044																					ENST00000373264.4:c.627dup	p.Ile210HisfsTer2	p.I210Hfs*2	ENST00000373264	NM_001261.3	207	-/C	0	
CA5B	11238		GRCh37	X	15792433	15792434	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			brca_smc_2018_BB01_044																					ENST00000318636.3:c.468_469del	p.Leu156PhefsTer9	p.L156Ffs*9	ENST00000318636	NM_007220.3	156	ttAGtg/tttg	0	
CDK13	8621		GRCh37	7	39990717	39990718	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			brca_smc_2018_BB01_012																					ENST00000181839.4:c.484dup	p.Ala162GlyfsTer108	p.A162Gfs*108	ENST00000181839	NM_031267.3	159	-/G	0	
TP53	7157		GRCh37	17	7574030	7574030	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BB01_012																					ENST00000269305.4:c.997del	p.Arg333ValfsTer12	p.R333Vfs*12	ENST00000269305	NM_001126112.2	333	Cgt/gt	0	
SEC31A	22872		GRCh37	4	83803016	83803019	+	frameshift_variant	Frame_Shift_Del	DEL	GCTA	GCTA	-			brca_smc_2018_BB01_074																					ENST00000355196.2:c.71_74del	p.Leu24GlnfsTer24	p.L24Qfs*24	ENST00000355196		24	cTAGCa/ca	0	
TP53	7157		GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			brca_smc_2018_BB01_074																					ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag	0	
BMP15	9210		GRCh37	X	50653910	50653910	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BB01_074																					ENST00000252677.3:c.130del	p.Leu44Ter	p.L44*	ENST00000252677	NM_005448.2	43	Ccc/cc	0	
PIK3CA	5290		GRCh37	3	178952147	178952148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BB01_131																					ENST00000263967.3:c.3203dup	p.Asn1068LysfsTer5	p.N1068Kfs*5	ENST00000263967	NM_006218.2	1068	aac/aAac	0	
SEMA3G	56920		GRCh37	3	52469980	52470008	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAAGCCATGCTCCAGAGTGGTGCAGGT	GAGAAGCCATGCTCCAGAGTGGTGCAGGT	-			brca_smc_2018_BB01_067																					ENST00000231721.2:c.1960_1988del	p.Thr654ProfsTer61	p.T654Pfs*61	ENST00000231721	NM_020163.1	654	ACCTGCACCACTCTGGAGCATGGCTTCTCc/c	0	
CCNB1	891		GRCh37	5	68471296	68471296	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BB01_067																					ENST00000256442.5:c.1017del	p.Pro340LeufsTer12	p.P340Lfs*12	ENST00000256442	NM_031966.3	339	Ttt/tt	0	
DTX3	196403		GRCh37	12	58002930	58002932	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			brca_smc_2018_BB01_067																					ENST00000337737.3:c.1039_1041del	p.Asp347del	p.D347del	ENST00000337737	NM_178502.2	347	GAC/-	0	
NTF4	4909		GRCh37	19	49564797	49564797	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BB01_067																					ENST00000593537.1:c.458del	p.Ala153GlufsTer28	p.A153Efs*28	ENST00000593537		153	gCa/ga	0	
AGXT	189		GRCh37	2	241808308	241808309	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BB01_081																					ENST00000307503.3:c.33dup	p.Lys12GlnfsTer156	p.K12Qfs*156	ENST00000307503	NM_000030.2	9	acc/acCc	0	
ATXN1	6310		GRCh37	6	16327932	16327933	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			brca_smc_2018_BB01_081																					ENST00000244769.4:c.609_610insAGC	p.Gln203_Gln204insSer	p.Q203_Q204insS	ENST00000244769	NM_000332.3	203	-/AGC	0	
GATAD2A	54815		GRCh37	19	19612168	19612185	+	inframe_deletion	In_Frame_Del	DEL	GGCCCCTGCACAGGCCAA	GGCCCCTGCACAGGCCAA	-			brca_smc_2018_BB01_081																					ENST00000358713.3:c.1447_1464del	p.Pro483_Ala488del	p.P483_A488del	ENST00000358713		481	acGGCCCCTGCACAGGCCAAg/acg	0	
ZFHX3	463		GRCh37	16	72821594	72821595	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCCGCC			brca_smc_2018_BR251																					ENST00000268489.5:c.10580_10581insGGCGGC	p.Gly3527_Ser3528insAlaAla	p.G3527_S3528insAA	ENST00000268489	NM_006885.3	3527	ggc/ggGGCGGCc	0	
BAI3			GRCh37	6	69685151	69685152	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			brca_smc_2018_BR248																					ENST00000370598.1:c.1653dup	p.Ser552GlnfsTer20	p.S552Qfs*20	ENST00000370598	NM_001704.2	551	-/C	0	
GATA3	2625		GRCh37	10	8115875	8115876	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BR248																					ENST00000346208.3:c.1221_1222insT	p.Pro408SerfsTer99	p.P408Sfs*99	ENST00000346208		407	-/T	0	
ANKS1A	23294		GRCh37	6	34857322	34857323	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			brca_smc_2018_BB01_078																					ENST00000360359.3:c.143_144insGCA	p.Gly48_Gly49insHis	p.G48_G49insH	ENST00000360359	NM_015245.2	48	ggc/ggGCAc	0	
KMT2D	8085		GRCh37	12	49445352	49445378	+	inframe_deletion	In_Frame_Del	DEL	GAGTCCTCAGGTGGTGGGGATGTGGGG	GAGTCCTCAGGTGGTGGGGATGTGGGG	-			brca_smc_2018_BB01_078																					ENST00000301067.7:c.2088_2114del	p.Thr698_Pro706del	p.T698_P706del	ENST00000301067	NM_003482.3	696	tcCCCCACATCCCCACCACCTGAGGACTCa/tca	0	
NCOR2	9612		GRCh37	12	124887059	124887060	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			brca_smc_2018_BB01_078																					ENST00000405201.1:c.1530_1531insAGC	p.Gln510_Pro511insSer	p.Q510_P511insS	ENST00000405201		510	-/AGC	0	
RP11-435B5.5			GRCh37	1	143392654	143392657	+	splice_donor_variant,non_coding_transcript_exon_variant	Splice_Site	DEL	TAAG	TAAG	-			brca_smc_2018_BR419																					ENST00000428624.1:n.2279+3_2279+6del		p.X760_splice	ENST00000428624		760		0	
MAML3	55534		GRCh37	4	140811082	140811083	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TGT			brca_smc_2018_BR419																					ENST00000509479.2:c.1508_1509insCAA	p.Gln503delinsHisLys	p.Q503delinsHK	ENST00000509479	NM_018717.4	503	cag/cACAag	0	
GPRIN1	114787		GRCh37	5	176026120	176026143	+	inframe_deletion	In_Frame_Del	DEL	CTCAAAGACCCAGGATCCTCCTTC	CTCAAAGACCCAGGATCCTCCTTC	-			brca_smc_2018_BB01_014																					ENST00000303991.4:c.693_716del	p.Glu233_Lys240del	p.E233_K240del	ENST00000303991	NM_052899.2	231	agGAAGGAGGATCCTGGGTCTTTGAGa/aga	0	
INPP5E	56623		GRCh37	9	139328559	139328559	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BB01_014																					ENST00000371712.3:c.964del	p.Leu322CysfsTer72	p.L322Cfs*72	ENST00000371712	NM_019892.4	322	Ctg/tg	0	
NCOR2	9612		GRCh37	12	124887059	124887060	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCTGCT			brca_smc_2018_BB01_014																					ENST00000405201.1:c.1530_1531insAGCAGC	p.Gln510_Pro511insSerSer	p.Q510_P511insSS	ENST00000405201		510	-/AGCAGC	0	
LSM11	134353		GRCh37	5	157178444	157178444	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BR457																					ENST00000286307.5:c.499del	p.Val167Ter	p.V167*	ENST00000286307	NM_173491.2	165	gaG/ga	0	
GATA3	2625		GRCh37	10	8111505	8111506	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR457																					ENST00000346208.3:c.992dup	p.Asn331LysfsTer21	p.N331Kfs*21	ENST00000346208		331	aat/aAat	0	
ZFP36L1	677		GRCh37	14	69257151	69257151	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			brca_smc_2018_BR457																					ENST00000336440.3:c.116del	p.Lys39ArgfsTer41	p.K39Rfs*41	ENST00000336440		39	aAg/ag	0	
TMC2	117532		GRCh37	20	2605022	2605022	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BR457																					ENST00000358864.1:c.2288del	p.Pro763GlnfsTer5	p.P763Qfs*5	ENST00000358864	NM_080751.2	762	atC/at	0	
KDM5C	8242		GRCh37	X	53222321	53222321	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			brca_smc_2018_BR300																					ENST00000375401.3:c.4511del	p.Gly1504ValfsTer40	p.G1504Vfs*40	ENST00000375401	NM_004187.3	1504	gGt/gt	0	
CCDC66	285331		GRCh37	3	56591279	56591280	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GGGGTAAGCA			brca_smc_2018_BR259																					ENST00000394672.3:c.11+1_11+2insGTAAGCAGGG		p.-3fs	ENST00000394672	NM_001141947.1	3	-/GGGGTAAGCA	0	
MAP3K13	9175		GRCh37	3	185191199	185191200	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BR259																					ENST00000265026.3:c.2080dup	p.Ser694PhefsTer4	p.S694Ffs*4	ENST00000265026	NM_004721.4	694	tcg/tTcg	0	
KMT2C	58508		GRCh37	7	151873284	151873284	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			brca_smc_2018_BR259																					ENST00000262189.6:c.9254del	p.Pro3085LeufsTer12	p.P3085Lfs*12	ENST00000262189	NM_170606.2	3085	cCt/ct	0	
WHSC1L1			GRCh37	8	38178604	38178606	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			brca_smc_2018_BR259																					ENST00000317025.8:c.1793_1795del	p.Lys598del	p.K598del	ENST00000317025	NM_023034.1	598	aAGAtc/atc	0	
PTEN	5728		GRCh37	10	89720804	89720805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR259																					ENST00000371953.3:c.955dup	p.Thr319AsnfsTer6	p.T319Nfs*6	ENST00000371953	NM_000314.4	319	act/aAct	0	
CDH1	999		GRCh37	16	68845694	68845695	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BR259																					ENST00000261769.5:c.944dup	p.Asn315LysfsTer6	p.N315Kfs*6	ENST00000261769	NM_004360.3	314	aaa/aAaa	0	
TRIP12	9320		GRCh37	2	230656731	230656731	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			brca_smc_2018_BB01_051																					ENST00000283943.5:c.4041del	p.Tyr1347Ter	p.Y1347*	ENST00000283943	NM_004238.1	1347	taT/ta	0	
FOXF2	2295		GRCh37	6	1390277	1390278	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCG			brca_smc_2018_BB01_051																					ENST00000259806.1:c.96_97insCGC	p.Pro32_Ala33insArg	p.P32_A33insR	ENST00000259806	NM_001452.1	32	ccc/ccCCGc	0	
GATA3	2625		GRCh37	10	8115875	8115876	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			brca_smc_2018_BB01_051																					ENST00000346208.3:c.1221_1222insT	p.Pro408SerfsTer99	p.P408Sfs*99	ENST00000346208		407	-/T	0	
RP11-1407O15.2			GRCh37	17	36365109	36365110	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			brca_smc_2018_BB01_051																					ENST00000520237.1:c.486dup	p.Lys163Ter	p.K163*	ENST00000520237		162	agt/agTt	0	
CTD-3064M3.7			GRCh37	8	142451796	142451796	+	downstream_gene_variant	3'Flank	SNP	C	C	T			brca_smc_2018_BR187																								ENST00000606664				0	
SLC4A11	83959		GRCh37	20	3218545	3218545	+	upstream_gene_variant	5'Flank	SNP	C	C	T			brca_smc_2018_BR187																								ENST00000380056	NM_032034.3			0	
CPEB2	132864		GRCh37	4	15004551	15004551	+	upstream_gene_variant	5'Flank	SNP	C	C	G			brca_smc_2018_BB01_041																								ENST00000507071				0	
WTIP	126374		GRCh37	19	34972261	34972261	+	upstream_gene_variant	5'Flank	SNP	T	T	C			brca_smc_2018_BR255																								ENST00000590071	NM_001080436.1			0	
PKD1L2	114780		GRCh37	16	81219212	81219212	+	upstream_gene_variant	5'Flank	SNP	G	G	T			brca_smc_2018_BB01_044																								ENST00000527937				0	
ZC2HC1C	79696		GRCh37	14	75535969	75535969	+	upstream_gene_variant	5'Flank	SNP	C	C	T			brca_smc_2018_BB01_046																								ENST00000524913	NM_024643.2			0	
ZNF414	84330		GRCh37	19	8575798	8575798	+	downstream_gene_variant	3'Flank	SNP	C	C	T			brca_smc_2018_BR356																								ENST00000255616	NM_032370.2			0	
NRSN1	140767		GRCh37	6	24145857	24145857	+	downstream_gene_variant	3'Flank	SNP	G	G	A			brca_smc_2018_BB01_111																								ENST00000378478				0	
PRICKLE4	29964		GRCh37	6	41754511	41754511	+	downstream_gene_variant	3'Flank	SNP	C	C	G			brca_smc_2018_BB01_103																								ENST00000359201				0	
TCP11	6954		GRCh37	6	35108990	35108990	+	upstream_gene_variant	5'Flank	DEL	C	C	-			brca_smc_2018_BR255																								ENST00000512012				0	
CHTF8	54921		GRCh37	16	69153400	69153400	+	downstream_gene_variant	3'Flank	DEL	C	C	-			brca_smc_2018_BR419																								ENST00000398235				0	